17-03-17 23:48:52.438 -07 000000610 INF: =================== Cycle #79 ===================
17-03-17 23:48:52.438 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 23:48:52.438 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-17 23:48:52.438 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:48:52.438 -07 000000382 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:48:52.448 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:48:52.448 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:48:52.448 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 23:48:52.448 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 23:48:52.448 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 23:48:52.558 -07 000000561 INF: FPGA: Recv YMVTO 154379 878
17-03-17 23:48:52.558 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 108 ms to get response, and 117 ms overall
17-03-17 23:48:52.558 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-17 23:48:52.558 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-17 23:48:52.558 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.649 mm/sec
17-03-17 23:48:55.558 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:48:55.558 -07 000000623 INF: FPGA: Recv YRDPOS 154387
17-03-17 23:48:55.568 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:48:55.568 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:48:55.588 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:48:55.588 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 8 counts (0.004 mm)
17-03-17 23:48:55.588 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3148 ms
17-03-17 23:48:55.598 -07 000000610 INF: =================== Cycle #79, Flow Cell Temp 60° ===================
17-03-17 23:48:55.598 -07 000000610 INF: =================== Cycle #79, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 23:48:55.598 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 23:48:55.598 -07 000000475 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:48:55.608 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:48:55.608 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:48:55.608 -07 000000541 INF: FlowCellTempControl: Setting temperature polling rate to 00:00:01 ms
17-03-17 23:48:55.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.08303,  FlowCellCompartmentTemperature: 22.00563, AmbientTemperature: 18.52083
17-03-17 23:48:55.608 -07 000000502 INF: FPGA: Recv TEC2EN 
17-03-17 23:48:55.618 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:48:55.618 -07 000000610 INF: =================== Cycle #79, Flow Cell Temp 60° ===================
17-03-17 23:48:55.618 -07 000000610 INF: =================== Cycle #79 ===================
17-03-17 23:48:55.618 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:48:55.618 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:48:55.648 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:48:55.648 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 23:48:55.648 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:48:55.948 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:48:55.968 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:48:55.968 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:48:56.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:48:56.038 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:48:56.038 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:48:56.138 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3) ===================
17-03-17 23:48:56.138 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:48:56.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:48:56.168 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:48:56.168 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:48:56.168 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:48:56.298 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:48:56.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:48:56.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.08303,  FlowCellCompartmentTemperature: 22.00563, AmbientTemperature: 18.52083
17-03-17 23:48:56.768 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.988112,
17-03-17 23:48:57.108 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:48:57.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval.
17-03-17 23:48:57.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.08303,  FlowCellCompartmentTemperature: 22.00563, AmbientTemperature: 18.52083
17-03-17 23:48:58.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.80942,  FlowCellCompartmentTemperature: 39.08442, AmbientTemperature: 18.52083
17-03-17 23:48:59.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:48:59.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:48:59.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.80942,  FlowCellCompartmentTemperature: 39.08442, AmbientTemperature: 18.50942
17-03-17 23:48:59.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:48:59.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:49:00.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:00.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:00.398 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:49:00.398 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3) ===================
17-03-17 23:49:00.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:00.558 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:49:00.558 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:49:00.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.60824,  FlowCellCompartmentTemperature: 47.30811, AmbientTemperature: 18.50526
17-03-17 23:49:00.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:00.718 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:49:00.718 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:49:00.718 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:49:00.848 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:49:00.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:01.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:01.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:01.338 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:49:01.338 -07 000000610 INF: =================== Cycle #79 ===================
17-03-17 23:49:01.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.46112,  FlowCellCompartmentTemperature: 54.33756, AmbientTemperature: 18.5011
17-03-17 23:49:02.108 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:49:02.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval.
17-03-17 23:49:02.128 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.023489,
17-03-17 23:49:02.558 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:49:02.558 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 23:49:02.558 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:49:02.578 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:49:02.578 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 23:49:02.578 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 23:49:02.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.46112,  FlowCellCompartmentTemperature: 54.33756, AmbientTemperature: 18.5011
17-03-17 23:49:02.708 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:49:02.728 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 23:49:02.728 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 23:49:02.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:49:02.798 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:49:02.798 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:49:02.898 -07 000000610 INF: =================== Cycle #79, Pumping Reagent CMS (4) ===================
17-03-17 23:49:02.898 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:49:02.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:02.928 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:49:02.928 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:49:02.928 -07 000000610 INF: =================== Cycle #79, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 23:49:03.058 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:49:03.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:49:03.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.39585,  FlowCellCompartmentTemperature: 59.36222, AmbientTemperature: 18.5011
17-03-17 23:49:04.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:04.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:49:04.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.40532,  FlowCellCompartmentTemperature: 60.14338, AmbientTemperature: 18.5011
17-03-17 23:49:04.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:05.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:05.018 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:49:05.018 -07 000000610 INF: =================== Cycle #79, Pumping Reagent CMS (4) ===================
17-03-17 23:49:05.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:05.178 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:49:05.178 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:49:05.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:05.338 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:49:05.338 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:49:05.338 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:49:05.468 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:49:05.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:05.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.48424,  FlowCellCompartmentTemperature: 59.72909, AmbientTemperature: 18.5011
17-03-17 23:49:05.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:05.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:05.958 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:49:05.958 -07 000000610 INF: =================== Cycle #79 ===================
17-03-17 23:49:06.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.48424,  FlowCellCompartmentTemperature: 59.72909, AmbientTemperature: 18.49488
17-03-17 23:49:07.108 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:49:07.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval.
17-03-17 23:49:07.178 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 23:49:07.178 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:49:07.178 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:49:07.198 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:49:07.198 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 23:49:07.198 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 23:49:07.348 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:49:07.368 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 23:49:07.368 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 23:49:07.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:49:07.438 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:49:07.438 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:49:07.488 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.008536,
17-03-17 23:49:07.538 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3) ===================
17-03-17 23:49:07.538 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:49:07.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:07.568 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:49:07.568 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:49:07.568 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:49:07.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.57462,  FlowCellCompartmentTemperature: 59.81206, AmbientTemperature: 18.49591
17-03-17 23:49:07.698 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:49:07.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:49:08.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.63552,  FlowCellCompartmentTemperature: 60.06384, AmbientTemperature: 18.48863
17-03-17 23:49:08.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:08.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:08.638 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:49:08.638 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3) ===================
17-03-17 23:49:08.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:08.798 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:49:08.798 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:49:08.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:08.958 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:49:08.958 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:49:08.958 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:49:09.088 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:49:09.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:09.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:09.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:09.578 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:49:09.578 -07 000000610 INF: =================== Cycle #79 ===================
17-03-17 23:49:09.578 -07 000000623 INF: WaitCommand(10000) start
17-03-17 23:49:09.578 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:49:09.578 -07 000000502 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:49:09.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.69846,  FlowCellCompartmentTemperature: 60.167, AmbientTemperature: 18.48863
17-03-17 23:49:10.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.69846,  FlowCellCompartmentTemperature: 60.167, AmbientTemperature: 18.48863
17-03-17 23:49:10.798 -07 000000502 INF: AsyncDelayTimer waited 1216ms
17-03-17 23:49:10.798 -07 000000502 INF: LanePump: Xmit /1?\r
17-03-17 23:49:10.828 -07 000000502 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:49:10.828 -07 000000502 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:49:10.958 -07 000000502 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:49:10.998 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:49:11.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.75921,  FlowCellCompartmentTemperature: 60.16203, AmbientTemperature: 18.4876
17-03-17 23:49:12.108 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:49:12.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval.
17-03-17 23:49:12.528 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:12.558 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:49:12.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.81467,  FlowCellCompartmentTemperature: 60.15584, AmbientTemperature: 18.48138
17-03-17 23:49:12.848 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.014009,
17-03-17 23:49:12.978 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:13.008 -07 000000502 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:13.008 -07 000000502 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 23:49:13.008 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:49:13.008 -07 000000502 INF: ===================  ===================
17-03-17 23:49:13.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.87847,  FlowCellCompartmentTemperature: 60.15708, AmbientTemperature: 18.48138
17-03-17 23:49:14.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.87847,  FlowCellCompartmentTemperature: 60.15708, AmbientTemperature: 18.4876
17-03-17 23:49:15.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.9234,  FlowCellCompartmentTemperature: 60.14589, AmbientTemperature: 18.47825
17-03-17 23:49:16.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.97979,  FlowCellCompartmentTemperature: 60.13345, AmbientTemperature: 18.47825
17-03-17 23:49:17.108 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:49:17.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval.
17-03-17 23:49:17.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.02151,  FlowCellCompartmentTemperature: 60.10486, AmbientTemperature: 18.47825
17-03-17 23:49:18.208 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.003063,
17-03-17 23:49:18.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.02151,  FlowCellCompartmentTemperature: 60.10486, AmbientTemperature: 18.47306
17-03-17 23:49:19.588 -07 000000623 INF: WaitCommand(10000) end
17-03-17 23:49:19.588 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3) ===================
17-03-17 23:49:19.588 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 23:49:19.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:19.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.07051,  FlowCellCompartmentTemperature: 60.08373, AmbientTemperature: 18.47306
17-03-17 23:49:19.628 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:49:19.628 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:49:19.628 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:49:19.758 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 23:49:19.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:49:20.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.11428,  FlowCellCompartmentTemperature: 60.07254, AmbientTemperature: 18.47306
17-03-17 23:49:21.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.11428,  FlowCellCompartmentTemperature: 60.07254, AmbientTemperature: 18.4689
17-03-17 23:49:22.108 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 3
17-03-17 23:49:22.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=3, R2=1, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1273, R2=1322, Total=2595. Warn if over 250 bubbles per interval.
17-03-17 23:49:22.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.15177,  FlowCellCompartmentTemperature: 60.04148, AmbientTemperature: 18.46783
17-03-17 23:49:23.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.19963,  FlowCellCompartmentTemperature: 59.97943, AmbientTemperature: 18.46783
17-03-17 23:49:23.648 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.973092,
17-03-17 23:49:24.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.23707,  FlowCellCompartmentTemperature: 59.94717, AmbientTemperature: 18.46783
17-03-17 23:49:25.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.23707,  FlowCellCompartmentTemperature: 59.94717, AmbientTemperature: 18.4689
17-03-17 23:49:25.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:25.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:49:26.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:26.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:49:26.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.26411,  FlowCellCompartmentTemperature: 59.96704, AmbientTemperature: 18.46783
17-03-17 23:49:26.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:26.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:49:27.108 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 23:49:27.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1273, R2=1324, Total=2597. Warn if over 250 bubbles per interval.
17-03-17 23:49:27.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:27.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:49:27.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.29631,  FlowCellCompartmentTemperature: 59.97943, AmbientTemperature: 18.46368
17-03-17 23:49:27.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:27.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:27.758 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 23:49:27.758 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3) ===================
17-03-17 23:49:27.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:27.918 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:49:27.918 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:49:28.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:28.078 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:49:28.078 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:49:28.078 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:49:28.208 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:49:28.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:28.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.33369,  FlowCellCompartmentTemperature: 59.99183, AmbientTemperature: 18.46368
17-03-17 23:49:28.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:28.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:28.698 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:49:28.698 -07 000000610 INF: =================== Cycle #79 ===================
17-03-17 23:49:29.088 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.978563,
17-03-17 23:49:29.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.33369,  FlowCellCompartmentTemperature: 59.99183, AmbientTemperature: 18.46162
17-03-17 23:49:29.918 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:49:29.918 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 23:49:29.918 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:49:29.938 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:49:29.938 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 23:49:29.938 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 23:49:30.148 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:49:30.168 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 23:49:30.168 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 23:49:30.218 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:49:30.238 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:49:30.238 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:49:30.338 -07 000000610 INF: =================== Cycle #79, Pumping Reagent IMT (1) ===================
17-03-17 23:49:30.338 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:49:30.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:30.368 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:49:30.368 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:49:30.368 -07 000000610 INF: =================== Cycle #79, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 23:49:30.498 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:49:30.538 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:49:30.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.35862,  FlowCellCompartmentTemperature: 60.0204, AmbientTemperature: 18.46162
17-03-17 23:49:31.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.39594,  FlowCellCompartmentTemperature: 60.05141, AmbientTemperature: 18.46265
17-03-17 23:49:31.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:32.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:49:32.108 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 23:49:32.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1274, R2=1325, Total=2599. Warn if over 250 bubbles per interval.
17-03-17 23:49:32.428 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:32.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:32.458 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:49:32.458 -07 000000610 INF: =================== Cycle #79, Pumping Reagent IMT (1) ===================
17-03-17 23:49:32.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:32.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.41149,  FlowCellCompartmentTemperature: 60.04148, AmbientTemperature: 18.46265
17-03-17 23:49:32.618 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:49:32.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:49:32.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:32.778 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:49:32.778 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:49:32.778 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:49:32.908 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:49:32.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:33.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:33.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:33.398 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:49:33.398 -07 000000610 INF: =================== Cycle #79 ===================
17-03-17 23:49:33.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.41149,  FlowCellCompartmentTemperature: 60.04148, AmbientTemperature: 18.45849
17-03-17 23:49:34.528 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.012614,
17-03-17 23:49:34.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.45813,  FlowCellCompartmentTemperature: 60.00798, AmbientTemperature: 18.46059
17-03-17 23:49:34.618 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:49:34.618 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:49:34.618 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:49:34.638 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:49:34.638 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 23:49:34.638 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:49:34.868 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:49:34.888 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 23:49:34.888 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 23:49:34.938 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:49:34.958 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:49:34.958 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:49:35.058 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3) ===================
17-03-17 23:49:35.058 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:49:35.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:35.088 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:49:35.088 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:49:35.088 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:49:35.218 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:49:35.258 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:49:35.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.47888,  FlowCellCompartmentTemperature: 60.03156, AmbientTemperature: 18.46368
17-03-17 23:49:36.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:36.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:36.158 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:49:36.158 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3) ===================
17-03-17 23:49:36.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:36.318 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:49:36.318 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:49:36.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:49:36.478 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:49:36.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:49:36.478 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:49:36.608 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.47888,  FlowCellCompartmentTemperature: 60.03156, AmbientTemperature: 18.46368
17-03-17 23:49:36.608 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:49:36.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:37.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:49:37.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:49:37.098 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:49:37.098 -07 000000610 INF: =================== Cycle #79 ===================
17-03-17 23:49:37.098 -07 000000610 INF: =================== Cycle #79, Flow Cell Temp 65° ===================
17-03-17 23:49:37.098 -07 000000610 INF: =================== Cycle #79, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 23:49:37.098 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 23:49:37.098 -07 000000512 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:49:37.108 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:49:37.108 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:49:37.108 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:49:37.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1274, R2=1325, Total=2599. Warn if over 250 bubbles per interval.
17-03-17 23:49:37.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.51512,  FlowCellCompartmentTemperature: 60.05141, AmbientTemperature: 18.46162
17-03-17 23:49:37.108 -07 000000561 INF: FPGA: Recv TEC2EN 
17-03-17 23:49:37.118 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 2 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:49:37.118 -07 000000610 INF: =================== Cycle #79, Flow Cell Temp 65° ===================
17-03-17 23:49:37.118 -07 000000610 INF: =================== Cycle #79 ===================
17-03-17 23:49:37.118 -07 000000610 INF: WaitCommand(30000) start
17-03-17 23:49:37.178 -07 000000541 INF: FlowCellTempControl: Setting temperature polling rate to 00:00:05 ms
17-03-17 23:49:38.108 -07 000000623 INF: FlowCellTempControl: Setting temperature polling rate to 00:00:01 ms
17-03-17 23:49:38.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.53996,  FlowCellCompartmentTemperature: 61.17377, AmbientTemperature: 18.46162
17-03-17 23:49:39.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.53996,  FlowCellCompartmentTemperature: 61.17377, AmbientTemperature: 18.46059
17-03-17 23:49:39.968 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.018051,
17-03-17 23:49:40.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.53786,  FlowCellCompartmentTemperature: 63.91678, AmbientTemperature: 18.46368
17-03-17 23:49:41.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.52859,  FlowCellCompartmentTemperature: 64.51664, AmbientTemperature: 18.46578
17-03-17 23:49:42.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.55241,  FlowCellCompartmentTemperature: 64.43008, AmbientTemperature: 18.46578
17-03-17 23:49:42.108 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:49:42.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1274, R2=1325, Total=2599. Warn if over 250 bubbles per interval.
17-03-17 23:49:43.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.55241,  FlowCellCompartmentTemperature: 64.43008, AmbientTemperature: 18.46368
17-03-17 23:49:44.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.59378,  FlowCellCompartmentTemperature: 64.5468, AmbientTemperature: 18.46368
17-03-17 23:49:45.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.62684,  FlowCellCompartmentTemperature: 64.72688, AmbientTemperature: 18.46475
17-03-17 23:49:45.408 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.009895,
17-03-17 23:49:46.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.62684,  FlowCellCompartmentTemperature: 64.72688, AmbientTemperature: 18.46475
17-03-17 23:49:47.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.67232,  FlowCellCompartmentTemperature: 64.84409, AmbientTemperature: 18.46162
17-03-17 23:49:47.108 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:49:47.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1274, R2=1325, Total=2599. Warn if over 250 bubbles per interval.
17-03-17 23:49:48.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.7167,  FlowCellCompartmentTemperature: 64.90477, AmbientTemperature: 18.46475
17-03-17 23:49:49.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.74974,  FlowCellCompartmentTemperature: 64.93643, AmbientTemperature: 18.46475
17-03-17 23:49:50.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.74974,  FlowCellCompartmentTemperature: 64.93643, AmbientTemperature: 18.46162
17-03-17 23:49:51.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.79411,  FlowCellCompartmentTemperature: 64.97074, AmbientTemperature: 18.46162
17-03-17 23:49:51.538 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.000345,
17-03-17 23:49:52.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.79411,  FlowCellCompartmentTemperature: 64.97074, AmbientTemperature: 18.46475
17-03-17 23:49:52.108 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:49:52.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1274, R2=1325, Total=2599. Warn if over 250 bubbles per interval.
17-03-17 23:49:53.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.85492,  FlowCellCompartmentTemperature: 64.99319, AmbientTemperature: 18.4689
17-03-17 23:49:54.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.88685,  FlowCellCompartmentTemperature: 64.99717, AmbientTemperature: 18.46783
17-03-17 23:49:55.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.92391,  FlowCellCompartmentTemperature: 64.99979, AmbientTemperature: 18.46783
17-03-17 23:49:56.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.92391,  FlowCellCompartmentTemperature: 64.99979, AmbientTemperature: 18.46475
17-03-17 23:49:56.978 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.983999,
17-03-17 23:49:57.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.95271,  FlowCellCompartmentTemperature: 64.99979, AmbientTemperature: 18.4689
17-03-17 23:49:57.108 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:49:57.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1274, R2=1325, Total=2599. Warn if over 250 bubbles per interval.
17-03-17 23:49:58.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.98665,  FlowCellCompartmentTemperature: 65.01036, AmbientTemperature: 18.46578
17-03-17 23:49:59.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.02468,  FlowCellCompartmentTemperature: 65.00906, AmbientTemperature: 18.46578
17-03-17 23:50:00.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.02468,  FlowCellCompartmentTemperature: 65.00906, AmbientTemperature: 18.46578
17-03-17 23:50:01.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.05554,  FlowCellCompartmentTemperature: 65.01565, AmbientTemperature: 18.46993
17-03-17 23:50:02.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.08118,  FlowCellCompartmentTemperature: 65.01698, AmbientTemperature: 18.46993
17-03-17 23:50:02.108 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:50:02.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1274, R2=1325, Total=2599. Warn if over 250 bubbles per interval.
17-03-17 23:50:02.418 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.996267,
17-03-17 23:50:03.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.08118,  FlowCellCompartmentTemperature: 65.01698, AmbientTemperature: 18.47306
17-03-17 23:50:04.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.11507,  FlowCellCompartmentTemperature: 65.01167, AmbientTemperature: 18.47718
17-03-17 23:50:05.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.14176,  FlowCellCompartmentTemperature: 65.00906, AmbientTemperature: 18.47825
17-03-17 23:50:06.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.17256,  FlowCellCompartmentTemperature: 65.01036, AmbientTemperature: 18.47825
17-03-17 23:50:07.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.17256,  FlowCellCompartmentTemperature: 65.01036, AmbientTemperature: 18.48138
17-03-17 23:50:07.108 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:50:07.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1274, R2=1325, Total=2599. Warn if over 250 bubbles per interval.
17-03-17 23:50:07.128 -07 000000610 INF: WaitCommand(30000) end
17-03-17 23:50:07.128 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3) ===================
17-03-17 23:50:07.128 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 23:50:07.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:50:07.268 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:50:07.268 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:50:07.268 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:50:07.398 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 23:50:07.438 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:50:07.858 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.99219,
17-03-17 23:50:07.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:50:08.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:50:08.008 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 23:50:08.008 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3) ===================
17-03-17 23:50:08.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.19512,  FlowCellCompartmentTemperature: 65.01565, AmbientTemperature: 18.47928
17-03-17 23:50:08.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:50:08.168 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:50:08.168 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:50:08.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:50:08.328 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:50:08.328 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:50:08.328 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:50:08.458 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:50:08.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:50:08.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:50:08.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:50:08.948 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:50:08.948 -07 000000610 INF: =================== Cycle #79 ===================
17-03-17 23:50:08.948 -07 000000475 INF: WaitCommand(30000) start
17-03-17 23:50:08.948 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:50:08.948 -07 000000502 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:50:09.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.22278,  FlowCellCompartmentTemperature: 65.00773, AmbientTemperature: 18.48657
17-03-17 23:50:10.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.25045,  FlowCellCompartmentTemperature: 65.01036, AmbientTemperature: 18.48657
17-03-17 23:50:10.168 -07 000000502 INF: AsyncDelayTimer waited 1216ms
17-03-17 23:50:10.168 -07 000000502 INF: LanePump: Xmit /1?\r
17-03-17 23:50:10.198 -07 000000502 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:50:10.198 -07 000000502 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:50:10.328 -07 000000502 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:50:10.368 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:50:11.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.25045,  FlowCellCompartmentTemperature: 65.01036, AmbientTemperature: 18.48344
17-03-17 23:50:12.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.27506,  FlowCellCompartmentTemperature: 65.00773, AmbientTemperature: 18.48657
17-03-17 23:50:12.108 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:50:12.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1274, R2=1325, Total=2599. Warn if over 250 bubbles per interval.
17-03-17 23:50:12.708 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 23:50:13.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.27506,  FlowCellCompartmentTemperature: 65.00773, AmbientTemperature: 18.48657
17-03-17 23:50:13.418 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:50:13.718 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.024884,
17-03-17 23:50:13.838 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 23:50:13.868 -07 000000502 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:50:13.868 -07 000000502 INF: LanePump: Waited 3499 ms for pump motion to complete
17-03-17 23:50:13.868 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:50:13.868 -07 000000502 INF: ===================  ===================
17-03-17 23:50:14.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.2935,  FlowCellCompartmentTemperature: 65.00375, AmbientTemperature: 18.48031
17-03-17 23:50:15.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.33544,  FlowCellCompartmentTemperature: 65.00111, AmbientTemperature: 18.48031
17-03-17 23:50:16.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.33544,  FlowCellCompartmentTemperature: 65.00111, AmbientTemperature: 18.48554
17-03-17 23:50:17.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.36002,  FlowCellCompartmentTemperature: 65.00639, AmbientTemperature: 18.4876
17-03-17 23:50:17.108 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:50:17.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1274, R2=1325, Total=2599. Warn if over 250 bubbles per interval.
17-03-17 23:50:18.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.3866,  FlowCellCompartmentTemperature: 65.00639, AmbientTemperature: 18.4876
17-03-17 23:50:19.078 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.041198,
17-03-17 23:50:19.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.3866,  FlowCellCompartmentTemperature: 65.00639, AmbientTemperature: 18.48447
17-03-17 23:50:20.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.41011,  FlowCellCompartmentTemperature: 65.00906, AmbientTemperature: 18.49072
17-03-17 23:50:21.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.41828,  FlowCellCompartmentTemperature: 65.01434, AmbientTemperature: 18.48657
17-03-17 23:50:22.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.43873,  FlowCellCompartmentTemperature: 65.00906, AmbientTemperature: 18.48657
17-03-17 23:50:22.108 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:50:22.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1274, R2=1325, Total=2599. Warn if over 250 bubbles per interval.
17-03-17 23:50:23.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.43873,  FlowCellCompartmentTemperature: 65.00906, AmbientTemperature: 18.48966
17-03-17 23:50:24.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.46428,  FlowCellCompartmentTemperature: 65.00906, AmbientTemperature: 18.49278
17-03-17 23:50:24.438 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.004458,
17-03-17 23:50:25.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.47856,  FlowCellCompartmentTemperature: 65.00375, AmbientTemperature: 18.49488
17-03-17 23:50:26.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.50001,  FlowCellCompartmentTemperature: 65.00375, AmbientTemperature: 18.49488
17-03-17 23:50:27.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.50001,  FlowCellCompartmentTemperature: 65.00375, AmbientTemperature: 18.50007
17-03-17 23:50:27.108 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:50:27.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1274, R2=1325, Total=2599. Warn if over 250 bubbles per interval.
17-03-17 23:50:28.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.52554,  FlowCellCompartmentTemperature: 65.00375, AmbientTemperature: 18.49488
17-03-17 23:50:29.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.54389,  FlowCellCompartmentTemperature: 65.01167, AmbientTemperature: 18.50007
17-03-17 23:50:29.798 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.975845,
17-03-17 23:50:30.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.57146,  FlowCellCompartmentTemperature: 65.00639, AmbientTemperature: 18.50007
17-03-17 23:50:31.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.57146,  FlowCellCompartmentTemperature: 65.00639, AmbientTemperature: 18.50213
17-03-17 23:50:32.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.58674,  FlowCellCompartmentTemperature: 65.00506, AmbientTemperature: 18.50007
17-03-17 23:50:32.108 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:50:32.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1274, R2=1325, Total=2599. Warn if over 250 bubbles per interval.
17-03-17 23:50:33.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.60406,  FlowCellCompartmentTemperature: 65.00375, AmbientTemperature: 18.50213
17-03-17 23:50:34.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.60406,  FlowCellCompartmentTemperature: 65.00375, AmbientTemperature: 18.50213
17-03-17 23:50:35.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.61835,  FlowCellCompartmentTemperature: 65.00111, AmbientTemperature: 18.50423
17-03-17 23:50:35.158 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.999021,
17-03-17 23:50:36.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.63364,  FlowCellCompartmentTemperature: 65.01036, AmbientTemperature: 18.50629
17-03-17 23:50:37.108 -07 000000623 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.64589,  FlowCellCompartmentTemperature: 65.00244, AmbientTemperature: 18.50629
17-03-17 23:50:37.108 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:50:37.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1274, R2=1325, Total=2599. Warn if over 250 bubbles per interval.
17-03-17 23:50:38.108 -07 000000623 INF: FlowCellTempControl: Setting temperature polling rate to 00:00:05 ms
17-03-17 23:50:38.958 -07 000000475 INF: WaitCommand(30000) end
17-03-17 23:50:38.958 -07 000000610 INF: =================== Cycle #79, Flow Cell Temp 22° ===================
17-03-17 23:50:38.958 -07 000000610 INF: =================== Cycle #79, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 23:50:38.958 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 23:50:38.958 -07 000000459 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:50:38.968 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:50:38.968 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:50:38.968 -07 000000541 INF: FlowCellTempControl: Setting temperature polling rate to 00:00:01 ms
17-03-17 23:50:38.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 19.66522,  FlowCellCompartmentTemperature: 65.00506, AmbientTemperature: 18.51148
17-03-17 23:50:38.968 -07 000000459 INF: FPGA: Recv TEC2EN 
17-03-17 23:50:38.978 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:50:38.978 -07 000000610 INF: =================== Cycle #79, Flow Cell Temp 22° ===================
17-03-17 23:50:38.978 -07 000000610 INF: =================== Cycle #79 ===================
17-03-17 23:50:38.978 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3) ===================
17-03-17 23:50:38.978 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:50:38.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:50:39.028 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:50:39.028 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:50:39.028 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:50:39.158 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:50:39.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:50:39.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 19.66522,  FlowCellCompartmentTemperature: 65.00506, AmbientTemperature: 18.51148
17-03-17 23:50:40.518 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.999021,
17-03-17 23:50:40.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 19.66522,  FlowCellCompartmentTemperature: 65.00506, AmbientTemperature: 18.51148
17-03-17 23:50:41.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 19.66522,  FlowCellCompartmentTemperature: 65.00506, AmbientTemperature: 18.51148
17-03-17 23:50:42.108 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:50:42.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1274, R2=1325, Total=2599. Warn if over 250 bubbles per interval.
17-03-17 23:50:42.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:50:42.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:50:42.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:50:42.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:50:42.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 19.66522,  FlowCellCompartmentTemperature: 65.00506, AmbientTemperature: 18.51148
17-03-17 23:50:43.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:50:43.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:50:43.258 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:50:43.258 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3) ===================
17-03-17 23:50:43.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:50:43.418 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:50:43.418 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:50:43.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:50:43.578 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:50:43.578 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:50:43.578 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:50:43.708 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:50:43.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:50:43.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 21.34898,  FlowCellCompartmentTemperature: 48.83695, AmbientTemperature: 18.51045
17-03-17 23:50:44.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:50:44.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:50:44.198 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:50:44.198 -07 000000610 INF: =================== Cycle #79 ===================
17-03-17 23:50:44.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.07389,  FlowCellCompartmentTemperature: 44.44035, AmbientTemperature: 18.51045
17-03-17 23:50:45.418 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 23:50:45.418 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 23:50:45.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:50:45.438 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:50:45.438 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 23:50:45.438 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 23:50:45.588 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:50:45.608 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:50:45.608 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:50:45.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:50:45.678 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:50:45.678 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:50:45.778 -07 000000610 INF: =================== Cycle #79, Pumping Reagent USM (2) ===================
17-03-17 23:50:45.778 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:50:45.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:50:45.808 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:50:45.808 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:50:45.808 -07 000000610 INF: =================== Cycle #79, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 23:50:45.878 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.996267,
17-03-17 23:50:45.938 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:50:45.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.07389,  FlowCellCompartmentTemperature: 44.44035, AmbientTemperature: 18.51461
17-03-17 23:50:45.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:50:46.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.69481,  FlowCellCompartmentTemperature: 40.56981, AmbientTemperature: 18.5198
17-03-17 23:50:47.108 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 23:50:47.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:50:47.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:50:47.448 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:50:47.868 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:50:47.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:50:47.898 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:50:47.898 -07 000000610 INF: =================== Cycle #79, Pumping Reagent USM (2) ===================
17-03-17 23:50:47.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.22179,  FlowCellCompartmentTemperature: 37.11498, AmbientTemperature: 18.53018
17-03-17 23:50:48.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:50:48.058 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:50:48.058 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:50:48.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:50:48.218 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:50:48.218 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:50:48.218 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:50:48.348 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:50:48.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:50:48.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:50:48.838 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:50:48.838 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:50:48.838 -07 000000610 INF: =================== Cycle #79 ===================
17-03-17 23:50:48.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.22179,  FlowCellCompartmentTemperature: 37.11498, AmbientTemperature: 18.53018
17-03-17 23:50:49.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.67704,  FlowCellCompartmentTemperature: 33.95917, AmbientTemperature: 18.54056
17-03-17 23:50:50.058 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:50:50.058 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:50:50.058 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:50:50.078 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:50:50.078 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 23:50:50.078 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:50:50.228 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:50:50.248 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:50:50.248 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:50:50.298 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:50:50.318 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:50:50.318 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:50:50.418 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3) ===================
17-03-17 23:50:50.418 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:50:50.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:50:50.448 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:50:50.448 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:50:50.448 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:50:50.578 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:50:50.618 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:50:50.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.07311,  FlowCellCompartmentTemperature: 31.09476, AmbientTemperature: 18.54678
17-03-17 23:50:51.238 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.994908,
17-03-17 23:50:51.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:50:51.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:50:51.518 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:50:51.518 -07 000000610 INF: =================== Cycle #79, Pumping Reagent PR2 (3) ===================
17-03-17 23:50:51.648 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:50:51.678 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:50:51.678 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:50:51.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:50:51.838 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:50:51.838 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:50:51.838 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:50:51.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.42236,  FlowCellCompartmentTemperature: 28.48295, AmbientTemperature: 18.54678
17-03-17 23:50:51.968 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:50:51.998 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:50:52.108 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:50:52.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:50:52.428 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:50:52.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:50:52.458 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:50:52.458 -07 000000610 INF: =================== Cycle #79 ===================
17-03-17 23:50:52.458 -07 000000415 INF: WaitCommand(10000) start
17-03-17 23:50:52.458 -07 000000475 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:50:52.458 -07 000000475 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:50:52.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.42236,  FlowCellCompartmentTemperature: 28.48295, AmbientTemperature: 18.56235
17-03-17 23:50:53.678 -07 000000475 INF: AsyncDelayTimer waited 1216ms
17-03-17 23:50:53.678 -07 000000475 INF: LanePump: Xmit /1?\r
17-03-17 23:50:53.708 -07 000000475 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:50:53.708 -07 000000475 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:50:53.838 -07 000000475 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:50:53.878 -07 000000475 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:50:53.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.73781,  FlowCellCompartmentTemperature: 26.08963, AmbientTemperature: 18.57376
17-03-17 23:50:54.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 25.02643,  FlowCellCompartmentTemperature: 23.90218, AmbientTemperature: 18.58415
17-03-17 23:50:55.408 -07 000000475 INF: LanePump: Xmit /1Q\r
17-03-17 23:50:55.438 -07 000000475 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:50:55.858 -07 000000475 INF: LanePump: Xmit /1Q\r
17-03-17 23:50:55.888 -07 000000475 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:50:55.888 -07 000000475 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 23:50:55.888 -07 000000475 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:50:55.888 -07 000000475 INF: ===================  ===================
17-03-17 23:50:55.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 25.28276,  FlowCellCompartmentTemperature: 21.90816, AmbientTemperature: 18.58415
17-03-17 23:50:56.598 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.999021,
17-03-17 23:50:56.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 25.28276,  FlowCellCompartmentTemperature: 21.90816, AmbientTemperature: 18.59869
17-03-17 23:50:57.108 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:50:57.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:50:57.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 25.45622,  FlowCellCompartmentTemperature: 21.6702, AmbientTemperature: 18.6132
17-03-17 23:50:58.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 25.31918,  FlowCellCompartmentTemperature: 22.5345, AmbientTemperature: 18.6308
17-03-17 23:50:59.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 25.08507,  FlowCellCompartmentTemperature: 21.93874, AmbientTemperature: 18.6308
17-03-17 23:51:00.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 25.08507,  FlowCellCompartmentTemperature: 21.93874, AmbientTemperature: 18.64016
17-03-17 23:51:01.958 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.024884,
17-03-17 23:51:01.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.88606,  FlowCellCompartmentTemperature: 22.21442, AmbientTemperature: 18.65986
17-03-17 23:51:02.108 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:51:02.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:51:02.468 -07 000000415 INF: WaitCommand(10000) end
17-03-17 23:51:02.468 -07 000000610 INF: =================== Cycle #79, Imaging ===================
17-03-17 23:51:02.468 -07 000000610 INF: Imaging Cycle 79: ScanTilesCommand Cycle 79 time start.
17-03-17 23:51:02.468 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 23:51:02.468 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:51:02.498 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:51:02.498 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 23:51:02.498 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 23:51:02.798 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:51:02.818 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:51:02.818 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:51:02.868 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:51:02.888 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:51:02.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:02.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:02.888 -07 000000478 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 23:51:02.888 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:02.888 -07 000000478 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 23:51:02.888 -07 000000547 INF: FPGA: Recv EXLED1ON 
17-03-17 23:51:02.898 -07 000000478 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:51:02.908 -07 000000478 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 23:51:02.908 -07 000000429 INF: FPGA: Recv EXLED1ADCR 22985
17-03-17 23:51:02.918 -07 000000478 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:51:02.918 -07 000000478 INF: RedLED: Using Red data: Photodiode ADC 22985 --> 7.4 mW (old method), or 203.8 mW (new method). Difference = 196.4 mW
17-03-17 23:51:02.938 -07 000000478 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 23:51:02.938 -07 000000429 INF: FPGA: Recv EXLED1OFF 
17-03-17 23:51:02.948 -07 000000478 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:51:02.948 -07 000000478 INF: RedLED: LED was on for 50 ms
17-03-17 23:51:02.948 -07 000000478 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 53 ms.
17-03-17 23:51:02.948 -07 000000478 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 23:51:02.948 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:02.958 -07 000000478 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 23:51:02.958 -07 000000502 INF: FPGA: Recv EXLED2ON 
17-03-17 23:51:02.968 -07 000000478 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:51:02.968 -07 000000478 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 23:51:02.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.67324,  FlowCellCompartmentTemperature: 22.0216, AmbientTemperature: 18.67124
17-03-17 23:51:02.968 -07 000000547 INF: FPGA: Recv EXLED1ADCR 2096
17-03-17 23:51:02.978 -07 000000478 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:02.978 -07 000000478 INF: GreenLED: Using Green data: Photodiode ADC 2096 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.2 mW
17-03-17 23:51:02.988 -07 000000478 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 23:51:02.988 -07 000000415 INF: FPGA: Recv EXLED2OFF 
17-03-17 23:51:02.998 -07 000000478 INF: FPGA: 'EXLED2OFF' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:51:02.998 -07 000000478 INF: GreenLED: LED was on for 30 ms
17-03-17 23:51:02.998 -07 000000478 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 48 ms.
17-03-17 23:51:02.998 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:51:02.998 -07 000000547 INF: FPGA: Recv EMCUR 
17-03-17 23:51:03.008 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:51:03.008 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 23:51:03.508 -07 000000547 INF: FPGA: Recv EMOUT
17-03-17 23:51:03.508 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 23:51:03.508 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 23:51:03.508 -07 000000547 INF: FPGA: Recv EMCUR 
17-03-17 23:51:03.518 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:51:03.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:51:03.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126342838787965. ------
17-03-17 23:51:03.518 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:03.518 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17876 mm
17-03-17 23:51:03.518 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:51:03.518 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:03.528 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:51:03.528 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:51:03.528 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 39050, sync = True, waitForSettling = False)
17-03-17 23:51:03.528 -07 000000502 INF: Z Motor: Moving to -0.178759 mm, started at -0.126343 mm, distance = -52.42 um
17-03-17 23:51:03.528 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:51:03.528 -07 000000459 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-17 23:51:03.538 -07 000000502 INF: FPGA: Xmit ZDACW 39050\n [Z Motor]
17-03-17 23:51:03.538 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:51:03.548 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:03.548 -07 000000502 INF: FPGA: 'ZDACW 39050' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:51:03.548 -07 000000478 INF: FPGA: Recv YRDPOS 154387
17-03-17 23:51:03.558 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 23:51:03.558 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:03.558 -07 000000459 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:03.558 -07 000000459 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 23:51:03.558 -07 000000459 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:51:03.558 -07 000000547 INF: FPGA: Recv ZDACR 39050
17-03-17 23:51:03.568 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:51:03.568 -07 000000459 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:51:03.568 -07 000000502 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 23:51:03.728 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:51:03.728 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 23:51:03.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.67324,  FlowCellCompartmentTemperature: 22.0216, AmbientTemperature: 18.67124
17-03-17 23:51:04.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.48225,  FlowCellCompartmentTemperature: 22.13188, AmbientTemperature: 18.68679
17-03-17 23:51:05.248 -07 000000478 INF: FPGA: Recv YMVTO 122703 24782
17-03-17 23:51:05.248 -07 000000459 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1695 ms overall
17-03-17 23:51:05.248 -07 000000459 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:51:05.248 -07 000000459 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24782 steps (15.489 mm). Slippage = 0.017 mm (0.00%).
17-03-17 23:51:05.248 -07 000000459 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1695 ms, distance = 15.472 mm, average velocity = 9.128 mm/sec
17-03-17 23:51:05.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.30832,  FlowCellCompartmentTemperature: 22.03758, AmbientTemperature: 18.70234
17-03-17 23:51:06.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.16027,  FlowCellCompartmentTemperature: 22.07678, AmbientTemperature: 18.70234
17-03-17 23:51:07.108 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:51:07.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:51:07.338 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.030322,
17-03-17 23:51:07.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.16027,  FlowCellCompartmentTemperature: 22.07678, AmbientTemperature: 18.7044
17-03-17 23:51:08.098 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:08.098 -07 000000415 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:51:08.108 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:08.108 -07 000000459 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:08.128 -07 000000459 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:51:08.128 -07 000000459 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 23:51:08.128 -07 000000459 INF: Y Motor: Moved to 59.9111 after 4606 ms
17-03-17 23:51:08.138 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178759 mm (DAC = 39050)
17-03-17 23:51:08.138 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:08.138 -07 000000547 INF: FPGA: Recv ZSGSRD 37119
17-03-17 23:51:08.148 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:08.148 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:08.148 -07 000000459 INF: FPGA: Recv ZSGSRD 37112
17-03-17 23:51:08.158 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:08.158 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:08.158 -07 000000448 INF: FPGA: Recv ZSGSRD 37121
17-03-17 23:51:08.168 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:08.168 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:08.168 -07 000000547 INF: FPGA: Recv ZSGSRD 37113
17-03-17 23:51:08.178 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:08.178 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:08.178 -07 000000459 INF: FPGA: Recv ZSGSRD 37116
17-03-17 23:51:08.188 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:08.188 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:08.188 -07 000000415 INF: FPGA: Recv ZSGSRD 37113
17-03-17 23:51:08.198 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:08.198 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:08.198 -07 000000547 INF: FPGA: Recv ZSGSRD 37117
17-03-17 23:51:08.208 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:08.208 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:08.208 -07 000000415 INF: FPGA: Recv ZSGSRD 37120
17-03-17 23:51:08.218 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:08.218 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:08.218 -07 000000459 INF: FPGA: Recv ZSGSRD 37118
17-03-17 23:51:08.228 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:08.228 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:08.228 -07 000000415 INF: FPGA: Recv ZSGSRD 37117
17-03-17 23:51:08.238 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:08.238 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:08.238 -07 000000459 INF: FPGA: Recv ZPIEZORD 33215
17-03-17 23:51:08.248 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:08.248 -07 000000623 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.959 V. Piezo Error = -8.6 V.
17-03-17 23:51:08.248 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37117 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37117 (-177.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37112 (-177.8 uncal um), Max = 37121 (-177.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:51:08.248 -07 000000623 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37117, posNoise = 4, negNoise = 5
17-03-17 23:51:08.248 -07 000000623 INF: Z Motor: After move to -0.178759, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:08.248 -07 000000623 INF: Z Motor: Settle wait time = 4611 ms, measure time = 108 ms (allowed 150 ms), total time = 4719 ms
17-03-17 23:51:08.248 -07 000000623 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:51:08.298 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4775 ms
17-03-17 23:51:08.298 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:51:08.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:08.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:08.298 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:08.298 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:08.298 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:51:08.298 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:08.298 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:08.298 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:51:08.328 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 23:51:08.328 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:51:08.328 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:51:08.328 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:51:08.338 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:51:08.338 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 23:51:08.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:51:08.388 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:51:08.688 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:51:08.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:51:08.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:51:08.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:51:08.728 -07 000000448 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:51:08.728 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 23:51:08.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-17 23:51:08.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:51:08.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:08.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:51:08.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:51:08.928 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:08.928 -07 000000448 INF: Image SNR check: start
17-03-17 23:51:08.928 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:08.938 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:51:08.938 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:51:08.938 -07 000000448 INF: Image SNR check: pass  [peak (Max-Min)=190.45]
17-03-17 23:51:08.938 -07 000000448 INF: Autofocus start
17-03-17 23:51:08.938 -07 000000448 INF: MeasureProfile start
17-03-17 23:51:08.958 -07 000000448 INF: MeasureProfile done
17-03-17 23:51:08.958 -07 000000448 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:51:08.958 -07 000000448 INF: Autofocus finished
17-03-17 23:51:08.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.01882,  FlowCellCompartmentTemperature: 22.03469, AmbientTemperature: 18.71372
17-03-17 23:51:09.138 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:51:09.138 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 206 ms overall
17-03-17 23:51:09.148 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.178770834076876. ----------
17-03-17 23:51:09.148 -07 000000610 INF: Cycle	79	Tile	1	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:51:09.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37530, sync = True, waitForSettling = True)
17-03-17 23:51:09.148 -07 000000610 INF: Z Motor: Moving to -0.171801 mm, started at -0.178771 mm, distance = 6.97 um
17-03-17 23:51:09.148 -07 000000610 INF: FPGA: Xmit ZDACW 37530\n [Z Motor]
17-03-17 23:51:09.148 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:51:09.158 -07 000000610 INF: FPGA: 'ZDACW 37530' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:51:09.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:09.158 -07 000000623 INF: FPGA: Recv ZDACR 37530
17-03-17 23:51:09.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:09.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:51:09.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:09.318 -07 000000415 INF: FPGA: Recv ZSGSRD 36034
17-03-17 23:51:09.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:09.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:09.328 -07 000000448 INF: FPGA: Recv ZSGSRD 36033
17-03-17 23:51:09.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:09.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:09.338 -07 000000547 INF: FPGA: Recv ZSGSRD 36040
17-03-17 23:51:09.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:09.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:09.348 -07 000000415 INF: FPGA: Recv ZSGSRD 36032
17-03-17 23:51:09.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:09.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:09.358 -07 000000459 INF: FPGA: Recv ZSGSRD 36029
17-03-17 23:51:09.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:09.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:09.368 -07 000000429 INF: FPGA: Recv ZSGSRD 36035
17-03-17 23:51:09.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:09.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:09.378 -07 000000547 INF: FPGA: Recv ZSGSRD 36031
17-03-17 23:51:09.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:09.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:09.388 -07 000000478 INF: FPGA: Recv ZSGSRD 36037
17-03-17 23:51:09.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:09.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:09.398 -07 000000547 INF: FPGA: Recv ZSGSRD 36029
17-03-17 23:51:09.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:09.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:09.408 -07 000000415 INF: FPGA: Recv ZSGSRD 36036
17-03-17 23:51:09.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:09.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:09.418 -07 000000478 INF: FPGA: Recv ZPIEZORD 31824
17-03-17 23:51:09.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:09.428 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.727 V. Piezo Error = -9.3 V.
17-03-17 23:51:09.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36034 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36034 (-170.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36029 (-170.9 uncal um), Max = 36040 (-171.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:51:09.428 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36034, posNoise = 6, negNoise = 5
17-03-17 23:51:09.428 -07 000000610 INF: Z Motor: After move to -0.171801, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:09.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:51:09.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:09.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:09.428 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:09.428 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:09.428 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:51:09.428 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:51:09.428 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:51:09.428 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:09.428 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:51:09.428 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:51:09.428 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:09.428 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:51:09.428 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:51:09.438 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:51:09.448 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:51:09.448 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:51:09.448 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 23:51:09.448 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:51:09.458 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:51:09.458 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:51:09.468 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 23:51:09.468 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 23:51:09.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37707 150\n [Camera]
17-03-17 23:51:09.668 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:51:09.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.90245,  FlowCellCompartmentTemperature: 22.04194, AmbientTemperature: 18.72614
17-03-17 23:51:10.708 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:51:10.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:51:10.708 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:10.708 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:51:10.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:51:10.708 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:10.708 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:10.708 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:51:10.708 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:10.708 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:51:10.898 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37707 1422
17-03-17 23:51:10.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.76745,  FlowCellCompartmentTemperature: 22.08693, AmbientTemperature: 18.72614
17-03-17 23:51:11.048 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:51:11.108 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:51:11.108 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:51:11.108 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:11.118 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:51:11.118 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:51:11.118 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:11.118 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:51:11.118 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:51:11.128 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:51:11.128 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 23:51:11.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:51:11.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:51:11.548 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:11.658 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:51:11.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:51:11.658 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:11.658 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:51:11.658 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:11.668 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:11.668 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:51:11.738 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 2266
17-03-17 23:51:11.748 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:51:11.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37707 150' command took 2 ms to send, 2270 ms to get response, and 2273 ms overall
17-03-17 23:51:11.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:51:11.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.171813412327349. ------
17-03-17 23:51:11.748 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:11.748 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17770 mm
17-03-17 23:51:11.748 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:51:11.748 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:51:11.748 -07 000000551 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 23:51:11.748 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38818, sync = True, waitForSettling = False)
17-03-17 23:51:11.748 -07 000000478 INF: Z Motor: Moving to -0.177697 mm, started at -0.171813 mm, distance = -5.88 um
17-03-17 23:51:11.748 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:11.758 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:51:11.758 -07 000000478 INF: FPGA: Xmit ZDACW 38818\n [Z Motor]
17-03-17 23:51:11.758 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:51:11.768 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:11.768 -07 000000478 INF: FPGA: 'ZDACW 38818' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:51:11.768 -07 000000448 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:51:11.778 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:51:11.778 -07 000000551 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:11.778 -07 000000551 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:51:11.778 -07 000000551 INF: Y Motor: Moving 1330 steps2
17-03-17 23:51:11.778 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:51:11.788 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:11.788 -07 000000448 INF: FPGA: Recv ZDACR 38818
17-03-17 23:51:11.798 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:51:11.798 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:51:11.798 -07 000000478 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 23:51:11.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.76745,  FlowCellCompartmentTemperature: 22.08693, AmbientTemperature: 18.73237
17-03-17 23:51:11.978 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:51:11.978 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 23:51:12.058 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:51:12.058 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:51:12.058 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:12.058 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:12.058 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:51:12.058 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:51:12.058 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:12.068 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:12.068 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 23:51:12.068 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:51:12.108 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:51:12.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:51:12.168 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 23:51:12.168 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 23:51:12.208 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:12.208 -07 000000478 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:51:12.218 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:51:12.218 -07 000000551 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:12.218 -07 000000551 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:51:12.218 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.831 mm, average velocity = 2.089 mm/sec
17-03-17 23:51:12.778 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.039839,
17-03-17 23:51:12.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.65952,  FlowCellCompartmentTemperature: 21.99544, AmbientTemperature: 18.73959
17-03-17 23:51:13.168 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:13.168 -07 000000502 INF: FPGA: Recv YRDPOS 124382
17-03-17 23:51:13.178 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:13.178 -07 000000551 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:13.198 -07 000000551 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:51:13.198 -07 000000551 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:51:13.198 -07 000000551 INF: Y Motor: Moved to 60.7334 after 1449 ms (table move)
17-03-17 23:51:13.198 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177697 mm (DAC = 38818)
17-03-17 23:51:13.208 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:13.208 -07 000000478 INF: FPGA: Recv ZSGSRD 36954
17-03-17 23:51:13.218 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:13.218 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:13.218 -07 000000501 INF: FPGA: Recv ZSGSRD 36948
17-03-17 23:51:13.228 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:13.228 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:13.228 -07 000000448 INF: FPGA: Recv ZSGSRD 36952
17-03-17 23:51:13.238 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:13.238 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:13.238 -07 000000551 INF: FPGA: Recv ZSGSRD 36955
17-03-17 23:51:13.248 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:13.248 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:13.248 -07 000000623 INF: FPGA: Recv ZSGSRD 36958
17-03-17 23:51:13.258 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:13.258 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:13.258 -07 000000448 INF: FPGA: Recv ZSGSRD 36959
17-03-17 23:51:13.268 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:13.268 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:13.268 -07 000000501 INF: FPGA: Recv ZSGSRD 36946
17-03-17 23:51:13.278 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:13.278 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:13.278 -07 000000551 INF: FPGA: Recv ZSGSRD 36951
17-03-17 23:51:13.288 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:13.288 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:13.288 -07 000000502 INF: FPGA: Recv ZSGSRD 36954
17-03-17 23:51:13.298 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:13.298 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:13.298 -07 000000551 INF: FPGA: Recv ZSGSRD 36951
17-03-17 23:51:13.308 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:13.308 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:13.308 -07 000000478 INF: FPGA: Recv ZPIEZORD 33057
17-03-17 23:51:13.318 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:13.318 -07 000000475 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.923 V. Piezo Error = -8.6 V.
17-03-17 23:51:13.318 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36953 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36953 (-176.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36946 (-176.8 uncal um), Max = 36959 (-176.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:51:13.318 -07 000000475 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36953, posNoise = 6, negNoise = 7
17-03-17 23:51:13.318 -07 000000475 INF: Z Motor: After move to -0.177697, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:13.318 -07 000000475 INF: Z Motor: Settle wait time = 1451 ms, measure time = 112 ms (allowed 150 ms), total time = 1563 ms
17-03-17 23:51:13.318 -07 000000475 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 23:51:13.358 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 23:51:13.358 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:51:13.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:13.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:13.358 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:13.358 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:13.358 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:51:13.358 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:13.358 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:13.358 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:51:13.358 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:51:13.358 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:51:13.378 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:51:13.378 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:51:13.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:51:13.428 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:51:13.728 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:51:13.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:51:13.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:51:13.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-17 23:51:13.768 -07 000000623 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:51:13.768 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 23:51:13.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-17 23:51:13.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 23:51:13.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:13.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:51:13.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:51:13.868 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:13.868 -07 000000551 INF: Autofocus start
17-03-17 23:51:13.868 -07 000000551 INF: MeasureProfile start
17-03-17 23:51:13.868 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:13.878 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:51:13.878 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:51:13.878 -07 000000551 INF: MeasureProfile done
17-03-17 23:51:13.878 -07 000000551 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:51:13.878 -07 000000551 INF: Autofocus finished
17-03-17 23:51:13.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.54466,  FlowCellCompartmentTemperature: 22.07387, AmbientTemperature: 18.75098
17-03-17 23:51:14.078 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:51:14.078 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 23:51:14.078 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.177717263285628. ----------
17-03-17 23:51:14.088 -07 000000610 INF: Cycle	79	Tile	2	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:51:14.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37298, sync = True, waitForSettling = True)
17-03-17 23:51:14.088 -07 000000610 INF: Z Motor: Moving to -0.170739 mm, started at -0.177717 mm, distance = 6.98 um
17-03-17 23:51:14.088 -07 000000610 INF: FPGA: Xmit ZDACW 37298\n [Z Motor]
17-03-17 23:51:14.088 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:51:14.098 -07 000000610 INF: FPGA: 'ZDACW 37298' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:51:14.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:14.098 -07 000000623 INF: FPGA: Recv ZDACR 37298
17-03-17 23:51:14.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:14.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:51:14.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:14.258 -07 000000478 INF: FPGA: Recv ZSGSRD 35872
17-03-17 23:51:14.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:14.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:14.268 -07 000000502 INF: FPGA: Recv ZSGSRD 35868
17-03-17 23:51:14.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:14.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:14.278 -07 000000501 INF: FPGA: Recv ZSGSRD 35867
17-03-17 23:51:14.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:14.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:14.288 -07 000000478 INF: FPGA: Recv ZSGSRD 35870
17-03-17 23:51:14.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:14.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:14.298 -07 000000623 INF: FPGA: Recv ZSGSRD 35865
17-03-17 23:51:14.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:14.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:14.308 -07 000000547 INF: FPGA: Recv ZSGSRD 35872
17-03-17 23:51:14.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:14.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:14.318 -07 000000551 INF: FPGA: Recv ZSGSRD 35875
17-03-17 23:51:14.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:14.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:14.328 -07 000000478 INF: FPGA: Recv ZSGSRD 35860
17-03-17 23:51:14.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:14.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:14.338 -07 000000547 INF: FPGA: Recv ZSGSRD 35871
17-03-17 23:51:14.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:14.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:14.348 -07 000000501 INF: FPGA: Recv ZSGSRD 35868
17-03-17 23:51:14.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:14.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:14.358 -07 000000623 INF: FPGA: Recv ZPIEZORD 31599
17-03-17 23:51:14.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:14.368 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -9.4 V.
17-03-17 23:51:14.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35869 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35869 (-169.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35860 (-169.8 uncal um), Max = 35875 (-169.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:51:14.368 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35869, posNoise = 6, negNoise = 9
17-03-17 23:51:14.368 -07 000000610 INF: Z Motor: After move to -0.170739, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:14.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:51:14.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:14.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:14.368 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:14.368 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:51:14.368 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:51:14.368 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:14.368 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:51:14.368 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:14.368 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:51:14.368 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:51:14.368 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:14.368 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:51:14.378 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:51:14.378 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:51:14.378 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:51:14.378 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:51:14.388 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:51:14.388 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:51:14.388 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 23:51:14.388 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:51:14.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37475 150\n [Camera]
17-03-17 23:51:14.598 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:51:14.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.43746,  FlowCellCompartmentTemperature: 21.96782, AmbientTemperature: 18.75098
17-03-17 23:51:15.638 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:51:15.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:51:15.638 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:15.638 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:15.638 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:51:15.638 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:51:15.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:51:15.638 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:15.638 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:15.638 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:51:15.828 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37475 1422
17-03-17 23:51:15.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.43746,  FlowCellCompartmentTemperature: 21.96782, AmbientTemperature: 18.75304
17-03-17 23:51:15.978 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:51:16.038 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:51:16.038 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:51:16.038 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:16.038 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:16.038 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:51:16.038 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:51:16.038 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:51:16.038 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:16.048 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:16.048 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:51:16.478 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:51:16.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:51:16.478 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:16.478 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:51:16.478 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:16.478 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:51:16.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:51:16.478 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:16.478 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:16.478 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:51:16.668 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:51:16.668 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:51:16.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37475 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:51:16.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:51:16.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.170753417323959. ------
17-03-17 23:51:16.668 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:16.668 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17743 mm
17-03-17 23:51:16.668 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:51:16.678 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:51:16.678 -07 000000623 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 23:51:16.678 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:16.678 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38759, sync = True, waitForSettling = False)
17-03-17 23:51:16.678 -07 000000547 INF: Z Motor: Moving to -0.177427 mm, started at -0.170753 mm, distance = -6.67 um
17-03-17 23:51:16.678 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:16.678 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:51:16.788 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:51:16.788 -07 000000478 INF: FPGA: Recv YRDPOS 124382
17-03-17 23:51:16.788 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 115 ms overall
17-03-17 23:51:16.788 -07 000000623 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:16.788 -07 000000623 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:51:16.788 -07 000000623 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:51:16.798 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:51:16.808 -07 000000547 INF: FPGA: Xmit ZDACW 38759\n [Z Motor]
17-03-17 23:51:16.808 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:51:16.818 -07 000000547 INF: FPGA: 'ZDACW 38759' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 23:51:16.818 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:16.818 -07 000000478 INF: FPGA: Recv ZDACR 38759
17-03-17 23:51:16.828 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:16.828 -07 000000547 INF: Z Motor: MoveAbsStepped took 149 ms (did NOT wait for settling yet))
17-03-17 23:51:16.878 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:51:16.878 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:51:16.878 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:16.878 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:51:16.878 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:51:16.878 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:16.878 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:51:16.878 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:51:16.878 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:51:16.888 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 23:51:16.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.32433,  FlowCellCompartmentTemperature: 22.08403, AmbientTemperature: 18.7603
17-03-17 23:51:16.988 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:51:16.988 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 317 ms overall
17-03-17 23:51:17.108 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:51:17.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:51:17.168 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 23:51:17.168 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 23:51:17.208 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:17.218 -07 000000512 INF: FPGA: Recv YRDPOS 126082
17-03-17 23:51:17.228 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:17.228 -07 000000623 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:17.228 -07 000000623 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:51:17.228 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.839 mm, average velocity = 2.203 mm/sec
17-03-17 23:51:17.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.23353,  FlowCellCompartmentTemperature: 21.95182, AmbientTemperature: 18.76442
17-03-17 23:51:18.178 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:18.178 -07 000000512 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:51:18.188 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:18.188 -07 000000623 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:18.208 -07 000000623 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:51:18.208 -07 000000623 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:51:18.208 -07 000000623 INF: Y Motor: Moved to 61.5640 after 1538 ms (table move)
17-03-17 23:51:18.218 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.004458,
17-03-17 23:51:18.218 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177427 mm (DAC = 38759)
17-03-17 23:51:18.238 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:18.238 -07 000000478 INF: FPGA: Recv ZSGSRD 36911
17-03-17 23:51:18.248 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:51:18.268 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:18.268 -07 000000501 INF: FPGA: Recv ZSGSRD 36913
17-03-17 23:51:18.278 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:51:18.278 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:18.278 -07 000000547 INF: FPGA: Recv ZSGSRD 36914
17-03-17 23:51:18.288 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:18.288 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:18.288 -07 000000501 INF: FPGA: Recv ZSGSRD 36903
17-03-17 23:51:18.298 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:18.298 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:18.298 -07 000000623 INF: FPGA: Recv ZSGSRD 36901
17-03-17 23:51:18.308 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:18.308 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:18.308 -07 000000502 INF: FPGA: Recv ZSGSRD 36911
17-03-17 23:51:18.318 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:18.318 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:18.318 -07 000000448 INF: FPGA: Recv ZSGSRD 36908
17-03-17 23:51:18.328 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:18.328 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:18.328 -07 000000512 INF: FPGA: Recv ZSGSRD 36913
17-03-17 23:51:18.338 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:18.338 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:18.338 -07 000000623 INF: FPGA: Recv ZSGSRD 36914
17-03-17 23:51:18.348 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:18.348 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:18.348 -07 000000502 INF: FPGA: Recv ZSGSRD 36913
17-03-17 23:51:18.358 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:18.358 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:18.358 -07 000000623 INF: FPGA: Recv ZPIEZORD 33021
17-03-17 23:51:18.368 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:18.368 -07 000000551 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.914 V. Piezo Error = -8.6 V.
17-03-17 23:51:18.368 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36910 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36912 (-176.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36901 (-176.5 uncal um), Max = 36914 (-176.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:51:18.368 -07 000000551 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36910, posNoise = 4, negNoise = 9
17-03-17 23:51:18.368 -07 000000551 INF: Z Motor: After move to -0.177427, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:18.368 -07 000000551 INF: Z Motor: Settle wait time = 1542 ms, measure time = 147 ms (allowed 150 ms), total time = 1689 ms
17-03-17 23:51:18.368 -07 000000551 INF: Z Motor: Waiting extra 3 ms after reading position to reach expected total of 150 ms
17-03-17 23:51:18.378 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1702 ms
17-03-17 23:51:18.378 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:51:18.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:18.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:18.378 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:18.378 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:18.378 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:51:18.378 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:18.378 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:51:18.378 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:51:18.388 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:51:18.388 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:51:18.388 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:51:18.388 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:51:18.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:51:18.438 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:51:18.738 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:51:18.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:51:18.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:51:18.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:51:18.778 -07 000000448 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:51:18.778 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 23:51:18.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-17 23:51:18.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:51:18.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:18.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:51:18.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:51:18.878 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:18.878 -07 000000448 INF: Autofocus start
17-03-17 23:51:18.878 -07 000000448 INF: MeasureProfile start
17-03-17 23:51:18.878 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:18.888 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:51:18.888 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:51:18.888 -07 000000448 INF: MeasureProfile done
17-03-17 23:51:18.888 -07 000000448 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:51:18.888 -07 000000448 INF: Autofocus finished
17-03-17 23:51:18.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.12407,  FlowCellCompartmentTemperature: 22.11883, AmbientTemperature: 18.76442
17-03-17 23:51:19.088 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:51:19.088 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:51:19.088 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.177441022163532. ----------
17-03-17 23:51:19.088 -07 000000610 INF: Cycle	79	Tile	3	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:51:19.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37274, sync = True, waitForSettling = True)
17-03-17 23:51:19.098 -07 000000610 INF: Z Motor: Moving to -0.170629 mm, started at -0.177441 mm, distance = 6.81 um
17-03-17 23:51:19.098 -07 000000610 INF: FPGA: Xmit ZDACW 37274\n [Z Motor]
17-03-17 23:51:19.098 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:51:19.108 -07 000000610 INF: FPGA: 'ZDACW 37274' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:19.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:19.108 -07 000000448 INF: FPGA: Recv ZDACR 37274
17-03-17 23:51:19.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:19.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:51:19.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:19.268 -07 000000551 INF: FPGA: Recv ZSGSRD 35853
17-03-17 23:51:19.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:19.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:19.278 -07 000000547 INF: FPGA: Recv ZSGSRD 35854
17-03-17 23:51:19.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:19.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:19.298 -07 000000551 INF: FPGA: Recv ZSGSRD 35849
17-03-17 23:51:19.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:51:19.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:19.308 -07 000000502 INF: FPGA: Recv ZSGSRD 35855
17-03-17 23:51:19.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:19.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:19.328 -07 000000501 INF: FPGA: Recv ZSGSRD 35854
17-03-17 23:51:19.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:51:19.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:19.338 -07 000000448 INF: FPGA: Recv ZSGSRD 35845
17-03-17 23:51:19.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:19.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:19.358 -07 000000502 INF: FPGA: Recv ZSGSRD 35855
17-03-17 23:51:19.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:51:19.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:19.368 -07 000000448 INF: FPGA: Recv ZSGSRD 35851
17-03-17 23:51:19.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:19.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:19.388 -07 000000502 INF: FPGA: Recv ZSGSRD 35849
17-03-17 23:51:19.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:51:19.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:19.398 -07 000000547 INF: FPGA: Recv ZSGSRD 35851
17-03-17 23:51:19.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:19.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:19.408 -07 000000478 INF: FPGA: Recv ZPIEZORD 31571
17-03-17 23:51:19.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:19.418 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.688 V. Piezo Error = -9.4 V.
17-03-17 23:51:19.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35852 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35852 (-169.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35845 (-169.7 uncal um), Max = 35855 (-169.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:51:19.418 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35852, posNoise = 3, negNoise = 7
17-03-17 23:51:19.418 -07 000000610 INF: Z Motor: After move to -0.170629, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:19.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 321 ms)
17-03-17 23:51:19.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:19.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:19.418 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:19.418 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:19.418 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:51:19.418 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:19.418 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:51:19.418 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:51:19.418 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:19.418 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:51:19.418 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:51:19.418 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:51:19.418 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:51:19.428 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:51:19.428 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:51:19.428 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:51:19.438 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:51:19.438 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:51:19.438 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:51:19.438 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:51:19.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37451 150\n [Camera]
17-03-17 23:51:19.648 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 23:51:19.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.12407,  FlowCellCompartmentTemperature: 22.11883, AmbientTemperature: 18.76756
17-03-17 23:51:20.678 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:51:20.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:51:20.678 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:20.688 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:51:20.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:51:20.688 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:20.688 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:20.688 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:51:20.688 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:20.688 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:51:20.878 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37451 1422
17-03-17 23:51:20.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.01743,  FlowCellCompartmentTemperature: 21.93001, AmbientTemperature: 18.77478
17-03-17 23:51:21.018 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:51:21.078 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:51:21.078 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:51:21.078 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:21.088 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:21.088 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:51:21.088 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:51:21.088 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:51:21.088 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:21.088 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:21.098 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:51:21.528 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:51:21.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:51:21.528 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:21.528 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:21.528 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:51:21.528 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:51:21.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:51:21.528 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:21.528 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:21.528 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:51:21.718 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:51:21.718 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:51:21.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37451 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:51:21.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:51:21.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.170644205717549. ------
17-03-17 23:51:21.718 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:21.718 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17694 mm
17-03-17 23:51:21.718 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:51:21.728 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:51:21.728 -07 000000459 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 23:51:21.728 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:21.728 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38653, sync = True, waitForSettling = False)
17-03-17 23:51:21.728 -07 000000551 INF: Z Motor: Moving to -0.176942 mm, started at -0.170644 mm, distance = -6.30 um
17-03-17 23:51:21.728 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:21.728 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:51:21.728 -07 000000502 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:51:21.738 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:21.738 -07 000000459 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:21.738 -07 000000459 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:51:21.738 -07 000000459 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:51:21.738 -07 000000551 INF: FPGA: Xmit ZDACW 38653\n [Z Motor]
17-03-17 23:51:21.738 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:51:21.748 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:51:21.748 -07 000000551 INF: FPGA: 'ZDACW 38653' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:51:21.758 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:51:21.778 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:21.778 -07 000000502 INF: FPGA: Recv ZDACR 38653
17-03-17 23:51:21.788 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 23:51:21.788 -07 000000551 INF: Z Motor: MoveAbsStepped took 58 ms (did NOT wait for settling yet))
17-03-17 23:51:21.918 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:51:21.918 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:51:21.918 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:21.928 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:51:21.928 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:51:21.928 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:21.928 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:51:21.928 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:51:21.928 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:51:21.938 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:51:21.948 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:51:21.948 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 23:51:21.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.9087,  FlowCellCompartmentTemperature: 22.13477, AmbientTemperature: 18.77478
17-03-17 23:51:22.108 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:51:22.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:51:22.128 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 23:51:22.128 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:51:22.178 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:22.178 -07 000000501 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:51:22.188 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:22.188 -07 000000459 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:22.188 -07 000000459 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 23:51:22.188 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-17 23:51:22.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.9087,  FlowCellCompartmentTemperature: 22.13477, AmbientTemperature: 18.77685
17-03-17 23:51:23.138 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:23.138 -07 000000429 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:51:23.148 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:23.148 -07 000000459 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:23.168 -07 000000459 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:51:23.168 -07 000000459 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:51:23.168 -07 000000459 INF: Y Motor: Moved to 62.3955 after 1446 ms (table move)
17-03-17 23:51:23.178 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176942 mm (DAC = 38653)
17-03-17 23:51:23.178 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:23.178 -07 000000551 INF: FPGA: Recv ZSGSRD 36829
17-03-17 23:51:23.188 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:23.188 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:23.188 -07 000000512 INF: FPGA: Recv ZSGSRD 36840
17-03-17 23:51:23.198 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:23.198 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:23.198 -07 000000448 INF: FPGA: Recv ZSGSRD 36835
17-03-17 23:51:23.208 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:23.208 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:23.208 -07 000000429 INF: FPGA: Recv ZSGSRD 36835
17-03-17 23:51:23.218 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:23.218 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:23.218 -07 000000502 INF: FPGA: Recv ZSGSRD 36834
17-03-17 23:51:23.228 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:23.228 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:23.228 -07 000000459 INF: FPGA: Recv ZSGSRD 36832
17-03-17 23:51:23.238 -07 000000547 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:51:23.238 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:23.238 -07 000000623 INF: FPGA: Recv ZSGSRD 36837
17-03-17 23:51:23.248 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:23.248 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:23.248 -07 000000429 INF: FPGA: Recv ZSGSRD 36826
17-03-17 23:51:23.258 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:23.258 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:23.258 -07 000000448 INF: FPGA: Recv ZSGSRD 36829
17-03-17 23:51:23.268 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:23.278 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:23.278 -07 000000459 INF: FPGA: Recv ZSGSRD 36841
17-03-17 23:51:23.288 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:51:23.288 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:23.288 -07 000000448 INF: FPGA: Recv ZPIEZORD 32934
17-03-17 23:51:23.298 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:23.298 -07 000000547 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.898 V. Piezo Error = -8.6 V.
17-03-17 23:51:23.298 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36834 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36834 (-176.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36826 (-176.0 uncal um), Max = 36841 (-176.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:51:23.298 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36834, posNoise = 7, negNoise = 8
17-03-17 23:51:23.298 -07 000000547 INF: Z Motor: After move to -0.176942, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:23.298 -07 000000547 INF: Z Motor: Settle wait time = 1449 ms, measure time = 119 ms (allowed 150 ms), total time = 1568 ms
17-03-17 23:51:23.298 -07 000000547 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-17 23:51:23.338 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-17 23:51:23.338 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:51:23.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:23.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:23.338 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:23.338 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:23.338 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:51:23.338 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:23.338 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:51:23.338 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:51:23.348 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:51:23.348 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:51:23.358 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:51:23.358 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:51:23.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:51:23.408 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:51:23.698 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:51:23.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:51:23.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:51:23.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:51:23.748 -07 000000547 INF: FPGA: Recv @CAMSNAP 383
17-03-17 23:51:23.748 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 23:51:23.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 387 ms overall
17-03-17 23:51:23.758 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.96762,
17-03-17 23:51:23.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 23:51:23.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:23.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:51:23.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 23:51:23.848 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:23.848 -07 000000459 INF: Autofocus start
17-03-17 23:51:23.848 -07 000000459 INF: MeasureProfile start
17-03-17 23:51:23.848 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:23.858 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:51:23.858 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:51:23.858 -07 000000459 INF: MeasureProfile done
17-03-17 23:51:23.858 -07 000000459 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:51:23.858 -07 000000459 INF: Autofocus finished
17-03-17 23:51:23.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.80865,  FlowCellCompartmentTemperature: 21.90816, AmbientTemperature: 18.77891
17-03-17 23:51:24.058 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:51:24.058 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:51:24.058 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.176952782040758. ----------
17-03-17 23:51:24.058 -07 000000610 INF: Cycle	79	Tile	4	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:51:24.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37168, sync = True, waitForSettling = True)
17-03-17 23:51:24.068 -07 000000610 INF: Z Motor: Moving to -0.170144 mm, started at -0.176953 mm, distance = 6.81 um
17-03-17 23:51:24.068 -07 000000610 INF: FPGA: Xmit ZDACW 37168\n [Z Motor]
17-03-17 23:51:24.068 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:51:24.078 -07 000000610 INF: FPGA: 'ZDACW 37168' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:24.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:24.078 -07 000000502 INF: FPGA: Recv ZDACR 37168
17-03-17 23:51:24.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:24.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:51:24.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:24.238 -07 000000547 INF: FPGA: Recv ZSGSRD 35783
17-03-17 23:51:24.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:24.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:24.248 -07 000000551 INF: FPGA: Recv ZSGSRD 35772
17-03-17 23:51:24.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:24.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:24.258 -07 000000448 INF: FPGA: Recv ZSGSRD 35780
17-03-17 23:51:24.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:24.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:24.268 -07 000000551 INF: FPGA: Recv ZSGSRD 35774
17-03-17 23:51:24.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:24.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:24.278 -07 000000448 INF: FPGA: Recv ZSGSRD 35774
17-03-17 23:51:24.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:24.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:24.288 -07 000000551 INF: FPGA: Recv ZSGSRD 35780
17-03-17 23:51:24.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:24.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:24.298 -07 000000512 INF: FPGA: Recv ZSGSRD 35777
17-03-17 23:51:24.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:24.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:24.308 -07 000000448 INF: FPGA: Recv ZSGSRD 35778
17-03-17 23:51:24.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:24.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:24.318 -07 000000623 INF: FPGA: Recv ZSGSRD 35770
17-03-17 23:51:24.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:24.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:24.328 -07 000000501 INF: FPGA: Recv ZSGSRD 35775
17-03-17 23:51:24.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:24.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:24.338 -07 000000502 INF: FPGA: Recv ZPIEZORD 31510
17-03-17 23:51:24.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:24.348 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.671 V. Piezo Error = -9.4 V.
17-03-17 23:51:24.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35776 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35776 (-169.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35770 (-169.2 uncal um), Max = 35783 (-169.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:51:24.348 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35776, posNoise = 7, negNoise = 6
17-03-17 23:51:24.348 -07 000000610 INF: Z Motor: After move to -0.170144, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:24.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:51:24.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:24.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:24.348 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:24.348 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:51:24.348 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:24.348 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:51:24.348 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:51:24.348 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:51:24.348 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:24.348 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:51:24.348 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:51:24.348 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:51:24.358 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:51:24.358 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:51:24.358 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:51:24.358 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:51:24.368 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:51:24.368 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:51:24.368 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:51:24.368 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:51:24.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37345 150\n [Camera]
17-03-17 23:51:24.578 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:51:24.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.70855,  FlowCellCompartmentTemperature: 22.10867, AmbientTemperature: 18.7872
17-03-17 23:51:25.608 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:51:25.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:51:25.608 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:25.608 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:25.608 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:51:25.618 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:51:25.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:51:25.618 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:25.618 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:25.618 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:51:25.808 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37345 1422
17-03-17 23:51:25.958 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:51:25.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.60636,  FlowCellCompartmentTemperature: 21.94456, AmbientTemperature: 18.7872
17-03-17 23:51:25.998 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 23:51:25.998 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:51:25.998 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:26.008 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 23:51:26.008 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:51:26.008 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:26.008 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:26.008 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:26.008 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:51:26.018 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:51:26.458 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:51:26.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:51:26.458 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:26.458 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:26.458 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:51:26.458 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:51:26.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:51:26.458 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:26.458 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:26.458 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:51:26.648 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 2266
17-03-17 23:51:26.648 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:51:26.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37345 150' command took 2 ms to send, 2263 ms to get response, and 2273 ms overall
17-03-17 23:51:26.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:51:26.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.170155965594775. ------
17-03-17 23:51:26.648 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:26.648 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17679 mm
17-03-17 23:51:26.768 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:51:26.768 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:26.768 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-17 23:51:26.768 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:51:26.778 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:51:26.778 -07 000000547 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 23:51:26.778 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38620, sync = True, waitForSettling = False)
17-03-17 23:51:26.778 -07 000000502 INF: Z Motor: Moving to -0.176791 mm, started at -0.170156 mm, distance = -6.64 um
17-03-17 23:51:26.778 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:26.778 -07 000000623 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:51:26.788 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:26.788 -07 000000547 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:26.788 -07 000000547 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:51:26.788 -07 000000547 INF: Y Motor: Moving 1339 steps-16
17-03-17 23:51:26.788 -07 000000502 INF: FPGA: Xmit ZDACW 38620\n [Z Motor]
17-03-17 23:51:26.788 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:51:26.798 -07 000000502 INF: FPGA: 'ZDACW 38620' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:51:26.798 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:26.798 -07 000000623 INF: FPGA: Recv ZDACR 38620
17-03-17 23:51:26.808 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:51:26.808 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:26.808 -07 000000502 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 23:51:26.858 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:51:26.858 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:51:26.858 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:26.858 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:51:26.858 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:51:26.858 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:26.868 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:26.868 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:51:26.868 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:51:26.868 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:51:26.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.60636,  FlowCellCompartmentTemperature: 21.94456, AmbientTemperature: 18.78514
17-03-17 23:51:26.978 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:51:26.978 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 23:51:27.108 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:51:27.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:51:27.178 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 23:51:27.178 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:51:27.228 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:27.228 -07 000000502 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:51:27.238 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:27.238 -07 000000547 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:27.238 -07 000000547 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:51:27.238 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-17 23:51:27.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.51388,  FlowCellCompartmentTemperature: 22.0521, AmbientTemperature: 18.78514
17-03-17 23:51:28.188 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:28.188 -07 000000459 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:51:28.198 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:28.198 -07 000000547 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:28.218 -07 000000547 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:51:28.218 -07 000000547 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:51:28.218 -07 000000547 INF: Y Motor: Moved to 63.2241 after 1447 ms (table move)
17-03-17 23:51:28.228 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176791 mm (DAC = 38620)
17-03-17 23:51:28.228 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:28.228 -07 000000459 INF: FPGA: Recv ZSGSRD 36809
17-03-17 23:51:28.238 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:51:28.238 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:28.238 -07 000000623 INF: FPGA: Recv ZSGSRD 36807
17-03-17 23:51:28.248 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:28.248 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:28.248 -07 000000429 INF: FPGA: Recv ZSGSRD 36813
17-03-17 23:51:28.258 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:28.258 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:28.258 -07 000000512 INF: FPGA: Recv ZSGSRD 36817
17-03-17 23:51:28.268 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:28.268 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:28.268 -07 000000502 INF: FPGA: Recv ZSGSRD 36818
17-03-17 23:51:28.278 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:28.278 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:28.278 -07 000000429 INF: FPGA: Recv ZSGSRD 36816
17-03-17 23:51:28.288 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:28.288 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:28.288 -07 000000459 INF: FPGA: Recv ZSGSRD 36812
17-03-17 23:51:28.298 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:28.298 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:28.298 -07 000000502 INF: FPGA: Recv ZSGSRD 36801
17-03-17 23:51:28.308 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:28.308 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:28.308 -07 000000501 INF: FPGA: Recv ZSGSRD 36801
17-03-17 23:51:28.318 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:28.318 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:28.318 -07 000000547 INF: FPGA: Recv ZSGSRD 36810
17-03-17 23:51:28.328 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:28.328 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:28.328 -07 000000429 INF: FPGA: Recv ZPIEZORD 32935
17-03-17 23:51:28.338 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:28.338 -07 000000551 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.893 V. Piezo Error = -8.6 V.
17-03-17 23:51:28.338 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36810 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36811 (-175.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36801 (-175.8 uncal um), Max = 36818 (-176.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:51:28.338 -07 000000551 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36810, posNoise = 8, negNoise = 9
17-03-17 23:51:28.338 -07 000000551 INF: Z Motor: After move to -0.176791, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:28.338 -07 000000551 INF: Z Motor: Settle wait time = 1451 ms, measure time = 108 ms (allowed 150 ms), total time = 1559 ms
17-03-17 23:51:28.338 -07 000000551 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:51:28.388 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1731 ms
17-03-17 23:51:28.388 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:51:28.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:28.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:28.388 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:28.388 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:28.388 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:51:28.388 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:28.388 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:28.388 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:51:28.398 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:51:28.398 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:51:28.398 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:51:28.398 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:51:28.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:51:28.448 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:51:28.748 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:51:28.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:51:28.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:51:28.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:51:28.788 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:51:28.788 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 23:51:28.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-17 23:51:28.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 23:51:28.878 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:28.878 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:51:28.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:51:28.888 -07 000000459 INF: Autofocus start
17-03-17 23:51:28.888 -07 000000459 INF: MeasureProfile start
17-03-17 23:51:28.898 -07 000000459 INF: MeasureProfile done
17-03-17 23:51:28.898 -07 000000459 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:51:28.898 -07 000000459 INF: Autofocus finished
17-03-17 23:51:28.908 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:28.908 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:28.918 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:51:28.938 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:51:28.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.40853,  FlowCellCompartmentTemperature: 21.96055, AmbientTemperature: 18.78617
17-03-17 23:51:29.138 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:51:29.138 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 224 ms overall
17-03-17 23:51:29.138 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.176798600949356. ----------
17-03-17 23:51:29.138 -07 000000610 INF: Cycle	79	Tile	5	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:51:29.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37135, sync = True, waitForSettling = True)
17-03-17 23:51:29.148 -07 000000610 INF: Z Motor: Moving to -0.169993 mm, started at -0.176799 mm, distance = 6.81 um
17-03-17 23:51:29.148 -07 000000610 INF: FPGA: Xmit ZDACW 37135\n [Z Motor]
17-03-17 23:51:29.148 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:51:29.158 -07 000000610 INF: FPGA: 'ZDACW 37135' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:29.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:29.158 -07 000000551 INF: FPGA: Recv ZDACR 37135
17-03-17 23:51:29.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:29.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:51:29.198 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.958108,
17-03-17 23:51:29.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:29.318 -07 000000502 INF: FPGA: Recv ZSGSRD 35750
17-03-17 23:51:29.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:29.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:29.328 -07 000000502 INF: FPGA: Recv ZSGSRD 35750
17-03-17 23:51:29.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:29.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:29.338 -07 000000502 INF: FPGA: Recv ZSGSRD 35753
17-03-17 23:51:29.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:29.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:29.348 -07 000000551 INF: FPGA: Recv ZSGSRD 35751
17-03-17 23:51:29.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:29.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:29.358 -07 000000502 INF: FPGA: Recv ZSGSRD 35751
17-03-17 23:51:29.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:29.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:29.368 -07 000000551 INF: FPGA: Recv ZSGSRD 35755
17-03-17 23:51:29.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:29.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:29.378 -07 000000551 INF: FPGA: Recv ZSGSRD 35749
17-03-17 23:51:29.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:29.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:29.388 -07 000000459 INF: FPGA: Recv ZSGSRD 35760
17-03-17 23:51:29.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:29.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:29.398 -07 000000502 INF: FPGA: Recv ZSGSRD 35754
17-03-17 23:51:29.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:29.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:29.408 -07 000000459 INF: FPGA: Recv ZSGSRD 35745
17-03-17 23:51:29.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:29.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:29.418 -07 000000623 INF: FPGA: Recv ZPIEZORD 31506
17-03-17 23:51:29.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:29.428 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -9.4 V.
17-03-17 23:51:29.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35752 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35751 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35745 (-169.1 uncal um), Max = 35760 (-169.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:51:29.428 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35752, posNoise = 8, negNoise = 7
17-03-17 23:51:29.428 -07 000000610 INF: Z Motor: After move to -0.169993, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:29.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:51:29.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:29.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:29.428 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:29.428 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:29.428 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:51:29.428 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:29.428 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:51:29.428 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:51:29.428 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:29.428 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:51:29.428 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:51:29.428 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:51:29.438 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:51:29.438 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:51:29.438 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:51:29.438 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:51:29.448 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:51:29.448 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:51:29.448 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:51:29.448 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:51:29.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37312 150\n [Camera]
17-03-17 23:51:29.648 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:51:29.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.31882,  FlowCellCompartmentTemperature: 22.00126, AmbientTemperature: 18.78617
17-03-17 23:51:30.688 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:51:30.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:51:30.688 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:30.698 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:51:30.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:51:30.698 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:30.698 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:30.698 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:51:30.698 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:30.698 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:51:30.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37312 1422
17-03-17 23:51:30.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.31882,  FlowCellCompartmentTemperature: 22.00126, AmbientTemperature: 18.78514
17-03-17 23:51:31.028 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:51:31.088 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 23:51:31.088 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:51:31.088 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:31.088 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:31.098 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:51:31.098 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:51:31.098 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:51:31.098 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:31.098 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:31.108 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:51:31.538 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:51:31.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:51:31.538 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:31.538 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:31.538 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:51:31.538 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:51:31.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:51:31.538 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:31.538 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:31.538 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:51:31.728 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:51:31.728 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:51:31.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37312 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:51:31.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:51:31.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170001784503373. ------
17-03-17 23:51:31.728 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:31.728 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17652 mm
17-03-17 23:51:31.728 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:51:31.838 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:31.838 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 111 ms overall
17-03-17 23:51:31.838 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:51:31.848 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:51:31.848 -07 000000547 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 23:51:31.848 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:31.848 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38561, sync = True, waitForSettling = False)
17-03-17 23:51:31.848 -07 000000551 INF: Z Motor: Moving to -0.176521 mm, started at -0.170002 mm, distance = -6.52 um
17-03-17 23:51:31.848 -07 000000502 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:51:31.858 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:31.858 -07 000000547 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:31.858 -07 000000547 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:51:31.858 -07 000000547 INF: Y Motor: Moving 1342 steps-18
17-03-17 23:51:31.858 -07 000000551 INF: FPGA: Xmit ZDACW 38561\n [Z Motor]
17-03-17 23:51:31.858 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:51:31.868 -07 000000551 INF: FPGA: 'ZDACW 38561' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:51:31.868 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:31.868 -07 000000459 INF: FPGA: Recv ZDACR 38561
17-03-17 23:51:31.878 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:51:31.878 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:31.878 -07 000000551 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 23:51:31.938 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:51:31.938 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:51:31.938 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:31.938 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:51:31.938 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:51:31.938 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:31.938 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:51:31.938 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:51:31.938 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:51:31.948 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:51:31.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.21422,  FlowCellCompartmentTemperature: 22.02306, AmbientTemperature: 18.77581
17-03-17 23:51:32.048 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:51:32.048 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 203 ms to get response, and 204 ms overall
17-03-17 23:51:32.108 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:51:32.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:51:32.248 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:51:32.248 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:51:32.298 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:32.298 -07 000000459 INF: FPGA: Recv YRDPOS 131188
17-03-17 23:51:32.308 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:32.308 -07 000000547 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:32.308 -07 000000547 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 23:51:32.308 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.107 mm/sec
17-03-17 23:51:32.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.13125,  FlowCellCompartmentTemperature: 21.96346, AmbientTemperature: 18.77581
17-03-17 23:51:33.258 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:33.258 -07 000000551 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:51:33.268 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:33.268 -07 000000547 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:33.288 -07 000000547 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:51:33.288 -07 000000547 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:51:33.288 -07 000000547 INF: Y Motor: Moved to 64.0571 after 1443 ms (table move)
17-03-17 23:51:33.288 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176521 mm (DAC = 38561)
17-03-17 23:51:33.288 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:33.298 -07 000000429 INF: FPGA: Recv ZSGSRD 36775
17-03-17 23:51:33.298 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:51:33.298 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:33.298 -07 000000459 INF: FPGA: Recv ZSGSRD 36765
17-03-17 23:51:33.308 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:33.308 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:33.308 -07 000000429 INF: FPGA: Recv ZSGSRD 36766
17-03-17 23:51:33.318 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:33.318 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:33.318 -07 000000547 INF: FPGA: Recv ZSGSRD 36772
17-03-17 23:51:33.328 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:33.328 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:33.328 -07 000000551 INF: FPGA: Recv ZSGSRD 36776
17-03-17 23:51:33.338 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:33.338 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:33.338 -07 000000459 INF: FPGA: Recv ZSGSRD 36763
17-03-17 23:51:33.348 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:33.348 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:33.348 -07 000000429 INF: FPGA: Recv ZSGSRD 36768
17-03-17 23:51:33.358 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:33.358 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:33.358 -07 000000623 INF: FPGA: Recv ZSGSRD 36763
17-03-17 23:51:33.368 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:33.368 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:33.368 -07 000000502 INF: FPGA: Recv ZSGSRD 36766
17-03-17 23:51:33.378 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:33.378 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:33.378 -07 000000547 INF: FPGA: Recv ZSGSRD 36765
17-03-17 23:51:33.388 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:33.388 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:33.388 -07 000000502 INF: FPGA: Recv ZPIEZORD 32864
17-03-17 23:51:33.398 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:33.398 -07 000000512 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.884 V. Piezo Error = -8.6 V.
17-03-17 23:51:33.398 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36768 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36766 (-175.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36763 (-175.6 uncal um), Max = 36776 (-175.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:51:33.398 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36768, posNoise = 8, negNoise = 5
17-03-17 23:51:33.398 -07 000000512 INF: Z Motor: After move to -0.176521, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:33.398 -07 000000512 INF: Z Motor: Settle wait time = 1446 ms, measure time = 102 ms (allowed 150 ms), total time = 1548 ms
17-03-17 23:51:33.398 -07 000000512 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:51:33.448 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1713 ms
17-03-17 23:51:33.448 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:51:33.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:33.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:33.448 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:33.448 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:33.448 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:51:33.448 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:33.448 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:33.448 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:51:33.458 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:51:33.458 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:51:33.468 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:51:33.468 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:51:33.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:51:33.518 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:51:33.808 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:51:33.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:51:33.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:51:33.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:51:33.848 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:51:33.858 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 23:51:33.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-17 23:51:33.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:51:33.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:33.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:51:33.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:51:33.958 -07 000000551 INF: Autofocus start
17-03-17 23:51:33.958 -07 000000551 INF: MeasureProfile start
17-03-17 23:51:33.958 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:33.958 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:33.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.13125,  FlowCellCompartmentTemperature: 21.96346, AmbientTemperature: 18.77685
17-03-17 23:51:33.968 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:51:33.968 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:51:33.968 -07 000000551 INF: MeasureProfile done
17-03-17 23:51:33.968 -07 000000551 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 23:51:33.968 -07 000000551 INF: Autofocus finished
17-03-17 23:51:34.168 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:51:34.168 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:51:34.168 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.176528784039402. ----------
17-03-17 23:51:34.168 -07 000000610 INF: Cycle	79	Tile	6	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:51:34.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37003, sync = True, waitForSettling = True)
17-03-17 23:51:34.178 -07 000000610 INF: Z Motor: Moving to -0.169389 mm, started at -0.176529 mm, distance = 7.14 um
17-03-17 23:51:34.178 -07 000000610 INF: FPGA: Xmit ZDACW 37003\n [Z Motor]
17-03-17 23:51:34.178 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:51:34.188 -07 000000610 INF: FPGA: 'ZDACW 37003' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:34.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:34.188 -07 000000459 INF: FPGA: Recv ZDACR 37003
17-03-17 23:51:34.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:34.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:51:34.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:34.348 -07 000000475 INF: FPGA: Recv ZSGSRD 35661
17-03-17 23:51:34.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:34.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:34.368 -07 000000547 INF: FPGA: Recv ZSGSRD 35657
17-03-17 23:51:34.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:51:34.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:34.378 -07 000000547 INF: FPGA: Recv ZSGSRD 35655
17-03-17 23:51:34.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:34.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:34.408 -07 000000429 INF: FPGA: Recv ZSGSRD 35664
17-03-17 23:51:34.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:51:34.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:34.418 -07 000000459 INF: FPGA: Recv ZSGSRD 35653
17-03-17 23:51:34.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:34.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:34.428 -07 000000429 INF: FPGA: Recv ZSGSRD 35658
17-03-17 23:51:34.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:34.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:34.438 -07 000000459 INF: FPGA: Recv ZSGSRD 35647
17-03-17 23:51:34.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:34.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:34.448 -07 000000502 INF: FPGA: Recv ZSGSRD 35658
17-03-17 23:51:34.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:34.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:34.458 -07 000000475 INF: FPGA: Recv ZSGSRD 35664
17-03-17 23:51:34.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:34.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:34.468 -07 000000475 INF: FPGA: Recv ZSGSRD 35664
17-03-17 23:51:34.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:34.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:34.478 -07 000000429 INF: FPGA: Recv ZPIEZORD 31337
17-03-17 23:51:34.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:34.488 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.5 V.
17-03-17 23:51:34.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35658 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35658 (-168.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35647 (-168.5 uncal um), Max = 35664 (-168.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 23:51:34.488 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35658, posNoise = 6, negNoise = 11
17-03-17 23:51:34.488 -07 000000610 INF: Z Motor: After move to -0.169389, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:34.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 310 ms)
17-03-17 23:51:34.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:34.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:34.488 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:34.488 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:34.488 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:51:34.488 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:34.488 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:51:34.488 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:51:34.488 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:34.488 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:51:34.488 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:51:34.488 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:51:34.498 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:51:34.498 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:51:34.498 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:51:34.498 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:51:34.508 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 23:51:34.508 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:51:34.508 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 23:51:34.508 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:51:34.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37180 150\n [Camera]
17-03-17 23:51:34.648 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.98264,
17-03-17 23:51:34.708 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:51:34.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.03927,  FlowCellCompartmentTemperature: 22.06806, AmbientTemperature: 18.77581
17-03-17 23:51:35.748 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1233
17-03-17 23:51:35.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1233
17-03-17 23:51:35.758 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:35.758 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1233
17-03-17 23:51:35.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1233
17-03-17 23:51:35.758 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:35.758 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:35.758 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:51:35.758 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:35.758 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:51:35.938 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37180 1424
17-03-17 23:51:35.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 21.94127,  FlowCellCompartmentTemperature: 21.92562, AmbientTemperature: 18.77891
17-03-17 23:51:36.088 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:51:36.158 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:51:36.158 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:51:36.158 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:36.158 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:51:36.158 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:51:36.158 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:36.158 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:36.158 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:51:36.158 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:36.168 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 23:51:36.588 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:51:36.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:51:36.588 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:36.588 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:51:36.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:51:36.598 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:36.598 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:36.598 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:51:36.598 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:36.608 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:51:36.778 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:51:36.778 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:51:36.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37180 150' command took 2 ms to send, 2268 ms to get response, and 2272 ms overall
17-03-17 23:51:36.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:51:36.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.169397908562047. ------
17-03-17 23:51:36.788 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:36.788 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17550 mm
17-03-17 23:51:36.788 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:51:36.788 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:51:36.788 -07 000000475 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 23:51:36.788 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38339, sync = True, waitForSettling = False)
17-03-17 23:51:36.788 -07 000000502 INF: Z Motor: Moving to -0.175505 mm, started at -0.169398 mm, distance = -6.11 um
17-03-17 23:51:36.788 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:36.798 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:51:36.798 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:36.798 -07 000000501 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:51:36.808 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:51:36.808 -07 000000475 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:36.808 -07 000000475 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:51:36.808 -07 000000475 INF: Y Motor: Moving 1337 steps-12
17-03-17 23:51:36.808 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:51:36.818 -07 000000502 INF: FPGA: Xmit ZDACW 38339\n [Z Motor]
17-03-17 23:51:36.818 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:51:36.828 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:51:36.828 -07 000000502 INF: FPGA: 'ZDACW 38339' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 23:51:36.838 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:36.838 -07 000000623 INF: FPGA: Recv ZDACR 38339
17-03-17 23:51:36.848 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:51:36.848 -07 000000502 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:51:36.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 21.85408,  FlowCellCompartmentTemperature: 22.10434, AmbientTemperature: 18.77891
17-03-17 23:51:36.988 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:51:36.988 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 23:51:36.988 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:36.988 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:36.988 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:51:36.988 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:51:36.988 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:36.998 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:36.998 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:51:36.998 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:51:37.008 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:51:37.008 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 23:51:37.108 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:51:37.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:51:37.198 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 23:51:37.198 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:51:37.238 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:37.248 -07 000000501 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:51:37.248 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 23:51:37.248 -07 000000475 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:37.248 -07 000000475 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:51:37.248 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 23:51:37.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 21.85408,  FlowCellCompartmentTemperature: 22.10434, AmbientTemperature: 18.78304
17-03-17 23:51:38.198 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:38.198 -07 000000501 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:51:38.208 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:38.208 -07 000000475 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:38.228 -07 000000475 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:51:38.228 -07 000000475 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:51:38.228 -07 000000475 INF: Y Motor: Moved to 64.8789 after 1439 ms (table move)
17-03-17 23:51:38.238 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175505 mm (DAC = 38339)
17-03-17 23:51:38.238 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:38.238 -07 000000475 INF: FPGA: Recv ZSGSRD 36604
17-03-17 23:51:38.248 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:38.248 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:38.248 -07 000000623 INF: FPGA: Recv ZSGSRD 36609
17-03-17 23:51:38.258 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:38.258 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:38.258 -07 000000512 INF: FPGA: Recv ZSGSRD 36608
17-03-17 23:51:38.268 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:38.268 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:38.268 -07 000000623 INF: FPGA: Recv ZSGSRD 36611
17-03-17 23:51:38.278 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:38.278 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:38.278 -07 000000512 INF: FPGA: Recv ZSGSRD 36618
17-03-17 23:51:38.288 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:38.288 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:38.288 -07 000000475 INF: FPGA: Recv ZSGSRD 36617
17-03-17 23:51:38.298 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:38.298 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:38.298 -07 000000502 INF: FPGA: Recv ZSGSRD 36612
17-03-17 23:51:38.308 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:38.308 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:38.308 -07 000000623 INF: FPGA: Recv ZSGSRD 36609
17-03-17 23:51:38.318 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:38.318 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:38.318 -07 000000502 INF: FPGA: Recv ZSGSRD 36600
17-03-17 23:51:38.328 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:38.328 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:38.328 -07 000000415 INF: FPGA: Recv ZSGSRD 36608
17-03-17 23:51:38.338 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:38.338 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:38.338 -07 000000512 INF: FPGA: Recv ZPIEZORD 32625
17-03-17 23:51:38.348 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:38.348 -07 000000459 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.850 V. Piezo Error = -8.8 V.
17-03-17 23:51:38.348 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36610 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36609 (-174.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36600 (-174.6 uncal um), Max = 36618 (-174.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:51:38.348 -07 000000459 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36610, posNoise = 8, negNoise = 10
17-03-17 23:51:38.348 -07 000000459 INF: Z Motor: After move to -0.175505, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:38.348 -07 000000459 INF: Z Motor: Settle wait time = 1443 ms, measure time = 109 ms (allowed 150 ms), total time = 1552 ms
17-03-17 23:51:38.348 -07 000000459 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:51:38.398 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 23:51:38.398 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:51:38.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:38.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:38.398 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:38.398 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:38.398 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:51:38.398 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:38.398 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:51:38.398 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:51:38.408 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:51:38.408 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:51:38.408 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:51:38.408 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:51:38.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:51:38.458 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:51:38.758 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:51:38.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:51:38.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:51:38.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:51:38.798 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:51:38.798 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 23:51:38.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-17 23:51:38.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:51:38.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:38.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:51:38.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:51:38.898 -07 000000475 INF: Autofocus start
17-03-17 23:51:38.898 -07 000000475 INF: MeasureProfile start
17-03-17 23:51:38.898 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:38.898 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:38.908 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:51:38.908 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:51:38.908 -07 000000475 INF: MeasureProfile done
17-03-17 23:51:38.908 -07 000000475 INF: X=128  Z correction [um]=0.5828849
17-03-17 23:51:38.908 -07 000000475 INF: Autofocus finished
17-03-17 23:51:38.968 -07 000000541 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, TargetTemperature: 22, FlowCellHeatSinkTemperature: 21.77673,  FlowCellCompartmentTemperature: 21.88923, AmbientTemperature: 18.78097
17-03-17 23:51:39.108 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:51:39.108 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:51:39.108 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.175513758521004. ----------
17-03-17 23:51:39.108 -07 000000610 INF: Cycle	79	Tile	7	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:51:39.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36979, sync = True, waitForSettling = True)
17-03-17 23:51:39.118 -07 000000610 INF: Z Motor: Moving to -0.169279 mm, started at -0.175514 mm, distance = 6.23 um
17-03-17 23:51:39.118 -07 000000610 INF: FPGA: Xmit ZDACW 36979\n [Z Motor]
17-03-17 23:51:39.118 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:51:39.128 -07 000000610 INF: FPGA: 'ZDACW 36979' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:39.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:39.128 -07 000000547 INF: FPGA: Recv ZDACR 36979
17-03-17 23:51:39.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:39.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:51:39.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:39.288 -07 000000623 INF: FPGA: Recv ZSGSRD 35642
17-03-17 23:51:39.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:39.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:39.298 -07 000000547 INF: FPGA: Recv ZSGSRD 35637
17-03-17 23:51:39.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:39.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:39.308 -07 000000547 INF: FPGA: Recv ZSGSRD 35646
17-03-17 23:51:39.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:39.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:39.318 -07 000000547 INF: FPGA: Recv ZSGSRD 35643
17-03-17 23:51:39.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:39.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:39.328 -07 000000547 INF: FPGA: Recv ZSGSRD 35643
17-03-17 23:51:39.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:39.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:39.338 -07 000000459 INF: FPGA: Recv ZSGSRD 35639
17-03-17 23:51:39.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:39.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:39.348 -07 000000459 INF: FPGA: Recv ZSGSRD 35645
17-03-17 23:51:39.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:39.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:39.358 -07 000000459 INF: FPGA: Recv ZSGSRD 35648
17-03-17 23:51:39.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:39.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:39.368 -07 000000551 INF: FPGA: Recv ZSGSRD 35639
17-03-17 23:51:39.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:39.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:39.378 -07 000000459 INF: FPGA: Recv ZSGSRD 35634
17-03-17 23:51:39.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:39.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:39.388 -07 000000623 INF: FPGA: Recv ZPIEZORD 31342
17-03-17 23:51:39.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:39.398 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.643 V. Piezo Error = -9.5 V.
17-03-17 23:51:39.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35642 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35642 (-168.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35634 (-168.4 uncal um), Max = 35648 (-168.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:51:39.398 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35642, posNoise = 6, negNoise = 8
17-03-17 23:51:39.398 -07 000000610 INF: Z Motor: After move to -0.169279, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:39.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:51:39.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:39.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:39.398 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:39.398 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:39.398 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:51:39.398 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:39.398 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:51:39.398 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:51:39.398 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:39.398 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:51:39.398 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:51:39.398 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:51:39.408 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:51:39.408 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:51:39.408 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:51:39.408 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:51:39.418 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:51:39.418 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:51:39.418 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:51:39.418 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:51:39.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37156 150\n [Camera]
17-03-17 23:51:39.618 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:51:39.968 -07 000000541 INF: FlowCellTempControl: Setting temperature polling rate to 00:00:05 ms
17-03-17 23:51:40.118 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.015368,
17-03-17 23:51:40.658 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:51:40.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:51:40.658 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:40.658 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:40.658 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:51:40.658 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:51:40.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:51:40.668 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:40.668 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:40.668 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:51:40.858 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37156 1424
17-03-17 23:51:40.998 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:51:41.058 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:51:41.058 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:51:41.058 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:41.068 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:51:41.068 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:51:41.068 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:41.068 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:51:41.068 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:51:41.068 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:51:41.078 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:51:41.498 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:51:41.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:51:41.498 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:41.508 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:41.508 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:51:41.508 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:51:41.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:51:41.508 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:41.508 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:41.508 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:51:41.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-17 23:51:41.698 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:51:41.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37156 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:51:41.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:51:41.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.169295121167779. ------
17-03-17 23:51:41.818 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:41.818 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17585 mm
17-03-17 23:51:41.818 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:51:41.828 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:41.828 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:51:41.828 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:51:41.828 -07 000000623 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 23:51:41.828 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38415, sync = True, waitForSettling = False)
17-03-17 23:51:41.828 -07 000000541 INF: Z Motor: Moving to -0.175853 mm, started at -0.169295 mm, distance = -6.56 um
17-03-17 23:51:41.828 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:51:41.838 -07 000000541 INF: FPGA: Xmit ZDACW 38415\n [Z Motor]
17-03-17 23:51:41.838 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:51:41.848 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:41.848 -07 000000541 INF: FPGA: 'ZDACW 38415' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:51:41.848 -07 000000459 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:51:41.858 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:51:41.858 -07 000000623 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:41.858 -07 000000623 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:51:41.858 -07 000000623 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:51:41.858 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:41.858 -07 000000429 INF: FPGA: Recv ZDACR 38415
17-03-17 23:51:41.868 -07 000000541 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:51:41.868 -07 000000541 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 23:51:41.868 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:51:41.908 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:51:41.908 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:51:41.908 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:41.908 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:51:41.908 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:51:41.908 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:41.908 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:41.908 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:51:41.908 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:51:41.918 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:51:42.028 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:51:42.028 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 23:51:42.108 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:51:42.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:51:42.238 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 23:51:42.238 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:51:42.278 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:42.288 -07 000000501 INF: FPGA: Recv YRDPOS 134582
17-03-17 23:51:42.288 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:51:42.288 -07 000000623 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:42.288 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:51:42.288 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-17 23:51:43.238 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:43.248 -07 000000551 INF: FPGA: Recv YRDPOS 134582
17-03-17 23:51:43.258 -07 000000623 INF: FPGA: 'YRDPOS' command took 10 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:51:43.258 -07 000000623 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:43.278 -07 000000623 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:51:43.288 -07 000000623 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:51:43.288 -07 000000623 INF: Y Motor: Moved to 65.7139 after 1457 ms (table move)
17-03-17 23:51:43.288 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175853 mm (DAC = 38415)
17-03-17 23:51:43.288 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:43.288 -07 000000459 INF: FPGA: Recv ZSGSRD 36664
17-03-17 23:51:43.298 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:51:43.298 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:43.298 -07 000000623 INF: FPGA: Recv ZSGSRD 36668
17-03-17 23:51:43.308 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:43.308 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:43.308 -07 000000541 INF: FPGA: Recv ZSGSRD 36670
17-03-17 23:51:43.318 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:43.318 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:43.318 -07 000000502 INF: FPGA: Recv ZSGSRD 36664
17-03-17 23:51:43.328 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:43.328 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:43.328 -07 000000512 INF: FPGA: Recv ZSGSRD 36665
17-03-17 23:51:43.338 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:43.338 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:43.338 -07 000000459 INF: FPGA: Recv ZSGSRD 36657
17-03-17 23:51:43.348 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:43.348 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:43.348 -07 000000512 INF: FPGA: Recv ZSGSRD 36661
17-03-17 23:51:43.358 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:43.358 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:43.358 -07 000000512 INF: FPGA: Recv ZSGSRD 36659
17-03-17 23:51:43.368 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:43.368 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:43.368 -07 000000512 INF: FPGA: Recv ZSGSRD 36661
17-03-17 23:51:43.378 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:43.378 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:43.378 -07 000000459 INF: FPGA: Recv ZSGSRD 36666
17-03-17 23:51:43.388 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:43.388 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:43.388 -07 000000459 INF: FPGA: Recv ZPIEZORD 32711
17-03-17 23:51:43.398 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:43.398 -07 000000415 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.862 V. Piezo Error = -8.7 V.
17-03-17 23:51:43.398 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36664 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36664 (-175.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36657 (-174.9 uncal um), Max = 36670 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:51:43.398 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36664, posNoise = 6, negNoise = 7
17-03-17 23:51:43.398 -07 000000415 INF: Z Motor: After move to -0.175853, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:43.398 -07 000000415 INF: Z Motor: Settle wait time = 1462 ms, measure time = 105 ms (allowed 150 ms), total time = 1567 ms
17-03-17 23:51:43.398 -07 000000415 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 23:51:43.448 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-17 23:51:43.448 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:51:43.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:43.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:43.448 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:43.448 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:43.448 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:51:43.448 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:43.448 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:43.448 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:51:43.458 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:51:43.458 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:51:43.468 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:51:43.468 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:51:43.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:51:43.518 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:51:43.818 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:51:43.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:51:43.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:51:43.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:51:43.848 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:51:43.858 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 23:51:43.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-17 23:51:43.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:51:43.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:43.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:51:43.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:51:43.958 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:43.958 -07 000000475 INF: Autofocus start
17-03-17 23:51:43.958 -07 000000475 INF: MeasureProfile start
17-03-17 23:51:43.958 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:43.968 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:51:43.968 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:51:43.968 -07 000000475 INF: MeasureProfile done
17-03-17 23:51:43.968 -07 000000475 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:51:43.968 -07 000000475 INF: Autofocus finished
17-03-17 23:51:44.168 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:51:44.168 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:51:44.168 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.175860665976659. ----------
17-03-17 23:51:44.168 -07 000000610 INF: Cycle	79	Tile	8	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:51:44.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36895, sync = True, waitForSettling = True)
17-03-17 23:51:44.178 -07 000000610 INF: Z Motor: Moving to -0.168894 mm, started at -0.175861 mm, distance = 6.97 um
17-03-17 23:51:44.178 -07 000000610 INF: FPGA: Xmit ZDACW 36895\n [Z Motor]
17-03-17 23:51:44.178 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:51:44.188 -07 000000610 INF: FPGA: 'ZDACW 36895' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:44.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:44.188 -07 000000475 INF: FPGA: Recv ZDACR 36895
17-03-17 23:51:44.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:44.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:51:44.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:44.348 -07 000000448 INF: FPGA: Recv ZSGSRD 35576
17-03-17 23:51:44.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:44.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:44.358 -07 000000448 INF: FPGA: Recv ZSGSRD 35581
17-03-17 23:51:44.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:44.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:44.368 -07 000000448 INF: FPGA: Recv ZSGSRD 35585
17-03-17 23:51:44.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:44.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:44.378 -07 000000448 INF: FPGA: Recv ZSGSRD 35576
17-03-17 23:51:44.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:44.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:44.388 -07 000000448 INF: FPGA: Recv ZSGSRD 35582
17-03-17 23:51:44.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:44.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:44.398 -07 000000448 INF: FPGA: Recv ZSGSRD 35582
17-03-17 23:51:44.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:44.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:44.408 -07 000000448 INF: FPGA: Recv ZSGSRD 35584
17-03-17 23:51:44.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:44.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:44.418 -07 000000448 INF: FPGA: Recv ZSGSRD 35582
17-03-17 23:51:44.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:44.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:44.428 -07 000000448 INF: FPGA: Recv ZSGSRD 35576
17-03-17 23:51:44.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:44.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:44.438 -07 000000448 INF: FPGA: Recv ZSGSRD 35585
17-03-17 23:51:44.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:44.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:44.448 -07 000000459 INF: FPGA: Recv ZPIEZORD 31233
17-03-17 23:51:44.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:44.458 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.6 V.
17-03-17 23:51:44.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35581 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35582 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35576 (-168.0 uncal um), Max = 35585 (-168.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:51:44.458 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35581, posNoise = 4, negNoise = 5
17-03-17 23:51:44.458 -07 000000610 INF: Z Motor: After move to -0.168894, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:44.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:51:44.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:44.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:44.458 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:44.458 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:44.458 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:51:44.458 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:44.458 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:51:44.458 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:51:44.458 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:44.458 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:51:44.458 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:51:44.458 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:51:44.468 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:51:44.468 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:51:44.468 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:51:44.468 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:51:44.478 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:51:44.478 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:51:44.478 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:51:44.478 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:51:44.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37072 150\n [Camera]
17-03-17 23:51:44.688 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:51:45.478 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.031682,
17-03-17 23:51:45.718 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:51:45.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:51:45.718 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:45.728 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:51:45.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:51:45.728 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:45.728 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:45.728 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:51:45.728 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:45.728 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:51:45.918 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37072 1422
17-03-17 23:51:46.068 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:51:46.128 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:51:46.128 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:51:46.128 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:46.128 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:46.128 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:51:46.128 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:51:46.128 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:51:46.128 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:46.138 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:46.138 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:51:46.568 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:51:46.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:51:46.568 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:46.568 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:46.568 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:51:46.568 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:51:46.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:51:46.568 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:46.568 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:46.568 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:51:46.758 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:51:46.758 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:51:46.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37072 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:51:46.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:51:46.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.168903244227132. ------
17-03-17 23:51:46.758 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:46.758 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17538 mm
17-03-17 23:51:46.758 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:51:46.868 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:46.868 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 110 ms overall
17-03-17 23:51:46.868 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:51:46.878 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38313, sync = True, waitForSettling = False)
17-03-17 23:51:46.878 -07 000000382 INF: Z Motor: Moving to -0.175386 mm, started at -0.168903 mm, distance = -6.48 um
17-03-17 23:51:46.878 -07 000000382 INF: FPGA: Xmit ZDACW 38313\n [Z Motor]
17-03-17 23:51:46.878 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:51:46.878 -07 000000475 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 23:51:46.878 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:51:46.888 -07 000000382 INF: FPGA: 'ZDACW 38313' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:46.888 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:46.888 -07 000000512 INF: FPGA: Recv YRDPOS 134583
17-03-17 23:51:46.898 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:51:46.898 -07 000000475 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:46.898 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:46.898 -07 000000541 INF: FPGA: Recv ZDACR 38313
17-03-17 23:51:46.898 -07 000000475 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:51:46.898 -07 000000475 INF: Y Motor: Moving 1341 steps-18
17-03-17 23:51:46.908 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:51:46.908 -07 000000382 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 23:51:46.908 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:51:46.948 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:51:46.948 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:51:46.948 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:46.948 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:46.958 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 23:51:46.958 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:51:46.958 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:46.958 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:51:46.958 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:46.958 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:51:47.078 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:51:47.078 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 202 ms overall
17-03-17 23:51:47.108 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:51:47.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:51:47.278 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 23:51:47.278 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 23:51:47.328 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:47.328 -07 000000502 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:51:47.338 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:47.338 -07 000000475 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:47.338 -07 000000475 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:51:47.338 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.839 mm, average velocity = 2.190 mm/sec
17-03-17 23:51:48.288 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:48.288 -07 000000502 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:51:48.298 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:48.298 -07 000000475 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:48.318 -07 000000475 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:51:48.318 -07 000000475 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:51:48.318 -07 000000475 INF: Y Motor: Moved to 66.5391 after 1445 ms (table move)
17-03-17 23:51:48.328 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175386 mm (DAC = 38313)
17-03-17 23:51:48.328 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:48.328 -07 000000448 INF: FPGA: Recv ZSGSRD 36588
17-03-17 23:51:48.338 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:51:48.338 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:48.338 -07 000000478 INF: FPGA: Recv ZSGSRD 36593
17-03-17 23:51:48.348 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:48.348 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:48.348 -07 000000448 INF: FPGA: Recv ZSGSRD 36595
17-03-17 23:51:48.358 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:48.358 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:48.358 -07 000000502 INF: FPGA: Recv ZSGSRD 36599
17-03-17 23:51:48.368 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:48.368 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:48.368 -07 000000382 INF: FPGA: Recv ZSGSRD 36591
17-03-17 23:51:48.378 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:48.378 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:48.378 -07 000000429 INF: FPGA: Recv ZSGSRD 36586
17-03-17 23:51:48.388 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:48.388 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:48.388 -07 000000502 INF: FPGA: Recv ZSGSRD 36584
17-03-17 23:51:48.398 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:48.398 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:48.398 -07 000000623 INF: FPGA: Recv ZSGSRD 36587
17-03-17 23:51:48.408 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:48.408 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:48.408 -07 000000382 INF: FPGA: Recv ZSGSRD 36596
17-03-17 23:51:48.418 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:48.418 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:48.418 -07 000000547 INF: FPGA: Recv ZSGSRD 36585
17-03-17 23:51:48.428 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:48.428 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:48.428 -07 000000623 INF: FPGA: Recv ZPIEZORD 32609
17-03-17 23:51:48.438 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:48.438 -07 000000501 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.846 V. Piezo Error = -8.8 V.
17-03-17 23:51:48.438 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36590 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36590 (-174.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36584 (-174.5 uncal um), Max = 36599 (-174.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:51:48.438 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36590, posNoise = 9, negNoise = 6
17-03-17 23:51:48.438 -07 000000501 INF: Z Motor: After move to -0.175386, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:48.438 -07 000000501 INF: Z Motor: Settle wait time = 1450 ms, measure time = 109 ms (allowed 150 ms), total time = 1559 ms
17-03-17 23:51:48.438 -07 000000501 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:51:48.488 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1722 ms
17-03-17 23:51:48.488 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:51:48.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:48.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:48.498 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:48.498 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:48.498 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:51:48.498 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:48.498 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:48.498 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:51:48.498 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:51:48.498 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:51:48.518 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:51:48.518 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 23:51:48.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:51:48.558 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:51:48.858 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:51:48.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:51:48.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:51:48.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:51:48.898 -07 000000551 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:51:48.898 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 23:51:48.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-17 23:51:48.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:51:48.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:48.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:51:48.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:51:49.008 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:49.008 -07 000000475 INF: Autofocus start
17-03-17 23:51:49.008 -07 000000475 INF: MeasureProfile start
17-03-17 23:51:49.008 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:49.018 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:51:49.018 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:51:49.018 -07 000000475 INF: MeasureProfile done
17-03-17 23:51:49.018 -07 000000475 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:51:49.018 -07 000000475 INF: Autofocus finished
17-03-17 23:51:49.218 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:51:49.218 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:51:49.218 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.175385274278168. ----------
17-03-17 23:51:49.218 -07 000000610 INF: Cycle	79	Tile	9	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:51:49.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36828, sync = True, waitForSettling = True)
17-03-17 23:51:49.218 -07 000000610 INF: Z Motor: Moving to -0.168588 mm, started at -0.175385 mm, distance = 6.80 um
17-03-17 23:51:49.228 -07 000000610 INF: FPGA: Xmit ZDACW 36828\n [Z Motor]
17-03-17 23:51:49.228 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:51:49.238 -07 000000610 INF: FPGA: 'ZDACW 36828' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:49.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:49.238 -07 000000459 INF: FPGA: Recv ZDACR 36828
17-03-17 23:51:49.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:49.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:51:49.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:49.398 -07 000000501 INF: FPGA: Recv ZSGSRD 35538
17-03-17 23:51:49.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:49.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:49.408 -07 000000448 INF: FPGA: Recv ZSGSRD 35530
17-03-17 23:51:49.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:49.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:49.418 -07 000000512 INF: FPGA: Recv ZSGSRD 35533
17-03-17 23:51:49.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:49.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:49.428 -07 000000475 INF: FPGA: Recv ZSGSRD 35530
17-03-17 23:51:49.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:49.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:49.438 -07 000000547 INF: FPGA: Recv ZSGSRD 35533
17-03-17 23:51:49.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:49.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:49.448 -07 000000478 INF: FPGA: Recv ZSGSRD 35540
17-03-17 23:51:49.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:49.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:49.458 -07 000000512 INF: FPGA: Recv ZSGSRD 35535
17-03-17 23:51:49.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:49.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:49.468 -07 000000459 INF: FPGA: Recv ZSGSRD 35535
17-03-17 23:51:49.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:49.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:49.478 -07 000000415 INF: FPGA: Recv ZSGSRD 35534
17-03-17 23:51:49.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:49.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:49.488 -07 000000478 INF: FPGA: Recv ZSGSRD 35533
17-03-17 23:51:49.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:49.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:49.498 -07 000000501 INF: FPGA: Recv ZPIEZORD 31178
17-03-17 23:51:49.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:49.508 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.620 V. Piezo Error = -9.6 V.
17-03-17 23:51:49.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35534 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35534 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35530 (-167.7 uncal um), Max = 35540 (-167.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:51:49.508 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35534, posNoise = 6, negNoise = 4
17-03-17 23:51:49.508 -07 000000610 INF: Z Motor: After move to -0.168588, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:49.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:51:49.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:49.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:49.508 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:49.508 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:49.508 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:51:49.508 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:49.508 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:51:49.508 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:51:49.508 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:49.508 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:51:49.508 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:51:49.508 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:51:49.518 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:51:49.518 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:51:49.518 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:51:49.518 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:51:49.528 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:51:49.528 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:51:49.528 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:51:49.528 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:51:49.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37004 150\n [Camera]
17-03-17 23:51:49.728 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:51:50.768 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:51:50.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:51:50.768 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:50.768 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:51:50.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:51:50.768 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:50.778 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:50.778 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:51:50.778 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:50.778 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:51:50.838 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.014009,
17-03-17 23:51:50.958 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37004 1422
17-03-17 23:51:51.108 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:51:51.168 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:51:51.168 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:51:51.168 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:51.178 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:51:51.178 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:51:51.178 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:51.178 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:51.178 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:51:51.178 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:51.188 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:51:51.608 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:51:51.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:51:51.608 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:51.618 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:51:51.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:51:51.618 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:51.618 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:51.618 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:51:51.628 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:51.628 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:51:51.798 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:51:51.808 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:51:51.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37004 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall
17-03-17 23:51:51.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:51:51.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.168601306256469. ------
17-03-17 23:51:51.808 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:51.808 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17532 mm
17-03-17 23:51:51.808 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:51:51.808 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:51:51.808 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38299, sync = True, waitForSettling = False)
17-03-17 23:51:51.808 -07 000000502 INF: Z Motor: Moving to -0.175322 mm, started at -0.168601 mm, distance = -6.72 um
17-03-17 23:51:51.808 -07 000000475 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 23:51:51.808 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:51.818 -07 000000502 INF: FPGA: Xmit ZDACW 38299\n [Z Motor]
17-03-17 23:51:51.818 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:51:51.818 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:51:51.828 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:51.828 -07 000000502 INF: FPGA: 'ZDACW 38299' command took 2 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:51:51.828 -07 000000415 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:51:51.838 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:51:51.838 -07 000000475 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:51.838 -07 000000475 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:51:51.838 -07 000000475 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:51:51.838 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:51:51.848 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:51.848 -07 000000382 INF: FPGA: Recv ZDACR 38299
17-03-17 23:51:51.858 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:51:51.858 -07 000000502 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 23:51:51.858 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:51:52.018 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:51:52.028 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:51:52.028 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:52.028 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:51:52.028 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:51:52.028 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:52.028 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:51:52.028 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 23:51:52.028 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:51:52.038 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 23:51:52.038 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:51:52.038 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 220 ms overall
17-03-17 23:51:52.108 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:51:52.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:51:52.228 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 23:51:52.228 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:51:52.268 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:52.278 -07 000000415 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:51:52.278 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:51:52.278 -07 000000475 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:52.278 -07 000000475 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 23:51:52.278 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 23:51:53.228 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:53.228 -07 000000382 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:51:53.238 -07 000000475 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:53.238 -07 000000475 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:53.258 -07 000000475 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:51:53.258 -07 000000475 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:51:53.258 -07 000000475 INF: Y Motor: Moved to 67.3721 after 1448 ms (table move)
17-03-17 23:51:53.268 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175322 mm (DAC = 38299)
17-03-17 23:51:53.268 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:53.268 -07 000000475 INF: FPGA: Recv ZSGSRD 36575
17-03-17 23:51:53.278 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:53.278 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:53.278 -07 000000382 INF: FPGA: Recv ZSGSRD 36579
17-03-17 23:51:53.288 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:53.288 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:53.288 -07 000000382 INF: FPGA: Recv ZSGSRD 36589
17-03-17 23:51:53.298 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:53.298 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:53.298 -07 000000502 INF: FPGA: Recv ZSGSRD 36582
17-03-17 23:51:53.308 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:53.308 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:53.308 -07 000000502 INF: FPGA: Recv ZSGSRD 36584
17-03-17 23:51:53.318 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:53.318 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:53.318 -07 000000382 INF: FPGA: Recv ZSGSRD 36586
17-03-17 23:51:53.328 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:53.328 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:53.328 -07 000000502 INF: FPGA: Recv ZSGSRD 36579
17-03-17 23:51:53.338 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:53.338 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:53.338 -07 000000382 INF: FPGA: Recv ZSGSRD 36585
17-03-17 23:51:53.348 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:53.348 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:53.348 -07 000000502 INF: FPGA: Recv ZSGSRD 36577
17-03-17 23:51:53.358 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:53.358 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:53.358 -07 000000382 INF: FPGA: Recv ZSGSRD 36582
17-03-17 23:51:53.368 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:53.368 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:53.368 -07 000000382 INF: FPGA: Recv ZPIEZORD 32649
17-03-17 23:51:53.378 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:53.378 -07 000000429 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.844 V. Piezo Error = -8.7 V.
17-03-17 23:51:53.378 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36582 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36582 (-174.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36575 (-174.4 uncal um), Max = 36589 (-174.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:51:53.378 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36582, posNoise = 7, negNoise = 7
17-03-17 23:51:53.378 -07 000000429 INF: Z Motor: After move to -0.175322, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:53.378 -07 000000429 INF: Z Motor: Settle wait time = 1453 ms, measure time = 109 ms (allowed 150 ms), total time = 1562 ms
17-03-17 23:51:53.378 -07 000000429 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:51:53.428 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-17 23:51:53.428 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:51:53.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:53.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:53.428 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:53.428 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:53.428 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:51:53.438 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:53.438 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:51:53.438 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:51:53.438 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:51:53.438 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:51:53.448 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:51:53.448 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:51:53.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:51:53.488 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:51:53.788 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:51:53.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:51:53.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:51:53.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:51:53.828 -07 000000478 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:51:53.828 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 23:51:53.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-17 23:51:53.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:51:53.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:53.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:51:53.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:51:54.028 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:54.028 -07 000000382 INF: Autofocus start
17-03-17 23:51:54.028 -07 000000382 INF: MeasureProfile start
17-03-17 23:51:54.028 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:54.038 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:51:54.038 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:51:54.038 -07 000000382 INF: MeasureProfile done
17-03-17 23:51:54.038 -07 000000382 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:51:54.038 -07 000000382 INF: Autofocus finished
17-03-17 23:51:54.238 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:51:54.238 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:51:54.238 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.175333880581034. ----------
17-03-17 23:51:54.238 -07 000000610 INF: Cycle	79	Tile	10	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:51:54.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36814, sync = True, waitForSettling = True)
17-03-17 23:51:54.248 -07 000000610 INF: Z Motor: Moving to -0.168524 mm, started at -0.175334 mm, distance = 6.81 um
17-03-17 23:51:54.248 -07 000000610 INF: FPGA: Xmit ZDACW 36814\n [Z Motor]
17-03-17 23:51:54.248 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:51:54.258 -07 000000610 INF: FPGA: 'ZDACW 36814' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:54.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:54.258 -07 000000478 INF: FPGA: Recv ZDACR 36814
17-03-17 23:51:54.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:54.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:51:54.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:54.418 -07 000000478 INF: FPGA: Recv ZSGSRD 35531
17-03-17 23:51:54.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:54.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:54.428 -07 000000478 INF: FPGA: Recv ZSGSRD 35526
17-03-17 23:51:54.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:54.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:54.438 -07 000000547 INF: FPGA: Recv ZSGSRD 35526
17-03-17 23:51:54.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:54.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:54.448 -07 000000475 INF: FPGA: Recv ZSGSRD 35520
17-03-17 23:51:54.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:54.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:54.458 -07 000000448 INF: FPGA: Recv ZSGSRD 35525
17-03-17 23:51:54.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:54.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:54.468 -07 000000541 INF: FPGA: Recv ZSGSRD 35524
17-03-17 23:51:54.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:54.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:54.478 -07 000000501 INF: FPGA: Recv ZSGSRD 35523
17-03-17 23:51:54.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:54.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:54.488 -07 000000501 INF: FPGA: Recv ZSGSRD 35525
17-03-17 23:51:54.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:54.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:54.498 -07 000000501 INF: FPGA: Recv ZSGSRD 35523
17-03-17 23:51:54.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:54.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:54.508 -07 000000501 INF: FPGA: Recv ZSGSRD 35524
17-03-17 23:51:54.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:54.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:54.518 -07 000000501 INF: FPGA: Recv ZPIEZORD 31213
17-03-17 23:51:54.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:54.528 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -9.5 V.
17-03-17 23:51:54.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35525 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35524 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35520 (-167.6 uncal um), Max = 35531 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:51:54.528 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35525, posNoise = 6, negNoise = 5
17-03-17 23:51:54.528 -07 000000610 INF: Z Motor: After move to -0.168524, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:54.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:51:54.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:54.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:54.528 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:54.528 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:54.528 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:51:54.528 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:54.528 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:51:54.528 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:51:54.528 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:51:54.528 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:51:54.528 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:51:54.528 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:51:54.538 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:51:54.538 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:51:54.538 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:51:54.538 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:51:54.548 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:51:54.548 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:51:54.548 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:51:54.548 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:51:54.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36991 150\n [Camera]
17-03-17 23:51:54.758 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 23:51:55.788 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:51:55.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:51:55.788 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:55.788 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:55.788 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:51:55.798 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:51:55.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:51:55.798 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:55.798 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:55.798 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:51:55.988 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36991 1422
17-03-17 23:51:56.138 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:51:56.188 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:51:56.188 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:51:56.188 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:56.198 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.031682,
17-03-17 23:51:56.198 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:56.198 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:51:56.198 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:51:56.198 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:51:56.198 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:56.198 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:56.208 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:51:56.638 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:51:56.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:51:56.638 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:51:56.638 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:51:56.638 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:51:56.638 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:51:56.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:51:56.638 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:51:56.638 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:51:56.638 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:51:56.828 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-17 23:51:56.828 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:51:56.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36991 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:51:56.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:51:56.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.168543488347193. ------
17-03-17 23:51:56.958 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17487 mm
17-03-17 23:51:56.958 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:51:56.958 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:51:56.958 -07 000000541 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 23:51:56.958 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38200, sync = True, waitForSettling = False)
17-03-17 23:51:56.958 -07 000000448 INF: Z Motor: Moving to -0.174868 mm, started at -0.168543 mm, distance = -6.32 um
17-03-17 23:51:56.968 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:56.968 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:56.978 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:51:56.978 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:56.978 -07 000000382 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:51:56.988 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:51:56.988 -07 000000541 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:56.988 -07 000000541 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:51:56.988 -07 000000541 INF: Y Motor: Moving 1345 steps-22
17-03-17 23:51:56.988 -07 000000448 INF: FPGA: Xmit ZDACW 38200\n [Z Motor]
17-03-17 23:51:56.988 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:51:56.998 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:51:56.998 -07 000000448 INF: FPGA: 'ZDACW 38200' command took 1 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 23:51:57.008 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:51:57.018 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:57.018 -07 000000501 INF: FPGA: Recv ZDACR 38200
17-03-17 23:51:57.028 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:51:57.028 -07 000000448 INF: Z Motor: MoveAbsStepped took 61 ms (did NOT wait for settling yet))
17-03-17 23:51:57.038 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 23:51:57.038 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:51:57.038 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:57.048 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 23:51:57.048 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 23:51:57.048 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:57.048 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:51:57.048 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:51:57.048 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 23:51:57.058 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:51:57.108 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:51:57.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:51:57.198 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:51:57.198 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:51:57.378 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 23:51:57.378 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:51:57.418 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:57.428 -07 000000475 INF: FPGA: Recv YRDPOS 139684
17-03-17 23:51:57.428 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:51:57.428 -07 000000541 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:57.428 -07 000000541 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 23:51:57.428 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.117 mm/sec
17-03-17 23:51:58.378 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:51:58.378 -07 000000475 INF: FPGA: Recv YRDPOS 139685
17-03-17 23:51:58.388 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:58.388 -07 000000541 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:51:58.408 -07 000000541 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:51:58.408 -07 000000541 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:51:58.408 -07 000000541 INF: Y Motor: Moved to 68.2056 after 1446 ms (table move)
17-03-17 23:51:58.408 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174868 mm (DAC = 38200)
17-03-17 23:51:58.408 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:58.418 -07 000000502 INF: FPGA: Recv ZSGSRD 36517
17-03-17 23:51:58.418 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:51:58.418 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:58.418 -07 000000551 INF: FPGA: Recv ZSGSRD 36514
17-03-17 23:51:58.428 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:58.428 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:58.428 -07 000000502 INF: FPGA: Recv ZSGSRD 36513
17-03-17 23:51:58.438 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:58.438 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:58.438 -07 000000551 INF: FPGA: Recv ZSGSRD 36511
17-03-17 23:51:58.448 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:58.448 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:58.448 -07 000000502 INF: FPGA: Recv ZSGSRD 36516
17-03-17 23:51:58.458 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:58.458 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:58.458 -07 000000551 INF: FPGA: Recv ZSGSRD 36521
17-03-17 23:51:58.468 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:58.468 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:58.468 -07 000000448 INF: FPGA: Recv ZSGSRD 36514
17-03-17 23:51:58.478 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:58.478 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:58.478 -07 000000478 INF: FPGA: Recv ZSGSRD 36509
17-03-17 23:51:58.488 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:58.488 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:58.488 -07 000000501 INF: FPGA: Recv ZSGSRD 36506
17-03-17 23:51:58.498 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:58.498 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:58.498 -07 000000382 INF: FPGA: Recv ZSGSRD 36504
17-03-17 23:51:58.508 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:58.508 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:58.508 -07 000000512 INF: FPGA: Recv ZPIEZORD 32552
17-03-17 23:51:58.518 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:58.518 -07 000000415 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.7 V.
17-03-17 23:51:58.518 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36512 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36514 (-174.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36504 (-173.9 uncal um), Max = 36521 (-174.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:51:58.518 -07 000000415 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36512, posNoise = 9, negNoise = 8
17-03-17 23:51:58.518 -07 000000415 INF: Z Motor: After move to -0.174868, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:58.518 -07 000000415 INF: Z Motor: Settle wait time = 1449 ms, measure time = 102 ms (allowed 150 ms), total time = 1551 ms
17-03-17 23:51:58.518 -07 000000415 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:51:58.568 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 23:51:58.568 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:51:58.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:58.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:58.568 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:58.568 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:58.568 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:51:58.568 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:58.568 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:58.568 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:51:58.578 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:51:58.578 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:51:58.588 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:51:58.588 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:51:58.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:51:58.628 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:51:58.928 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:51:58.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:51:58.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:51:58.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:51:58.968 -07 000000448 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:51:58.968 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 23:51:58.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-17 23:51:59.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:51:59.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:51:59.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:51:59.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:51:59.168 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:51:59.168 -07 000000459 INF: Autofocus start
17-03-17 23:51:59.168 -07 000000459 INF: MeasureProfile start
17-03-17 23:51:59.168 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:51:59.178 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:51:59.178 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:51:59.178 -07 000000459 INF: MeasureProfile done
17-03-17 23:51:59.178 -07 000000459 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:51:59.178 -07 000000459 INF: Autofocus finished
17-03-17 23:51:59.378 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:51:59.378 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:51:59.378 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.174884185731111. ----------
17-03-17 23:51:59.378 -07 000000610 INF: Cycle	79	Tile	11	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:51:59.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36715, sync = True, waitForSettling = True)
17-03-17 23:51:59.388 -07 000000610 INF: Z Motor: Moving to -0.168070 mm, started at -0.174884 mm, distance = 6.81 um
17-03-17 23:51:59.388 -07 000000610 INF: FPGA: Xmit ZDACW 36715\n [Z Motor]
17-03-17 23:51:59.388 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:51:59.398 -07 000000610 INF: FPGA: 'ZDACW 36715' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:59.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:51:59.398 -07 000000448 INF: FPGA: Recv ZDACR 36715
17-03-17 23:51:59.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:59.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:51:59.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:59.558 -07 000000448 INF: FPGA: Recv ZSGSRD 35451
17-03-17 23:51:59.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:51:59.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:59.568 -07 000000448 INF: FPGA: Recv ZSGSRD 35457
17-03-17 23:51:59.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:59.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:59.578 -07 000000547 INF: FPGA: Recv ZSGSRD 35451
17-03-17 23:51:59.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:59.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:59.588 -07 000000547 INF: FPGA: Recv ZSGSRD 35448
17-03-17 23:51:59.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:59.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:59.598 -07 000000415 INF: FPGA: Recv ZSGSRD 35461
17-03-17 23:51:59.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:59.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:59.608 -07 000000415 INF: FPGA: Recv ZSGSRD 35455
17-03-17 23:51:59.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:59.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:59.618 -07 000000415 INF: FPGA: Recv ZSGSRD 35454
17-03-17 23:51:59.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:59.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:59.628 -07 000000415 INF: FPGA: Recv ZSGSRD 35453
17-03-17 23:51:59.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:59.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:59.638 -07 000000415 INF: FPGA: Recv ZSGSRD 35456
17-03-17 23:51:59.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:59.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:51:59.648 -07 000000551 INF: FPGA: Recv ZSGSRD 35460
17-03-17 23:51:59.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:51:59.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:51:59.658 -07 000000551 INF: FPGA: Recv ZPIEZORD 31096
17-03-17 23:51:59.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:51:59.668 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.602 V. Piezo Error = -9.6 V.
17-03-17 23:51:59.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35455 (-167.2 uncal um), Error = 0.8 uncal um, Median = 35454 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35448 (-167.2 uncal um), Max = 35461 (-167.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:51:59.668 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35455, posNoise = 6, negNoise = 7
17-03-17 23:51:59.668 -07 000000610 INF: Z Motor: After move to -0.168070, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:51:59.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:51:59.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:51:59.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:51:59.668 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:51:59.668 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:51:59.668 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:51:59.668 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:51:59.668 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:51:59.668 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:51:59.668 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:51:59.668 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:51:59.668 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:51:59.668 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:51:59.668 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:51:59.668 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:51:59.678 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:51:59.678 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:51:59.688 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:51:59.688 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:51:59.688 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:51:59.688 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:51:59.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36891 150\n [Camera]
17-03-17 23:51:59.888 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:52:00.928 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:52:00.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:52:00.928 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:00.938 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:52:00.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:52:00.938 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:00.938 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:00.938 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:52:00.938 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:00.938 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:52:01.118 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36891 1422
17-03-17 23:52:01.268 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:52:01.328 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:52:01.328 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:52:01.328 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:01.338 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:52:01.338 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:52:01.338 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:01.338 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:01.338 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:52:01.338 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:01.348 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 23:52:01.558 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.008536,
17-03-17 23:52:01.768 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:52:01.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:52:01.778 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:01.778 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:01.778 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:52:01.778 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:52:01.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:52:01.778 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:01.778 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:01.778 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:52:01.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:52:01.968 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:52:01.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36891 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:52:01.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:52:01.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.16809379349727. ------
17-03-17 23:52:01.968 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:01.968 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17467 mm
17-03-17 23:52:01.968 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:52:01.968 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:52:01.968 -07 000000541 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 23:52:01.978 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:01.978 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:01.978 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:52:01.978 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38157, sync = True, waitForSettling = False)
17-03-17 23:52:01.978 -07 000000501 INF: Z Motor: Moving to -0.174672 mm, started at -0.168094 mm, distance = -6.58 um
17-03-17 23:52:01.978 -07 000000382 INF: FPGA: Recv YRDPOS 139685
17-03-17 23:52:01.988 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:01.988 -07 000000541 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:01.988 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:52:01.988 -07 000000541 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:52:01.988 -07 000000541 INF: Y Motor: Moving 1339 steps-15
17-03-17 23:52:01.998 -07 000000501 INF: FPGA: Xmit ZDACW 38157\n [Z Motor]
17-03-17 23:52:01.998 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 23:52:02.008 -07 000000501 INF: FPGA: 'ZDACW 38157' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:52:02.008 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:52:02.018 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:02.018 -07 000000382 INF: FPGA: Recv ZDACR 38157
17-03-17 23:52:02.028 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:52:02.028 -07 000000501 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:52:02.138 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:52:02.138 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:52:02.178 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:52:02.178 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:52:02.178 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:02.178 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:52:02.178 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:52:02.178 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:02.178 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:52:02.178 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:52:02.178 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:52:02.188 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:52:02.188 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:52:02.188 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:52:02.378 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 23:52:02.378 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 23:52:02.428 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:02.428 -07 000000501 INF: FPGA: Recv YRDPOS 141367
17-03-17 23:52:02.438 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:02.438 -07 000000541 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:02.438 -07 000000541 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 23:52:02.438 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-17 23:52:03.388 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:03.388 -07 000000501 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:52:03.398 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:03.398 -07 000000541 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:03.428 -07 000000541 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:52:03.428 -07 000000541 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:52:03.428 -07 000000541 INF: Y Motor: Moved to 69.0273 after 1456 ms (table move)
17-03-17 23:52:03.438 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174672 mm (DAC = 38157)
17-03-17 23:52:03.438 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:03.438 -07 000000448 INF: FPGA: Recv ZSGSRD 36477
17-03-17 23:52:03.448 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:52:03.448 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:03.448 -07 000000501 INF: FPGA: Recv ZSGSRD 36474
17-03-17 23:52:03.458 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:03.458 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:03.458 -07 000000502 INF: FPGA: Recv ZSGSRD 36478
17-03-17 23:52:03.468 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:03.468 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:03.468 -07 000000459 INF: FPGA: Recv ZSGSRD 36481
17-03-17 23:52:03.478 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:03.478 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:03.478 -07 000000429 INF: FPGA: Recv ZSGSRD 36479
17-03-17 23:52:03.488 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:03.488 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:03.488 -07 000000623 INF: FPGA: Recv ZSGSRD 36481
17-03-17 23:52:03.498 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:03.498 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:03.498 -07 000000502 INF: FPGA: Recv ZSGSRD 36480
17-03-17 23:52:03.508 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:03.508 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:03.508 -07 000000459 INF: FPGA: Recv ZSGSRD 36481
17-03-17 23:52:03.518 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:03.518 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:03.518 -07 000000448 INF: FPGA: Recv ZSGSRD 36483
17-03-17 23:52:03.528 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:03.528 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:03.528 -07 000000623 INF: FPGA: Recv ZSGSRD 36482
17-03-17 23:52:03.538 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:03.538 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:03.538 -07 000000475 INF: FPGA: Recv ZPIEZORD 32522
17-03-17 23:52:03.548 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:03.548 -07 000000415 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.822 V. Piezo Error = -8.7 V.
17-03-17 23:52:03.548 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36480 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36480 (-173.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36474 (-173.8 uncal um), Max = 36483 (-173.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:52:03.548 -07 000000415 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36480, posNoise = 3, negNoise = 6
17-03-17 23:52:03.548 -07 000000415 INF: Z Motor: After move to -0.174672, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:03.548 -07 000000415 INF: Z Motor: Settle wait time = 1460 ms, measure time = 110 ms (allowed 150 ms), total time = 1570 ms
17-03-17 23:52:03.548 -07 000000415 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:52:03.588 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-17 23:52:03.588 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:52:03.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:03.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:03.598 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:52:03.598 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:03.598 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:03.598 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:03.598 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:52:03.598 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:52:03.598 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:52:03.598 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:52:03.608 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:52:03.608 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:52:03.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:52:03.648 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:52:03.948 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:52:03.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:52:03.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:52:03.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:52:03.988 -07 000000547 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:52:03.988 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 23:52:03.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-17 23:52:04.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:52:04.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:04.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:52:04.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:52:04.188 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:04.188 -07 000000547 INF: Autofocus start
17-03-17 23:52:04.188 -07 000000547 INF: MeasureProfile start
17-03-17 23:52:04.188 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:04.198 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:52:04.198 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:52:04.198 -07 000000547 INF: MeasureProfile done
17-03-17 23:52:04.198 -07 000000547 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:52:04.198 -07 000000547 INF: Autofocus finished
17-03-17 23:52:04.398 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:52:04.398 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:52:04.398 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.174678610942575. ----------
17-03-17 23:52:04.398 -07 000000610 INF: Cycle	79	Tile	12	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:52:04.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36654, sync = True, waitForSettling = True)
17-03-17 23:52:04.408 -07 000000610 INF: Z Motor: Moving to -0.167791 mm, started at -0.174679 mm, distance = 6.89 um
17-03-17 23:52:04.408 -07 000000610 INF: FPGA: Xmit ZDACW 36654\n [Z Motor]
17-03-17 23:52:04.408 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:52:04.418 -07 000000610 INF: FPGA: 'ZDACW 36654' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:52:04.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:04.418 -07 000000478 INF: FPGA: Recv ZDACR 36654
17-03-17 23:52:04.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:04.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:52:04.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:04.578 -07 000000512 INF: FPGA: Recv ZSGSRD 35414
17-03-17 23:52:04.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:04.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:04.588 -07 000000547 INF: FPGA: Recv ZSGSRD 35411
17-03-17 23:52:04.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:04.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:04.598 -07 000000623 INF: FPGA: Recv ZSGSRD 35408
17-03-17 23:52:04.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:04.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:04.608 -07 000000382 INF: FPGA: Recv ZSGSRD 35413
17-03-17 23:52:04.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:04.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:04.618 -07 000000475 INF: FPGA: Recv ZSGSRD 35411
17-03-17 23:52:04.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:04.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:04.628 -07 000000547 INF: FPGA: Recv ZSGSRD 35408
17-03-17 23:52:04.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:04.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:04.638 -07 000000429 INF: FPGA: Recv ZSGSRD 35409
17-03-17 23:52:04.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:04.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:04.648 -07 000000382 INF: FPGA: Recv ZSGSRD 35411
17-03-17 23:52:04.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:04.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:04.658 -07 000000475 INF: FPGA: Recv ZSGSRD 35411
17-03-17 23:52:04.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:04.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:04.668 -07 000000512 INF: FPGA: Recv ZSGSRD 35408
17-03-17 23:52:04.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:04.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:04.678 -07 000000478 INF: FPGA: Recv ZPIEZORD 31071
17-03-17 23:52:04.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:04.688 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.593 V. Piezo Error = -9.6 V.
17-03-17 23:52:04.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35410 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35411 (-166.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35408 (-166.9 uncal um), Max = 35414 (-167.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 23:52:04.688 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35410, posNoise = 4, negNoise = 2
17-03-17 23:52:04.688 -07 000000610 INF: Z Motor: After move to -0.167791, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:04.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:52:04.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:04.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:04.688 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:04.688 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:04.688 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:52:04.688 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:04.688 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:52:04.688 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:52:04.688 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:52:04.688 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:52:04.688 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:52:04.688 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:52:04.698 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:52:04.698 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:52:04.698 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:52:04.698 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:52:04.708 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:52:04.708 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:52:04.708 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:52:04.708 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:52:04.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36831 150\n [Camera]
17-03-17 23:52:04.918 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:52:05.948 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:52:05.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:52:05.948 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:05.958 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:05.958 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:52:05.958 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:52:05.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:52:05.958 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:05.958 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:05.958 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:52:06.148 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36831 1422
17-03-17 23:52:06.298 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:52:06.348 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:52:06.348 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:52:06.348 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:06.358 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:52:06.358 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:52:06.358 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:52:06.358 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:52:06.358 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:06.358 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:06.368 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:52:06.798 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:52:06.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:52:06.798 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:06.798 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:52:06.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:52:06.798 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:06.808 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:06.808 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:52:06.808 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:06.808 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:52:06.918 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.98264,
17-03-17 23:52:06.988 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:52:06.988 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:52:06.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36831 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:52:06.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:52:06.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.16780470395089. ------
17-03-17 23:52:06.988 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:06.988 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17420 mm
17-03-17 23:52:06.988 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:52:06.998 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:06.998 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:52:06.998 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:52:06.998 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:52:06.998 -07 000000478 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 23:52:06.998 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38054, sync = True, waitForSettling = False)
17-03-17 23:52:06.998 -07 000000623 INF: Z Motor: Moving to -0.174200 mm, started at -0.167805 mm, distance = -6.40 um
17-03-17 23:52:07.008 -07 000000623 INF: FPGA: Xmit ZDACW 38054\n [Z Motor]
17-03-17 23:52:07.008 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:52:07.018 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:07.018 -07 000000623 INF: FPGA: 'ZDACW 38054' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:52:07.018 -07 000000502 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:52:07.028 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:52:07.028 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:07.028 -07 000000478 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:07.028 -07 000000478 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:52:07.028 -07 000000478 INF: Y Motor: Moving 1352 steps-32
17-03-17 23:52:07.028 -07 000000448 INF: FPGA: Recv ZDACR 38054
17-03-17 23:52:07.038 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:52:07.038 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:52:07.038 -07 000000623 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 23:52:07.108 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:52:07.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:52:07.198 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:52:07.198 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:52:07.208 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:52:07.208 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:52:07.208 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:07.208 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:52:07.208 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:52:07.208 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:07.208 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:52:07.208 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:52:07.208 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 23:52:07.218 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 23:52:07.408 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 23:52:07.408 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:52:07.458 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:07.458 -07 000000541 INF: FPGA: Recv YRDPOS 143079
17-03-17 23:52:07.468 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:07.468 -07 000000478 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:07.468 -07 000000478 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:52:07.468 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.184 mm/sec
17-03-17 23:52:08.418 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:08.418 -07 000000623 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:52:08.428 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:08.428 -07 000000478 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:08.448 -07 000000478 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:52:08.448 -07 000000478 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:52:08.448 -07 000000478 INF: Y Motor: Moved to 69.8633 after 1455 ms (table move)
17-03-17 23:52:08.458 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174200 mm (DAC = 38054)
17-03-17 23:52:08.458 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:08.458 -07 000000478 INF: FPGA: Recv ZSGSRD 36399
17-03-17 23:52:08.468 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:08.468 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:08.468 -07 000000623 INF: FPGA: Recv ZSGSRD 36406
17-03-17 23:52:08.478 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:08.478 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:08.478 -07 000000478 INF: FPGA: Recv ZSGSRD 36416
17-03-17 23:52:08.488 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:08.488 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:08.488 -07 000000415 INF: FPGA: Recv ZSGSRD 36406
17-03-17 23:52:08.498 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:08.498 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:08.498 -07 000000541 INF: FPGA: Recv ZSGSRD 36406
17-03-17 23:52:08.508 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:08.508 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:08.508 -07 000000415 INF: FPGA: Recv ZSGSRD 36403
17-03-17 23:52:08.518 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:08.518 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:08.518 -07 000000541 INF: FPGA: Recv ZSGSRD 36402
17-03-17 23:52:08.528 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:08.528 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:08.528 -07 000000415 INF: FPGA: Recv ZSGSRD 36411
17-03-17 23:52:08.538 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:08.538 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:08.538 -07 000000541 INF: FPGA: Recv ZSGSRD 36403
17-03-17 23:52:08.548 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:08.548 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:08.548 -07 000000415 INF: FPGA: Recv ZSGSRD 36405
17-03-17 23:52:08.558 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:08.558 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:08.558 -07 000000541 INF: FPGA: Recv ZPIEZORD 32443
17-03-17 23:52:08.568 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:08.568 -07 000000475 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.807 V. Piezo Error = -8.8 V.
17-03-17 23:52:08.568 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36406 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36406 (-173.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36399 (-173.3 uncal um), Max = 36416 (-173.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:52:08.568 -07 000000475 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36406, posNoise = 10, negNoise = 7
17-03-17 23:52:08.568 -07 000000475 INF: Z Motor: After move to -0.174200, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:08.568 -07 000000475 INF: Z Motor: Settle wait time = 1458 ms, measure time = 110 ms (allowed 150 ms), total time = 1568 ms
17-03-17 23:52:08.568 -07 000000475 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:52:08.608 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-17 23:52:08.608 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:52:08.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:08.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:08.608 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:08.608 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:08.618 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:52:08.618 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:08.618 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:52:08.618 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:52:08.618 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:52:08.618 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:52:08.628 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:52:08.628 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:52:08.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:52:08.678 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:52:08.978 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:52:08.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:52:08.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:52:08.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:52:09.008 -07 000000459 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:52:09.018 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 23:52:09.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-17 23:52:09.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:52:09.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:09.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:52:09.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:52:09.118 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:09.118 -07 000000502 INF: Autofocus start
17-03-17 23:52:09.118 -07 000000502 INF: MeasureProfile start
17-03-17 23:52:09.118 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:09.128 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:52:09.128 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:52:09.128 -07 000000502 INF: MeasureProfile done
17-03-17 23:52:09.128 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:52:09.128 -07 000000502 INF: Autofocus finished
17-03-17 23:52:09.328 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:52:09.328 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:52:09.328 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.174203219244084. ----------
17-03-17 23:52:09.328 -07 000000610 INF: Cycle	79	Tile	13	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:52:09.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36569, sync = True, waitForSettling = True)
17-03-17 23:52:09.338 -07 000000610 INF: Z Motor: Moving to -0.167402 mm, started at -0.174203 mm, distance = 6.80 um
17-03-17 23:52:09.338 -07 000000610 INF: FPGA: Xmit ZDACW 36569\n [Z Motor]
17-03-17 23:52:09.338 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:52:09.348 -07 000000610 INF: FPGA: 'ZDACW 36569' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:09.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:09.348 -07 000000541 INF: FPGA: Recv ZDACR 36569
17-03-17 23:52:09.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:09.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:52:09.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:09.508 -07 000000547 INF: FPGA: Recv ZSGSRD 35349
17-03-17 23:52:09.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:09.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:09.518 -07 000000502 INF: FPGA: Recv ZSGSRD 35344
17-03-17 23:52:09.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:09.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:09.528 -07 000000501 INF: FPGA: Recv ZSGSRD 35344
17-03-17 23:52:09.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:09.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:09.538 -07 000000501 INF: FPGA: Recv ZSGSRD 35351
17-03-17 23:52:09.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:09.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:09.548 -07 000000541 INF: FPGA: Recv ZSGSRD 35349
17-03-17 23:52:09.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:09.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:09.558 -07 000000541 INF: FPGA: Recv ZSGSRD 35348
17-03-17 23:52:09.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:09.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:09.568 -07 000000415 INF: FPGA: Recv ZSGSRD 35351
17-03-17 23:52:09.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:52:09.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:09.578 -07 000000459 INF: FPGA: Recv ZSGSRD 35351
17-03-17 23:52:09.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:09.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:09.588 -07 000000459 INF: FPGA: Recv ZSGSRD 35351
17-03-17 23:52:09.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:09.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:09.598 -07 000000547 INF: FPGA: Recv ZSGSRD 35345
17-03-17 23:52:09.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:09.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:09.608 -07 000000382 INF: FPGA: Recv ZPIEZORD 31008
17-03-17 23:52:09.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:09.618 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.580 V. Piezo Error = -9.6 V.
17-03-17 23:52:09.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35348 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35349 (-166.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35344 (-166.5 uncal um), Max = 35351 (-166.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:52:09.618 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35348, posNoise = 3, negNoise = 4
17-03-17 23:52:09.618 -07 000000610 INF: Z Motor: After move to -0.167402, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:09.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:52:09.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:09.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:09.618 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:09.618 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:09.618 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:52:09.618 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:09.618 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:52:09.618 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:52:09.618 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:52:09.618 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:52:09.618 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:52:09.618 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:52:09.618 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:52:09.628 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:52:09.628 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:52:09.628 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:52:09.638 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:52:09.638 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:52:09.638 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:52:09.638 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:52:09.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36746 150\n [Camera]
17-03-17 23:52:09.848 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:52:10.878 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:52:10.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:52:10.878 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:10.878 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:10.878 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:52:10.888 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:52:10.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:52:10.888 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:10.888 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:10.888 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:52:11.078 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36746 1422
17-03-17 23:52:11.228 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:52:11.278 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:52:11.278 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:52:11.278 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:11.288 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:52:11.288 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:52:11.288 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:11.288 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:11.288 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:52:11.288 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:11.298 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:52:11.728 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:52:11.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:52:11.728 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:11.728 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:11.728 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:52:11.728 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:52:11.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:52:11.728 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:11.728 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:11.728 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:52:11.918 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:52:11.918 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:52:11.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36746 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:52:12.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:52:12.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.167406402798101. ------
17-03-17 23:52:12.048 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:12.048 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17385 mm
17-03-17 23:52:12.048 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:52:12.048 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:52:12.048 -07 000000415 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 23:52:12.048 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 37978, sync = True, waitForSettling = False)
17-03-17 23:52:12.048 -07 000000478 INF: Z Motor: Moving to -0.173852 mm, started at -0.167406 mm, distance = -6.45 um
17-03-17 23:52:12.058 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:12.058 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:12.058 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:52:12.058 -07 000000547 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:52:12.068 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:52:12.068 -07 000000415 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:12.068 -07 000000415 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:52:12.068 -07 000000415 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:52:12.068 -07 000000478 INF: FPGA: Xmit ZDACW 37978\n [Z Motor]
17-03-17 23:52:12.068 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:52:12.078 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:52:12.078 -07 000000478 INF: FPGA: 'ZDACW 37978' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:52:12.088 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:52:12.098 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:12.098 -07 000000459 INF: FPGA: Recv ZDACR 37978
17-03-17 23:52:12.108 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:52:12.108 -07 000000478 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 23:52:12.108 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:52:12.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:52:12.128 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:52:12.128 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:52:12.128 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:12.128 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:52:12.128 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:52:12.128 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:12.138 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:12.138 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:52:12.138 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:52:12.138 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:52:12.278 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:52:12.278 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 23:52:12.358 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.983999,
17-03-17 23:52:12.458 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 23:52:12.458 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:52:12.498 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:12.508 -07 000000623 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:52:12.508 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:52:12.508 -07 000000415 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:12.508 -07 000000415 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:52:12.508 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 23:52:13.458 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:13.458 -07 000000547 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:52:13.468 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:13.468 -07 000000415 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:13.488 -07 000000415 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:52:13.488 -07 000000415 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:52:13.488 -07 000000415 INF: Y Motor: Moved to 70.6880 after 1442 ms (table move)
17-03-17 23:52:13.498 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173852 mm (DAC = 37978)
17-03-17 23:52:13.498 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:13.498 -07 000000501 INF: FPGA: Recv ZSGSRD 36352
17-03-17 23:52:13.508 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:13.508 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:13.508 -07 000000478 INF: FPGA: Recv ZSGSRD 36351
17-03-17 23:52:13.518 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:13.518 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:13.518 -07 000000429 INF: FPGA: Recv ZSGSRD 36352
17-03-17 23:52:13.528 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:13.528 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:13.528 -07 000000415 INF: FPGA: Recv ZSGSRD 36350
17-03-17 23:52:13.538 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:13.538 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:13.538 -07 000000429 INF: FPGA: Recv ZSGSRD 36360
17-03-17 23:52:13.548 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:13.548 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:13.548 -07 000000478 INF: FPGA: Recv ZSGSRD 36354
17-03-17 23:52:13.558 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:13.558 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:13.558 -07 000000623 INF: FPGA: Recv ZSGSRD 36359
17-03-17 23:52:13.568 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:13.568 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:13.568 -07 000000501 INF: FPGA: Recv ZSGSRD 36349
17-03-17 23:52:13.578 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:13.578 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:13.578 -07 000000462 INF: FPGA: Recv ZSGSRD 36345
17-03-17 23:52:13.588 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:13.588 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:13.588 -07 000000502 INF: FPGA: Recv ZSGSRD 36357
17-03-17 23:52:13.598 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:13.598 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:13.598 -07 000000429 INF: FPGA: Recv ZPIEZORD 32378
17-03-17 23:52:13.608 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:13.608 -07 000000382 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.795 V. Piezo Error = -8.8 V.
17-03-17 23:52:13.608 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36353 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36352 (-173.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36345 (-172.9 uncal um), Max = 36360 (-173.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:52:13.608 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36353, posNoise = 7, negNoise = 8
17-03-17 23:52:13.608 -07 000000382 INF: Z Motor: After move to -0.173852, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:13.608 -07 000000382 INF: Z Motor: Settle wait time = 1445 ms, measure time = 110 ms (allowed 150 ms), total time = 1555 ms
17-03-17 23:52:13.608 -07 000000382 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:52:13.648 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 23:52:13.648 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:52:13.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:13.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:13.648 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:13.648 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:52:13.648 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:13.648 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:13.658 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 23:52:13.658 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:52:13.658 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:52:13.658 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:52:13.658 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:52:13.658 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:52:13.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:52:13.708 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:52:14.008 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:52:14.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:52:14.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:52:14.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:52:14.048 -07 000000502 INF: FPGA: Recv @CAMSNAP 382
17-03-17 23:52:14.048 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 23:52:14.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-17 23:52:14.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:52:14.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:14.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:52:14.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:52:14.248 -07 000000429 INF: Autofocus start
17-03-17 23:52:14.248 -07 000000429 INF: MeasureProfile start
17-03-17 23:52:14.248 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:14.248 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:14.258 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:52:14.258 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:52:14.258 -07 000000429 INF: MeasureProfile done
17-03-17 23:52:14.258 -07 000000429 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 23:52:14.258 -07 000000429 INF: Autofocus finished
17-03-17 23:52:14.458 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:52:14.458 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 23:52:14.458 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173862736000571. ----------
17-03-17 23:52:14.468 -07 000000610 INF: Cycle	79	Tile	14	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:52:14.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36421, sync = True, waitForSettling = True)
17-03-17 23:52:14.468 -07 000000610 INF: Z Motor: Moving to -0.166725 mm, started at -0.173863 mm, distance = 7.14 um
17-03-17 23:52:14.468 -07 000000610 INF: FPGA: Xmit ZDACW 36421\n [Z Motor]
17-03-17 23:52:14.468 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:52:14.478 -07 000000610 INF: FPGA: 'ZDACW 36421' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:52:14.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:14.478 -07 000000382 INF: FPGA: Recv ZDACR 36421
17-03-17 23:52:14.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:14.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:52:14.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:14.638 -07 000000382 INF: FPGA: Recv ZSGSRD 35238
17-03-17 23:52:14.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:14.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:14.648 -07 000000382 INF: FPGA: Recv ZSGSRD 35245
17-03-17 23:52:14.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:14.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:14.658 -07 000000448 INF: FPGA: Recv ZSGSRD 35241
17-03-17 23:52:14.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:14.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:14.668 -07 000000448 INF: FPGA: Recv ZSGSRD 35243
17-03-17 23:52:14.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:14.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:14.678 -07 000000502 INF: FPGA: Recv ZSGSRD 35245
17-03-17 23:52:14.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:14.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:14.688 -07 000000502 INF: FPGA: Recv ZSGSRD 35244
17-03-17 23:52:14.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:14.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:14.698 -07 000000551 INF: FPGA: Recv ZSGSRD 35248
17-03-17 23:52:14.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:14.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:14.708 -07 000000551 INF: FPGA: Recv ZSGSRD 35242
17-03-17 23:52:14.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:14.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:14.718 -07 000000551 INF: FPGA: Recv ZSGSRD 35241
17-03-17 23:52:14.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:14.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:14.728 -07 000000448 INF: FPGA: Recv ZSGSRD 35241
17-03-17 23:52:14.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:14.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:14.738 -07 000000623 INF: FPGA: Recv ZPIEZORD 30884
17-03-17 23:52:14.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:14.748 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.6 V.
17-03-17 23:52:14.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35243 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35242 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35238 (-165.8 uncal um), Max = 35248 (-165.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:52:14.748 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35243, posNoise = 5, negNoise = 5
17-03-17 23:52:14.748 -07 000000610 INF: Z Motor: After move to -0.166725, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:14.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 23:52:14.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:14.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:14.748 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:14.748 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:52:14.748 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:14.748 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:52:14.748 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:52:14.748 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:52:14.748 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:52:14.748 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:14.748 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:52:14.748 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:52:14.758 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:52:14.758 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:52:14.758 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:52:14.758 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:52:14.768 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:52:14.768 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:52:14.768 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:52:14.768 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:52:14.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36598 150\n [Camera]
17-03-17 23:52:14.968 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:52:16.008 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:52:16.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:52:16.008 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:16.008 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:52:16.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:52:16.018 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:16.018 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:16.018 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:52:16.018 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:16.018 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:52:16.198 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36598 1422
17-03-17 23:52:16.358 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1574
17-03-17 23:52:16.388 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 23:52:16.388 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 23:52:16.388 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:16.398 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 23:52:16.398 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 23:52:16.398 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:16.398 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:52:16.398 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:52:16.398 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:52:16.408 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:52:16.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2074
17-03-17 23:52:16.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2074
17-03-17 23:52:16.858 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:16.858 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:16.858 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:52:16.858 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2074
17-03-17 23:52:16.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2074
17-03-17 23:52:16.858 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:16.858 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:16.858 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:52:17.048 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:52:17.048 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:52:17.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36598 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:52:17.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:52:17.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.166731860523216. ------
17-03-17 23:52:17.048 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:17.048 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17340 mm
17-03-17 23:52:17.048 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:52:17.048 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:52:17.048 -07 000000475 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 23:52:17.048 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37879, sync = True, waitForSettling = False)
17-03-17 23:52:17.048 -07 000000551 INF: Z Motor: Moving to -0.173399 mm, started at -0.166732 mm, distance = -6.67 um
17-03-17 23:52:17.048 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:17.058 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:52:17.058 -07 000000551 INF: FPGA: Xmit ZDACW 37879\n [Z Motor]
17-03-17 23:52:17.168 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:52:17.168 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:52:17.168 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:52:17.178 -07 000000551 INF: FPGA: 'ZDACW 37879' command took 110 ms to send, 0 ms to get response, and 121 ms overall
17-03-17 23:52:17.178 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:17.178 -07 000000429 INF: FPGA: Recv ZDACR 37879
17-03-17 23:52:17.188 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:17.188 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:17.188 -07 000000551 INF: Z Motor: MoveAbsStepped took 131 ms (did NOT wait for settling yet))
17-03-17 23:52:17.188 -07 000000462 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:52:17.198 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:52:17.198 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 141 ms overall
17-03-17 23:52:17.198 -07 000000475 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:17.198 -07 000000475 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:52:17.198 -07 000000475 INF: Y Motor: Moving 1351 steps-30
17-03-17 23:52:17.208 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:52:17.258 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:52:17.258 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:52:17.258 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:17.258 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:17.258 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:52:17.258 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:52:17.258 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:52:17.258 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:17.258 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:17.268 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:52:17.398 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:52:17.398 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 238 ms overall
17-03-17 23:52:17.578 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 23:52:17.578 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 23:52:17.618 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:17.628 -07 000000448 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:52:17.638 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:17.638 -07 000000475 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:17.638 -07 000000475 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:52:17.638 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.200 mm/sec
17-03-17 23:52:17.718 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.989471,
17-03-17 23:52:18.588 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:18.588 -07 000000502 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:52:18.598 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:18.598 -07 000000475 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:18.618 -07 000000475 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:52:18.618 -07 000000475 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:52:18.618 -07 000000475 INF: Y Motor: Moved to 71.5190 after 1569 ms (table move)
17-03-17 23:52:18.628 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173399 mm (DAC = 37879)
17-03-17 23:52:18.628 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:18.628 -07 000000475 INF: FPGA: Recv ZSGSRD 36284
17-03-17 23:52:18.638 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:52:18.638 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:18.638 -07 000000547 INF: FPGA: Recv ZSGSRD 36278
17-03-17 23:52:18.648 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:18.648 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:18.648 -07 000000475 INF: FPGA: Recv ZSGSRD 36287
17-03-17 23:52:18.658 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:18.658 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:18.658 -07 000000475 INF: FPGA: Recv ZSGSRD 36289
17-03-17 23:52:18.668 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:18.668 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:18.668 -07 000000475 INF: FPGA: Recv ZSGSRD 36286
17-03-17 23:52:18.678 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:18.678 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:18.678 -07 000000475 INF: FPGA: Recv ZSGSRD 36286
17-03-17 23:52:18.688 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:18.688 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:18.688 -07 000000478 INF: FPGA: Recv ZSGSRD 36276
17-03-17 23:52:18.698 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:18.698 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:18.698 -07 000000478 INF: FPGA: Recv ZSGSRD 36280
17-03-17 23:52:18.708 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:18.718 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:18.718 -07 000000551 INF: FPGA: Recv ZSGSRD 36290
17-03-17 23:52:18.728 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:52:18.748 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:18.748 -07 000000478 INF: FPGA: Recv ZSGSRD 36288
17-03-17 23:52:18.758 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:52:18.768 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:18.768 -07 000000459 INF: FPGA: Recv ZPIEZORD 32295
17-03-17 23:52:18.778 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:52:18.778 -07 000000623 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.780 V. Piezo Error = -8.8 V.
17-03-17 23:52:18.778 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36284 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36286 (-172.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36276 (-172.5 uncal um), Max = 36290 (-172.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:52:18.778 -07 000000623 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36284, posNoise = 6, negNoise = 8
17-03-17 23:52:18.778 -07 000000623 INF: Z Motor: After move to -0.173399, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:18.778 -07 000000623 INF: Z Motor: Settle wait time = 1572 ms, measure time = 149 ms (allowed 150 ms), total time = 1721 ms
17-03-17 23:52:18.778 -07 000000623 INF: Z Motor: Waiting extra 1 ms after reading position to reach expected total of 150 ms
17-03-17 23:52:18.788 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1733 ms
17-03-17 23:52:18.788 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:52:18.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:18.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:18.788 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:18.788 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:52:18.788 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:18.788 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:18.788 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:52:18.788 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:52:18.798 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:52:18.798 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:52:18.798 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:52:18.798 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:52:18.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:52:18.848 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:52:19.148 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:52:19.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:52:19.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:52:19.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:52:19.188 -07 000000478 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:52:19.188 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:52:19.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-17 23:52:19.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:52:19.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:19.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:52:19.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:52:19.388 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:19.388 -07 000000382 INF: Autofocus start
17-03-17 23:52:19.388 -07 000000382 INF: MeasureProfile start
17-03-17 23:52:19.388 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:19.398 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:52:19.398 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:52:19.398 -07 000000382 INF: MeasureProfile done
17-03-17 23:52:19.398 -07 000000382 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:52:19.398 -07 000000382 INF: Autofocus finished
17-03-17 23:52:19.598 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:52:19.598 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 23:52:19.598 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.17341946536279. ----------
17-03-17 23:52:19.598 -07 000000610 INF: Cycle	79	Tile	15	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:52:19.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36359, sync = True, waitForSettling = True)
17-03-17 23:52:19.608 -07 000000610 INF: Z Motor: Moving to -0.166441 mm, started at -0.173419 mm, distance = 6.98 um
17-03-17 23:52:19.608 -07 000000610 INF: FPGA: Xmit ZDACW 36359\n [Z Motor]
17-03-17 23:52:19.608 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:52:19.618 -07 000000610 INF: FPGA: 'ZDACW 36359' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:19.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:19.618 -07 000000623 INF: FPGA: Recv ZDACR 36359
17-03-17 23:52:19.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:19.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:52:19.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:19.778 -07 000000623 INF: FPGA: Recv ZSGSRD 35200
17-03-17 23:52:19.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:19.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:19.788 -07 000000623 INF: FPGA: Recv ZSGSRD 35201
17-03-17 23:52:19.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:19.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:19.798 -07 000000623 INF: FPGA: Recv ZSGSRD 35197
17-03-17 23:52:19.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:19.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:19.808 -07 000000478 INF: FPGA: Recv ZSGSRD 35200
17-03-17 23:52:19.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:19.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:19.818 -07 000000478 INF: FPGA: Recv ZSGSRD 35201
17-03-17 23:52:19.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:19.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:19.828 -07 000000478 INF: FPGA: Recv ZSGSRD 35196
17-03-17 23:52:19.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:19.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:19.838 -07 000000429 INF: FPGA: Recv ZSGSRD 35208
17-03-17 23:52:19.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:19.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:19.848 -07 000000429 INF: FPGA: Recv ZSGSRD 35198
17-03-17 23:52:19.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:19.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:19.858 -07 000000382 INF: FPGA: Recv ZSGSRD 35198
17-03-17 23:52:19.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:19.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:19.868 -07 000000448 INF: FPGA: Recv ZSGSRD 35197
17-03-17 23:52:19.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:19.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:19.878 -07 000000623 INF: FPGA: Recv ZPIEZORD 30815
17-03-17 23:52:19.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:19.888 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.548 V. Piezo Error = -9.7 V.
17-03-17 23:52:19.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35200 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35199 (-165.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35196 (-165.6 uncal um), Max = 35208 (-165.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:52:19.888 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35200, posNoise = 8, negNoise = 4
17-03-17 23:52:19.888 -07 000000610 INF: Z Motor: After move to -0.166441, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:19.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 23:52:19.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:19.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:19.888 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:19.888 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:19.888 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:52:19.888 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:19.888 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:52:19.888 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:52:19.888 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:52:19.888 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:52:19.888 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:52:19.888 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:52:19.898 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:52:19.898 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:52:19.898 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:52:19.898 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:52:19.908 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 23:52:19.908 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:52:19.908 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 23:52:19.908 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:52:19.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36535 150\n [Camera]
17-03-17 23:52:20.108 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:52:21.148 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:52:21.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:52:21.148 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:21.158 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:52:21.158 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:21.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:52:21.158 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:52:21.158 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:21.158 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:21.158 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:52:21.338 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36535 1422
17-03-17 23:52:21.488 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:52:21.548 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 23:52:21.548 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:52:21.548 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:21.548 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:21.548 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:52:21.558 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:52:21.558 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:52:21.558 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:21.558 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:21.568 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:52:21.988 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:52:21.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:52:21.988 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:21.998 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:52:21.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:52:21.998 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:22.008 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:22.008 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:52:22.008 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:22.008 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:52:22.108 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:52:22.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:52:22.178 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:52:22.188 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:52:22.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36535 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall
17-03-17 23:52:22.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:52:22.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.166455619401121. ------
17-03-17 23:52:22.188 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:22.188 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17285 mm
17-03-17 23:52:22.188 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:52:22.198 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:22.198 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:52:22.198 -07 000000462 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 23:52:22.198 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:22.198 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:52:22.198 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37758, sync = True, waitForSettling = False)
17-03-17 23:52:22.198 -07 000000551 INF: Z Motor: Moving to -0.172845 mm, started at -0.166456 mm, distance = -6.39 um
17-03-17 23:52:22.198 -07 000000459 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:52:22.208 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:52:22.208 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:22.208 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:22.208 -07 000000462 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:52:22.208 -07 000000462 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:52:22.218 -07 000000551 INF: FPGA: Xmit ZDACW 37758\n [Z Motor]
17-03-17 23:52:22.218 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:52:22.228 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:52:22.228 -07 000000551 INF: FPGA: 'ZDACW 37758' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 23:52:22.238 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:22.238 -07 000000382 INF: FPGA: Recv ZDACR 37758
17-03-17 23:52:22.248 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:52:22.248 -07 000000551 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 23:52:22.408 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:52:22.408 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:52:22.408 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 23:52:22.408 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:52:22.408 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:22.408 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:52:22.408 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:52:22.408 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:22.408 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:52:22.408 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-17 23:52:22.418 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:52:22.418 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 424 ms.
17-03-17 23:52:22.598 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 23:52:22.598 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:52:22.648 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:22.648 -07 000000551 INF: FPGA: Recv YRDPOS 148172
17-03-17 23:52:22.658 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:22.658 -07 000000462 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:22.658 -07 000000462 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 23:52:22.658 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 23:52:23.078 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.99219,
17-03-17 23:52:23.608 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:23.608 -07 000000623 INF: FPGA: Recv YRDPOS 148172
17-03-17 23:52:23.618 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:23.618 -07 000000462 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:23.638 -07 000000462 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:52:23.638 -07 000000462 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:52:23.638 -07 000000462 INF: Y Motor: Moved to 72.3496 after 1447 ms (table move)
17-03-17 23:52:23.648 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172845 mm (DAC = 37758)
17-03-17 23:52:23.648 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:23.648 -07 000000429 INF: FPGA: Recv ZSGSRD 36198
17-03-17 23:52:23.658 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:52:23.658 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:23.658 -07 000000429 INF: FPGA: Recv ZSGSRD 36195
17-03-17 23:52:23.668 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:23.668 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:23.668 -07 000000448 INF: FPGA: Recv ZSGSRD 36189
17-03-17 23:52:23.678 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:23.678 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:23.678 -07 000000462 INF: FPGA: Recv ZSGSRD 36204
17-03-17 23:52:23.688 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:23.688 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:23.688 -07 000000448 INF: FPGA: Recv ZSGSRD 36198
17-03-17 23:52:23.698 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:23.698 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:23.698 -07 000000448 INF: FPGA: Recv ZSGSRD 36193
17-03-17 23:52:23.708 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:23.708 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:23.708 -07 000000429 INF: FPGA: Recv ZSGSRD 36195
17-03-17 23:52:23.718 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:23.718 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:23.718 -07 000000382 INF: FPGA: Recv ZSGSRD 36203
17-03-17 23:52:23.728 -07 000000475 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:23.728 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:23.728 -07 000000382 INF: FPGA: Recv ZSGSRD 36199
17-03-17 23:52:23.738 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:23.738 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:23.738 -07 000000382 INF: FPGA: Recv ZSGSRD 36195
17-03-17 23:52:23.748 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:23.748 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:23.748 -07 000000547 INF: FPGA: Recv ZPIEZORD 32224
17-03-17 23:52:23.758 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:23.758 -07 000000475 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.762 V. Piezo Error = -8.8 V.
17-03-17 23:52:23.758 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36197 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36196 (-172.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36189 (-171.9 uncal um), Max = 36204 (-172.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:52:23.758 -07 000000475 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36197, posNoise = 7, negNoise = 8
17-03-17 23:52:23.758 -07 000000475 INF: Z Motor: After move to -0.172845, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:23.758 -07 000000475 INF: Z Motor: Settle wait time = 1450 ms, measure time = 109 ms (allowed 150 ms), total time = 1559 ms
17-03-17 23:52:23.758 -07 000000475 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:52:23.808 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-17 23:52:23.808 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:52:23.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:23.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:23.808 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:23.808 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:23.808 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:52:23.808 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:23.808 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:52:23.808 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:52:23.818 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:52:23.818 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:52:23.818 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:52:23.818 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:52:23.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:52:23.868 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:52:24.168 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:52:24.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:52:24.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:52:24.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:52:24.208 -07 000000547 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:52:24.208 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 23:52:24.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-17 23:52:24.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:52:24.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:24.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:52:24.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:52:24.408 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:24.408 -07 000000478 INF: Autofocus start
17-03-17 23:52:24.408 -07 000000478 INF: MeasureProfile start
17-03-17 23:52:24.408 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:24.418 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:52:24.418 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:52:24.418 -07 000000478 INF: MeasureProfile done
17-03-17 23:52:24.418 -07 000000478 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:52:24.418 -07 000000478 INF: Autofocus finished
17-03-17 23:52:24.618 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:52:24.618 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:52:24.618 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.172860558906456. ----------
17-03-17 23:52:24.618 -07 000000610 INF: Cycle	79	Tile	16	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:52:24.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36255, sync = True, waitForSettling = True)
17-03-17 23:52:24.618 -07 000000610 INF: Z Motor: Moving to -0.165965 mm, started at -0.172861 mm, distance = 6.90 um
17-03-17 23:52:24.618 -07 000000610 INF: FPGA: Xmit ZDACW 36255\n [Z Motor]
17-03-17 23:52:24.628 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:52:24.638 -07 000000610 INF: FPGA: 'ZDACW 36255' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:24.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:24.638 -07 000000475 INF: FPGA: Recv ZDACR 36255
17-03-17 23:52:24.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:24.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:52:24.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:24.798 -07 000000462 INF: FPGA: Recv ZSGSRD 35125
17-03-17 23:52:24.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:24.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:24.808 -07 000000623 INF: FPGA: Recv ZSGSRD 35126
17-03-17 23:52:24.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:24.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:24.818 -07 000000462 INF: FPGA: Recv ZSGSRD 35128
17-03-17 23:52:24.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:24.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:24.828 -07 000000462 INF: FPGA: Recv ZSGSRD 35123
17-03-17 23:52:24.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:24.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:24.838 -07 000000462 INF: FPGA: Recv ZSGSRD 35126
17-03-17 23:52:24.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:24.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:24.848 -07 000000462 INF: FPGA: Recv ZSGSRD 35124
17-03-17 23:52:24.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:24.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:24.858 -07 000000462 INF: FPGA: Recv ZSGSRD 35131
17-03-17 23:52:24.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:24.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:24.868 -07 000000462 INF: FPGA: Recv ZSGSRD 35131
17-03-17 23:52:24.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:24.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:24.878 -07 000000462 INF: FPGA: Recv ZSGSRD 35125
17-03-17 23:52:24.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:24.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:24.888 -07 000000462 INF: FPGA: Recv ZSGSRD 35124
17-03-17 23:52:24.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:24.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:24.898 -07 000000462 INF: FPGA: Recv ZPIEZORD 30733
17-03-17 23:52:24.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:24.908 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.532 V. Piezo Error = -9.7 V.
17-03-17 23:52:24.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35126 (-165.1 uncal um), Error = 0.8 uncal um, Median = 35126 (-165.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35123 (-165.1 uncal um), Max = 35131 (-165.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:52:24.908 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35126, posNoise = 5, negNoise = 3
17-03-17 23:52:24.908 -07 000000610 INF: Z Motor: After move to -0.165965, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:24.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:52:24.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:24.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:24.908 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:24.908 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:24.908 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:52:24.908 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:24.908 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:52:24.908 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:52:24.908 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:52:24.908 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:52:24.908 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:52:24.908 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:52:24.908 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:52:24.908 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:52:24.918 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:52:24.918 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:52:24.928 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:52:24.928 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:52:24.928 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:52:24.928 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:52:24.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36432 150\n [Camera]
17-03-17 23:52:25.128 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:52:26.168 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:52:26.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:52:26.168 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:26.168 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:26.168 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:52:26.168 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:52:26.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:52:26.168 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:26.168 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:26.178 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:52:26.368 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36432 1426
17-03-17 23:52:26.508 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:52:26.548 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 23:52:26.548 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:52:26.548 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:26.558 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:26.558 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 23:52:26.558 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:52:26.558 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:26.558 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:52:26.568 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:26.568 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:52:27.008 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:52:27.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:52:27.008 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:27.018 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:27.018 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:52:27.018 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:52:27.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:52:27.018 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:27.018 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:27.018 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:52:27.108 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:52:27.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:52:27.208 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:52:27.208 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:52:27.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36432 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall
17-03-17 23:52:27.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:52:27.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.16598022770263. ------
17-03-17 23:52:27.208 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:27.208 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17262 mm
17-03-17 23:52:27.208 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:52:27.208 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:27.208 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:52:27.208 -07 000000475 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 23:52:27.218 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:52:27.218 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:27.218 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37710, sync = True, waitForSettling = False)
17-03-17 23:52:27.218 -07 000000382 INF: Z Motor: Moving to -0.172625 mm, started at -0.165980 mm, distance = -6.65 um
17-03-17 23:52:27.218 -07 000000462 INF: FPGA: Recv YRDPOS 148173
17-03-17 23:52:27.228 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:27.228 -07 000000475 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:27.228 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:52:27.348 -07 000000382 INF: FPGA: Xmit ZDACW 37710\n [Z Motor]
17-03-17 23:52:27.348 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:52:27.358 -07 000000382 INF: FPGA: 'ZDACW 37710' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 23:52:27.358 -07 000000475 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:52:27.358 -07 000000475 INF: Y Motor: Moving 1348 steps-27
17-03-17 23:52:27.358 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:27.358 -07 000000429 INF: FPGA: Recv ZDACR 37710
17-03-17 23:52:27.368 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:27.368 -07 000000382 INF: Z Motor: MoveAbsStepped took 149 ms (did NOT wait for settling yet))
17-03-17 23:52:27.368 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:52:27.418 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 23:52:27.418 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:52:27.418 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:27.418 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:52:27.418 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:52:27.418 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:27.428 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:27.428 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:52:27.428 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 79 ms to get response, and 213 ms overall
17-03-17 23:52:27.428 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:52:27.428 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 23:52:27.428 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:52:27.738 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 23:52:27.738 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:52:27.778 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:27.788 -07 000000462 INF: FPGA: Recv YRDPOS 149864
17-03-17 23:52:27.798 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:27.798 -07 000000475 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:27.798 -07 000000475 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 23:52:27.798 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.173 mm/sec
17-03-17 23:52:28.438 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.990831,
17-03-17 23:52:28.748 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:28.748 -07 000000415 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:52:28.758 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:28.758 -07 000000475 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:28.788 -07 000000475 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:52:28.788 -07 000000475 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:52:28.788 -07 000000475 INF: Y Motor: Moved to 73.1763 after 1575 ms (table move)
17-03-17 23:52:28.788 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172625 mm (DAC = 37710)
17-03-17 23:52:28.788 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:28.798 -07 000000448 INF: FPGA: Recv ZSGSRD 36164
17-03-17 23:52:28.798 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:52:28.798 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:28.798 -07 000000415 INF: FPGA: Recv ZSGSRD 36164
17-03-17 23:52:28.808 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:52:28.808 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:28.808 -07 000000541 INF: FPGA: Recv ZSGSRD 36169
17-03-17 23:52:28.818 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:28.818 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:28.818 -07 000000478 INF: FPGA: Recv ZSGSRD 36169
17-03-17 23:52:28.828 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:28.828 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:28.828 -07 000000547 INF: FPGA: Recv ZSGSRD 36163
17-03-17 23:52:28.838 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:28.838 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:28.838 -07 000000502 INF: FPGA: Recv ZSGSRD 36165
17-03-17 23:52:28.848 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:28.848 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:28.848 -07 000000462 INF: FPGA: Recv ZSGSRD 36162
17-03-17 23:52:28.858 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:28.858 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:28.858 -07 000000623 INF: FPGA: Recv ZSGSRD 36155
17-03-17 23:52:28.868 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:28.868 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:28.868 -07 000000448 INF: FPGA: Recv ZSGSRD 36158
17-03-17 23:52:28.878 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:28.878 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:28.878 -07 000000429 INF: FPGA: Recv ZSGSRD 36161
17-03-17 23:52:28.888 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:28.888 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:28.888 -07 000000459 INF: FPGA: Recv ZPIEZORD 32147
17-03-17 23:52:28.898 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:28.898 -07 000000551 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.9 V.
17-03-17 23:52:28.898 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36163 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36164 (-171.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36155 (-171.7 uncal um), Max = 36169 (-171.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:52:28.898 -07 000000551 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36163, posNoise = 6, negNoise = 8
17-03-17 23:52:28.898 -07 000000551 INF: Z Motor: After move to -0.172625, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:28.898 -07 000000551 INF: Z Motor: Settle wait time = 1578 ms, measure time = 101 ms (allowed 150 ms), total time = 1679 ms
17-03-17 23:52:28.898 -07 000000551 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:52:28.948 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1734 ms
17-03-17 23:52:28.948 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:52:28.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:28.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:28.958 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:52:28.958 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:28.958 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:28.958 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:28.958 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:52:28.958 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:52:28.958 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:52:28.968 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:52:28.968 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:52:28.968 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:52:28.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:52:29.018 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:52:29.318 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:52:29.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:52:29.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:52:29.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:52:29.358 -07 000000415 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:52:29.368 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 23:52:29.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 387 ms overall
17-03-17 23:52:29.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:52:29.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:29.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:52:29.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:52:29.468 -07 000000541 INF: Autofocus start
17-03-17 23:52:29.468 -07 000000541 INF: MeasureProfile start
17-03-17 23:52:29.478 -07 000000541 INF: MeasureProfile done
17-03-17 23:52:29.478 -07 000000541 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:52:29.478 -07 000000541 INF: Autofocus finished
17-03-17 23:52:29.488 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:29.488 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:29.498 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:52:29.498 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:52:29.698 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:52:29.698 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:52:29.698 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.172642135693636. ----------
17-03-17 23:52:29.698 -07 000000610 INF: Cycle	79	Tile	17	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:52:29.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36207, sync = True, waitForSettling = True)
17-03-17 23:52:29.708 -07 000000610 INF: Z Motor: Moving to -0.165745 mm, started at -0.172642 mm, distance = 6.90 um
17-03-17 23:52:29.708 -07 000000610 INF: FPGA: Xmit ZDACW 36207\n [Z Motor]
17-03-17 23:52:29.708 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:52:29.718 -07 000000610 INF: FPGA: 'ZDACW 36207' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:29.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:29.718 -07 000000382 INF: FPGA: Recv ZDACR 36207
17-03-17 23:52:29.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:29.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:52:29.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:29.878 -07 000000623 INF: FPGA: Recv ZSGSRD 35095
17-03-17 23:52:29.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:29.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:29.888 -07 000000541 INF: FPGA: Recv ZSGSRD 35092
17-03-17 23:52:29.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:52:29.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:29.898 -07 000000475 INF: FPGA: Recv ZSGSRD 35091
17-03-17 23:52:29.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:29.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:29.908 -07 000000502 INF: FPGA: Recv ZSGSRD 35089
17-03-17 23:52:29.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:29.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:29.918 -07 000000382 INF: FPGA: Recv ZSGSRD 35094
17-03-17 23:52:29.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:29.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:29.928 -07 000000448 INF: FPGA: Recv ZSGSRD 35094
17-03-17 23:52:29.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:29.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:29.938 -07 000000415 INF: FPGA: Recv ZSGSRD 35093
17-03-17 23:52:29.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:29.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:29.948 -07 000000623 INF: FPGA: Recv ZSGSRD 35093
17-03-17 23:52:29.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:29.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:29.958 -07 000000541 INF: FPGA: Recv ZSGSRD 35085
17-03-17 23:52:29.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:29.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:29.968 -07 000000415 INF: FPGA: Recv ZSGSRD 35092
17-03-17 23:52:29.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:29.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:29.978 -07 000000448 INF: FPGA: Recv ZPIEZORD 30698
17-03-17 23:52:29.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:29.988 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.525 V. Piezo Error = -9.7 V.
17-03-17 23:52:29.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35092 (-164.9 uncal um), Error = 0.8 uncal um, Median = 35092 (-164.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35085 (-164.9 uncal um), Max = 35095 (-164.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:52:29.988 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35092, posNoise = 3, negNoise = 7
17-03-17 23:52:29.988 -07 000000610 INF: Z Motor: After move to -0.165745, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:29.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:52:29.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:29.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:29.988 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:29.988 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:29.988 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:52:29.988 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:29.988 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:52:29.988 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:52:29.988 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:52:29.988 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:52:29.988 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:52:29.988 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:52:29.998 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:52:29.998 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:52:29.998 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 23:52:29.998 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:52:30.008 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:52:30.008 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:52:30.008 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:52:30.008 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:52:30.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36383 150\n [Camera]
17-03-17 23:52:30.218 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:52:31.258 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:52:31.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:52:31.258 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:31.258 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:52:31.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:52:31.258 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:31.258 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:31.258 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:52:31.268 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:31.268 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:52:31.448 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36383 1422
17-03-17 23:52:31.598 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:52:31.658 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:52:31.658 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:52:31.658 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:31.658 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:52:31.658 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:52:31.658 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:31.668 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:52:31.668 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:52:31.668 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:52:31.668 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:52:32.098 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:52:32.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:52:32.098 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:32.098 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:52:32.098 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:32.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:52:32.098 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:52:32.098 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:32.098 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:32.098 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:52:32.108 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:52:32.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:52:32.288 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:52:32.288 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:52:32.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36383 150' command took 2 ms to send, 2264 ms to get response, and 2272 ms overall
17-03-17 23:52:32.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:52:32.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.16576180448981. ------
17-03-17 23:52:32.398 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:32.398 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17216 mm
17-03-17 23:52:32.398 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:52:32.408 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:52:32.408 -07 000000501 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 23:52:32.408 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 37608, sync = True, waitForSettling = False)
17-03-17 23:52:32.408 -07 000000448 INF: Z Motor: Moving to -0.172158 mm, started at -0.165762 mm, distance = -6.40 um
17-03-17 23:52:32.408 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:32.408 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:32.408 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 23:52:32.408 -07 000000502 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:52:32.418 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:52:32.418 -07 000000501 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:32.418 -07 000000501 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:52:32.418 -07 000000501 INF: Y Motor: Moving 1354 steps-34
17-03-17 23:52:32.418 -07 000000448 INF: FPGA: Xmit ZDACW 37608\n [Z Motor]
17-03-17 23:52:32.418 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:52:32.428 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:52:32.428 -07 000000448 INF: FPGA: 'ZDACW 37608' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:52:32.438 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:52:32.448 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:32.448 -07 000000502 INF: FPGA: Recv ZDACR 37608
17-03-17 23:52:32.458 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:52:32.458 -07 000000448 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 23:52:32.498 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:52:32.498 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:52:32.498 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:32.498 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:52:32.498 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:52:32.498 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:32.498 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:52:32.498 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:52:32.498 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:52:32.508 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:52:32.628 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:52:32.628 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-17 23:52:32.808 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 23:52:32.808 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:52:32.848 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:32.848 -07 000000541 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:52:32.858 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:52:32.858 -07 000000501 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:32.858 -07 000000501 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:52:32.858 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 23:52:33.798 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.001704,
17-03-17 23:52:33.808 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:33.808 -07 000000429 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:52:33.818 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:33.818 -07 000000501 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:33.838 -07 000000501 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:52:33.838 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:52:33.838 -07 000000501 INF: Y Motor: Moved to 74.0083 after 1428 ms (table move)
17-03-17 23:52:33.838 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172158 mm (DAC = 37608)
17-03-17 23:52:33.848 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:33.848 -07 000000475 INF: FPGA: Recv ZSGSRD 36084
17-03-17 23:52:33.858 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:52:33.858 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:33.858 -07 000000541 INF: FPGA: Recv ZSGSRD 36090
17-03-17 23:52:33.868 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:33.868 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:33.868 -07 000000501 INF: FPGA: Recv ZSGSRD 36090
17-03-17 23:52:33.878 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:33.878 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:33.878 -07 000000551 INF: FPGA: Recv ZSGSRD 36090
17-03-17 23:52:33.888 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:33.888 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:33.888 -07 000000475 INF: FPGA: Recv ZSGSRD 36091
17-03-17 23:52:33.898 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:33.898 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:33.898 -07 000000478 INF: FPGA: Recv ZSGSRD 36092
17-03-17 23:52:33.908 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:52:33.908 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:33.908 -07 000000459 INF: FPGA: Recv ZSGSRD 36094
17-03-17 23:52:33.918 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:33.918 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:33.918 -07 000000382 INF: FPGA: Recv ZSGSRD 36090
17-03-17 23:52:33.928 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:33.928 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:33.928 -07 000000478 INF: FPGA: Recv ZSGSRD 36084
17-03-17 23:52:33.938 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:33.938 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:33.938 -07 000000459 INF: FPGA: Recv ZSGSRD 36088
17-03-17 23:52:33.948 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:33.948 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:33.948 -07 000000382 INF: FPGA: Recv ZPIEZORD 32012
17-03-17 23:52:33.958 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:33.958 -07 000000623 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.739 V. Piezo Error = -9.0 V.
17-03-17 23:52:33.958 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36089 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36090 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36084 (-171.3 uncal um), Max = 36094 (-171.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:52:33.958 -07 000000623 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36089, posNoise = 5, negNoise = 5
17-03-17 23:52:33.958 -07 000000623 INF: Z Motor: After move to -0.172158, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:33.958 -07 000000623 INF: Z Motor: Settle wait time = 1431 ms, measure time = 116 ms (allowed 150 ms), total time = 1547 ms
17-03-17 23:52:33.958 -07 000000623 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-17 23:52:33.998 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 23:52:33.998 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:52:33.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:33.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:33.998 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:33.998 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:33.998 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:52:33.998 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:33.998 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:52:33.998 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:52:34.008 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:52:34.008 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:52:34.018 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:52:34.018 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:52:34.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:52:34.068 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 23:52:34.368 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-17 23:52:34.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-17 23:52:34.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:52:34.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:52:34.408 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:52:34.408 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 23:52:34.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-17 23:52:34.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:52:34.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:34.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:52:34.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:52:34.508 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:34.508 -07 000000551 INF: Autofocus start
17-03-17 23:52:34.508 -07 000000551 INF: MeasureProfile start
17-03-17 23:52:34.508 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:34.518 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:52:34.518 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:52:34.518 -07 000000551 INF: MeasureProfile done
17-03-17 23:52:34.518 -07 000000551 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:52:34.518 -07 000000551 INF: Autofocus finished
17-03-17 23:52:34.718 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:52:34.718 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:52:34.718 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.172166743995146. ----------
17-03-17 23:52:34.718 -07 000000610 INF: Cycle	79	Tile	18	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:52:34.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36105, sync = True, waitForSettling = True)
17-03-17 23:52:34.728 -07 000000610 INF: Z Motor: Moving to -0.165278 mm, started at -0.172167 mm, distance = 6.89 um
17-03-17 23:52:34.728 -07 000000610 INF: FPGA: Xmit ZDACW 36105\n [Z Motor]
17-03-17 23:52:34.728 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:52:34.738 -07 000000610 INF: FPGA: 'ZDACW 36105' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:52:34.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:34.738 -07 000000547 INF: FPGA: Recv ZDACR 36105
17-03-17 23:52:34.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:34.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:52:34.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:34.898 -07 000000502 INF: FPGA: Recv ZSGSRD 35020
17-03-17 23:52:34.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:34.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:34.908 -07 000000475 INF: FPGA: Recv ZSGSRD 35019
17-03-17 23:52:34.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:34.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:34.918 -07 000000478 INF: FPGA: Recv ZSGSRD 35025
17-03-17 23:52:34.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:34.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:34.928 -07 000000623 INF: FPGA: Recv ZSGSRD 35012
17-03-17 23:52:34.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:34.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:34.938 -07 000000415 INF: FPGA: Recv ZSGSRD 35020
17-03-17 23:52:34.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:34.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:34.948 -07 000000541 INF: FPGA: Recv ZSGSRD 35024
17-03-17 23:52:34.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:34.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:34.958 -07 000000502 INF: FPGA: Recv ZSGSRD 35011
17-03-17 23:52:34.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:34.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:34.968 -07 000000429 INF: FPGA: Recv ZSGSRD 35019
17-03-17 23:52:34.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:34.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:34.978 -07 000000459 INF: FPGA: Recv ZSGSRD 35016
17-03-17 23:52:34.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:34.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:34.988 -07 000000551 INF: FPGA: Recv ZSGSRD 35021
17-03-17 23:52:34.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:34.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:34.998 -07 000000541 INF: FPGA: Recv ZPIEZORD 30590
17-03-17 23:52:35.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:35.008 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.509 V. Piezo Error = -9.7 V.
17-03-17 23:52:35.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35019 (-164.4 uncal um), Error = 0.8 uncal um, Median = 35020 (-164.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35011 (-164.4 uncal um), Max = 35025 (-164.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:52:35.008 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35019, posNoise = 6, negNoise = 8
17-03-17 23:52:35.008 -07 000000610 INF: Z Motor: After move to -0.165278, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:35.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:52:35.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:35.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:35.008 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:35.008 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:35.008 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:52:35.008 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:35.008 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:52:35.008 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:52:35.008 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:52:35.008 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:52:35.008 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:52:35.008 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:52:35.018 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:52:35.018 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:52:35.018 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:52:35.018 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:52:35.028 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:52:35.028 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:52:35.028 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:52:35.028 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:52:35.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36281 150\n [Camera]
17-03-17 23:52:35.228 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:52:36.268 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:52:36.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:52:36.268 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:36.268 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:52:36.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:52:36.278 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:36.278 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:36.278 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:52:36.278 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:36.278 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:52:36.468 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36281 1422
17-03-17 23:52:36.608 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:52:36.668 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 23:52:36.668 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 23:52:36.668 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:36.668 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 23:52:36.668 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:52:36.668 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:36.668 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:36.668 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:36.668 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:52:36.678 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:52:37.108 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:52:37.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:52:37.108 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:52:37.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:52:37.118 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:37.118 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:52:37.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:52:37.118 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:37.128 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:37.128 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:52:37.128 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:37.128 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:52:37.308 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:52:37.308 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:52:37.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36281 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:52:37.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:52:37.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.165292837003462. ------
17-03-17 23:52:37.308 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:37.308 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17134 mm
17-03-17 23:52:37.308 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:52:37.308 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37430, sync = True, waitForSettling = False)
17-03-17 23:52:37.308 -07 000000382 INF: Z Motor: Moving to -0.171344 mm, started at -0.165293 mm, distance = -6.05 um
17-03-17 23:52:37.318 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 23:52:37.318 -07 000000415 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 23:52:37.318 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:37.318 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 23:52:37.318 -07 000000382 INF: FPGA: Xmit ZDACW 37430\n [Z Motor]
17-03-17 23:52:37.318 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:52:37.328 -07 000000382 INF: FPGA: 'ZDACW 37430' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:37.328 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:37.328 -07 000000478 INF: FPGA: Recv ZDACR 37430
17-03-17 23:52:37.338 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:37.338 -07 000000382 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 23:52:37.338 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:37.338 -07 000000382 INF: FPGA: Recv YRDPOS 151570
17-03-17 23:52:37.348 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:52:37.348 -07 000000415 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:37.348 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:52:37.348 -07 000000415 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:52:37.348 -07 000000415 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:52:37.358 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:52:37.528 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:52:37.528 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:52:37.528 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:37.528 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:52:37.528 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:52:37.528 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:37.528 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:52:37.528 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:52:37.528 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 23:52:37.538 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 23:52:37.548 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:52:37.548 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 229 ms overall
17-03-17 23:52:37.728 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:52:37.728 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 384 ms overall
17-03-17 23:52:37.758 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:37.758 -07 000000475 INF: FPGA: Recv YRDPOS 153255
17-03-17 23:52:37.768 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:52:37.768 -07 000000415 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:37.768 -07 000000415 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 23:52:37.768 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.199 mm/sec
17-03-17 23:52:38.718 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:38.718 -07 000000448 INF: FPGA: Recv YRDPOS 153255
17-03-17 23:52:38.728 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:38.728 -07 000000415 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:38.738 -07 000000415 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:52:38.738 -07 000000415 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:52:38.738 -07 000000415 INF: Y Motor: Moved to 74.8315 after 1429 ms (table move)
17-03-17 23:52:38.748 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171344 mm (DAC = 37430)
17-03-17 23:52:38.748 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:38.748 -07 000000459 INF: FPGA: Recv ZSGSRD 35969
17-03-17 23:52:38.758 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:52:38.758 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:38.758 -07 000000415 INF: FPGA: Recv ZSGSRD 35962
17-03-17 23:52:38.768 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:38.768 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:38.768 -07 000000478 INF: FPGA: Recv ZSGSRD 35956
17-03-17 23:52:38.778 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:38.778 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:38.778 -07 000000382 INF: FPGA: Recv ZSGSRD 35963
17-03-17 23:52:38.788 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:38.788 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:38.788 -07 000000429 INF: FPGA: Recv ZSGSRD 35967
17-03-17 23:52:38.798 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:38.798 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:38.798 -07 000000382 INF: FPGA: Recv ZSGSRD 35969
17-03-17 23:52:38.808 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:38.808 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:38.808 -07 000000478 INF: FPGA: Recv ZSGSRD 35962
17-03-17 23:52:38.818 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:38.818 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:38.818 -07 000000415 INF: FPGA: Recv ZSGSRD 35965
17-03-17 23:52:38.828 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:38.828 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:38.828 -07 000000459 INF: FPGA: Recv ZSGSRD 35958
17-03-17 23:52:38.838 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:38.838 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:38.838 -07 000000478 INF: FPGA: Recv ZSGSRD 35960
17-03-17 23:52:38.848 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:38.858 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:38.858 -07 000000478 INF: FPGA: Recv ZPIEZORD 31880
17-03-17 23:52:38.868 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:52:38.868 -07 000000623 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.711 V. Piezo Error = -9.0 V.
17-03-17 23:52:38.868 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35963 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35962 (-170.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35956 (-170.4 uncal um), Max = 35969 (-170.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:52:38.868 -07 000000623 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35963, posNoise = 6, negNoise = 7
17-03-17 23:52:38.868 -07 000000623 INF: Z Motor: After move to -0.171344, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:38.868 -07 000000623 INF: Z Motor: Settle wait time = 1432 ms, measure time = 118 ms (allowed 150 ms), total time = 1550 ms
17-03-17 23:52:38.868 -07 000000623 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 23:52:38.908 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 23:52:38.908 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:52:38.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:38.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:38.908 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:38.908 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:38.908 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:52:38.908 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:38.908 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:52:38.908 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:52:38.918 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:52:38.918 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:52:38.918 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:52:38.918 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:52:38.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:52:38.968 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:52:39.168 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.004458,
17-03-17 23:52:39.268 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:52:39.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:52:39.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:52:39.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:52:39.308 -07 000000429 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:52:39.308 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 23:52:39.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-17 23:52:39.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 23:52:39.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:39.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:52:39.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 23:52:39.408 -07 000000429 INF: Autofocus start
17-03-17 23:52:39.408 -07 000000429 INF: MeasureProfile start
17-03-17 23:52:39.408 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:39.408 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:39.418 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:52:39.418 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:52:39.418 -07 000000429 INF: MeasureProfile done
17-03-17 23:52:39.418 -07 000000429 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:52:39.418 -07 000000429 INF: Autofocus finished
17-03-17 23:52:39.618 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:52:39.618 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 23:52:39.618 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.171357293265284. ----------
17-03-17 23:52:39.618 -07 000000610 INF: Cycle	79	Tile	19	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:52:39.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35927, sync = True, waitForSettling = True)
17-03-17 23:52:39.628 -07 000000610 INF: Z Motor: Moving to -0.164463 mm, started at -0.171357 mm, distance = 6.89 um
17-03-17 23:52:39.628 -07 000000610 INF: FPGA: Xmit ZDACW 35927\n [Z Motor]
17-03-17 23:52:39.628 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:52:39.638 -07 000000610 INF: FPGA: 'ZDACW 35927' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:39.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:39.638 -07 000000382 INF: FPGA: Recv ZDACR 35927
17-03-17 23:52:39.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:39.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:52:39.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:39.798 -07 000000415 INF: FPGA: Recv ZSGSRD 34896
17-03-17 23:52:39.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:39.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:39.808 -07 000000478 INF: FPGA: Recv ZSGSRD 34898
17-03-17 23:52:39.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:39.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:39.818 -07 000000623 INF: FPGA: Recv ZSGSRD 34885
17-03-17 23:52:39.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:39.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:39.828 -07 000000448 INF: FPGA: Recv ZSGSRD 34895
17-03-17 23:52:39.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:39.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:39.838 -07 000000429 INF: FPGA: Recv ZSGSRD 34888
17-03-17 23:52:39.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:39.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:39.848 -07 000000415 INF: FPGA: Recv ZSGSRD 34896
17-03-17 23:52:39.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:39.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:39.858 -07 000000459 INF: FPGA: Recv ZSGSRD 34888
17-03-17 23:52:39.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:39.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:39.868 -07 000000475 INF: FPGA: Recv ZSGSRD 34888
17-03-17 23:52:39.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:39.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:39.878 -07 000000429 INF: FPGA: Recv ZSGSRD 34897
17-03-17 23:52:39.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:39.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:39.898 -07 000000623 INF: FPGA: Recv ZSGSRD 34893
17-03-17 23:52:39.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:52:39.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:39.908 -07 000000623 INF: FPGA: Recv ZPIEZORD 30454
17-03-17 23:52:39.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:39.918 -07 000000610 INF: Z Motor: Piezo is near 45.1 V (nominally 0 to 100 V), expect near 54.8 V, since DAC is at 5.482 V. Piezo Error = -9.8 V.
17-03-17 23:52:39.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.5 um, Read 10 ADC samples: Avg = 34892 (-163.6 uncal um), Error = 0.8 uncal um, Median = 34894 (-163.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 34885 (-163.6 uncal um), Max = 34898 (-163.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:52:39.918 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34892, posNoise = 6, negNoise = 7
17-03-17 23:52:39.918 -07 000000610 INF: Z Motor: After move to -0.164463, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:39.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-17 23:52:39.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:39.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:39.918 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:52:39.918 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:39.918 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:39.918 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:39.918 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:52:39.918 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:52:39.918 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:52:39.918 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:52:39.928 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:52:39.928 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:52:39.928 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:52:39.928 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:52:39.928 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:52:39.928 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:52:39.948 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:52:39.948 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:52:39.948 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:52:39.948 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:52:39.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36104 150\n [Camera]
17-03-17 23:52:40.148 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:52:41.188 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:52:41.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:52:41.188 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:41.188 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:41.188 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:52:41.188 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:52:41.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:52:41.188 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:41.188 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:41.188 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:52:41.378 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36104 1422
17-03-17 23:52:41.528 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:52:41.588 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:52:41.588 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:52:41.588 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:41.588 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:41.588 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:52:41.588 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:52:41.588 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:52:41.588 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:41.588 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:41.598 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:52:42.028 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:52:42.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:52:42.028 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:42.028 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:42.028 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:52:42.028 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:52:42.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:52:42.028 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:42.028 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:42.028 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:52:42.108 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:52:42.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:52:42.218 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:52:42.218 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:52:42.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36104 150' command took 2 ms to send, 2265 ms to get response, and 2272 ms overall
17-03-17 23:52:42.438 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:52:42.438 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:52:42.438 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:42.438 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 23:52:42.438 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:52:42.438 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:42.438 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:42.438 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:52:42.438 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 23:52:42.438 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 23:52:42.448 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:52:42.488 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 23:52:42.488 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 23:52:42.528 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 23:52:42.528 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 23:52:42.528 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:52:42.528 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-17 23:52:42.538 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:52:42.538 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 23:52:43.038 -07 000000623 INF: FPGA: Recv EMIN
17-03-17 23:52:43.038 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-17 23:52:43.038 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 23:52:43.038 -07 000000459 INF: FPGA: Recv EMCUR 
17-03-17 23:52:43.048 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:52:43.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:52:43.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.164476962061458. ------
17-03-17 23:52:43.048 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13954 mm
17-03-17 23:52:43.048 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:52:43.048 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:43.058 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30483, sync = True, waitForSettling = False)
17-03-17 23:52:43.058 -07 000000551 INF: Z Motor: Moving to -0.139542 mm, started at -0.164477 mm, distance = 24.93 um
17-03-17 23:52:43.058 -07 000000551 INF: FPGA: Xmit ZDACW 30483\n [Z Motor]
17-03-17 23:52:43.058 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:52:43.058 -07 000000478 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 23:52:43.058 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:43.058 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 5 ms to get response, and 9 ms overall
17-03-17 23:52:43.058 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:52:43.068 -07 000000551 INF: FPGA: 'ZDACW 30483' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:52:43.068 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:52:43.078 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:43.078 -07 000000459 INF: FPGA: Recv YRDPOS 153257
17-03-17 23:52:43.088 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:43.088 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:52:43.088 -07 000000478 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:43.088 -07 000000475 INF: FPGA: Recv ZDACR 30483
17-03-17 23:52:43.088 -07 000000478 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 23:52:43.088 -07 000000478 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:52:43.098 -07 000000478 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:52:43.098 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:52:43.098 -07 000000551 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 23:52:43.268 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:52:43.268 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 208 ms overall
17-03-17 23:52:44.528 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.033041,
17-03-17 23:52:44.718 -07 000000382 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 23:52:44.718 -07 000000478 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1632 ms overall
17-03-17 23:52:44.718 -07 000000478 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:52:44.718 -07 000000478 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23904 steps (14.940 mm). Slippage = 0.020 mm (0.00%).
17-03-17 23:52:44.718 -07 000000478 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1632 ms, distance = 14.919 mm, average velocity = 9.142 mm/sec
17-03-17 23:52:47.108 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:52:47.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:52:47.568 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:47.568 -07 000000501 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:52:47.578 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:47.578 -07 000000478 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:47.608 -07 000000478 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:52:47.608 -07 000000478 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 23:52:47.608 -07 000000478 INF: Y Motor: Moved to 59.9111 after 4550 ms
17-03-17 23:52:47.608 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139542 mm (DAC = 30483)
17-03-17 23:52:47.608 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:47.618 -07 000000502 INF: FPGA: Recv ZSGSRD 31014
17-03-17 23:52:47.618 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:52:47.618 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:47.618 -07 000000501 INF: FPGA: Recv ZSGSRD 31015
17-03-17 23:52:47.628 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:52:47.628 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:47.628 -07 000000502 INF: FPGA: Recv ZSGSRD 31008
17-03-17 23:52:47.638 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:47.638 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:47.638 -07 000000501 INF: FPGA: Recv ZSGSRD 31012
17-03-17 23:52:47.648 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:47.648 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:47.648 -07 000000502 INF: FPGA: Recv ZSGSRD 31008
17-03-17 23:52:47.658 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:47.658 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:47.658 -07 000000478 INF: FPGA: Recv ZSGSRD 31011
17-03-17 23:52:47.668 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:47.668 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:47.668 -07 000000502 INF: FPGA: Recv ZSGSRD 31014
17-03-17 23:52:47.678 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:47.678 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:47.678 -07 000000501 INF: FPGA: Recv ZSGSRD 31011
17-03-17 23:52:47.688 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:47.688 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:47.688 -07 000000502 INF: FPGA: Recv ZSGSRD 31011
17-03-17 23:52:47.698 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:47.698 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:47.698 -07 000000478 INF: FPGA: Recv ZSGSRD 31012
17-03-17 23:52:47.708 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:47.708 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:47.708 -07 000000502 INF: FPGA: Recv ZPIEZORD 26388
17-03-17 23:52:47.718 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:47.718 -07 000000462 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.651 V. Piezo Error = -10.1 V.
17-03-17 23:52:47.718 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31012 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31012 (-138.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 31008 (-138.7 uncal um), Max = 31015 (-138.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:52:47.718 -07 000000462 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31012, posNoise = 3, negNoise = 4
17-03-17 23:52:47.718 -07 000000462 INF: Z Motor: After move to -0.139542, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:47.718 -07 000000462 INF: Z Motor: Settle wait time = 4555 ms, measure time = 103 ms (allowed 150 ms), total time = 4658 ms
17-03-17 23:52:47.718 -07 000000462 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 23:52:47.768 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4713 ms
17-03-17 23:52:47.768 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:52:47.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:47.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:47.768 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:47.768 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:52:47.768 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:47.768 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:47.768 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:52:47.778 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:52:47.798 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 23:52:47.798 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:52:47.798 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:52:47.798 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:52:47.818 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:52:47.818 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 23:52:47.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:52:47.858 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:52:48.158 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:52:48.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:52:48.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:52:48.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:52:48.198 -07 000000623 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:52:48.198 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:52:48.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-17 23:52:48.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:52:48.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:48.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:52:48.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:52:48.398 -07 000000551 INF: Image SNR check: start
17-03-17 23:52:48.398 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:48.398 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:48.408 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:52:48.408 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:52:48.418 -07 000000551 INF: Image SNR check: pass  [peak (Max-Min)=173.52]
17-03-17 23:52:48.418 -07 000000551 INF: Autofocus start
17-03-17 23:52:48.418 -07 000000551 INF: MeasureProfile start
17-03-17 23:52:48.428 -07 000000551 INF: MeasureProfile done
17-03-17 23:52:48.428 -07 000000551 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 23:52:48.428 -07 000000551 INF: Autofocus finished
17-03-17 23:52:48.608 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:52:48.608 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:52:48.608 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139551018951426. ----------
17-03-17 23:52:48.608 -07 000000610 INF: Cycle	79	Tile	1	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:52:48.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28961, sync = True, waitForSettling = True)
17-03-17 23:52:48.618 -07 000000610 INF: Z Motor: Moving to -0.132575 mm, started at -0.139551 mm, distance = 6.98 um
17-03-17 23:52:48.618 -07 000000610 INF: FPGA: Xmit ZDACW 28961\n [Z Motor]
17-03-17 23:52:48.618 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:52:48.628 -07 000000610 INF: FPGA: 'ZDACW 28961' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:52:48.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:48.628 -07 000000462 INF: FPGA: Recv ZDACR 28961
17-03-17 23:52:48.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:48.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:52:48.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:48.788 -07 000000502 INF: FPGA: Recv ZSGSRD 29925
17-03-17 23:52:48.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:48.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:48.798 -07 000000551 INF: FPGA: Recv ZSGSRD 29927
17-03-17 23:52:48.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:48.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:48.808 -07 000000502 INF: FPGA: Recv ZSGSRD 29928
17-03-17 23:52:48.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:48.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:48.818 -07 000000623 INF: FPGA: Recv ZSGSRD 29922
17-03-17 23:52:48.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:48.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:48.828 -07 000000502 INF: FPGA: Recv ZSGSRD 29927
17-03-17 23:52:48.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:48.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:48.838 -07 000000623 INF: FPGA: Recv ZSGSRD 29927
17-03-17 23:52:48.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:48.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:48.848 -07 000000502 INF: FPGA: Recv ZSGSRD 29928
17-03-17 23:52:48.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:48.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:48.858 -07 000000623 INF: FPGA: Recv ZSGSRD 29927
17-03-17 23:52:48.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:48.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:48.868 -07 000000502 INF: FPGA: Recv ZSGSRD 29930
17-03-17 23:52:48.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:48.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:48.878 -07 000000478 INF: FPGA: Recv ZSGSRD 29934
17-03-17 23:52:48.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:48.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:48.888 -07 000000502 INF: FPGA: Recv ZPIEZORD 25237
17-03-17 23:52:48.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:48.898 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -10.3 V.
17-03-17 23:52:48.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29928 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29927 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29922 (-131.8 uncal um), Max = 29934 (-131.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:52:48.898 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29928, posNoise = 6, negNoise = 6
17-03-17 23:52:48.898 -07 000000610 INF: Z Motor: After move to -0.132575, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:48.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:52:48.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:48.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:48.898 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:48.898 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:48.898 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:52:48.898 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:48.898 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:52:48.898 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:52:48.898 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:52:48.898 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:52:48.898 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:52:48.898 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:52:48.908 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:52:48.908 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:52:48.908 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:52:48.908 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:52:48.918 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 23:52:48.918 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:52:48.928 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:52:48.928 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:52:48.928 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:52:48.928 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 23:52:48.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 29138 150\n [Camera]
17-03-17 23:52:49.138 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:52:49.888 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.0344,
17-03-17 23:52:50.168 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:52:50.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:52:50.178 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:50.178 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:52:50.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:52:50.178 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:50.178 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:50.178 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:52:50.178 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:50.178 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:52:50.368 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29138 1422
17-03-17 23:52:50.518 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:52:50.578 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:52:50.578 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:52:50.578 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:50.578 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:52:50.578 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:50.578 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:52:50.578 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:52:50.578 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:50.578 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:50.588 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:52:51.018 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:52:51.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:52:51.018 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:51.018 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:52:51.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:52:51.018 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:51.018 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:52:51.018 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:51.018 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:51.018 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:52:51.208 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:52:51.208 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:52:51.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 29138 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall
17-03-17 23:52:51.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:52:51.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.132587172989757. ------
17-03-17 23:52:51.318 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:51.318 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13864 mm
17-03-17 23:52:51.318 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:52:51.328 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:51.328 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:52:51.328 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:52:51.328 -07 000000547 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 23:52:51.328 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:52:51.328 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30285, sync = True, waitForSettling = False)
17-03-17 23:52:51.328 -07 000000551 INF: Z Motor: Moving to -0.138636 mm, started at -0.132587 mm, distance = -6.05 um
17-03-17 23:52:51.338 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:51.338 -07 000000382 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:52:51.348 -07 000000551 INF: FPGA: Xmit ZDACW 30285\n [Z Motor]
17-03-17 23:52:51.348 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:52:51.348 -07 000000547 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:51.348 -07 000000547 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:52:51.348 -07 000000547 INF: Y Motor: Moving 1330 steps2
17-03-17 23:52:51.348 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:52:51.358 -07 000000551 INF: FPGA: 'ZDACW 30285' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:52:51.358 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:51.358 -07 000000448 INF: FPGA: Recv ZDACR 30285
17-03-17 23:52:51.368 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:52:51.368 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:51.368 -07 000000551 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 23:52:51.398 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:52:51.398 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:52:51.398 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:51.408 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:51.408 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:52:51.408 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:52:51.408 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:51.408 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:51.408 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:52:51.408 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:52:51.528 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:52:51.528 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-17 23:52:51.748 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 23:52:51.748 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 23:52:51.778 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:51.778 -07 000000623 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:52:51.788 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:52:51.788 -07 000000547 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:51.788 -07 000000547 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:52:51.788 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.831 mm, average velocity = 2.079 mm/sec
17-03-17 23:52:52.108 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:52:52.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:52:52.738 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:52.738 -07 000000623 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:52:52.748 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:52.748 -07 000000547 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:52.768 -07 000000547 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:52:52.768 -07 000000547 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:52:52.768 -07 000000547 INF: Y Motor: Moved to 60.7329 after 1445 ms (table move)
17-03-17 23:52:52.778 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138636 mm (DAC = 30285)
17-03-17 23:52:52.778 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:52.778 -07 000000429 INF: FPGA: Recv ZSGSRD 30876
17-03-17 23:52:52.788 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:52:52.788 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:52.788 -07 000000502 INF: FPGA: Recv ZSGSRD 30874
17-03-17 23:52:52.798 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:52.798 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:52.798 -07 000000502 INF: FPGA: Recv ZSGSRD 30865
17-03-17 23:52:52.808 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:52.808 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:52.808 -07 000000502 INF: FPGA: Recv ZSGSRD 30868
17-03-17 23:52:52.818 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:52.818 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:52.818 -07 000000502 INF: FPGA: Recv ZSGSRD 30872
17-03-17 23:52:52.828 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:52.828 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:52.828 -07 000000448 INF: FPGA: Recv ZSGSRD 30868
17-03-17 23:52:52.838 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:52.838 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:52.838 -07 000000429 INF: FPGA: Recv ZSGSRD 30880
17-03-17 23:52:52.848 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:52.848 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:52.848 -07 000000502 INF: FPGA: Recv ZSGSRD 30874
17-03-17 23:52:52.858 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:52.858 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:52.858 -07 000000448 INF: FPGA: Recv ZSGSRD 30872
17-03-17 23:52:52.868 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:52.868 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:52.868 -07 000000382 INF: FPGA: Recv ZSGSRD 30868
17-03-17 23:52:52.878 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:52.878 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:52.878 -07 000000623 INF: FPGA: Recv ZPIEZORD 26542
17-03-17 23:52:52.888 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:52.888 -07 000000501 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -9.5 V.
17-03-17 23:52:52.888 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30872 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30872 (-137.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30865 (-137.8 uncal um), Max = 30880 (-137.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:52:52.888 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30872, posNoise = 8, negNoise = 7
17-03-17 23:52:52.888 -07 000000501 INF: Z Motor: After move to -0.138636, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:52.888 -07 000000501 INF: Z Motor: Settle wait time = 1447 ms, measure time = 109 ms (allowed 150 ms), total time = 1556 ms
17-03-17 23:52:52.888 -07 000000501 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:52:52.938 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 23:52:52.938 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:52:52.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:52.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:52.938 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:52.938 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:52.938 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:52:52.938 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:52.938 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:52:52.938 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:52:52.948 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:52:52.948 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:52:52.958 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:52:52.958 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:52:52.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:52:53.008 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:52:53.308 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:52:53.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:52:53.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:52:53.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:52:53.338 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:52:53.348 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 23:52:53.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-17 23:52:53.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 23:52:53.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:53.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:52:53.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:52:53.448 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:53.448 -07 000000429 INF: Autofocus start
17-03-17 23:52:53.448 -07 000000429 INF: MeasureProfile start
17-03-17 23:52:53.448 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:53.458 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:52:53.458 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:52:53.458 -07 000000429 INF: MeasureProfile done
17-03-17 23:52:53.458 -07 000000429 INF: X=48  Z correction [um]=0.2069503
17-03-17 23:52:53.458 -07 000000429 INF: Autofocus finished
17-03-17 23:52:53.658 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:52:53.658 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:52:53.658 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.138651629251579. ----------
17-03-17 23:52:53.668 -07 000000610 INF: Cycle	79	Tile	2	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:52:53.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28843, sync = True, waitForSettling = True)
17-03-17 23:52:53.668 -07 000000610 INF: Z Motor: Moving to -0.132035 mm, started at -0.138652 mm, distance = 6.62 um
17-03-17 23:52:53.668 -07 000000610 INF: FPGA: Xmit ZDACW 28843\n [Z Motor]
17-03-17 23:52:53.668 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:52:53.678 -07 000000610 INF: FPGA: 'ZDACW 28843' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:52:53.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:53.678 -07 000000415 INF: FPGA: Recv ZDACR 28843
17-03-17 23:52:53.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:53.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:52:53.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:53.838 -07 000000429 INF: FPGA: Recv ZSGSRD 29837
17-03-17 23:52:53.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:53.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:53.848 -07 000000501 INF: FPGA: Recv ZSGSRD 29845
17-03-17 23:52:53.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:53.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:53.858 -07 000000448 INF: FPGA: Recv ZSGSRD 29843
17-03-17 23:52:53.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:53.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:53.868 -07 000000415 INF: FPGA: Recv ZSGSRD 29844
17-03-17 23:52:53.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:53.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:53.878 -07 000000429 INF: FPGA: Recv ZSGSRD 29842
17-03-17 23:52:53.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:53.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:53.888 -07 000000415 INF: FPGA: Recv ZSGSRD 29840
17-03-17 23:52:53.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:53.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:53.898 -07 000000623 INF: FPGA: Recv ZSGSRD 29845
17-03-17 23:52:53.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:53.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:53.908 -07 000000382 INF: FPGA: Recv ZSGSRD 29846
17-03-17 23:52:53.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:53.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:53.918 -07 000000502 INF: FPGA: Recv ZSGSRD 29840
17-03-17 23:52:53.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:53.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:53.928 -07 000000501 INF: FPGA: Recv ZSGSRD 29843
17-03-17 23:52:53.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:53.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:53.938 -07 000000502 INF: FPGA: Recv ZPIEZORD 25196
17-03-17 23:52:53.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:53.948 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -10.2 V.
17-03-17 23:52:53.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29842 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29843 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29837 (-131.2 uncal um), Max = 29846 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:52:53.948 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29842, posNoise = 4, negNoise = 5
17-03-17 23:52:53.948 -07 000000610 INF: Z Motor: After move to -0.132035, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:53.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:52:53.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:53.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:53.948 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:53.948 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:52:53.948 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:53.948 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:53.948 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:52:53.948 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:52:53.948 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:52:53.948 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:52:53.948 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:52:53.948 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:52:53.958 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:52:53.958 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:52:53.958 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:52:53.958 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:52:53.968 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:52:53.968 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:52:53.968 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:52:53.968 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:52:53.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 29020 150\n [Camera]
17-03-17 23:52:54.168 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:52:55.208 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:52:55.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:52:55.208 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:55.208 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:52:55.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:52:55.218 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:55.218 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:55.218 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:52:55.218 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:55.218 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:52:55.248 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.030322,
17-03-17 23:52:55.398 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29020 1422
17-03-17 23:52:55.548 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:52:55.608 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:52:55.608 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:52:55.608 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:55.608 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:52:55.608 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:52:55.608 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:55.608 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:55.608 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:52:55.618 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:52:55.618 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:52:56.048 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:52:56.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:52:56.058 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:52:56.058 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:52:56.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:52:56.058 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:52:56.068 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:52:56.068 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:52:56.068 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:52:56.068 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:52:56.248 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:52:56.248 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:52:56.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 29020 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:52:56.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:52:56.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132034690745565. ------
17-03-17 23:52:56.248 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:56.248 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13872 mm
17-03-17 23:52:56.248 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:52:56.258 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:52:56.258 -07 000000501 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 23:52:56.258 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:56.258 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30304, sync = True, waitForSettling = False)
17-03-17 23:52:56.258 -07 000000623 INF: Z Motor: Moving to -0.138723 mm, started at -0.132035 mm, distance = -6.69 um
17-03-17 23:52:56.258 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:56.258 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:52:56.258 -07 000000541 INF: FPGA: Recv YRDPOS 124382
17-03-17 23:52:56.268 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:56.268 -07 000000501 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:56.268 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:52:56.268 -07 000000501 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:52:56.268 -07 000000501 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:52:56.278 -07 000000623 INF: FPGA: Xmit ZDACW 30304\n [Z Motor]
17-03-17 23:52:56.278 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:52:56.288 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:52:56.288 -07 000000623 INF: FPGA: 'ZDACW 30304' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:52:56.308 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:56.308 -07 000000475 INF: FPGA: Recv ZDACR 30304
17-03-17 23:52:56.318 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:52:56.318 -07 000000623 INF: Z Motor: MoveAbsStepped took 59 ms (did NOT wait for settling yet))
17-03-17 23:52:56.458 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:52:56.458 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:52:56.458 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:56.458 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:52:56.458 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:52:56.458 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:56.468 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:52:56.468 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 23:52:56.468 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:52:56.468 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 23:52:56.468 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:52:56.478 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 23:52:56.658 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 23:52:56.658 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 23:52:56.708 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:56.708 -07 000000459 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:52:56.718 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:56.718 -07 000000501 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:56.718 -07 000000501 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:52:56.718 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.137 mm/sec
17-03-17 23:52:57.108 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:52:57.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:52:57.668 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:52:57.668 -07 000000541 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:52:57.678 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:52:57.678 -07 000000501 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:52:57.698 -07 000000501 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:52:57.698 -07 000000501 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:52:57.698 -07 000000501 INF: Y Motor: Moved to 61.5640 after 1447 ms (table move)
17-03-17 23:52:57.708 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138723 mm (DAC = 30304)
17-03-17 23:52:57.708 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:57.708 -07 000000561 INF: FPGA: Recv ZSGSRD 30887
17-03-17 23:52:57.718 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:52:57.718 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:57.718 -07 000000478 INF: FPGA: Recv ZSGSRD 30885
17-03-17 23:52:57.728 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:57.728 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:57.728 -07 000000551 INF: FPGA: Recv ZSGSRD 30889
17-03-17 23:52:57.738 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:57.738 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:57.738 -07 000000618 INF: FPGA: Recv ZSGSRD 30891
17-03-17 23:52:57.748 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:57.748 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:57.748 -07 000000415 INF: FPGA: Recv ZSGSRD 30889
17-03-17 23:52:57.758 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:57.758 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:57.758 -07 000000429 INF: FPGA: Recv ZSGSRD 30877
17-03-17 23:52:57.768 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:57.768 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:57.768 -07 000000462 INF: FPGA: Recv ZSGSRD 30885
17-03-17 23:52:57.778 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:57.778 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:57.778 -07 000000482 INF: FPGA: Recv ZSGSRD 30882
17-03-17 23:52:57.788 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:57.788 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:57.788 -07 000000478 INF: FPGA: Recv ZSGSRD 30874
17-03-17 23:52:57.798 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:57.798 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:57.798 -07 000000502 INF: FPGA: Recv ZSGSRD 30888
17-03-17 23:52:57.808 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:57.808 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:57.808 -07 000000429 INF: FPGA: Recv ZPIEZORD 26663
17-03-17 23:52:57.818 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:57.818 -07 000000448 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.624 V. Piezo Error = -9.3 V.
17-03-17 23:52:57.818 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30885 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30886 (-137.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30874 (-137.9 uncal um), Max = 30891 (-138.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 23:52:57.818 -07 000000448 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30885, posNoise = 6, negNoise = 11
17-03-17 23:52:57.818 -07 000000448 INF: Z Motor: After move to -0.138723, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:57.818 -07 000000448 INF: Z Motor: Settle wait time = 1451 ms, measure time = 109 ms (allowed 150 ms), total time = 1560 ms
17-03-17 23:52:57.818 -07 000000448 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:52:57.868 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-17 23:52:57.868 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:52:57.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:57.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:57.868 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:57.868 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:57.868 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:52:57.868 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:57.868 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:52:57.878 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:52:57.878 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:52:57.878 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:52:57.878 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:52:57.878 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:52:57.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:52:57.928 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:52:58.228 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:52:58.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:52:58.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:52:58.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:52:58.268 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:52:58.268 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 23:52:58.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-17 23:52:58.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:52:58.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:52:58.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:52:58.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:52:58.468 -07 000000409 INF: Autofocus start
17-03-17 23:52:58.468 -07 000000409 INF: MeasureProfile start
17-03-17 23:52:58.468 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:52:58.478 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:52:58.478 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:52:58.478 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:52:58.478 -07 000000409 INF: MeasureProfile done
17-03-17 23:52:58.478 -07 000000409 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 23:52:58.478 -07 000000409 INF: Autofocus finished
17-03-17 23:52:58.678 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:52:58.678 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:52:58.678 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.138735144009422. ----------
17-03-17 23:52:58.678 -07 000000610 INF: Cycle	79	Tile	3	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:52:58.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28781, sync = True, waitForSettling = True)
17-03-17 23:52:58.688 -07 000000610 INF: Z Motor: Moving to -0.131751 mm, started at -0.138735 mm, distance = 6.98 um
17-03-17 23:52:58.688 -07 000000610 INF: FPGA: Xmit ZDACW 28781\n [Z Motor]
17-03-17 23:52:58.688 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:52:58.698 -07 000000610 INF: FPGA: 'ZDACW 28781' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:52:58.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:52:58.698 -07 000000501 INF: FPGA: Recv ZDACR 28781
17-03-17 23:52:58.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:58.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:52:58.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:58.858 -07 000000561 INF: FPGA: Recv ZSGSRD 29797
17-03-17 23:52:58.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:58.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:58.868 -07 000000502 INF: FPGA: Recv ZSGSRD 29803
17-03-17 23:52:58.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:58.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:58.878 -07 000000382 INF: FPGA: Recv ZSGSRD 29794
17-03-17 23:52:58.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:58.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:58.888 -07 000000561 INF: FPGA: Recv ZSGSRD 29798
17-03-17 23:52:58.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:58.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:58.898 -07 000000501 INF: FPGA: Recv ZSGSRD 29802
17-03-17 23:52:58.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:58.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:58.908 -07 000000409 INF: FPGA: Recv ZSGSRD 29795
17-03-17 23:52:58.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:58.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:58.918 -07 000000501 INF: FPGA: Recv ZSGSRD 29801
17-03-17 23:52:58.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:58.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:58.928 -07 000000409 INF: FPGA: Recv ZSGSRD 29795
17-03-17 23:52:58.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:58.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:58.938 -07 000000502 INF: FPGA: Recv ZSGSRD 29797
17-03-17 23:52:58.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:58.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:52:58.948 -07 000000501 INF: FPGA: Recv ZSGSRD 29798
17-03-17 23:52:58.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:58.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:52:58.958 -07 000000502 INF: FPGA: Recv ZPIEZORD 25183
17-03-17 23:52:58.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:52:58.968 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -10.1 V.
17-03-17 23:52:58.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29798 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29798 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29794 (-130.9 uncal um), Max = 29803 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:52:58.968 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29798, posNoise = 5, negNoise = 4
17-03-17 23:52:58.968 -07 000000610 INF: Z Motor: After move to -0.131751, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:52:58.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:52:58.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:52:58.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:52:58.968 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:52:58.968 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:52:58.968 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:52:58.968 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:52:58.968 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:52:58.968 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:52:58.968 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:52:58.968 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:52:58.968 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:52:58.968 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:52:58.978 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:52:58.978 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:52:58.978 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:52:58.978 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:52:58.988 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:52:58.988 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:52:58.988 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:52:58.988 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:52:58.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28958 150\n [Camera]
17-03-17 23:52:59.188 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:53:00.228 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:53:00.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:53:00.228 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:00.228 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:00.228 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:53:00.238 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:53:00.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:53:00.238 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:00.238 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:00.238 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:53:00.418 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28958 1422
17-03-17 23:53:00.578 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1575
17-03-17 23:53:00.608 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.007176,
17-03-17 23:53:00.618 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 23:53:00.618 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:53:00.618 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:00.628 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:00.628 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:53:00.628 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:53:00.628 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:00.628 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:00.628 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:53:00.628 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:53:01.078 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2075
17-03-17 23:53:01.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2075
17-03-17 23:53:01.078 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:01.078 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:01.078 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:53:01.078 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2075
17-03-17 23:53:01.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2075
17-03-17 23:53:01.078 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:01.078 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:01.078 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:53:01.268 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-17 23:53:01.268 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:53:01.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28958 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:53:01.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:53:01.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.131752025411328. ------
17-03-17 23:53:01.268 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:01.268 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13818 mm
17-03-17 23:53:01.268 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:53:01.408 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:01.408 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 138 ms overall
17-03-17 23:53:01.408 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:53:01.408 -07 000000382 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 23:53:01.408 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30186, sync = True, waitForSettling = False)
17-03-17 23:53:01.408 -07 000000551 INF: Z Motor: Moving to -0.138183 mm, started at -0.131752 mm, distance = -6.43 um
17-03-17 23:53:01.418 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:01.418 -07 000000502 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:53:01.428 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:53:01.428 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:53:01.428 -07 000000382 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:01.428 -07 000000382 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:53:01.428 -07 000000382 INF: Y Motor: Moving 1342 steps-18
17-03-17 23:53:01.438 -07 000000551 INF: FPGA: Xmit ZDACW 30186\n [Z Motor]
17-03-17 23:53:01.438 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:53:01.448 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:53:01.448 -07 000000551 INF: FPGA: 'ZDACW 30186' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 23:53:01.458 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:01.458 -07 000000502 INF: FPGA: Recv ZDACR 30186
17-03-17 23:53:01.468 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:53:01.468 -07 000000551 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 23:53:01.478 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:53:01.478 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:53:01.478 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:01.478 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:53:01.478 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:53:01.478 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:01.488 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:01.488 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:53:01.488 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:53:01.488 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:53:01.628 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:53:01.628 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 217 ms overall
17-03-17 23:53:01.818 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 23:53:01.818 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:53:01.858 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:01.868 -07 000000475 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:53:01.868 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:53:01.868 -07 000000382 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:01.868 -07 000000382 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 23:53:01.868 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-17 23:53:02.108 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:53:02.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:53:02.818 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:02.818 -07 000000475 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:53:02.828 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:02.828 -07 000000382 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:02.848 -07 000000382 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:53:02.848 -07 000000382 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:53:02.848 -07 000000382 INF: Y Motor: Moved to 62.3955 after 1439 ms (table move)
17-03-17 23:53:02.858 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138183 mm (DAC = 30186)
17-03-17 23:53:02.858 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:02.858 -07 000000415 INF: FPGA: Recv ZSGSRD 30799
17-03-17 23:53:02.868 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:02.868 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:02.868 -07 000000459 INF: FPGA: Recv ZSGSRD 30800
17-03-17 23:53:02.878 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:02.878 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:02.878 -07 000000561 INF: FPGA: Recv ZSGSRD 30807
17-03-17 23:53:02.888 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:02.888 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:02.888 -07 000000475 INF: FPGA: Recv ZSGSRD 30804
17-03-17 23:53:02.898 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:02.898 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:02.898 -07 000000541 INF: FPGA: Recv ZSGSRD 30801
17-03-17 23:53:02.908 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:02.908 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:02.908 -07 000000459 INF: FPGA: Recv ZSGSRD 30798
17-03-17 23:53:02.918 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:02.918 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:02.918 -07 000000482 INF: FPGA: Recv ZSGSRD 30798
17-03-17 23:53:02.928 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:02.928 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:02.928 -07 000000475 INF: FPGA: Recv ZSGSRD 30802
17-03-17 23:53:02.938 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:02.938 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:02.938 -07 000000382 INF: FPGA: Recv ZSGSRD 30792
17-03-17 23:53:02.948 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:02.948 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:02.948 -07 000000459 INF: FPGA: Recv ZSGSRD 30805
17-03-17 23:53:02.958 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:02.958 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:02.958 -07 000000512 INF: FPGA: Recv ZPIEZORD 26558
17-03-17 23:53:02.968 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:02.968 -07 000000409 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.606 V. Piezo Error = -9.3 V.
17-03-17 23:53:02.968 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30801 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30800 (-137.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30792 (-137.3 uncal um), Max = 30807 (-137.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:53:02.968 -07 000000409 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30801, posNoise = 6, negNoise = 9
17-03-17 23:53:02.968 -07 000000409 INF: Z Motor: After move to -0.138183, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:02.968 -07 000000409 INF: Z Motor: Settle wait time = 1442 ms, measure time = 110 ms (allowed 150 ms), total time = 1552 ms
17-03-17 23:53:02.968 -07 000000409 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:53:03.008 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1733 ms
17-03-17 23:53:03.008 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:53:03.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:03.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:03.008 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:03.008 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:03.008 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:53:03.008 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:03.008 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:03.008 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:53:03.018 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:53:03.018 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:53:03.018 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:53:03.018 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:53:03.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:53:03.078 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:53:03.378 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:53:03.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:53:03.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:53:03.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:53:03.408 -07 000000409 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:53:03.408 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 23:53:03.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-17 23:53:03.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 23:53:03.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:03.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:53:03.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 23:53:03.508 -07 000000382 INF: Autofocus start
17-03-17 23:53:03.508 -07 000000382 INF: MeasureProfile start
17-03-17 23:53:03.508 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:03.508 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:03.518 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:53:03.518 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:53:03.518 -07 000000382 INF: MeasureProfile done
17-03-17 23:53:03.518 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:53:03.518 -07 000000382 INF: Autofocus finished
17-03-17 23:53:03.718 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:53:03.718 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 23:53:03.718 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138195510189514. ----------
17-03-17 23:53:03.718 -07 000000610 INF: Cycle	79	Tile	4	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:53:03.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28693, sync = True, waitForSettling = True)
17-03-17 23:53:03.728 -07 000000610 INF: Z Motor: Moving to -0.131348 mm, started at -0.138196 mm, distance = 6.85 um
17-03-17 23:53:03.728 -07 000000610 INF: FPGA: Xmit ZDACW 28693\n [Z Motor]
17-03-17 23:53:03.728 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 23:53:03.738 -07 000000610 INF: FPGA: 'ZDACW 28693' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:03.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:03.738 -07 000000448 INF: FPGA: Recv ZDACR 28693
17-03-17 23:53:03.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:03.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:53:03.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:03.898 -07 000000551 INF: FPGA: Recv ZSGSRD 29737
17-03-17 23:53:03.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:03.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:03.908 -07 000000501 INF: FPGA: Recv ZSGSRD 29735
17-03-17 23:53:03.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:03.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:03.918 -07 000000382 INF: FPGA: Recv ZSGSRD 29739
17-03-17 23:53:03.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:03.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:03.928 -07 000000547 INF: FPGA: Recv ZSGSRD 29728
17-03-17 23:53:03.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:03.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:03.938 -07 000000541 INF: FPGA: Recv ZSGSRD 29732
17-03-17 23:53:03.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:03.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:03.948 -07 000000501 INF: FPGA: Recv ZSGSRD 29736
17-03-17 23:53:03.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:03.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:03.958 -07 000000512 INF: FPGA: Recv ZSGSRD 29741
17-03-17 23:53:03.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:03.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:03.968 -07 000000459 INF: FPGA: Recv ZSGSRD 29740
17-03-17 23:53:03.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:03.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:03.978 -07 000000561 INF: FPGA: Recv ZSGSRD 29730
17-03-17 23:53:03.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:03.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:03.988 -07 000000551 INF: FPGA: Recv ZSGSRD 29734
17-03-17 23:53:03.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:03.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:03.998 -07 000000409 INF: FPGA: Recv ZPIEZORD 25151
17-03-17 23:53:04.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:04.008 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -10.1 V.
17-03-17 23:53:04.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29735 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29736 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29728 (-130.5 uncal um), Max = 29741 (-130.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:53:04.008 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29735, posNoise = 6, negNoise = 7
17-03-17 23:53:04.008 -07 000000610 INF: Z Motor: After move to -0.131348, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:04.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:53:04.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:04.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:04.008 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:04.008 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:53:04.008 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:53:04.008 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:53:04.008 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:04.008 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:04.008 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:53:04.008 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:53:04.008 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:04.008 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:53:04.008 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:53:04.008 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:53:04.018 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:53:04.018 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:53:04.028 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 23:53:04.028 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:53:04.028 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 23:53:04.028 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:53:04.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28870 150\n [Camera]
17-03-17 23:53:04.228 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:53:05.268 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1230
17-03-17 23:53:05.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1230
17-03-17 23:53:05.268 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:05.268 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1230
17-03-17 23:53:05.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1230
17-03-17 23:53:05.268 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:05.268 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:05.268 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:53:05.278 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:05.278 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:53:05.458 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28870 1422
17-03-17 23:53:05.608 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:53:05.668 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:53:05.668 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:53:05.668 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:05.668 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:05.668 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:53:05.668 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:53:05.668 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:53:05.668 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:05.678 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:05.678 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:53:05.968 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.99219,
17-03-17 23:53:06.108 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:53:06.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:53:06.108 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:06.108 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:53:06.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:53:06.108 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:06.108 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:53:06.108 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:06.108 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:06.108 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:53:06.298 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-17 23:53:06.298 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:53:06.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28870 150' command took 3 ms to send, 2267 ms to get response, and 2272 ms overall
17-03-17 23:53:06.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:53:06.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131347300046397. ------
17-03-17 23:53:06.418 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:06.418 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13804 mm
17-03-17 23:53:06.418 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:53:06.418 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:53:06.418 -07 000000623 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 23:53:06.418 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:06.418 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30155, sync = True, waitForSettling = False)
17-03-17 23:53:06.418 -07 000000478 INF: Z Motor: Moving to -0.138041 mm, started at -0.131347 mm, distance = -6.69 um
17-03-17 23:53:06.428 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:53:06.428 -07 000000478 INF: FPGA: Xmit ZDACW 30155\n [Z Motor]
17-03-17 23:53:06.428 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:53:06.438 -07 000000478 INF: FPGA: 'ZDACW 30155' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:06.438 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:06.438 -07 000000561 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:53:06.448 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:53:06.448 -07 000000623 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:06.448 -07 000000623 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:53:06.448 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:53:06.448 -07 000000623 INF: Y Motor: Moving 1339 steps-15
17-03-17 23:53:06.458 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:06.458 -07 000000429 INF: FPGA: Recv ZDACR 30155
17-03-17 23:53:06.468 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:53:06.468 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:53:06.468 -07 000000478 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:53:06.508 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:53:06.508 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:53:06.508 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:06.508 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:53:06.508 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:53:06.508 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:06.518 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:53:06.518 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:06.518 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:53:06.528 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:53:06.648 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:53:06.648 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 23:53:06.838 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 23:53:06.838 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:53:06.878 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:06.888 -07 000000429 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:53:06.898 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:06.898 -07 000000623 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:06.898 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:53:06.898 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-17 23:53:07.108 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:53:07.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:53:07.848 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:07.848 -07 000000502 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:53:07.858 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:07.858 -07 000000623 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:07.908 -07 000000623 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:53:07.908 -07 000000623 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:53:07.908 -07 000000623 INF: Y Motor: Moved to 63.2241 after 1484 ms (table move)
17-03-17 23:53:07.908 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138041 mm (DAC = 30155)
17-03-17 23:53:07.908 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:07.908 -07 000000462 INF: FPGA: Recv ZSGSRD 30775
17-03-17 23:53:07.918 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:53:07.918 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:07.918 -07 000000462 INF: FPGA: Recv ZSGSRD 30784
17-03-17 23:53:07.928 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:07.928 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:07.928 -07 000000459 INF: FPGA: Recv ZSGSRD 30776
17-03-17 23:53:07.938 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:07.938 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:07.938 -07 000000459 INF: FPGA: Recv ZSGSRD 30777
17-03-17 23:53:07.948 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:07.948 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:07.948 -07 000000551 INF: FPGA: Recv ZSGSRD 30779
17-03-17 23:53:07.958 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:07.958 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:07.958 -07 000000623 INF: FPGA: Recv ZSGSRD 30773
17-03-17 23:53:07.968 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:07.968 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:07.968 -07 000000561 INF: FPGA: Recv ZSGSRD 30779
17-03-17 23:53:07.978 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:07.978 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:07.978 -07 000000478 INF: FPGA: Recv ZSGSRD 30778
17-03-17 23:53:07.988 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:07.988 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:07.988 -07 000000501 INF: FPGA: Recv ZSGSRD 30783
17-03-17 23:53:07.998 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:07.998 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:07.998 -07 000000502 INF: FPGA: Recv ZSGSRD 30786
17-03-17 23:53:08.008 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:08.008 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:08.008 -07 000000561 INF: FPGA: Recv ZPIEZORD 26540
17-03-17 23:53:08.018 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:08.018 -07 000000409 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -9.3 V.
17-03-17 23:53:08.018 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30779 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30778 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30773 (-137.2 uncal um), Max = 30786 (-137.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:53:08.018 -07 000000409 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30779, posNoise = 7, negNoise = 6
17-03-17 23:53:08.018 -07 000000409 INF: Z Motor: After move to -0.138041, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:08.018 -07 000000409 INF: Z Motor: Settle wait time = 1487 ms, measure time = 104 ms (allowed 150 ms), total time = 1591 ms
17-03-17 23:53:08.018 -07 000000409 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 23:53:08.068 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1644 ms
17-03-17 23:53:08.068 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:53:08.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:08.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:08.068 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:08.068 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:08.068 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:53:08.068 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:08.068 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:53:08.068 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:53:08.078 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:53:08.078 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:53:08.078 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:53:08.078 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:53:08.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:53:08.128 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:53:08.428 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:53:08.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:53:08.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:53:08.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:53:08.468 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:53:08.468 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 23:53:08.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-17 23:53:08.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:53:08.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:08.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:53:08.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:53:08.668 -07 000000459 INF: Autofocus start
17-03-17 23:53:08.668 -07 000000459 INF: MeasureProfile start
17-03-17 23:53:08.668 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:08.668 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:08.678 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:53:08.678 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:53:08.678 -07 000000459 INF: MeasureProfile done
17-03-17 23:53:08.678 -07 000000459 INF: X=13  Z correction [um]=0.03858674
17-03-17 23:53:08.678 -07 000000459 INF: Autofocus finished
17-03-17 23:53:08.878 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:53:08.878 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:53:08.878 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138054177522395. ----------
17-03-17 23:53:08.878 -07 000000610 INF: Cycle	79	Tile	5	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:53:08.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28676, sync = True, waitForSettling = True)
17-03-17 23:53:08.878 -07 000000610 INF: Z Motor: Moving to -0.131270 mm, started at -0.138054 mm, distance = 6.78 um
17-03-17 23:53:08.888 -07 000000610 INF: FPGA: Xmit ZDACW 28676\n [Z Motor]
17-03-17 23:53:08.888 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:53:08.898 -07 000000610 INF: FPGA: 'ZDACW 28676' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:08.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:08.898 -07 000000501 INF: FPGA: Recv ZDACR 28676
17-03-17 23:53:08.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:08.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:53:09.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:09.058 -07 000000512 INF: FPGA: Recv ZSGSRD 29722
17-03-17 23:53:09.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:09.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:09.068 -07 000000547 INF: FPGA: Recv ZSGSRD 29723
17-03-17 23:53:09.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:09.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:09.078 -07 000000541 INF: FPGA: Recv ZSGSRD 29726
17-03-17 23:53:09.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:09.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:09.088 -07 000000382 INF: FPGA: Recv ZSGSRD 29721
17-03-17 23:53:09.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:09.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:09.098 -07 000000475 INF: FPGA: Recv ZSGSRD 29728
17-03-17 23:53:09.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:09.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:09.108 -07 000000429 INF: FPGA: Recv ZSGSRD 29723
17-03-17 23:53:09.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:09.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:09.118 -07 000000501 INF: FPGA: Recv ZSGSRD 29726
17-03-17 23:53:09.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:09.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:09.128 -07 000000561 INF: FPGA: Recv ZSGSRD 29728
17-03-17 23:53:09.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:09.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:09.138 -07 000000475 INF: FPGA: Recv ZSGSRD 29718
17-03-17 23:53:09.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:09.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:09.148 -07 000000415 INF: FPGA: Recv ZSGSRD 29727
17-03-17 23:53:09.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:09.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:09.158 -07 000000512 INF: FPGA: Recv ZPIEZORD 25141
17-03-17 23:53:09.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:09.168 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -10.0 V.
17-03-17 23:53:09.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29724 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29724 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29718 (-130.5 uncal um), Max = 29728 (-130.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:53:09.168 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29724, posNoise = 4, negNoise = 6
17-03-17 23:53:09.168 -07 000000610 INF: Z Motor: After move to -0.131270, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:09.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:53:09.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:09.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:09.168 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:09.168 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:09.168 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:53:09.168 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:09.168 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:53:09.168 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:53:09.168 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:53:09.168 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:53:09.168 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:53:09.168 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:53:09.178 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:53:09.178 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:53:09.178 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:53:09.178 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:53:09.188 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:53:09.188 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:53:09.188 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:53:09.188 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:53:09.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28852 150\n [Camera]
17-03-17 23:53:09.398 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:53:10.428 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:53:10.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:53:10.428 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:10.438 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:53:10.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:53:10.438 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:10.438 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:10.438 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:53:10.438 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:10.438 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:53:10.628 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28852 1422
17-03-17 23:53:10.778 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:53:10.828 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 23:53:10.828 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 23:53:10.828 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:10.828 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:10.828 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 23:53:10.828 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:53:10.828 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:10.838 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:10.838 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:53:10.838 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:53:11.278 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:53:11.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:53:11.278 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:11.278 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:53:11.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:53:11.278 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:11.288 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:11.288 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:53:11.288 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:11.288 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:53:11.328 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.974486,
17-03-17 23:53:11.468 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 2267
17-03-17 23:53:11.468 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:53:11.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28852 150' command took 2 ms to send, 2265 ms to get response, and 2274 ms overall
17-03-17 23:53:11.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:53:11.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131276633712838. ------
17-03-17 23:53:11.478 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:11.478 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13771 mm
17-03-17 23:53:11.478 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:53:11.478 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:53:11.478 -07 000000512 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 23:53:11.488 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:11.678 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 23:53:11.678 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:53:11.678 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:11.678 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 23:53:11.678 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:53:11.678 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:11.688 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:53:11.688 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:11.688 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:53:11.688 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:53:11.698 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:11.698 -07 000000623 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:53:11.698 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 201 ms to get response, and 217 ms overall
17-03-17 23:53:11.698 -07 000000512 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:11.698 -07 000000512 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:53:11.698 -07 000000512 INF: Y Motor: Moving 1342 steps-18
17-03-17 23:53:11.698 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 211 ms to get response, and 221 ms overall
17-03-17 23:53:11.698 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:53:11.698 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30084, sync = True, waitForSettling = False)
17-03-17 23:53:11.698 -07 000000623 INF: Z Motor: Moving to -0.137716 mm, started at -0.131277 mm, distance = -6.44 um
17-03-17 23:53:11.708 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:53:11.718 -07 000000623 INF: FPGA: Xmit ZDACW 30084\n [Z Motor]
17-03-17 23:53:11.718 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:53:11.728 -07 000000623 INF: FPGA: 'ZDACW 30084' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:53:11.728 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:11.728 -07 000000482 INF: FPGA: Recv ZDACR 30084
17-03-17 23:53:11.738 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:11.738 -07 000000623 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 23:53:11.908 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:53:11.908 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 23:53:12.078 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 23:53:12.078 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 373 ms to get response, and 380 ms overall
17-03-17 23:53:12.108 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:53:12.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:53:12.118 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:12.118 -07 000000482 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:53:12.128 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:53:12.128 -07 000000512 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:12.128 -07 000000512 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 23:53:12.128 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.838 mm, average velocity = 2.207 mm/sec
17-03-17 23:53:13.078 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:13.078 -07 000000382 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:53:13.088 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:13.088 -07 000000512 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:13.108 -07 000000512 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:53:13.108 -07 000000512 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:53:13.108 -07 000000512 INF: Y Motor: Moved to 64.0571 after 1630 ms (table move)
17-03-17 23:53:13.108 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137716 mm (DAC = 30084)
17-03-17 23:53:13.108 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:13.118 -07 000000618 INF: FPGA: Recv ZSGSRD 30723
17-03-17 23:53:13.118 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:53:13.118 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:13.118 -07 000000618 INF: FPGA: Recv ZSGSRD 30730
17-03-17 23:53:13.128 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:53:13.128 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:13.128 -07 000000475 INF: FPGA: Recv ZSGSRD 30727
17-03-17 23:53:13.138 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:13.138 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:13.138 -07 000000561 INF: FPGA: Recv ZSGSRD 30725
17-03-17 23:53:13.148 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:13.148 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:13.148 -07 000000561 INF: FPGA: Recv ZSGSRD 30720
17-03-17 23:53:13.158 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:13.158 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:13.158 -07 000000482 INF: FPGA: Recv ZSGSRD 30723
17-03-17 23:53:13.168 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:13.168 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:13.168 -07 000000482 INF: FPGA: Recv ZSGSRD 30728
17-03-17 23:53:13.178 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:13.178 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:13.178 -07 000000482 INF: FPGA: Recv ZSGSRD 30730
17-03-17 23:53:13.188 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:13.188 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:13.188 -07 000000475 INF: FPGA: Recv ZSGSRD 30734
17-03-17 23:53:13.198 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:13.198 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:13.198 -07 000000482 INF: FPGA: Recv ZSGSRD 30727
17-03-17 23:53:13.208 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:13.208 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:13.208 -07 000000475 INF: FPGA: Recv ZPIEZORD 26497
17-03-17 23:53:13.218 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:13.218 -07 000000462 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.591 V. Piezo Error = -9.3 V.
17-03-17 23:53:13.218 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30727 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30727 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30720 (-136.9 uncal um), Max = 30734 (-137.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:53:13.218 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30727, posNoise = 7, negNoise = 7
17-03-17 23:53:13.218 -07 000000462 INF: Z Motor: After move to -0.137716, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:13.218 -07 000000462 INF: Z Motor: Settle wait time = 1414 ms, measure time = 106 ms (allowed 150 ms), total time = 1520 ms
17-03-17 23:53:13.218 -07 000000462 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 23:53:13.268 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1789 ms
17-03-17 23:53:13.268 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:53:13.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:13.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:13.268 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:13.268 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:13.268 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:53:13.268 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:13.268 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:53:13.268 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:53:13.278 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:53:13.278 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:53:13.288 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:53:13.288 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:53:13.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:53:13.338 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:53:13.628 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:53:13.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:53:13.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:53:13.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:53:13.668 -07 000000415 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:53:13.668 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:53:13.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-17 23:53:13.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:53:13.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:13.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:53:13.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:53:13.778 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:13.778 -07 000000459 INF: Autofocus start
17-03-17 23:53:13.778 -07 000000459 INF: MeasureProfile start
17-03-17 23:53:13.778 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:13.788 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:53:13.788 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:53:13.788 -07 000000459 INF: MeasureProfile done
17-03-17 23:53:13.788 -07 000000459 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:53:13.788 -07 000000459 INF: Autofocus finished
17-03-17 23:53:13.988 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:53:13.988 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:53:13.988 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.137720118491024. ----------
17-03-17 23:53:13.988 -07 000000610 INF: Cycle	79	Tile	6	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:53:13.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28608, sync = True, waitForSettling = True)
17-03-17 23:53:13.998 -07 000000610 INF: Z Motor: Moving to -0.130959 mm, started at -0.137720 mm, distance = 6.76 um
17-03-17 23:53:13.998 -07 000000610 INF: FPGA: Xmit ZDACW 28608\n [Z Motor]
17-03-17 23:53:13.998 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:53:14.008 -07 000000610 INF: FPGA: 'ZDACW 28608' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:53:14.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:14.008 -07 000000459 INF: FPGA: Recv ZDACR 28608
17-03-17 23:53:14.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:14.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:53:14.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:14.168 -07 000000459 INF: FPGA: Recv ZSGSRD 29677
17-03-17 23:53:14.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:14.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:14.178 -07 000000512 INF: FPGA: Recv ZSGSRD 29677
17-03-17 23:53:14.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:14.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:14.188 -07 000000459 INF: FPGA: Recv ZSGSRD 29675
17-03-17 23:53:14.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:14.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:14.198 -07 000000482 INF: FPGA: Recv ZSGSRD 29678
17-03-17 23:53:14.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:14.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:14.208 -07 000000475 INF: FPGA: Recv ZSGSRD 29677
17-03-17 23:53:14.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:14.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:14.218 -07 000000512 INF: FPGA: Recv ZSGSRD 29676
17-03-17 23:53:14.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:14.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:14.228 -07 000000475 INF: FPGA: Recv ZSGSRD 29678
17-03-17 23:53:14.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:14.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:14.238 -07 000000482 INF: FPGA: Recv ZSGSRD 29676
17-03-17 23:53:14.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:14.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:14.248 -07 000000475 INF: FPGA: Recv ZSGSRD 29677
17-03-17 23:53:14.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:14.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:14.258 -07 000000512 INF: FPGA: Recv ZSGSRD 29677
17-03-17 23:53:14.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:14.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:14.268 -07 000000475 INF: FPGA: Recv ZPIEZORD 25095
17-03-17 23:53:14.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:14.278 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -10.0 V.
17-03-17 23:53:14.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29677 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29677 (-130.2 uncal um), StdDev = 1 (0.0 uncal um), Range = 3 (0.0 uncal um), Min = 29675 (-130.2 uncal um), Max = 29678 (-130.2 uncal um), Pos Noise = 1 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 23:53:14.278 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29677, posNoise = 1, negNoise = 2
17-03-17 23:53:14.278 -07 000000610 INF: Z Motor: After move to -0.130959, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:14.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:53:14.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:14.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:14.278 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:14.278 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:53:14.278 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:14.278 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:53:14.278 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:53:14.278 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:14.278 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:14.278 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:53:14.278 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:53:14.278 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:53:14.288 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:53:14.288 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:53:14.288 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:53:14.288 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:53:14.298 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:53:14.298 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 23:53:14.298 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:53:14.298 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:53:14.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28785 150\n [Camera]
17-03-17 23:53:14.508 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:53:15.538 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:53:15.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:53:15.538 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:15.538 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:15.538 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:53:15.548 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:53:15.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:53:15.548 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:15.548 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:15.548 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:53:15.738 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28785 1422
17-03-17 23:53:15.888 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:53:15.938 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:53:15.938 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:53:15.938 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:15.948 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:53:15.948 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:53:15.948 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:15.948 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:15.948 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:53:15.948 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:15.958 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 23:53:16.388 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:53:16.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:53:16.388 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:16.388 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:16.388 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:53:16.388 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:53:16.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:53:16.388 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:16.388 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:16.388 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:53:16.578 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 2268
17-03-17 23:53:16.578 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:53:16.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28785 150' command took 2 ms to send, 2266 ms to get response, and 2275 ms overall
17-03-17 23:53:16.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:53:16.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.130974695742175. ------
17-03-17 23:53:16.588 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:16.588 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13729 mm
17-03-17 23:53:16.588 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:53:16.588 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:53:16.588 -07 000000462 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 23:53:16.598 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:16.788 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:53:16.788 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:53:16.788 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:16.788 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:53:16.788 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:53:16.788 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:16.798 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:16.798 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:53:16.798 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:53:16.798 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:53:16.808 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29991, sync = True, waitForSettling = False)
17-03-17 23:53:16.808 -07 000000448 INF: Z Motor: Moving to -0.137290 mm, started at -0.130975 mm, distance = -6.32 um
17-03-17 23:53:16.808 -07 000000448 INF: FPGA: Xmit ZDACW 29991\n [Z Motor]
17-03-17 23:53:16.808 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:16.808 -07 000000382 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:53:16.808 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 218 ms to get response, and 226 ms overall
17-03-17 23:53:16.808 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 208 ms to get response, and 224 ms overall
17-03-17 23:53:16.808 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:53:16.808 -07 000000462 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:16.808 -07 000000462 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:53:16.808 -07 000000462 INF: Y Motor: Moving 1337 steps-11
17-03-17 23:53:16.818 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:53:16.818 -07 000000448 INF: FPGA: 'ZDACW 29991' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:53:16.818 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.985358,
17-03-17 23:53:16.828 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:53:16.848 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:16.848 -07 000000382 INF: FPGA: Recv ZDACR 29991
17-03-17 23:53:16.858 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 23:53:16.858 -07 000000448 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 23:53:17.028 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:53:17.028 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 213 ms overall
17-03-17 23:53:17.108 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:53:17.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:53:17.188 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 23:53:17.188 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 23:53:17.238 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:17.238 -07 000000547 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:53:17.248 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:53:17.248 -07 000000462 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:17.248 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:53:17.248 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.835 mm, average velocity = 2.210 mm/sec
17-03-17 23:53:18.198 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:18.198 -07 000000475 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:53:18.208 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:18.208 -07 000000462 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:18.228 -07 000000462 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:53:18.228 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:53:18.228 -07 000000462 INF: Y Motor: Moved to 64.8789 after 1643 ms (table move)
17-03-17 23:53:18.238 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137290 mm (DAC = 29991)
17-03-17 23:53:18.238 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:18.238 -07 000000409 INF: FPGA: Recv ZSGSRD 30661
17-03-17 23:53:18.248 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:18.248 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:18.248 -07 000000502 INF: FPGA: Recv ZSGSRD 30661
17-03-17 23:53:18.258 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:18.258 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:18.258 -07 000000541 INF: FPGA: Recv ZSGSRD 30660
17-03-17 23:53:18.268 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:18.268 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:18.268 -07 000000502 INF: FPGA: Recv ZSGSRD 30657
17-03-17 23:53:18.278 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:18.278 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:18.278 -07 000000409 INF: FPGA: Recv ZSGSRD 30655
17-03-17 23:53:18.288 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:18.288 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:18.288 -07 000000502 INF: FPGA: Recv ZSGSRD 30663
17-03-17 23:53:18.298 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:18.298 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:18.298 -07 000000409 INF: FPGA: Recv ZSGSRD 30660
17-03-17 23:53:18.308 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:18.308 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:18.308 -07 000000462 INF: FPGA: Recv ZSGSRD 30656
17-03-17 23:53:18.318 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:18.318 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:18.318 -07 000000382 INF: FPGA: Recv ZSGSRD 30660
17-03-17 23:53:18.328 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:18.328 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:18.328 -07 000000502 INF: FPGA: Recv ZSGSRD 30661
17-03-17 23:53:18.338 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:18.338 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:18.338 -07 000000409 INF: FPGA: Recv ZPIEZORD 26405
17-03-17 23:53:18.348 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:18.348 -07 000000618 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -9.4 V.
17-03-17 23:53:18.348 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30659 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30660 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30655 (-136.5 uncal um), Max = 30663 (-136.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:53:18.348 -07 000000618 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30659, posNoise = 4, negNoise = 4
17-03-17 23:53:18.348 -07 000000618 INF: Z Motor: After move to -0.137290, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:18.348 -07 000000618 INF: Z Motor: Settle wait time = 1426 ms, measure time = 109 ms (allowed 150 ms), total time = 1535 ms
17-03-17 23:53:18.348 -07 000000618 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:53:18.398 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1807 ms
17-03-17 23:53:18.398 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:53:18.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:18.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:18.398 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:18.398 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:18.398 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:53:18.398 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:18.398 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:18.398 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:53:18.408 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:53:18.408 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:53:18.418 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:53:18.418 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:53:18.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:53:18.468 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 23:53:18.768 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-17 23:53:18.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-17 23:53:18.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:53:18.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:53:18.808 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:53:18.808 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:53:18.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-17 23:53:18.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:53:18.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:18.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:53:18.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 23:53:19.008 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:19.008 -07 000000448 INF: Autofocus start
17-03-17 23:53:19.008 -07 000000448 INF: MeasureProfile start
17-03-17 23:53:19.008 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:19.018 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:53:19.018 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:53:19.018 -07 000000448 INF: MeasureProfile done
17-03-17 23:53:19.018 -07 000000448 INF: X=35  Z correction [um]=0.1444153
17-03-17 23:53:19.018 -07 000000448 INF: Autofocus finished
17-03-17 23:53:19.218 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:53:19.218 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:53:19.218 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137283272065384. ----------
17-03-17 23:53:19.228 -07 000000610 INF: Cycle	79	Tile	7	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:53:19.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28535, sync = True, waitForSettling = True)
17-03-17 23:53:19.228 -07 000000610 INF: Z Motor: Moving to -0.130625 mm, started at -0.137283 mm, distance = 6.66 um
17-03-17 23:53:19.228 -07 000000610 INF: FPGA: Xmit ZDACW 28535\n [Z Motor]
17-03-17 23:53:19.228 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:53:19.238 -07 000000610 INF: FPGA: 'ZDACW 28535' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:53:19.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:19.238 -07 000000382 INF: FPGA: Recv ZDACR 28535
17-03-17 23:53:19.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:19.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:53:19.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:19.398 -07 000000448 INF: FPGA: Recv ZSGSRD 29628
17-03-17 23:53:19.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:19.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:19.408 -07 000000475 INF: FPGA: Recv ZSGSRD 29621
17-03-17 23:53:19.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:19.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:19.418 -07 000000448 INF: FPGA: Recv ZSGSRD 29617
17-03-17 23:53:19.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:19.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:19.428 -07 000000382 INF: FPGA: Recv ZSGSRD 29626
17-03-17 23:53:19.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:19.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:19.438 -07 000000382 INF: FPGA: Recv ZSGSRD 29623
17-03-17 23:53:19.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:19.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:19.448 -07 000000382 INF: FPGA: Recv ZSGSRD 29623
17-03-17 23:53:19.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:19.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:19.458 -07 000000475 INF: FPGA: Recv ZSGSRD 29625
17-03-17 23:53:19.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:19.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:19.468 -07 000000448 INF: FPGA: Recv ZSGSRD 29621
17-03-17 23:53:19.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:19.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:19.478 -07 000000462 INF: FPGA: Recv ZSGSRD 29619
17-03-17 23:53:19.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:19.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:19.488 -07 000000618 INF: FPGA: Recv ZSGSRD 29620
17-03-17 23:53:19.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:19.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:19.498 -07 000000547 INF: FPGA: Recv ZPIEZORD 25029
17-03-17 23:53:19.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:19.508 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -10.1 V.
17-03-17 23:53:19.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29622 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29622 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29617 (-129.8 uncal um), Max = 29628 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:53:19.508 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29622, posNoise = 6, negNoise = 5
17-03-17 23:53:19.508 -07 000000610 INF: Z Motor: After move to -0.130625, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:19.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:53:19.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:19.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:19.508 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:19.508 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:19.508 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:53:19.508 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:53:19.508 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:53:19.508 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:19.508 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:53:19.508 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:53:19.508 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:19.508 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:53:19.518 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:53:19.518 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:53:19.518 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:53:19.518 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:53:19.528 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:53:19.528 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:53:19.528 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:53:19.528 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:53:19.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28712 150\n [Camera]
17-03-17 23:53:19.738 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:53:20.768 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:53:20.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:53:20.778 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:53:20.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:53:20.778 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:20.778 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:20.778 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:20.778 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:53:20.778 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:20.778 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:53:20.968 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28712 1422
17-03-17 23:53:21.118 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:53:21.178 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:53:21.178 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:53:21.178 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:53:21.178 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:21.178 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:53:21.178 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:21.188 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:21.188 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:21.188 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:53:21.188 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 23:53:21.618 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:53:21.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:53:21.618 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:21.618 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:21.618 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:53:21.618 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:53:21.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:53:21.618 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:21.618 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:21.618 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:53:21.808 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:53:21.808 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:53:21.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28712 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:53:21.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:53:21.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.130621364074378. ------
17-03-17 23:53:21.808 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:21.808 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13737 mm
17-03-17 23:53:21.808 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:53:21.918 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:21.918 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 112 ms overall
17-03-17 23:53:21.928 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:53:21.928 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:53:21.928 -07 000000618 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 23:53:21.938 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:22.008 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 23:53:22.008 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:53:22.008 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:22.008 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:53:22.008 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:53:22.008 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:22.008 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:22.008 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:22.008 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:53:22.018 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:53:22.028 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 30007, sync = True, waitForSettling = False)
17-03-17 23:53:22.028 -07 000000547 INF: Z Motor: Moving to -0.137363 mm, started at -0.130621 mm, distance = -6.74 um
17-03-17 23:53:22.028 -07 000000547 INF: FPGA: Xmit ZDACW 30007\n [Z Motor]
17-03-17 23:53:22.028 -07 000000462 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:53:22.028 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:53:22.028 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 83 ms to get response, and 100 ms overall
17-03-17 23:53:22.028 -07 000000618 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:22.028 -07 000000618 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:53:22.028 -07 000000618 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:53:22.038 -07 000000547 INF: FPGA: 'ZDACW 30007' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:22.038 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:53:22.048 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:22.048 -07 000000462 INF: FPGA: Recv ZDACR 30007
17-03-17 23:53:22.058 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:53:22.058 -07 000000547 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 23:53:22.108 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:53:22.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:53:22.128 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:53:22.128 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 23:53:22.338 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.989471,
17-03-17 23:53:22.408 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 23:53:22.408 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 23:53:22.448 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:22.458 -07 000000475 INF: FPGA: Recv YRDPOS 134582
17-03-17 23:53:22.458 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:53:22.458 -07 000000618 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:22.458 -07 000000618 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:53:22.458 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.197 mm/sec
17-03-17 23:53:23.408 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:23.408 -07 000000462 INF: FPGA: Recv YRDPOS 134582
17-03-17 23:53:23.418 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:23.418 -07 000000618 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:23.448 -07 000000618 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:53:23.448 -07 000000618 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:53:23.448 -07 000000618 INF: Y Motor: Moved to 65.7139 after 1519 ms (table move)
17-03-17 23:53:23.448 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137363 mm (DAC = 30007)
17-03-17 23:53:23.448 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:23.448 -07 000000623 INF: FPGA: Recv ZSGSRD 30672
17-03-17 23:53:23.458 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:53:23.458 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:23.458 -07 000000475 INF: FPGA: Recv ZSGSRD 30671
17-03-17 23:53:23.468 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:23.468 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:23.468 -07 000000462 INF: FPGA: Recv ZSGSRD 30667
17-03-17 23:53:23.478 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:23.478 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:23.478 -07 000000462 INF: FPGA: Recv ZSGSRD 30675
17-03-17 23:53:23.488 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:23.488 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:23.488 -07 000000475 INF: FPGA: Recv ZSGSRD 30674
17-03-17 23:53:23.498 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:23.498 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:23.498 -07 000000475 INF: FPGA: Recv ZSGSRD 30678
17-03-17 23:53:23.508 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:23.508 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:23.508 -07 000000459 INF: FPGA: Recv ZSGSRD 30666
17-03-17 23:53:23.518 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:23.518 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:23.518 -07 000000475 INF: FPGA: Recv ZSGSRD 30673
17-03-17 23:53:23.528 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:23.528 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:23.528 -07 000000459 INF: FPGA: Recv ZSGSRD 30668
17-03-17 23:53:23.538 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:23.538 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:23.538 -07 000000475 INF: FPGA: Recv ZSGSRD 30669
17-03-17 23:53:23.548 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:23.548 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:23.548 -07 000000547 INF: FPGA: Recv ZPIEZORD 26454
17-03-17 23:53:23.558 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:23.558 -07 000000541 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.579 V. Piezo Error = -9.3 V.
17-03-17 23:53:23.558 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30671 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30672 (-136.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30666 (-136.5 uncal um), Max = 30678 (-136.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:53:23.558 -07 000000541 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30671, posNoise = 7, negNoise = 5
17-03-17 23:53:23.558 -07 000000541 INF: Z Motor: After move to -0.137363, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:23.558 -07 000000541 INF: Z Motor: Settle wait time = 1425 ms, measure time = 105 ms (allowed 150 ms), total time = 1530 ms
17-03-17 23:53:23.558 -07 000000541 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 23:53:23.608 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1792 ms
17-03-17 23:53:23.608 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:53:23.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:23.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:23.608 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:23.608 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:23.608 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:53:23.608 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:23.608 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:23.608 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:53:23.618 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:53:23.618 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:53:23.628 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:53:23.628 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:53:23.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:53:23.668 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:53:23.968 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:53:23.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:53:23.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:53:23.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:53:24.008 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:53:24.008 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 23:53:24.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-17 23:53:24.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:53:24.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:24.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:53:24.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:53:24.208 -07 000000512 INF: Autofocus start
17-03-17 23:53:24.208 -07 000000512 INF: MeasureProfile start
17-03-17 23:53:24.208 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:24.208 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:24.218 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:53:24.218 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:53:24.218 -07 000000512 INF: MeasureProfile done
17-03-17 23:53:24.218 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:53:24.218 -07 000000512 INF: Autofocus finished
17-03-17 23:53:24.418 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:53:24.418 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:53:24.418 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.137360362611085. ----------
17-03-17 23:53:24.418 -07 000000610 INF: Cycle	79	Tile	8	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:53:24.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28515, sync = True, waitForSettling = True)
17-03-17 23:53:24.428 -07 000000610 INF: Z Motor: Moving to -0.130533 mm, started at -0.137360 mm, distance = 6.83 um
17-03-17 23:53:24.428 -07 000000610 INF: FPGA: Xmit ZDACW 28515\n [Z Motor]
17-03-17 23:53:24.428 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:53:24.438 -07 000000610 INF: FPGA: 'ZDACW 28515' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:53:24.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:24.438 -07 000000475 INF: FPGA: Recv ZDACR 28515
17-03-17 23:53:24.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:24.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:53:24.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:24.598 -07 000000429 INF: FPGA: Recv ZSGSRD 29610
17-03-17 23:53:24.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:24.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:24.608 -07 000000429 INF: FPGA: Recv ZSGSRD 29614
17-03-17 23:53:24.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:24.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:24.618 -07 000000429 INF: FPGA: Recv ZSGSRD 29606
17-03-17 23:53:24.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:24.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:24.628 -07 000000462 INF: FPGA: Recv ZSGSRD 29611
17-03-17 23:53:24.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:24.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:24.638 -07 000000462 INF: FPGA: Recv ZSGSRD 29607
17-03-17 23:53:24.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:24.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:24.648 -07 000000462 INF: FPGA: Recv ZSGSRD 29613
17-03-17 23:53:24.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:24.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:24.658 -07 000000462 INF: FPGA: Recv ZSGSRD 29609
17-03-17 23:53:24.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:24.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:24.668 -07 000000429 INF: FPGA: Recv ZSGSRD 29601
17-03-17 23:53:24.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:24.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:24.678 -07 000000429 INF: FPGA: Recv ZSGSRD 29609
17-03-17 23:53:24.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:24.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:24.688 -07 000000623 INF: FPGA: Recv ZSGSRD 29612
17-03-17 23:53:24.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:24.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:24.698 -07 000000478 INF: FPGA: Recv ZPIEZORD 25021
17-03-17 23:53:24.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:24.708 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -10.1 V.
17-03-17 23:53:24.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29609 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29610 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29601 (-129.7 uncal um), Max = 29614 (-129.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:53:24.708 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29609, posNoise = 5, negNoise = 8
17-03-17 23:53:24.708 -07 000000610 INF: Z Motor: After move to -0.130533, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:24.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:53:24.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:24.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:24.708 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:24.708 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:24.708 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:53:24.708 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:24.708 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:53:24.708 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:53:24.708 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:24.708 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:53:24.708 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:53:24.708 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:53:24.718 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:53:24.718 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:53:24.718 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:53:24.718 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:53:24.728 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 23:53:24.728 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:53:24.728 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 23:53:24.728 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:53:24.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28692 150\n [Camera]
17-03-17 23:53:24.928 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:53:25.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1231
17-03-17 23:53:25.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1231
17-03-17 23:53:25.968 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:25.978 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1232
17-03-17 23:53:25.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1232
17-03-17 23:53:25.978 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:25.978 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:25.978 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:53:25.978 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:25.978 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:53:26.158 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28692 1422
17-03-17 23:53:26.308 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:53:26.358 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:53:26.358 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 23:53:26.358 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:26.368 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:26.368 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 23:53:26.368 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:53:26.368 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:26.368 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:26.368 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:53:26.378 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:53:26.808 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:53:26.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:53:26.818 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:26.818 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:53:26.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:53:26.818 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:26.828 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:26.828 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:53:26.828 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:26.828 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:53:27.008 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-17 23:53:27.008 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:53:27.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28692 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall
17-03-17 23:53:27.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:53:27.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.130537849316535. ------
17-03-17 23:53:27.008 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:27.008 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13699 mm
17-03-17 23:53:27.008 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:53:27.248 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 419 ms.
17-03-17 23:53:27.248 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 23:53:27.248 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:27.248 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 423 ms.
17-03-17 23:53:27.248 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 424 ms.
17-03-17 23:53:27.248 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:27.248 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:53:27.258 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:53:27.258 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 441 ms.
17-03-17 23:53:27.258 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 446 ms.
17-03-17 23:53:27.288 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:53:27.288 -07 000000547 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 23:53:27.288 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:27.298 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:27.298 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:53:27.298 -07 000000478 INF: FPGA: Recv YRDPOS 134583
17-03-17 23:53:27.298 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 7 ms to get response, and 12 ms overall
17-03-17 23:53:27.298 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 287 ms to get response, and 291 ms overall
17-03-17 23:53:27.298 -07 000000547 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:27.298 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:53:27.298 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:53:27.298 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29925, sync = True, waitForSettling = False)
17-03-17 23:53:27.298 -07 000000478 INF: Z Motor: Moving to -0.136988 mm, started at -0.130538 mm, distance = -6.45 um
17-03-17 23:53:27.308 -07 000000478 INF: FPGA: Xmit ZDACW 29925\n [Z Motor]
17-03-17 23:53:27.308 -07 000000547 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:53:27.308 -07 000000547 INF: Y Motor: Moving 1341 steps-18
17-03-17 23:53:27.318 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:53:28.218 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:53:28.218 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:53:28.218 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 23:53:28.218 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 890 ms to get response, and 906 ms overall
17-03-17 23:53:28.218 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 910 ms to get response, and 913 ms overall
17-03-17 23:53:28.218 -07 000000478 INF: FPGA: 'ZDACW 29925' command took 0 ms to send, 900 ms to get response, and 912 ms overall
17-03-17 23:53:28.218 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:28.218 -07 000000561 INF: FPGA: Recv ZDACR 29925
17-03-17 23:53:28.228 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:53:28.228 -07 000000478 INF: Z Motor: MoveAbsStepped took 921 ms (did NOT wait for settling yet))
17-03-17 23:53:28.258 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:28.268 -07 000000459 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:53:28.278 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:28.278 -07 000000547 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:28.278 -07 000000547 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:53:28.278 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 906 ms, distance = 0.839 mm, average velocity = 0.926 mm/sec
17-03-17 23:53:28.838 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.018051,
17-03-17 23:53:29.228 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:29.228 -07 000000459 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:53:29.238 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:29.238 -07 000000547 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:29.258 -07 000000547 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:53:29.258 -07 000000547 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:53:29.258 -07 000000547 INF: Y Motor: Moved to 66.5391 after 1973 ms (table move)
17-03-17 23:53:29.268 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136988 mm (DAC = 29925)
17-03-17 23:53:29.268 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:29.268 -07 000000482 INF: FPGA: Recv ZSGSRD 30611
17-03-17 23:53:29.278 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:53:29.278 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:29.278 -07 000000478 INF: FPGA: Recv ZSGSRD 30609
17-03-17 23:53:29.288 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:29.288 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:29.288 -07 000000501 INF: FPGA: Recv ZSGSRD 30620
17-03-17 23:53:29.298 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:29.298 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:29.298 -07 000000478 INF: FPGA: Recv ZSGSRD 30615
17-03-17 23:53:29.308 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:29.308 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:29.308 -07 000000501 INF: FPGA: Recv ZSGSRD 30609
17-03-17 23:53:29.318 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:29.318 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:29.318 -07 000000482 INF: FPGA: Recv ZSGSRD 30621
17-03-17 23:53:29.328 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:29.328 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:29.328 -07 000000459 INF: FPGA: Recv ZSGSRD 30615
17-03-17 23:53:29.338 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:29.338 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:29.338 -07 000000478 INF: FPGA: Recv ZSGSRD 30616
17-03-17 23:53:29.348 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:29.348 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:29.348 -07 000000459 INF: FPGA: Recv ZSGSRD 30608
17-03-17 23:53:29.358 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:29.358 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:29.358 -07 000000547 INF: FPGA: Recv ZSGSRD 30615
17-03-17 23:53:29.368 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:53:29.368 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:29.368 -07 000000478 INF: FPGA: Recv ZPIEZORD 26362
17-03-17 23:53:29.378 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:29.378 -07 000000623 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.566 V. Piezo Error = -9.3 V.
17-03-17 23:53:29.378 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30614 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30615 (-136.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30608 (-136.2 uncal um), Max = 30621 (-136.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:53:29.378 -07 000000623 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30614, posNoise = 7, negNoise = 6
17-03-17 23:53:29.378 -07 000000623 INF: Z Motor: After move to -0.136988, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:29.378 -07 000000623 INF: Z Motor: Settle wait time = 1962 ms, measure time = 110 ms (allowed 150 ms), total time = 2072 ms
17-03-17 23:53:29.378 -07 000000623 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:53:29.418 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2404 ms
17-03-17 23:53:29.418 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:53:29.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:29.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:29.418 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:29.418 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:29.418 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:53:29.418 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:29.418 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:29.418 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:53:29.418 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:53:29.418 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:53:29.438 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:53:29.438 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:53:29.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:53:29.488 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:53:29.788 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:53:29.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:53:29.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:53:29.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:53:29.818 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:53:29.828 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 23:53:29.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-17 23:53:29.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:53:29.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:29.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:53:29.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:53:29.928 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:29.928 -07 000000501 INF: Autofocus start
17-03-17 23:53:29.928 -07 000000501 INF: MeasureProfile start
17-03-17 23:53:29.928 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:29.938 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:53:29.938 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:53:29.938 -07 000000501 INF: MeasureProfile done
17-03-17 23:53:29.938 -07 000000501 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 23:53:29.938 -07 000000501 INF: Autofocus finished
17-03-17 23:53:30.138 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:53:30.138 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:53:30.138 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.136994182519005. ----------
17-03-17 23:53:30.138 -07 000000610 INF: Cycle	79	Tile	9	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:53:30.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28402, sync = True, waitForSettling = True)
17-03-17 23:53:30.148 -07 000000610 INF: Z Motor: Moving to -0.130016 mm, started at -0.136994 mm, distance = 6.98 um
17-03-17 23:53:30.148 -07 000000610 INF: FPGA: Xmit ZDACW 28402\n [Z Motor]
17-03-17 23:53:30.148 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:53:30.158 -07 000000610 INF: FPGA: 'ZDACW 28402' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:53:30.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:30.158 -07 000000623 INF: FPGA: Recv ZDACR 28402
17-03-17 23:53:30.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:30.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:53:30.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:30.318 -07 000000382 INF: FPGA: Recv ZSGSRD 29525
17-03-17 23:53:30.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:30.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:30.328 -07 000000501 INF: FPGA: Recv ZSGSRD 29526
17-03-17 23:53:30.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:30.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:30.338 -07 000000501 INF: FPGA: Recv ZSGSRD 29527
17-03-17 23:53:30.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:30.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:30.348 -07 000000561 INF: FPGA: Recv ZSGSRD 29532
17-03-17 23:53:30.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:30.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:30.358 -07 000000501 INF: FPGA: Recv ZSGSRD 29533
17-03-17 23:53:30.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:30.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:30.368 -07 000000501 INF: FPGA: Recv ZSGSRD 29523
17-03-17 23:53:30.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:30.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:30.378 -07 000000501 INF: FPGA: Recv ZSGSRD 29529
17-03-17 23:53:30.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:30.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:30.388 -07 000000561 INF: FPGA: Recv ZSGSRD 29528
17-03-17 23:53:30.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:30.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:30.398 -07 000000501 INF: FPGA: Recv ZSGSRD 29527
17-03-17 23:53:30.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:30.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:30.408 -07 000000561 INF: FPGA: Recv ZSGSRD 29526
17-03-17 23:53:30.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:30.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:30.418 -07 000000501 INF: FPGA: Recv ZPIEZORD 24917
17-03-17 23:53:30.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:30.428 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -10.1 V.
17-03-17 23:53:30.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29528 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29527 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29523 (-129.2 uncal um), Max = 29533 (-129.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:53:30.428 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29528, posNoise = 5, negNoise = 5
17-03-17 23:53:30.428 -07 000000610 INF: Z Motor: After move to -0.130016, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:30.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:53:30.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:30.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:30.428 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:30.428 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:30.428 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:53:30.428 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:30.428 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:53:30.428 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:53:30.428 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:30.428 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:53:30.428 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:53:30.428 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:53:30.438 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:53:30.438 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:53:30.438 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:53:30.438 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:53:30.448 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:53:30.448 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:53:30.448 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:53:30.448 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:53:30.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28579 150\n [Camera]
17-03-17 23:53:30.658 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:53:31.688 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:53:31.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:53:31.688 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:31.688 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:31.688 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:53:31.698 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:53:31.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:53:31.698 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:31.698 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:31.698 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:53:31.888 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28579 1423
17-03-17 23:53:32.038 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:53:32.098 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:53:32.098 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:53:32.098 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:32.098 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:53:32.098 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:53:32.098 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:32.098 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:32.098 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:53:32.098 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:32.108 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:53:32.108 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:53:32.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:53:32.538 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:53:32.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:53:32.538 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:32.538 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:32.538 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:53:32.538 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:53:32.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:53:32.538 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:32.538 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:32.538 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:53:32.728 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-17 23:53:32.728 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:53:32.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28579 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:53:32.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:53:32.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130017488133053. ------
17-03-17 23:53:32.728 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:32.728 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13673 mm
17-03-17 23:53:32.728 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:53:32.738 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:53:32.738 -07 000000459 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 23:53:32.738 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 29868, sync = True, waitForSettling = False)
17-03-17 23:53:32.738 -07 000000482 INF: Z Motor: Moving to -0.136727 mm, started at -0.130017 mm, distance = -6.71 um
17-03-17 23:53:32.738 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:32.738 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:53:32.738 -07 000000482 INF: FPGA: Xmit ZDACW 29868\n [Z Motor]
17-03-17 23:53:32.738 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:53:32.858 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:53:32.858 -07 000000482 INF: FPGA: 'ZDACW 29868' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-17 23:53:32.868 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:32.878 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:32.938 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:53:32.938 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:53:32.938 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:32.938 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:53:32.938 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:53:32.938 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:32.938 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:32.938 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:53:32.938 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:53:32.948 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:53:32.958 -07 000000547 INF: FPGA: Recv ZDACR 29868
17-03-17 23:53:32.958 -07 000000547 INF: FPGA: Recv YRDPOS 136273
17-03-17 23:53:32.958 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 72 ms to get response, and 222 ms overall
17-03-17 23:53:32.958 -07 000000459 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:32.958 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 82 ms to get response, and 94 ms overall
17-03-17 23:53:32.958 -07 000000482 INF: Z Motor: MoveAbsStepped took 223 ms (did NOT wait for settling yet))
17-03-17 23:53:32.958 -07 000000459 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:53:32.958 -07 000000459 INF: Y Motor: Moving 1349 steps-28
17-03-17 23:53:32.958 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:53:33.068 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:53:33.068 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 328 ms overall
17-03-17 23:53:33.338 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 23:53:33.338 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 376 ms to get response, and 378 ms overall
17-03-17 23:53:33.378 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:33.388 -07 000000547 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:53:33.388 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:53:33.388 -07 000000459 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:33.388 -07 000000459 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 23:53:33.388 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.232 mm/sec
17-03-17 23:53:34.208 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.000345,
17-03-17 23:53:34.338 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:34.338 -07 000000482 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:53:34.348 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:34.348 -07 000000459 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:34.368 -07 000000459 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:53:34.368 -07 000000459 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:53:34.368 -07 000000459 INF: Y Motor: Moved to 67.3721 after 1637 ms (table move)
17-03-17 23:53:34.378 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136727 mm (DAC = 29868)
17-03-17 23:53:34.378 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:34.378 -07 000000462 INF: FPGA: Recv ZSGSRD 30571
17-03-17 23:53:34.388 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:53:34.388 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:34.388 -07 000000459 INF: FPGA: Recv ZSGSRD 30567
17-03-17 23:53:34.398 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:34.398 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:34.398 -07 000000462 INF: FPGA: Recv ZSGSRD 30569
17-03-17 23:53:34.408 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:34.408 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:34.408 -07 000000482 INF: FPGA: Recv ZSGSRD 30568
17-03-17 23:53:34.418 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:34.418 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:34.418 -07 000000462 INF: FPGA: Recv ZSGSRD 30571
17-03-17 23:53:34.428 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:34.428 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:34.428 -07 000000501 INF: FPGA: Recv ZSGSRD 30581
17-03-17 23:53:34.438 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:34.438 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:34.438 -07 000000462 INF: FPGA: Recv ZSGSRD 30576
17-03-17 23:53:34.448 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:34.448 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:34.448 -07 000000512 INF: FPGA: Recv ZSGSRD 30576
17-03-17 23:53:34.458 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:34.458 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:34.458 -07 000000459 INF: FPGA: Recv ZSGSRD 30569
17-03-17 23:53:34.468 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:34.468 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:34.468 -07 000000512 INF: FPGA: Recv ZSGSRD 30568
17-03-17 23:53:34.478 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:34.478 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:34.478 -07 000000501 INF: FPGA: Recv ZPIEZORD 26345
17-03-17 23:53:34.488 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:34.488 -07 000000478 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.558 V. Piezo Error = -9.3 V.
17-03-17 23:53:34.488 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30572 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30570 (-135.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30567 (-135.9 uncal um), Max = 30581 (-136.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:53:34.488 -07 000000478 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30572, posNoise = 9, negNoise = 5
17-03-17 23:53:34.488 -07 000000478 INF: Z Motor: After move to -0.136727, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:34.488 -07 000000478 INF: Z Motor: Settle wait time = 1641 ms, measure time = 109 ms (allowed 150 ms), total time = 1750 ms
17-03-17 23:53:34.488 -07 000000478 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:53:34.538 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1802 ms
17-03-17 23:53:34.538 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:53:34.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:34.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:34.538 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:34.538 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:34.538 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:53:34.538 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:34.538 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:34.548 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:53:34.548 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:53:34.548 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:53:34.558 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:53:34.558 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:53:34.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:53:34.608 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:53:34.908 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:53:34.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:53:34.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:53:34.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:53:34.948 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:53:34.948 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 23:53:34.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-17 23:53:35.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:53:35.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:35.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:53:35.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:53:35.048 -07 000000501 INF: Autofocus start
17-03-17 23:53:35.048 -07 000000501 INF: MeasureProfile start
17-03-17 23:53:35.048 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:35.048 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:35.058 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:53:35.058 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:53:35.058 -07 000000501 INF: MeasureProfile done
17-03-17 23:53:35.058 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:53:35.058 -07 000000501 INF: Autofocus finished
17-03-17 23:53:35.258 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:53:35.258 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:53:35.258 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.136724365609051. ----------
17-03-17 23:53:35.258 -07 000000610 INF: Cycle	79	Tile	10	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:53:35.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28392, sync = True, waitForSettling = True)
17-03-17 23:53:35.268 -07 000000610 INF: Z Motor: Moving to -0.129970 mm, started at -0.136724 mm, distance = 6.75 um
17-03-17 23:53:35.268 -07 000000610 INF: FPGA: Xmit ZDACW 28392\n [Z Motor]
17-03-17 23:53:35.268 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:53:35.278 -07 000000610 INF: FPGA: 'ZDACW 28392' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:53:35.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:35.278 -07 000000512 INF: FPGA: Recv ZDACR 28392
17-03-17 23:53:35.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:35.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:53:35.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:35.438 -07 000000482 INF: FPGA: Recv ZSGSRD 29523
17-03-17 23:53:35.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:35.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:35.448 -07 000000512 INF: FPGA: Recv ZSGSRD 29522
17-03-17 23:53:35.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:35.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:35.458 -07 000000459 INF: FPGA: Recv ZSGSRD 29518
17-03-17 23:53:35.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:35.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:35.468 -07 000000475 INF: FPGA: Recv ZSGSRD 29519
17-03-17 23:53:35.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:35.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:35.478 -07 000000501 INF: FPGA: Recv ZSGSRD 29526
17-03-17 23:53:35.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:35.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:35.488 -07 000000478 INF: FPGA: Recv ZSGSRD 29522
17-03-17 23:53:35.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:35.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:35.498 -07 000000501 INF: FPGA: Recv ZSGSRD 29520
17-03-17 23:53:35.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:35.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:35.508 -07 000000475 INF: FPGA: Recv ZSGSRD 29525
17-03-17 23:53:35.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:35.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:35.518 -07 000000459 INF: FPGA: Recv ZSGSRD 29526
17-03-17 23:53:35.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:35.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:35.528 -07 000000478 INF: FPGA: Recv ZSGSRD 29521
17-03-17 23:53:35.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:35.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:35.538 -07 000000501 INF: FPGA: Recv ZPIEZORD 24952
17-03-17 23:53:35.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:35.548 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.332 V. Piezo Error = -10.0 V.
17-03-17 23:53:35.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29522 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29522 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29518 (-129.2 uncal um), Max = 29526 (-129.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:53:35.548 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29522, posNoise = 4, negNoise = 4
17-03-17 23:53:35.548 -07 000000610 INF: Z Motor: After move to -0.129970, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:35.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:53:35.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:35.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:35.548 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:35.548 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:35.548 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:53:35.548 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:35.548 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:53:35.548 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:53:35.548 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:35.548 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:53:35.548 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:53:35.548 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:53:35.558 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:53:35.558 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:53:35.558 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:53:35.558 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:53:35.568 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:53:35.568 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:53:35.568 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:53:35.568 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:53:35.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28569 150\n [Camera]
17-03-17 23:53:35.778 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 23:53:36.808 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:53:36.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:53:36.808 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:36.818 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:53:36.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:53:36.818 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:36.818 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:36.818 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:53:36.818 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:36.818 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:53:37.008 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28569 1422
17-03-17 23:53:37.108 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:53:37.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:53:37.148 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:53:37.208 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:53:37.208 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:53:37.208 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:37.218 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:53:37.218 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:53:37.218 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:37.218 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:37.218 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:53:37.218 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:37.228 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:53:37.658 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:53:37.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:53:37.658 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:37.658 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:53:37.658 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:37.658 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:53:37.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:53:37.658 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:37.658 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:37.658 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:53:37.848 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:53:37.848 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:53:37.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28569 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:53:37.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:53:37.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.129978942860202. ------
17-03-17 23:53:37.958 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:37.958 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13640 mm
17-03-17 23:53:37.958 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:53:37.968 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:37.968 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:53:37.968 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:53:37.968 -07 000000462 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 23:53:37.968 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29798, sync = True, waitForSettling = False)
17-03-17 23:53:37.968 -07 000000501 INF: Z Motor: Moving to -0.136407 mm, started at -0.129979 mm, distance = -6.43 um
17-03-17 23:53:37.968 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:53:37.978 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:37.978 -07 000000429 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:53:37.988 -07 000000501 INF: FPGA: Xmit ZDACW 29798\n [Z Motor]
17-03-17 23:53:37.988 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:53:37.988 -07 000000462 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:37.988 -07 000000462 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:53:37.988 -07 000000462 INF: Y Motor: Moving 1345 steps-22
17-03-17 23:53:37.988 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:53:37.998 -07 000000501 INF: FPGA: 'ZDACW 29798' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:53:37.998 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:37.998 -07 000000429 INF: FPGA: Recv ZDACR 29798
17-03-17 23:53:38.008 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:53:38.008 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:38.008 -07 000000501 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 23:53:38.058 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:53:38.058 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:53:38.058 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:38.058 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:53:38.058 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:53:38.058 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:38.058 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:38.058 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:53:38.058 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:38.068 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:53:38.178 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:53:38.178 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 200 ms to get response, and 207 ms overall
17-03-17 23:53:38.388 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 23:53:38.388 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 23:53:38.428 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:38.428 -07 000000618 INF: FPGA: Recv YRDPOS 139684
17-03-17 23:53:38.438 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:53:38.438 -07 000000462 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:38.438 -07 000000462 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 23:53:38.438 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.841 mm, average velocity = 2.096 mm/sec
17-03-17 23:53:39.388 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:39.388 -07 000000618 INF: FPGA: Recv YRDPOS 139684
17-03-17 23:53:39.398 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:39.398 -07 000000462 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:39.418 -07 000000462 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:53:39.418 -07 000000462 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:53:39.418 -07 000000462 INF: Y Motor: Moved to 68.2051 after 1454 ms (table move)
17-03-17 23:53:39.428 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136407 mm (DAC = 29798)
17-03-17 23:53:39.428 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:39.428 -07 000000618 INF: FPGA: Recv ZSGSRD 30520
17-03-17 23:53:39.438 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:39.438 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:39.438 -07 000000618 INF: FPGA: Recv ZSGSRD 30526
17-03-17 23:53:39.448 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:39.448 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:39.448 -07 000000482 INF: FPGA: Recv ZSGSRD 30526
17-03-17 23:53:39.458 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:39.458 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:39.458 -07 000000462 INF: FPGA: Recv ZSGSRD 30529
17-03-17 23:53:39.468 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:39.468 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:39.468 -07 000000462 INF: FPGA: Recv ZSGSRD 30522
17-03-17 23:53:39.478 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:39.478 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:39.478 -07 000000462 INF: FPGA: Recv ZSGSRD 30526
17-03-17 23:53:39.488 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:39.488 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:39.488 -07 000000512 INF: FPGA: Recv ZSGSRD 30527
17-03-17 23:53:39.498 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:39.498 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:39.498 -07 000000462 INF: FPGA: Recv ZSGSRD 30519
17-03-17 23:53:39.508 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:39.508 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:39.508 -07 000000482 INF: FPGA: Recv ZSGSRD 30516
17-03-17 23:53:39.518 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:39.518 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:39.518 -07 000000618 INF: FPGA: Recv ZSGSRD 30527
17-03-17 23:53:39.528 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:39.528 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:39.528 -07 000000482 INF: FPGA: Recv ZPIEZORD 26307
17-03-17 23:53:39.538 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:39.538 -07 000000459 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -9.3 V.
17-03-17 23:53:39.538 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30524 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30526 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30516 (-135.6 uncal um), Max = 30529 (-135.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:53:39.538 -07 000000459 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30524, posNoise = 5, negNoise = 8
17-03-17 23:53:39.538 -07 000000459 INF: Z Motor: After move to -0.136407, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:39.538 -07 000000459 INF: Z Motor: Settle wait time = 1457 ms, measure time = 109 ms (allowed 150 ms), total time = 1566 ms
17-03-17 23:53:39.538 -07 000000459 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:53:39.578 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.000345,
17-03-17 23:53:39.588 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-17 23:53:39.588 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:53:39.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:39.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:39.588 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:39.588 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:39.588 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:53:39.588 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:39.588 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:53:39.588 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:53:39.598 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:53:39.598 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:53:39.608 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:53:39.608 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:53:39.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:53:39.658 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:53:39.958 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:53:39.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:53:39.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:53:39.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:53:39.998 -07 000000623 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:53:39.998 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 23:53:39.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 389 ms overall
17-03-17 23:53:40.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:53:40.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:40.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:53:40.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:53:40.098 -07 000000382 INF: Autofocus start
17-03-17 23:53:40.098 -07 000000382 INF: MeasureProfile start
17-03-17 23:53:40.098 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:40.098 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:40.108 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:53:40.108 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:53:40.108 -07 000000382 INF: MeasureProfile done
17-03-17 23:53:40.108 -07 000000382 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:53:40.108 -07 000000382 INF: Autofocus finished
17-03-17 23:53:40.308 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:53:40.308 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:53:40.308 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.136416003426246. ----------
17-03-17 23:53:40.308 -07 000000610 INF: Cycle	79	Tile	11	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:53:40.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28322, sync = True, waitForSettling = True)
17-03-17 23:53:40.318 -07 000000610 INF: Z Motor: Moving to -0.129650 mm, started at -0.136416 mm, distance = 6.77 um
17-03-17 23:53:40.318 -07 000000610 INF: FPGA: Xmit ZDACW 28322\n [Z Motor]
17-03-17 23:53:40.318 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:53:40.328 -07 000000610 INF: FPGA: 'ZDACW 28322' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:40.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:40.328 -07 000000482 INF: FPGA: Recv ZDACR 28322
17-03-17 23:53:40.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:40.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:53:40.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:40.488 -07 000000462 INF: FPGA: Recv ZSGSRD 29473
17-03-17 23:53:40.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:40.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:40.498 -07 000000512 INF: FPGA: Recv ZSGSRD 29479
17-03-17 23:53:40.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:40.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:40.508 -07 000000512 INF: FPGA: Recv ZSGSRD 29472
17-03-17 23:53:40.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:40.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:40.518 -07 000000512 INF: FPGA: Recv ZSGSRD 29464
17-03-17 23:53:40.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:40.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:40.528 -07 000000512 INF: FPGA: Recv ZSGSRD 29477
17-03-17 23:53:40.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:40.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:40.538 -07 000000482 INF: FPGA: Recv ZSGSRD 29472
17-03-17 23:53:40.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:40.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:40.548 -07 000000512 INF: FPGA: Recv ZSGSRD 29473
17-03-17 23:53:40.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:40.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:40.558 -07 000000482 INF: FPGA: Recv ZSGSRD 29476
17-03-17 23:53:40.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:40.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:40.568 -07 000000512 INF: FPGA: Recv ZSGSRD 29468
17-03-17 23:53:40.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:40.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:40.578 -07 000000618 INF: FPGA: Recv ZSGSRD 29472
17-03-17 23:53:40.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:40.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:40.588 -07 000000512 INF: FPGA: Recv ZPIEZORD 24880
17-03-17 23:53:40.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:40.598 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -10.1 V.
17-03-17 23:53:40.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29473 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29472 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29464 (-128.8 uncal um), Max = 29479 (-128.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:53:40.598 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29473, posNoise = 6, negNoise = 9
17-03-17 23:53:40.598 -07 000000610 INF: Z Motor: After move to -0.129650, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:40.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:53:40.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:40.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:40.598 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:40.598 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:40.598 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:53:40.598 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:53:40.598 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:53:40.598 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:40.598 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:53:40.598 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:53:40.598 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:40.598 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:53:40.598 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:53:40.598 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:53:40.598 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:53:40.608 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:53:40.618 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:53:40.618 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:53:40.618 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:53:40.618 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:53:40.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28498 150\n [Camera]
17-03-17 23:53:40.818 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:53:41.858 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:53:41.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:53:41.858 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:41.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:53:41.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:53:41.868 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:41.868 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:41.868 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:53:41.868 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:41.868 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:53:42.048 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28498 1422
17-03-17 23:53:42.108 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:53:42.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:53:42.198 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:53:42.248 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 23:53:42.248 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 23:53:42.248 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:42.248 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:53:42.248 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:53:42.248 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:42.248 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:42.248 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:42.248 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:53:42.258 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:53:42.698 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:53:42.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:53:42.708 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:42.708 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:53:42.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:53:42.708 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:42.718 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:42.718 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:53:42.718 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:42.718 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:53:42.898 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:53:42.898 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:53:42.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28498 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall
17-03-17 23:53:42.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:53:42.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.129664156465256. ------
17-03-17 23:53:42.898 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:42.898 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13638 mm
17-03-17 23:53:42.898 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:53:42.908 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:42.908 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:53:42.908 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:53:42.908 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:53:42.908 -07 000000541 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 23:53:42.908 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 29791, sync = True, waitForSettling = False)
17-03-17 23:53:42.908 -07 000000482 INF: Z Motor: Moving to -0.136374 mm, started at -0.129664 mm, distance = -6.71 um
17-03-17 23:53:42.918 -07 000000482 INF: FPGA: Xmit ZDACW 29791\n [Z Motor]
17-03-17 23:53:42.918 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:53:42.928 -07 000000482 INF: FPGA: 'ZDACW 29791' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:53:42.928 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:42.928 -07 000000623 INF: FPGA: Recv YRDPOS 139685
17-03-17 23:53:42.938 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:53:42.938 -07 000000541 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:42.938 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:42.938 -07 000000561 INF: FPGA: Recv ZDACR 29791
17-03-17 23:53:42.938 -07 000000541 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:53:42.938 -07 000000541 INF: Y Motor: Moving 1339 steps-15
17-03-17 23:53:42.948 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:53:42.948 -07 000000482 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 23:53:42.948 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:53:43.108 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:53:43.108 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 23:53:43.118 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:53:43.118 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:53:43.118 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:43.118 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:53:43.118 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:53:43.118 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:43.118 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:43.118 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 23:53:43.118 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:43.128 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 23:53:43.328 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 23:53:43.328 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 384 ms overall
17-03-17 23:53:43.368 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:43.368 -07 000000623 INF: FPGA: Recv YRDPOS 141367
17-03-17 23:53:43.378 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:53:43.378 -07 000000541 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:43.378 -07 000000541 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 23:53:43.378 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.181 mm/sec
17-03-17 23:53:44.328 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:44.328 -07 000000382 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:53:44.338 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:44.338 -07 000000541 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:44.358 -07 000000541 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:53:44.358 -07 000000541 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:53:44.358 -07 000000541 INF: Y Motor: Moved to 69.0273 after 1453 ms (table move)
17-03-17 23:53:44.368 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136374 mm (DAC = 29791)
17-03-17 23:53:44.368 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:44.368 -07 000000382 INF: FPGA: Recv ZSGSRD 30523
17-03-17 23:53:44.378 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:44.378 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:44.378 -07 000000482 INF: FPGA: Recv ZSGSRD 30521
17-03-17 23:53:44.388 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:44.388 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:44.388 -07 000000541 INF: FPGA: Recv ZSGSRD 30524
17-03-17 23:53:44.398 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:44.398 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:44.398 -07 000000415 INF: FPGA: Recv ZSGSRD 30519
17-03-17 23:53:44.408 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:44.408 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:44.408 -07 000000541 INF: FPGA: Recv ZSGSRD 30512
17-03-17 23:53:44.418 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:44.418 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:44.418 -07 000000382 INF: FPGA: Recv ZSGSRD 30517
17-03-17 23:53:44.428 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:44.428 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:44.428 -07 000000382 INF: FPGA: Recv ZSGSRD 30522
17-03-17 23:53:44.438 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:44.438 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:44.438 -07 000000482 INF: FPGA: Recv ZSGSRD 30516
17-03-17 23:53:44.448 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:44.448 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:44.448 -07 000000382 INF: FPGA: Recv ZSGSRD 30524
17-03-17 23:53:44.458 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:44.458 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:44.458 -07 000000382 INF: FPGA: Recv ZSGSRD 30526
17-03-17 23:53:44.468 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:44.468 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:44.468 -07 000000541 INF: FPGA: Recv ZPIEZORD 26296
17-03-17 23:53:44.478 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:44.478 -07 000000462 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -9.3 V.
17-03-17 23:53:44.478 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30520 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30522 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30512 (-135.5 uncal um), Max = 30526 (-135.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:53:44.478 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30520, posNoise = 6, negNoise = 8
17-03-17 23:53:44.478 -07 000000462 INF: Z Motor: After move to -0.136374, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:44.478 -07 000000462 INF: Z Motor: Settle wait time = 1456 ms, measure time = 110 ms (allowed 150 ms), total time = 1566 ms
17-03-17 23:53:44.478 -07 000000462 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:53:44.518 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 23:53:44.518 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:53:44.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:44.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:44.518 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:44.518 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:53:44.518 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:44.518 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:44.518 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:53:44.518 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:53:44.528 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:53:44.528 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:53:44.528 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:53:44.528 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:53:44.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:53:44.578 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:53:44.878 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:53:44.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:53:44.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:53:44.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:53:44.918 -07 000000482 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:53:44.918 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 23:53:44.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-17 23:53:44.948 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.983999,
17-03-17 23:53:44.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:53:44.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:44.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:53:44.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:53:45.018 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:45.018 -07 000000382 INF: Autofocus start
17-03-17 23:53:45.018 -07 000000382 INF: MeasureProfile start
17-03-17 23:53:45.018 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:45.028 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:53:45.028 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:53:45.028 -07 000000382 INF: MeasureProfile done
17-03-17 23:53:45.028 -07 000000382 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:53:45.028 -07 000000382 INF: Autofocus finished
17-03-17 23:53:45.228 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:53:45.228 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:53:45.228 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136390306577679. ----------
17-03-17 23:53:45.228 -07 000000610 INF: Cycle	79	Tile	12	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:53:45.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28316, sync = True, waitForSettling = True)
17-03-17 23:53:45.238 -07 000000610 INF: Z Motor: Moving to -0.129622 mm, started at -0.136390 mm, distance = 6.77 um
17-03-17 23:53:45.238 -07 000000610 INF: FPGA: Xmit ZDACW 28316\n [Z Motor]
17-03-17 23:53:45.238 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:53:45.248 -07 000000610 INF: FPGA: 'ZDACW 28316' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:53:45.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:45.248 -07 000000409 INF: FPGA: Recv ZDACR 28316
17-03-17 23:53:45.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:45.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:53:45.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:45.408 -07 000000482 INF: FPGA: Recv ZSGSRD 29470
17-03-17 23:53:45.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:45.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:45.418 -07 000000409 INF: FPGA: Recv ZSGSRD 29469
17-03-17 23:53:45.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:45.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:45.428 -07 000000415 INF: FPGA: Recv ZSGSRD 29465
17-03-17 23:53:45.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:45.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:45.438 -07 000000409 INF: FPGA: Recv ZSGSRD 29468
17-03-17 23:53:45.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:45.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:45.448 -07 000000415 INF: FPGA: Recv ZSGSRD 29475
17-03-17 23:53:45.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:45.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:45.458 -07 000000382 INF: FPGA: Recv ZSGSRD 29473
17-03-17 23:53:45.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:45.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:45.468 -07 000000415 INF: FPGA: Recv ZSGSRD 29466
17-03-17 23:53:45.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:45.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:45.478 -07 000000382 INF: FPGA: Recv ZSGSRD 29460
17-03-17 23:53:45.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:45.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:45.488 -07 000000415 INF: FPGA: Recv ZSGSRD 29463
17-03-17 23:53:45.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:45.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:45.498 -07 000000382 INF: FPGA: Recv ZSGSRD 29466
17-03-17 23:53:45.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:45.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:45.508 -07 000000415 INF: FPGA: Recv ZPIEZORD 24887
17-03-17 23:53:45.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:45.518 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.321 V. Piezo Error = -10.0 V.
17-03-17 23:53:45.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29468 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29467 (-128.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29460 (-128.8 uncal um), Max = 29475 (-128.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:53:45.518 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29468, posNoise = 7, negNoise = 8
17-03-17 23:53:45.518 -07 000000610 INF: Z Motor: After move to -0.129622, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:45.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:53:45.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:45.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:45.518 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:45.518 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:45.518 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:53:45.518 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:53:45.518 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:53:45.518 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:45.518 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:53:45.518 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:53:45.518 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:45.518 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:53:45.528 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:53:45.528 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:53:45.528 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:53:45.528 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:53:45.538 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:53:45.538 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:53:45.538 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:53:45.538 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:53:45.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28492 150\n [Camera]
17-03-17 23:53:45.748 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:53:46.778 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:53:46.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:53:46.778 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:46.778 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:46.778 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:53:46.788 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:53:46.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:53:46.788 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:46.788 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:46.788 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:53:46.978 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28492 1422
17-03-17 23:53:47.108 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:53:47.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:53:47.128 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:53:47.188 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:53:47.188 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:53:47.188 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:47.188 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:53:47.188 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:53:47.188 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:47.188 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:47.188 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:53:47.198 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:53:47.198 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:53:47.618 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:53:47.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:53:47.628 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:47.628 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:47.628 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:53:47.628 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:53:47.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:53:47.628 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:47.628 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:47.628 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:53:47.818 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:53:47.818 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:53:47.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28492 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:53:47.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:53:47.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129632035404547. ------
17-03-17 23:53:47.818 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:47.818 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13593 mm
17-03-17 23:53:47.818 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:53:47.818 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:53:47.818 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29695, sync = True, waitForSettling = False)
17-03-17 23:53:47.948 -07 000000382 INF: Z Motor: Moving to -0.135935 mm, started at -0.129632 mm, distance = -6.30 um
17-03-17 23:53:47.948 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:47.948 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-17 23:53:47.948 -07 000000382 INF: FPGA: Xmit ZDACW 29695\n [Z Motor]
17-03-17 23:53:47.948 -07 000000415 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 23:53:47.948 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:53:47.958 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:53:47.958 -07 000000382 INF: FPGA: 'ZDACW 29695' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:53:47.968 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:47.968 -07 000000561 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:53:47.978 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:47.978 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:53:47.978 -07 000000415 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:47.978 -07 000000415 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:53:47.978 -07 000000415 INF: Y Motor: Moving 1352 steps-32
17-03-17 23:53:47.978 -07 000000561 INF: FPGA: Recv ZDACR 29695
17-03-17 23:53:47.988 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:53:47.988 -07 000000382 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 23:53:47.988 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:53:48.028 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:53:48.028 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:53:48.028 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:48.028 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:53:48.028 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:53:48.028 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:48.038 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:48.038 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:53:48.038 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:53:48.038 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:53:48.158 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:53:48.158 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-17 23:53:48.358 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 23:53:48.358 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-17 23:53:48.408 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:48.408 -07 000000561 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:53:48.418 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:53:48.418 -07 000000415 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:48.418 -07 000000415 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:53:48.418 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.179 mm/sec
17-03-17 23:53:49.368 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:49.368 -07 000000501 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:53:49.378 -07 000000415 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:49.378 -07 000000415 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:49.408 -07 000000415 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:53:49.408 -07 000000415 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:53:49.408 -07 000000415 INF: Y Motor: Moved to 69.8633 after 1584 ms (table move)
17-03-17 23:53:49.418 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135935 mm (DAC = 29695)
17-03-17 23:53:49.418 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:49.418 -07 000000415 INF: FPGA: Recv ZSGSRD 30452
17-03-17 23:53:49.428 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:49.428 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:49.428 -07 000000475 INF: FPGA: Recv ZSGSRD 30456
17-03-17 23:53:49.438 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:49.438 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:49.438 -07 000000501 INF: FPGA: Recv ZSGSRD 30442
17-03-17 23:53:49.448 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:49.448 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:49.448 -07 000000501 INF: FPGA: Recv ZSGSRD 30444
17-03-17 23:53:49.458 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:49.458 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:49.458 -07 000000475 INF: FPGA: Recv ZSGSRD 30452
17-03-17 23:53:49.468 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:49.468 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:49.468 -07 000000475 INF: FPGA: Recv ZSGSRD 30444
17-03-17 23:53:49.478 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:49.478 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:49.478 -07 000000415 INF: FPGA: Recv ZSGSRD 30452
17-03-17 23:53:49.488 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:49.488 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:49.488 -07 000000475 INF: FPGA: Recv ZSGSRD 30446
17-03-17 23:53:49.498 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:49.498 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:49.498 -07 000000475 INF: FPGA: Recv ZSGSRD 30457
17-03-17 23:53:49.508 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:49.508 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:49.508 -07 000000501 INF: FPGA: Recv ZSGSRD 30451
17-03-17 23:53:49.518 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:49.518 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:49.518 -07 000000415 INF: FPGA: Recv ZPIEZORD 26223
17-03-17 23:53:49.528 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:49.528 -07 000000409 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.531 V. Piezo Error = -9.3 V.
17-03-17 23:53:49.528 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30450 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30452 (-135.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30442 (-135.1 uncal um), Max = 30457 (-135.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:53:49.528 -07 000000409 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30450, posNoise = 7, negNoise = 8
17-03-17 23:53:49.528 -07 000000409 INF: Z Motor: After move to -0.135935, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:49.528 -07 000000409 INF: Z Motor: Settle wait time = 1467 ms, measure time = 110 ms (allowed 150 ms), total time = 1577 ms
17-03-17 23:53:49.528 -07 000000409 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:53:49.568 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1742 ms
17-03-17 23:53:49.568 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:53:49.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:49.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:49.568 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:49.568 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:49.568 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:53:49.568 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:49.568 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:53:49.568 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:53:49.578 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:53:49.578 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:53:49.588 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 23:53:49.588 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:53:49.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:53:49.628 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:53:49.928 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:53:49.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:53:49.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:53:49.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:53:49.968 -07 000000409 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:53:49.968 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 23:53:49.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-17 23:53:50.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:53:50.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:50.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:53:50.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:53:50.168 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:50.168 -07 000000618 INF: Autofocus start
17-03-17 23:53:50.168 -07 000000618 INF: MeasureProfile start
17-03-17 23:53:50.168 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:50.178 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:53:50.178 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:53:50.178 -07 000000618 INF: MeasureProfile done
17-03-17 23:53:50.178 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:53:50.178 -07 000000618 INF: Autofocus finished
17-03-17 23:53:50.318 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.009895,
17-03-17 23:53:50.378 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:53:50.378 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 23:53:50.378 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.135940611727756. ----------
17-03-17 23:53:50.388 -07 000000610 INF: Cycle	79	Tile	13	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:53:50.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28202, sync = True, waitForSettling = True)
17-03-17 23:53:50.388 -07 000000610 INF: Z Motor: Moving to -0.129100 mm, started at -0.135941 mm, distance = 6.84 um
17-03-17 23:53:50.388 -07 000000610 INF: FPGA: Xmit ZDACW 28202\n [Z Motor]
17-03-17 23:53:50.388 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:53:50.398 -07 000000610 INF: FPGA: 'ZDACW 28202' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:53:50.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:50.398 -07 000000448 INF: FPGA: Recv ZDACR 28202
17-03-17 23:53:50.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:50.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:53:50.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:50.558 -07 000000475 INF: FPGA: Recv ZSGSRD 29386
17-03-17 23:53:50.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:50.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:50.568 -07 000000459 INF: FPGA: Recv ZSGSRD 29386
17-03-17 23:53:50.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:50.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:50.578 -07 000000501 INF: FPGA: Recv ZSGSRD 29385
17-03-17 23:53:50.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:50.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:50.588 -07 000000415 INF: FPGA: Recv ZSGSRD 29383
17-03-17 23:53:50.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:50.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:50.598 -07 000000459 INF: FPGA: Recv ZSGSRD 29388
17-03-17 23:53:50.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:50.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:50.608 -07 000000448 INF: FPGA: Recv ZSGSRD 29387
17-03-17 23:53:50.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:50.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:50.618 -07 000000415 INF: FPGA: Recv ZSGSRD 29387
17-03-17 23:53:50.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:50.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:50.628 -07 000000409 INF: FPGA: Recv ZSGSRD 29389
17-03-17 23:53:50.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:50.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:50.638 -07 000000501 INF: FPGA: Recv ZSGSRD 29382
17-03-17 23:53:50.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:50.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:50.648 -07 000000618 INF: FPGA: Recv ZSGSRD 29383
17-03-17 23:53:50.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:50.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:50.658 -07 000000459 INF: FPGA: Recv ZPIEZORD 24772
17-03-17 23:53:50.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:50.668 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -10.1 V.
17-03-17 23:53:50.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29386 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29386 (-128.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29382 (-128.3 uncal um), Max = 29389 (-128.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:53:50.668 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29386, posNoise = 3, negNoise = 4
17-03-17 23:53:50.668 -07 000000610 INF: Z Motor: After move to -0.129100, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:50.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:53:50.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:50.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:50.668 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:50.668 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:50.668 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:53:50.668 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:50.668 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:53:50.668 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:53:50.668 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:50.668 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:53:50.668 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:53:50.668 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:53:50.678 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:53:50.678 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:53:50.678 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:53:50.678 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:53:50.688 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:53:50.688 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:53:50.688 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:53:50.688 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:53:50.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28379 150\n [Camera]
17-03-17 23:53:50.898 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:53:51.928 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:53:51.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:53:51.928 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:51.938 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:53:51.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:53:51.938 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:51.938 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:51.938 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:53:51.938 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:51.938 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:53:52.108 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:53:52.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:53:52.128 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28379 1422
17-03-17 23:53:52.278 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:53:52.338 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:53:52.338 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:53:52.338 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:52.338 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:53:52.338 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:53:52.338 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:52.338 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:52.338 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:53:52.338 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:52.348 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:53:52.778 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:53:52.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:53:52.778 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:52.778 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:52.778 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:53:52.778 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:53:52.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:53:52.778 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:52.778 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:52.778 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:53:52.968 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:53:52.968 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:53:52.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28379 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:53:52.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:53:52.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129105250008922. ------
17-03-17 23:53:53.078 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13544 mm
17-03-17 23:53:53.078 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:53:53.078 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:53.088 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29587, sync = True, waitForSettling = False)
17-03-17 23:53:53.088 -07 000000618 INF: Z Motor: Moving to -0.135441 mm, started at -0.129105 mm, distance = -6.34 um
17-03-17 23:53:53.088 -07 000000618 INF: FPGA: Xmit ZDACW 29587\n [Z Motor]
17-03-17 23:53:53.088 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:53:53.088 -07 000000409 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 23:53:53.088 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:53.088 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 23:53:53.088 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:53:53.098 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:53:53.098 -07 000000618 INF: FPGA: 'ZDACW 29587' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:53:53.108 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:53.108 -07 000000478 INF: FPGA: Recv YRDPOS 143081
17-03-17 23:53:53.118 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:53.118 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:53:53.118 -07 000000409 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:53.118 -07 000000478 INF: FPGA: Recv ZDACR 29587
17-03-17 23:53:53.118 -07 000000409 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:53:53.118 -07 000000409 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:53:53.128 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:53:53.128 -07 000000618 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 23:53:53.128 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:53:53.168 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 23:53:53.168 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:53:53.168 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:53.168 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:53:53.168 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:53:53.168 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:53.178 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:53.178 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:53:53.178 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:53:53.178 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:53:53.298 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:53:53.298 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 206 ms overall
17-03-17 23:53:53.498 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 23:53:53.498 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 23:53:53.538 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:54.158 -07 000000551 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:53:54.158 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 600 ms to get response, and 610 ms overall
17-03-17 23:53:54.158 -07 000000409 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:54.158 -07 000000409 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:53:54.158 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.839 mm, average velocity = 2.186 mm/sec
17-03-17 23:53:55.108 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:55.108 -07 000000459 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:53:55.118 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:55.118 -07 000000409 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:55.138 -07 000000409 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:53:55.138 -07 000000409 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:53:55.138 -07 000000409 INF: Y Motor: Moved to 70.6885 after 2054 ms (table move)
17-03-17 23:53:55.148 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135441 mm (DAC = 29587)
17-03-17 23:53:55.148 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:55.148 -07 000000501 INF: FPGA: Recv ZSGSRD 30380
17-03-17 23:53:55.158 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:55.158 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:55.158 -07 000000459 INF: FPGA: Recv ZSGSRD 30372
17-03-17 23:53:55.168 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:55.168 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:55.168 -07 000000475 INF: FPGA: Recv ZSGSRD 30376
17-03-17 23:53:55.178 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:55.178 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:55.178 -07 000000501 INF: FPGA: Recv ZSGSRD 30367
17-03-17 23:53:55.188 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:55.188 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:55.188 -07 000000482 INF: FPGA: Recv ZSGSRD 30374
17-03-17 23:53:55.198 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:55.198 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:55.198 -07 000000448 INF: FPGA: Recv ZSGSRD 30375
17-03-17 23:53:55.208 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:55.208 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:55.208 -07 000000415 INF: FPGA: Recv ZSGSRD 30373
17-03-17 23:53:55.218 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:55.218 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:55.218 -07 000000459 INF: FPGA: Recv ZSGSRD 30378
17-03-17 23:53:55.228 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:53:55.228 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:55.228 -07 000000551 INF: FPGA: Recv ZSGSRD 30370
17-03-17 23:53:55.238 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:55.238 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:55.238 -07 000000409 INF: FPGA: Recv ZSGSRD 30370
17-03-17 23:53:55.248 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:55.248 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:55.248 -07 000000415 INF: FPGA: Recv ZPIEZORD 26119
17-03-17 23:53:55.258 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:55.258 -07 000000502 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.515 V. Piezo Error = -9.3 V.
17-03-17 23:53:55.258 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30374 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30374 (-134.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30367 (-134.6 uncal um), Max = 30380 (-134.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:53:55.258 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30374, posNoise = 6, negNoise = 7
17-03-17 23:53:55.258 -07 000000502 INF: Z Motor: After move to -0.135441, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:55.258 -07 000000502 INF: Z Motor: Settle wait time = 2058 ms, measure time = 112 ms (allowed 150 ms), total time = 2170 ms
17-03-17 23:53:55.258 -07 000000502 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 23:53:55.298 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2211 ms
17-03-17 23:53:55.298 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:53:55.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:55.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:55.298 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:55.298 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:55.298 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:53:55.298 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:55.298 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:55.298 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:53:55.308 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:53:55.308 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:53:55.318 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:53:55.318 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:53:55.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:53:55.368 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:53:55.668 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:53:55.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:53:55.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:53:55.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:53:55.688 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.994908,
17-03-17 23:53:55.708 -07 000000409 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:53:55.708 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 23:53:55.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-17 23:53:55.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:53:55.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:55.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:53:55.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:53:55.808 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:55.808 -07 000000415 INF: Autofocus start
17-03-17 23:53:55.808 -07 000000415 INF: MeasureProfile start
17-03-17 23:53:55.808 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:55.818 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:53:55.818 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:53:55.818 -07 000000415 INF: MeasureProfile done
17-03-17 23:53:55.818 -07 000000415 INF: X=-64  Z correction [um]=-0.3149434
17-03-17 23:53:55.818 -07 000000415 INF: Autofocus finished
17-03-17 23:53:56.018 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:53:56.018 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:53:56.018 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135452371604982. ----------
17-03-17 23:53:56.018 -07 000000610 INF: Cycle	79	Tile	14	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:53:56.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28031, sync = True, waitForSettling = True)
17-03-17 23:53:56.028 -07 000000610 INF: Z Motor: Moving to -0.128318 mm, started at -0.135452 mm, distance = 7.13 um
17-03-17 23:53:56.028 -07 000000610 INF: FPGA: Xmit ZDACW 28031\n [Z Motor]
17-03-17 23:53:56.028 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:53:56.038 -07 000000610 INF: FPGA: 'ZDACW 28031' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:56.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:56.038 -07 000000459 INF: FPGA: Recv ZDACR 28031
17-03-17 23:53:56.048 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:56.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:53:56.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:56.198 -07 000000482 INF: FPGA: Recv ZSGSRD 29264
17-03-17 23:53:56.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:56.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:56.208 -07 000000415 INF: FPGA: Recv ZSGSRD 29267
17-03-17 23:53:56.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:56.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:56.218 -07 000000448 INF: FPGA: Recv ZSGSRD 29267
17-03-17 23:53:56.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:56.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:56.228 -07 000000409 INF: FPGA: Recv ZSGSRD 29261
17-03-17 23:53:56.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:56.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:56.238 -07 000000448 INF: FPGA: Recv ZSGSRD 29271
17-03-17 23:53:56.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:56.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:56.248 -07 000000482 INF: FPGA: Recv ZSGSRD 29266
17-03-17 23:53:56.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:56.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:56.258 -07 000000475 INF: FPGA: Recv ZSGSRD 29259
17-03-17 23:53:56.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:56.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:56.268 -07 000000482 INF: FPGA: Recv ZSGSRD 29268
17-03-17 23:53:56.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:56.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:56.278 -07 000000551 INF: FPGA: Recv ZSGSRD 29268
17-03-17 23:53:56.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:56.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:53:56.288 -07 000000448 INF: FPGA: Recv ZSGSRD 29261
17-03-17 23:53:56.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:56.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:53:56.298 -07 000000475 INF: FPGA: Recv ZPIEZORD 24644
17-03-17 23:53:56.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:53:56.308 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.277 V. Piezo Error = -10.1 V.
17-03-17 23:53:56.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29265 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29266 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29259 (-127.5 uncal um), Max = 29271 (-127.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:53:56.308 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29265, posNoise = 6, negNoise = 6
17-03-17 23:53:56.308 -07 000000610 INF: Z Motor: After move to -0.128318, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:53:56.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:53:56.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:53:56.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:53:56.308 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:53:56.308 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:53:56.308 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:53:56.308 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:53:56.308 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:53:56.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:53:56.308 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:53:56.308 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:53:56.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:53:56.308 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:53:56.318 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:53:56.318 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:53:56.318 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:53:56.318 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:53:56.328 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:53:56.328 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:53:56.328 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:53:56.328 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:53:56.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28207 150\n [Camera]
17-03-17 23:53:56.528 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:53:57.108 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:53:57.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:53:57.568 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:53:57.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:53:57.568 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:57.578 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:53:57.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:53:57.578 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:57.578 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:57.578 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:53:57.578 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:57.578 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:53:57.758 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28207 1422
17-03-17 23:53:57.908 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:53:57.968 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:53:57.968 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:53:57.968 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:57.978 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:53:57.978 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:53:57.978 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:57.978 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:57.978 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:53:57.978 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:57.988 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:53:58.408 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:53:58.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:53:58.418 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:53:58.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:53:58.418 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:53:58.418 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:53:58.428 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:53:58.428 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:53:58.428 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:53:58.428 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:53:58.608 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:53:58.608 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:53:58.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28207 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:53:58.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:53:58.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128327920339769. ------
17-03-17 23:53:58.618 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:53:58.618 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13502 mm
17-03-17 23:53:58.618 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:53:58.618 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:53:58.618 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:53:58.618 -07 000000502 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 23:53:58.618 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 29496, sync = True, waitForSettling = False)
17-03-17 23:53:58.618 -07 000000459 INF: Z Motor: Moving to -0.135024 mm, started at -0.128328 mm, distance = -6.70 um
17-03-17 23:53:58.628 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:53:58.628 -07 000000459 INF: FPGA: Xmit ZDACW 29496\n [Z Motor]
17-03-17 23:53:58.628 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:53:58.638 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:58.638 -07 000000459 INF: FPGA: 'ZDACW 29496' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:53:58.638 -07 000000409 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:53:58.648 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:53:58.648 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 23:53:58.648 -07 000000502 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:58.648 -07 000000502 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:53:58.648 -07 000000502 INF: Y Motor: Moving 1351 steps-29
17-03-17 23:53:58.658 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:53:58.658 -07 000000501 INF: FPGA: Recv ZDACR 29496
17-03-17 23:53:58.668 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:53:58.668 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:53:58.668 -07 000000459 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 23:53:58.808 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:53:58.808 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:53:58.808 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:58.808 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:58.808 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:53:58.808 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:53:58.808 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:53:58.818 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:53:58.818 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:53:58.818 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:53:58.848 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:53:58.848 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 23:53:59.038 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 23:53:59.038 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 23:53:59.088 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:53:59.088 -07 000000475 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:53:59.098 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:53:59.098 -07 000000502 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:53:59.098 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:53:59.098 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.142 mm/sec
17-03-17 23:54:00.048 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:54:00.048 -07 000000475 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:54:00.058 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:54:00.058 -07 000000502 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:54:00.078 -07 000000502 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:54:00.078 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:54:00.078 -07 000000502 INF: Y Motor: Moved to 71.5190 after 1460 ms (table move)
17-03-17 23:54:00.088 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135024 mm (DAC = 29496)
17-03-17 23:54:00.088 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:00.088 -07 000000409 INF: FPGA: Recv ZSGSRD 30311
17-03-17 23:54:00.098 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:00.098 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:00.098 -07 000000502 INF: FPGA: Recv ZSGSRD 30302
17-03-17 23:54:00.108 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:00.108 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:00.108 -07 000000541 INF: FPGA: Recv ZSGSRD 30305
17-03-17 23:54:00.118 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:00.118 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:00.118 -07 000000448 INF: FPGA: Recv ZSGSRD 30307
17-03-17 23:54:00.128 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:00.128 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:00.128 -07 000000502 INF: FPGA: Recv ZSGSRD 30312
17-03-17 23:54:00.138 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:00.138 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:00.138 -07 000000561 INF: FPGA: Recv ZSGSRD 30314
17-03-17 23:54:00.148 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:00.148 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:00.148 -07 000000415 INF: FPGA: Recv ZSGSRD 30311
17-03-17 23:54:00.158 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:00.158 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:00.158 -07 000000561 INF: FPGA: Recv ZSGSRD 30304
17-03-17 23:54:00.168 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:00.168 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:00.168 -07 000000415 INF: FPGA: Recv ZSGSRD 30305
17-03-17 23:54:00.178 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:00.178 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:00.178 -07 000000551 INF: FPGA: Recv ZSGSRD 30303
17-03-17 23:54:00.188 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:00.188 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:54:00.188 -07 000000462 INF: FPGA: Recv ZPIEZORD 26087
17-03-17 23:54:00.198 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:00.198 -07 000000482 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -9.3 V.
17-03-17 23:54:00.198 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30307 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30306 (-134.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30302 (-134.2 uncal um), Max = 30314 (-134.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:54:00.198 -07 000000482 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30307, posNoise = 7, negNoise = 5
17-03-17 23:54:00.198 -07 000000482 INF: Z Motor: After move to -0.135024, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:54:00.198 -07 000000482 INF: Z Motor: Settle wait time = 1463 ms, measure time = 109 ms (allowed 150 ms), total time = 1572 ms
17-03-17 23:54:00.198 -07 000000482 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:54:00.248 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-17 23:54:00.248 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:54:00.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:54:00.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:54:00.248 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:54:00.248 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:54:00.248 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:54:00.248 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:54:00.258 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:54:00.258 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:54:00.258 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:54:00.258 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:54:00.268 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 23:54:00.268 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:54:00.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:54:00.318 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:54:00.618 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:54:00.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:54:00.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:54:00.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:54:00.648 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:54:00.658 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 23:54:00.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-17 23:54:00.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 23:54:00.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:00.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:54:00.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:54:00.758 -07 000000502 INF: Autofocus start
17-03-17 23:54:00.758 -07 000000502 INF: MeasureProfile start
17-03-17 23:54:00.768 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:54:00.768 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:54:00.768 -07 000000502 INF: MeasureProfile done
17-03-17 23:54:00.768 -07 000000502 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:54:00.768 -07 000000502 INF: Autofocus finished
17-03-17 23:54:00.778 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:54:00.798 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:54:00.998 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:54:00.998 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 23:54:00.998 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135021949391484. ----------
17-03-17 23:54:01.008 -07 000000610 INF: Cycle	79	Tile	15	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:54:01.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27991, sync = True, waitForSettling = True)
17-03-17 23:54:01.008 -07 000000610 INF: Z Motor: Moving to -0.128135 mm, started at -0.135022 mm, distance = 6.89 um
17-03-17 23:54:01.008 -07 000000610 INF: FPGA: Xmit ZDACW 27991\n [Z Motor]
17-03-17 23:54:01.008 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:54:01.018 -07 000000610 INF: FPGA: 'ZDACW 27991' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:54:01.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:54:01.018 -07 000000409 INF: FPGA: Recv ZDACR 27991
17-03-17 23:54:01.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:01.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:54:01.058 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.999021,
17-03-17 23:54:01.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:01.178 -07 000000502 INF: FPGA: Recv ZSGSRD 29235
17-03-17 23:54:01.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:54:01.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:01.188 -07 000000541 INF: FPGA: Recv ZSGSRD 29233
17-03-17 23:54:01.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:01.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:01.198 -07 000000409 INF: FPGA: Recv ZSGSRD 29233
17-03-17 23:54:01.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:01.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:01.208 -07 000000462 INF: FPGA: Recv ZSGSRD 29237
17-03-17 23:54:01.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:01.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:01.218 -07 000000409 INF: FPGA: Recv ZSGSRD 29241
17-03-17 23:54:01.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:01.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:01.228 -07 000000541 INF: FPGA: Recv ZSGSRD 29232
17-03-17 23:54:01.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:01.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:01.238 -07 000000541 INF: FPGA: Recv ZSGSRD 29236
17-03-17 23:54:01.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:01.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:01.248 -07 000000541 INF: FPGA: Recv ZSGSRD 29242
17-03-17 23:54:01.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:01.258 -07 000000502 INF: FPGA: Recv ZSGSRD 29237
17-03-17 23:54:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:01.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:01.268 -07 000000541 INF: FPGA: Recv ZSGSRD 29233
17-03-17 23:54:01.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:01.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:54:01.278 -07 000000502 INF: FPGA: Recv ZPIEZORD 24625
17-03-17 23:54:01.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:01.288 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -10.1 V.
17-03-17 23:54:01.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29236 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29236 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29232 (-127.3 uncal um), Max = 29242 (-127.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:54:01.288 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29236, posNoise = 6, negNoise = 4
17-03-17 23:54:01.288 -07 000000610 INF: Z Motor: After move to -0.128135, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:54:01.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:54:01.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:54:01.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:54:01.288 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:54:01.288 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:54:01.288 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:54:01.288 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:54:01.288 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:54:01.288 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:54:01.288 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:54:01.288 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:54:01.288 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:54:01.288 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:54:01.298 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:54:01.298 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:54:01.298 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:54:01.298 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:54:01.308 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:54:01.308 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:54:01.308 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:54:01.308 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:54:01.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28168 150\n [Camera]
17-03-17 23:54:01.518 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:54:02.108 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:54:02.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:54:02.548 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:54:02.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:54:02.548 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:54:02.548 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:54:02.548 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:54:02.558 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:54:02.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:54:02.558 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:54:02.558 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:54:02.558 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:54:02.748 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28168 1422
17-03-17 23:54:02.898 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:54:02.948 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:54:02.958 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:54:02.958 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:02.958 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:54:02.958 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:54:02.958 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:02.958 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:54:02.958 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:54:02.958 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:54:02.968 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:54:03.398 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:54:03.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:54:03.398 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:54:03.398 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:54:03.398 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:54:03.398 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:54:03.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:54:03.398 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:54:03.398 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:54:03.398 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:54:03.588 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:54:03.588 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:54:03.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28168 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:54:03.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:54:03.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128141618187658. ------
17-03-17 23:54:03.718 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:54:03.718 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13452 mm
17-03-17 23:54:03.718 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:54:03.718 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:54:03.718 -07 000000623 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 23:54:03.718 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:54:03.718 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29385, sync = True, waitForSettling = False)
17-03-17 23:54:03.718 -07 000000547 INF: Z Motor: Moving to -0.134516 mm, started at -0.128142 mm, distance = -6.37 um
17-03-17 23:54:03.728 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:54:03.728 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:54:03.728 -07 000000478 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:54:03.738 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:54:03.738 -07 000000623 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:54:03.738 -07 000000623 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:54:03.738 -07 000000623 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:54:03.738 -07 000000547 INF: FPGA: Xmit ZDACW 29385\n [Z Motor]
17-03-17 23:54:03.738 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:54:03.748 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:54:03.748 -07 000000547 INF: FPGA: 'ZDACW 29385' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 23:54:03.758 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:54:03.768 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:54:03.768 -07 000000478 INF: FPGA: Recv ZDACR 29385
17-03-17 23:54:03.778 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:54:03.778 -07 000000547 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 23:54:03.798 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:54:03.798 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:54:03.798 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:54:03.798 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:03.798 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:54:03.798 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:03.808 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:54:03.808 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:54:03.808 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:54:03.808 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:54:03.948 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:54:03.948 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:54:04.128 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 23:54:04.128 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:54:04.178 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:54:04.178 -07 000000459 INF: FPGA: Recv YRDPOS 148172
17-03-17 23:54:04.188 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:04.188 -07 000000623 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:54:04.188 -07 000000623 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 23:54:04.188 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 23:54:05.138 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:54:05.138 -07 000000618 INF: FPGA: Recv YRDPOS 148172
17-03-17 23:54:05.148 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:54:05.148 -07 000000623 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:54:05.168 -07 000000623 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:54:05.168 -07 000000623 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:54:05.168 -07 000000623 INF: Y Motor: Moved to 72.3496 after 1452 ms (table move)
17-03-17 23:54:05.178 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134516 mm (DAC = 29385)
17-03-17 23:54:05.178 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:05.178 -07 000000541 INF: FPGA: Recv ZSGSRD 30227
17-03-17 23:54:05.188 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:54:05.188 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:05.188 -07 000000459 INF: FPGA: Recv ZSGSRD 30225
17-03-17 23:54:05.198 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:05.198 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:05.198 -07 000000478 INF: FPGA: Recv ZSGSRD 30230
17-03-17 23:54:05.208 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:05.208 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:05.208 -07 000000459 INF: FPGA: Recv ZSGSRD 30231
17-03-17 23:54:05.218 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:05.218 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:05.218 -07 000000618 INF: FPGA: Recv ZSGSRD 30231
17-03-17 23:54:05.228 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:05.228 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:05.228 -07 000000459 INF: FPGA: Recv ZSGSRD 30229
17-03-17 23:54:05.238 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:05.238 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:05.238 -07 000000478 INF: FPGA: Recv ZSGSRD 30223
17-03-17 23:54:05.248 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:05.248 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:05.248 -07 000000429 INF: FPGA: Recv ZSGSRD 30229
17-03-17 23:54:05.258 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:05.258 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:05.258 -07 000000618 INF: FPGA: Recv ZSGSRD 30230
17-03-17 23:54:05.268 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:05.268 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:05.268 -07 000000429 INF: FPGA: Recv ZSGSRD 30226
17-03-17 23:54:05.278 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:05.278 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:54:05.278 -07 000000478 INF: FPGA: Recv ZPIEZORD 25980
17-03-17 23:54:05.288 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:05.288 -07 000000502 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.484 V. Piezo Error = -9.3 V.
17-03-17 23:54:05.288 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30228 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30229 (-133.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30223 (-133.7 uncal um), Max = 30231 (-133.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:54:05.288 -07 000000502 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30228, posNoise = 3, negNoise = 5
17-03-17 23:54:05.288 -07 000000502 INF: Z Motor: After move to -0.134516, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:54:05.288 -07 000000502 INF: Z Motor: Settle wait time = 1454 ms, measure time = 111 ms (allowed 150 ms), total time = 1565 ms
17-03-17 23:54:05.288 -07 000000502 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:54:05.328 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 23:54:05.328 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:54:05.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:54:05.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:54:05.328 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:54:05.328 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:54:05.328 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:54:05.328 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:54:05.328 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:54:05.328 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:54:05.338 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:54:05.338 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:54:05.348 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:54:05.348 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 23:54:05.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:54:05.398 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:54:05.698 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:54:05.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:54:05.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:54:05.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:54:05.738 -07 000000429 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:54:05.738 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 23:54:05.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-17 23:54:05.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:54:05.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:05.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:54:05.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:54:05.838 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:54:05.838 -07 000000459 INF: Autofocus start
17-03-17 23:54:05.838 -07 000000459 INF: MeasureProfile start
17-03-17 23:54:05.848 -07 000000459 INF: MeasureProfile done
17-03-17 23:54:05.848 -07 000000459 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:54:05.848 -07 000000459 INF: Autofocus finished
17-03-17 23:54:06.718 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:54:06.718 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 870 ms to get response, and 877 ms overall
17-03-17 23:54:06.738 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:54:06.938 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:54:06.938 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 23:54:06.938 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.134514436632285. ----------
17-03-17 23:54:06.938 -07 000000610 INF: Cycle	79	Tile	16	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:54:06.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27880, sync = True, waitForSettling = True)
17-03-17 23:54:06.938 -07 000000610 INF: Z Motor: Moving to -0.127626 mm, started at -0.134514 mm, distance = 6.89 um
17-03-17 23:54:06.938 -07 000000610 INF: FPGA: Xmit ZDACW 27880\n [Z Motor]
17-03-17 23:54:06.948 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:54:06.958 -07 000000610 INF: FPGA: 'ZDACW 27880' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:54:06.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:54:06.958 -07 000000623 INF: FPGA: Recv ZDACR 27880
17-03-17 23:54:06.968 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:06.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:54:07.028 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.989471,
17-03-17 23:54:07.108 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:54:07.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:54:07.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:07.118 -07 000000482 INF: FPGA: Recv ZSGSRD 29157
17-03-17 23:54:07.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:54:07.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:07.128 -07 000000409 INF: FPGA: Recv ZSGSRD 29157
17-03-17 23:54:07.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:07.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:07.138 -07 000000482 INF: FPGA: Recv ZSGSRD 29160
17-03-17 23:54:07.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:07.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:07.148 -07 000000478 INF: FPGA: Recv ZSGSRD 29157
17-03-17 23:54:07.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:07.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:07.158 -07 000000623 INF: FPGA: Recv ZSGSRD 29157
17-03-17 23:54:07.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:07.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:07.168 -07 000000409 INF: FPGA: Recv ZSGSRD 29161
17-03-17 23:54:07.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:07.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:07.178 -07 000000623 INF: FPGA: Recv ZSGSRD 29154
17-03-17 23:54:07.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:07.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:07.188 -07 000000478 INF: FPGA: Recv ZSGSRD 29156
17-03-17 23:54:07.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:07.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:07.198 -07 000000541 INF: FPGA: Recv ZSGSRD 29157
17-03-17 23:54:07.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:07.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:07.208 -07 000000541 INF: FPGA: Recv ZSGSRD 29153
17-03-17 23:54:07.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:07.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:54:07.218 -07 000000409 INF: FPGA: Recv ZPIEZORD 24565
17-03-17 23:54:07.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:07.228 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.254 V. Piezo Error = -10.1 V.
17-03-17 23:54:07.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29157 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29157 (-126.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29153 (-126.8 uncal um), Max = 29161 (-126.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:54:07.228 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29157, posNoise = 4, negNoise = 4
17-03-17 23:54:07.228 -07 000000610 INF: Z Motor: After move to -0.127626, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:54:07.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:54:07.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:54:07.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:54:07.228 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:54:07.228 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:54:07.228 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:54:07.228 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:54:07.228 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:54:07.228 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:54:07.228 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:54:07.228 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:54:07.228 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:54:07.228 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:54:07.238 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:54:07.238 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:54:07.238 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:54:07.238 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:54:07.248 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:54:07.248 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:54:07.248 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:54:07.248 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:54:07.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28057 150\n [Camera]
17-03-17 23:54:07.448 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:54:08.488 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:54:08.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:54:08.498 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:54:08.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:54:08.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:54:08.498 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:54:08.498 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:54:08.498 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:54:08.498 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:54:08.498 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:54:08.688 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28057 1422
17-03-17 23:54:08.828 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:54:08.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:54:08.888 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:54:08.888 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:08.898 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 23:54:08.898 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:54:08.898 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:08.898 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:54:08.898 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:54:08.898 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:54:08.908 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:54:09.338 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:54:09.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:54:09.338 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:54:09.338 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:54:09.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:54:09.338 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:54:09.338 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:54:09.338 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:54:09.338 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:54:09.338 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:54:09.528 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-17 23:54:09.528 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:54:09.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28057 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:54:09.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:54:09.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.127634105428459. ------
17-03-17 23:54:09.528 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:54:09.528 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13421 mm
17-03-17 23:54:09.528 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:54:09.528 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:54:09.538 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:54:09.538 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:54:09.538 -07 000000482 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 23:54:09.538 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:54:09.538 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29319, sync = True, waitForSettling = False)
17-03-17 23:54:09.538 -07 000000623 INF: Z Motor: Moving to -0.134214 mm, started at -0.127634 mm, distance = -6.58 um
17-03-17 23:54:09.538 -07 000000475 INF: FPGA: Recv YRDPOS 148173
17-03-17 23:54:09.648 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:54:09.648 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 115 ms overall
17-03-17 23:54:09.648 -07 000000482 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:54:09.658 -07 000000623 INF: FPGA: Xmit ZDACW 29319\n [Z Motor]
17-03-17 23:54:09.658 -07 000000482 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:54:09.658 -07 000000482 INF: Y Motor: Moving 1348 steps-27
17-03-17 23:54:09.658 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 23:54:09.668 -07 000000623 INF: FPGA: 'ZDACW 29319' command took 0 ms to send, 0 ms to get response, and 128 ms overall
17-03-17 23:54:09.668 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:54:09.668 -07 000000561 INF: FPGA: Recv ZDACR 29319
17-03-17 23:54:09.678 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:09.678 -07 000000623 INF: Z Motor: MoveAbsStepped took 139 ms (did NOT wait for settling yet))
17-03-17 23:54:09.678 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:54:09.728 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:54:09.728 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:54:09.728 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:09.728 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:54:09.728 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:54:09.728 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:09.738 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:54:09.738 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:54:09.738 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:54:09.738 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:54:09.848 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:54:09.848 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 318 ms overall
17-03-17 23:54:10.048 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 23:54:10.048 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 23:54:10.098 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:54:10.098 -07 000000561 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:54:10.108 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:54:10.108 -07 000000482 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:54:10.108 -07 000000482 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 23:54:10.108 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.843 mm, average velocity = 2.129 mm/sec
17-03-17 23:54:11.058 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:54:11.058 -07 000000551 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:54:11.068 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:54:11.068 -07 000000482 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:54:11.088 -07 000000482 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:54:11.088 -07 000000482 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:54:11.088 -07 000000482 INF: Y Motor: Moved to 73.1763 after 1556 ms (table move)
17-03-17 23:54:11.098 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134214 mm (DAC = 29319)
17-03-17 23:54:11.098 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:11.098 -07 000000475 INF: FPGA: Recv ZSGSRD 30175
17-03-17 23:54:11.108 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:11.108 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:11.108 -07 000000475 INF: FPGA: Recv ZSGSRD 30178
17-03-17 23:54:11.118 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:11.118 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:11.118 -07 000000475 INF: FPGA: Recv ZSGSRD 30185
17-03-17 23:54:11.128 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:11.128 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:11.128 -07 000000475 INF: FPGA: Recv ZSGSRD 30181
17-03-17 23:54:11.138 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:11.138 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:11.138 -07 000000415 INF: FPGA: Recv ZSGSRD 30190
17-03-17 23:54:11.148 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:11.148 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:11.148 -07 000000415 INF: FPGA: Recv ZSGSRD 30187
17-03-17 23:54:11.158 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:11.158 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:11.158 -07 000000475 INF: FPGA: Recv ZSGSRD 30181
17-03-17 23:54:11.168 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:11.168 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:11.168 -07 000000475 INF: FPGA: Recv ZSGSRD 30184
17-03-17 23:54:11.178 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:11.178 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:11.178 -07 000000551 INF: FPGA: Recv ZSGSRD 30174
17-03-17 23:54:11.188 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:11.188 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:11.188 -07 000000475 INF: FPGA: Recv ZSGSRD 30179
17-03-17 23:54:11.198 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:11.198 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:54:11.198 -07 000000475 INF: FPGA: Recv ZPIEZORD 25954
17-03-17 23:54:11.208 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:11.208 -07 000000409 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.474 V. Piezo Error = -9.3 V.
17-03-17 23:54:11.208 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.2 um, Read 10 ADC samples: Avg = 30181 (-133.4 uncal um), Error = 0.8 uncal um, Median = 30181 (-133.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30174 (-133.4 uncal um), Max = 30190 (-133.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:54:11.208 -07 000000409 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30181, posNoise = 9, negNoise = 7
17-03-17 23:54:11.208 -07 000000409 INF: Z Motor: After move to -0.134214, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:54:11.208 -07 000000409 INF: Z Motor: Settle wait time = 1559 ms, measure time = 110 ms (allowed 150 ms), total time = 1669 ms
17-03-17 23:54:11.208 -07 000000409 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:54:11.248 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1712 ms
17-03-17 23:54:11.248 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:54:11.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:54:11.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:54:11.248 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:54:11.248 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:54:11.248 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:54:11.248 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:54:11.248 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:54:11.248 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:54:11.258 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:54:11.258 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:54:11.268 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:54:11.268 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:54:11.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:54:11.318 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:54:11.618 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:54:11.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:54:11.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:54:11.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:54:11.658 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:54:11.658 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 23:54:11.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-17 23:54:11.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:54:11.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:11.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:54:11.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:54:11.758 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:54:11.758 -07 000000478 INF: Autofocus start
17-03-17 23:54:11.758 -07 000000478 INF: MeasureProfile start
17-03-17 23:54:11.758 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:54:11.768 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:54:11.768 -07 000000478 INF: MeasureProfile done
17-03-17 23:54:11.768 -07 000000478 INF: X=-7  Z correction [um]=-0.03747771
17-03-17 23:54:11.768 -07 000000478 INF: Autofocus finished
17-03-17 23:54:11.778 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:54:12.338 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:54:12.338 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:54:12.338 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 551 ms to get response, and 571 ms overall
17-03-17 23:54:12.338 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:54:12.338 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134212498661622. ----------
17-03-17 23:54:12.348 -07 000000610 INF: Cycle	79	Tile	17	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:54:12.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27823, sync = True, waitForSettling = True)
17-03-17 23:54:12.348 -07 000000610 INF: Z Motor: Moving to -0.127366 mm, started at -0.134212 mm, distance = 6.85 um
17-03-17 23:54:12.348 -07 000000610 INF: FPGA: Xmit ZDACW 27823\n [Z Motor]
17-03-17 23:54:12.348 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:54:12.358 -07 000000610 INF: FPGA: 'ZDACW 27823' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:54:12.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:54:12.358 -07 000000415 INF: FPGA: Recv ZDACR 27823
17-03-17 23:54:12.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:12.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:54:12.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:12.518 -07 000000382 INF: FPGA: Recv ZSGSRD 29113
17-03-17 23:54:12.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:54:12.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:12.528 -07 000000512 INF: FPGA: Recv ZSGSRD 29120
17-03-17 23:54:12.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:12.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:12.538 -07 000000448 INF: FPGA: Recv ZSGSRD 29116
17-03-17 23:54:12.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:12.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:12.548 -07 000000561 INF: FPGA: Recv ZSGSRD 29108
17-03-17 23:54:12.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:12.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:12.558 -07 000000415 INF: FPGA: Recv ZSGSRD 29123
17-03-17 23:54:12.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:12.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:12.568 -07 000000382 INF: FPGA: Recv ZSGSRD 29112
17-03-17 23:54:12.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:12.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:12.578 -07 000000415 INF: FPGA: Recv ZSGSRD 29121
17-03-17 23:54:12.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:12.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:12.588 -07 000000541 INF: FPGA: Recv ZSGSRD 29117
17-03-17 23:54:12.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:12.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:12.598 -07 000000415 INF: FPGA: Recv ZSGSRD 29116
17-03-17 23:54:12.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:12.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:12.608 -07 000000512 INF: FPGA: Recv ZSGSRD 29121
17-03-17 23:54:12.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:54:12.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:54:12.618 -07 000000382 INF: FPGA: Recv ZPIEZORD 24513
17-03-17 23:54:12.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:12.628 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.246 V. Piezo Error = -10.1 V.
17-03-17 23:54:12.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29117 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29116 (-126.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29108 (-126.5 uncal um), Max = 29123 (-126.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:54:12.628 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29117, posNoise = 6, negNoise = 9
17-03-17 23:54:12.628 -07 000000610 INF: Z Motor: After move to -0.127366, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:54:12.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:54:12.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:54:12.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:54:12.628 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:54:12.628 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:54:12.628 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:54:12.628 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:54:12.628 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:54:12.628 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:54:12.628 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:54:12.628 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:54:12.628 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:54:12.628 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:54:12.638 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:54:12.638 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:54:12.638 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:54:12.638 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:54:12.648 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:54:12.648 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:54:12.648 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:54:12.648 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:54:12.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28000 150\n [Camera]
17-03-17 23:54:12.858 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:54:12.958 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 3.990831,
17-03-17 23:54:13.898 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:54:13.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:54:13.898 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:54:13.908 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:54:13.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:54:13.908 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:54:13.908 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:54:13.908 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:54:13.908 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:54:13.908 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:54:14.098 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28000 1425
17-03-17 23:54:14.248 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:54:14.288 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:54:14.288 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:54:14.288 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:14.288 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:54:14.298 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 23:54:14.298 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:54:14.298 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:54:14.298 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:14.298 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:54:14.298 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:54:14.748 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:54:14.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:54:14.748 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:54:14.748 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:54:14.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:54:14.748 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:54:14.758 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:54:14.758 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:54:14.758 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:54:14.758 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:54:14.938 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:54:14.938 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:54:14.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28000 150' command took 2 ms to send, 2262 ms to get response, and 2283 ms overall
17-03-17 23:54:14.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:54:14.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127377136942789. ------
17-03-17 23:54:14.938 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:54:14.938 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13371 mm
17-03-17 23:54:14.938 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:54:14.948 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29208, sync = True, waitForSettling = False)
17-03-17 23:54:14.948 -07 000000448 INF: Z Motor: Moving to -0.133706 mm, started at -0.127377 mm, distance = -6.33 um
17-03-17 23:54:14.948 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:54:14.948 -07 000000415 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 23:54:14.948 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:54:14.948 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 23:54:14.948 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:54:14.948 -07 000000382 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:54:14.958 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:54:14.958 -07 000000415 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:54:14.958 -07 000000415 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:54:14.958 -07 000000415 INF: Y Motor: Moving 1354 steps-33
17-03-17 23:54:14.958 -07 000000448 INF: FPGA: Xmit ZDACW 29208\n [Z Motor]
17-03-17 23:54:14.958 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:54:14.968 -07 000000448 INF: FPGA: 'ZDACW 29208' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:54:14.968 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:54:14.978 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:54:14.988 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:54:14.988 -07 000000551 INF: FPGA: Recv ZDACR 29208
17-03-17 23:54:14.998 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:54:14.998 -07 000000448 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 23:54:15.158 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:54:15.158 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:54:15.158 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:15.158 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:54:15.158 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:54:15.158 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:15.168 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:54:15.168 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-17 23:54:15.168 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:54:15.168 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:54:15.168 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-17 23:54:15.168 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 425 ms.
17-03-17 23:54:15.348 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 23:54:15.348 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:54:15.388 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:54:15.388 -07 000000547 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:54:15.398 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:54:15.398 -07 000000415 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:54:15.398 -07 000000415 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:54:15.398 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-17 23:54:16.348 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:54:16.348 -07 000000561 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:54:16.358 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:16.358 -07 000000415 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:54:16.378 -07 000000415 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:54:16.378 -07 000000415 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:54:16.378 -07 000000415 INF: Y Motor: Moved to 74.0083 after 1428 ms (table move)
17-03-17 23:54:16.378 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133706 mm (DAC = 29208)
17-03-17 23:54:16.378 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:16.388 -07 000000415 INF: FPGA: Recv ZSGSRD 30103
17-03-17 23:54:16.388 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:54:16.388 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:16.388 -07 000000415 INF: FPGA: Recv ZSGSRD 30106
17-03-17 23:54:16.398 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:16.398 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:16.398 -07 000000502 INF: FPGA: Recv ZSGSRD 30097
17-03-17 23:54:16.408 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:16.408 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:16.408 -07 000000448 INF: FPGA: Recv ZSGSRD 30103
17-03-17 23:54:16.418 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:16.418 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:16.418 -07 000000448 INF: FPGA: Recv ZSGSRD 30107
17-03-17 23:54:16.428 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:16.428 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:16.428 -07 000000502 INF: FPGA: Recv ZSGSRD 30103
17-03-17 23:54:16.438 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:16.438 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:16.438 -07 000000502 INF: FPGA: Recv ZSGSRD 30109
17-03-17 23:54:16.448 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:16.448 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:16.448 -07 000000502 INF: FPGA: Recv ZSGSRD 30102
17-03-17 23:54:16.458 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:16.458 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:16.458 -07 000000502 INF: FPGA: Recv ZSGSRD 30102
17-03-17 23:54:16.468 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:16.468 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:16.468 -07 000000415 INF: FPGA: Recv ZSGSRD 30099
17-03-17 23:54:16.478 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:16.478 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:54:16.478 -07 000000502 INF: FPGA: Recv ZPIEZORD 25830
17-03-17 23:54:16.488 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:16.488 -07 000000512 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.457 V. Piezo Error = -9.4 V.
17-03-17 23:54:16.488 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30103 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30103 (-132.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30097 (-132.9 uncal um), Max = 30109 (-133.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:54:16.488 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30103, posNoise = 6, negNoise = 6
17-03-17 23:54:16.488 -07 000000512 INF: Z Motor: After move to -0.133706, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:54:16.488 -07 000000512 INF: Z Motor: Settle wait time = 1432 ms, measure time = 108 ms (allowed 150 ms), total time = 1540 ms
17-03-17 23:54:16.488 -07 000000512 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:54:16.538 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 23:54:16.538 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:54:16.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:54:16.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:54:16.538 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:54:16.538 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:54:16.538 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:54:16.538 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:54:16.538 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:54:16.538 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:54:16.548 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:54:16.548 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:54:16.558 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:54:16.558 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:54:16.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:54:16.608 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:54:16.908 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:54:16.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:54:16.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:54:16.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:54:16.938 -07 000000448 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:54:16.948 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 23:54:16.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-17 23:54:17.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:54:17.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:17.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:54:17.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:54:17.048 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:54:17.048 -07 000000382 INF: Autofocus start
17-03-17 23:54:17.048 -07 000000382 INF: MeasureProfile start
17-03-17 23:54:17.048 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:54:17.058 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:54:17.058 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:54:17.058 -07 000000382 INF: MeasureProfile done
17-03-17 23:54:17.058 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:54:17.058 -07 000000382 INF: Autofocus finished
17-03-17 23:54:17.108 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:54:17.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:54:17.258 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:54:17.258 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:54:17.258 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.133711410114565. ----------
17-03-17 23:54:17.258 -07 000000610 INF: Cycle	79	Tile	18	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:54:17.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27715, sync = True, waitForSettling = True)
17-03-17 23:54:17.268 -07 000000610 INF: Z Motor: Moving to -0.126871 mm, started at -0.133711 mm, distance = 6.84 um
17-03-17 23:54:17.268 -07 000000610 INF: FPGA: Xmit ZDACW 27715\n [Z Motor]
17-03-17 23:54:17.268 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:54:17.278 -07 000000610 INF: FPGA: 'ZDACW 27715' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:54:17.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:54:17.278 -07 000000561 INF: FPGA: Recv ZDACR 27715
17-03-17 23:54:17.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:17.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:54:17.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:17.438 -07 000000482 INF: FPGA: Recv ZSGSRD 29036
17-03-17 23:54:17.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:54:17.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:17.448 -07 000000482 INF: FPGA: Recv ZSGSRD 29039
17-03-17 23:54:17.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:17.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:17.458 -07 000000482 INF: FPGA: Recv ZSGSRD 29042
17-03-17 23:54:17.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:17.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:17.468 -07 000000482 INF: FPGA: Recv ZSGSRD 29036
17-03-17 23:54:17.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:17.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:17.478 -07 000000482 INF: FPGA: Recv ZSGSRD 29038
17-03-17 23:54:17.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:17.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:17.488 -07 000000448 INF: FPGA: Recv ZSGSRD 29043
17-03-17 23:54:17.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:54:17.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:17.498 -07 000000382 INF: FPGA: Recv ZSGSRD 29037
17-03-17 23:54:17.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:17.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:17.508 -07 000000382 INF: FPGA: Recv ZSGSRD 29042
17-03-17 23:54:17.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:17.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:17.518 -07 000000382 INF: FPGA: Recv ZSGSRD 29035
17-03-17 23:54:17.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:17.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:17.528 -07 000000382 INF: FPGA: Recv ZSGSRD 29041
17-03-17 23:54:17.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:17.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:54:17.538 -07 000000382 INF: FPGA: Recv ZPIEZORD 24458
17-03-17 23:54:17.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:17.548 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.229 V. Piezo Error = -10.0 V.
17-03-17 23:54:17.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29039 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29038 (-126.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29035 (-126.1 uncal um), Max = 29043 (-126.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:54:17.548 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29039, posNoise = 4, negNoise = 4
17-03-17 23:54:17.548 -07 000000610 INF: Z Motor: After move to -0.126871, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:54:17.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:54:17.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:54:17.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:54:17.548 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:54:17.548 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:54:17.548 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:54:17.548 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:54:17.548 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:54:17.548 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:54:17.548 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:54:17.548 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:54:17.548 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:54:17.548 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:54:17.558 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:54:17.558 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:54:17.558 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:54:17.558 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:54:17.568 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:54:17.568 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:54:17.568 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:54:17.568 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:54:17.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 27892 150\n [Camera]
17-03-17 23:54:17.778 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:54:18.328 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.018051,
17-03-17 23:54:18.808 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:54:18.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:54:18.808 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:54:18.808 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:54:18.808 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:54:18.818 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:54:18.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:54:18.818 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:54:18.818 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:54:18.818 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:54:19.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27892 1422
17-03-17 23:54:19.148 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:54:19.208 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:54:19.208 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:54:19.208 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:19.218 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:54:19.218 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:54:19.218 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:19.218 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:54:19.218 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:54:19.218 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:54:19.228 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:54:19.658 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:54:19.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:54:19.658 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:54:19.658 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:54:19.658 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:54:19.658 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:54:19.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:54:19.658 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:54:19.658 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:54:19.658 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:54:19.848 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-17 23:54:19.848 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:54:19.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 27892 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:54:19.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:54:19.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.126876048395731. ------
17-03-17 23:54:19.848 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:54:19.848 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13301 mm
17-03-17 23:54:19.848 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:54:19.848 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29056, sync = True, waitForSettling = False)
17-03-17 23:54:19.848 -07 000000551 INF: Z Motor: Moving to -0.133010 mm, started at -0.126876 mm, distance = -6.13 um
17-03-17 23:54:19.848 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 23:54:19.848 -07 000000618 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 23:54:19.858 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:54:19.858 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:54:19.858 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:54:19.858 -07 000000512 INF: FPGA: Recv YRDPOS 151570
17-03-17 23:54:19.868 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:54:19.868 -07 000000618 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:54:19.868 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:54:19.988 -07 000000551 INF: FPGA: Xmit ZDACW 29056\n [Z Motor]
17-03-17 23:54:19.988 -07 000000618 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:54:19.988 -07 000000618 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:54:19.988 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:54:19.998 -07 000000551 INF: FPGA: 'ZDACW 29056' command took 0 ms to send, 0 ms to get response, and 140 ms overall
17-03-17 23:54:19.998 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:54:19.998 -07 000000478 INF: FPGA: Recv ZDACR 29056
17-03-17 23:54:20.008 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:54:20.008 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:20.008 -07 000000551 INF: Z Motor: MoveAbsStepped took 151 ms (did NOT wait for settling yet))
17-03-17 23:54:20.058 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:54:20.058 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:54:20.058 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:20.058 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:54:20.058 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:54:20.058 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:20.058 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:54:20.058 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:54:20.058 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 23:54:20.068 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:54:20.068 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 78 ms to get response, and 212 ms overall
17-03-17 23:54:20.068 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:54:20.388 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 23:54:20.388 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 392 ms overall
17-03-17 23:54:20.408 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:54:20.418 -07 000000409 INF: FPGA: Recv YRDPOS 153255
17-03-17 23:54:20.418 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:54:20.418 -07 000000618 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:54:20.418 -07 000000618 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 23:54:20.418 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 23:54:21.368 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:54:21.368 -07 000000459 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:54:21.378 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:54:21.378 -07 000000618 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:54:21.388 -07 000000618 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:54:21.388 -07 000000618 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:54:21.388 -07 000000618 INF: Y Motor: Moved to 74.8320 after 1538 ms (table move)
17-03-17 23:54:21.398 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133010 mm (DAC = 29056)
17-03-17 23:54:21.398 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:21.398 -07 000000551 INF: FPGA: Recv ZSGSRD 29984
17-03-17 23:54:21.408 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:54:21.408 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:21.408 -07 000000618 INF: FPGA: Recv ZSGSRD 29996
17-03-17 23:54:21.418 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:21.418 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:21.418 -07 000000512 INF: FPGA: Recv ZSGSRD 29994
17-03-17 23:54:21.428 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:21.428 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:21.428 -07 000000512 INF: FPGA: Recv ZSGSRD 29991
17-03-17 23:54:21.438 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:21.438 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:21.438 -07 000000512 INF: FPGA: Recv ZSGSRD 29989
17-03-17 23:54:21.448 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:21.448 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:21.448 -07 000000512 INF: FPGA: Recv ZSGSRD 29994
17-03-17 23:54:21.458 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:21.458 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:21.458 -07 000000512 INF: FPGA: Recv ZSGSRD 30001
17-03-17 23:54:21.468 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:21.468 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:21.468 -07 000000623 INF: FPGA: Recv ZSGSRD 30001
17-03-17 23:54:21.478 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:21.478 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:21.478 -07 000000551 INF: FPGA: Recv ZSGSRD 29996
17-03-17 23:54:21.488 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:21.488 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:21.488 -07 000000429 INF: FPGA: Recv ZSGSRD 29995
17-03-17 23:54:21.498 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:21.498 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:54:21.498 -07 000000475 INF: FPGA: Recv ZPIEZORD 25733
17-03-17 23:54:21.508 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:21.508 -07 000000501 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.434 V. Piezo Error = -9.4 V.
17-03-17 23:54:21.508 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29994 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29994 (-132.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29984 (-132.2 uncal um), Max = 30001 (-132.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:54:21.508 -07 000000501 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29994, posNoise = 7, negNoise = 10
17-03-17 23:54:21.508 -07 000000501 INF: Z Motor: After move to -0.133010, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:54:21.508 -07 000000501 INF: Z Motor: Settle wait time = 1543 ms, measure time = 108 ms (allowed 150 ms), total time = 1651 ms
17-03-17 23:54:21.508 -07 000000501 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:54:21.558 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1702 ms
17-03-17 23:54:21.558 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:54:21.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:54:21.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:54:21.558 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:54:21.558 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:54:21.558 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:54:21.558 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:54:21.558 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:54:21.568 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:54:21.568 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:54:21.568 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:54:21.578 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:54:21.578 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:54:21.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:54:21.618 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:54:21.918 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:54:21.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:54:21.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:54:21.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:54:21.958 -07 000000409 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:54:21.958 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 23:54:21.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-17 23:54:22.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:54:22.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:22.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:54:22.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:54:22.108 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:54:22.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 78. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:54:22.158 -07 000000501 INF: Autofocus start
17-03-17 23:54:22.158 -07 000000501 INF: MeasureProfile start
17-03-17 23:54:22.158 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:54:22.158 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:54:22.168 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:54:22.168 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:54:22.168 -07 000000501 INF: MeasureProfile done
17-03-17 23:54:22.168 -07 000000501 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 23:54:22.168 -07 000000501 INF: Autofocus finished
17-03-17 23:54:22.368 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:54:22.368 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:54:22.368 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133011170991113. ----------
17-03-17 23:54:22.368 -07 000000610 INF: Cycle	79	Tile	19	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:54:22.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27534, sync = True, waitForSettling = True)
17-03-17 23:54:22.378 -07 000000610 INF: Z Motor: Moving to -0.126043 mm, started at -0.133011 mm, distance = 6.97 um
17-03-17 23:54:22.378 -07 000000610 INF: FPGA: Xmit ZDACW 27534\n [Z Motor]
17-03-17 23:54:22.378 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:54:22.388 -07 000000610 INF: FPGA: 'ZDACW 27534' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:54:22.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:54:22.388 -07 000000547 INF: FPGA: Recv ZDACR 27534
17-03-17 23:54:22.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:22.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:54:22.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:22.548 -07 000000551 INF: FPGA: Recv ZSGSRD 28914
17-03-17 23:54:22.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:22.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:22.558 -07 000000475 INF: FPGA: Recv ZSGSRD 28910
17-03-17 23:54:22.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:22.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:22.568 -07 000000409 INF: FPGA: Recv ZSGSRD 28911
17-03-17 23:54:22.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:22.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:22.578 -07 000000409 INF: FPGA: Recv ZSGSRD 28911
17-03-17 23:54:22.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:22.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:23.218 -07 000000512 INF: FPGA: Recv ZSGSRD 28914
17-03-17 23:54:23.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 620 ms to get response, and 630 ms overall
17-03-17 23:54:23.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:23.218 -07 000000501 INF: FPGA: Recv ZSGSRD 28919
17-03-17 23:54:23.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:23.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:23.228 -07 000000618 INF: FPGA: Recv ZSGSRD 28913
17-03-17 23:54:23.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:23.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:23.238 -07 000000501 INF: FPGA: Recv ZSGSRD 28912
17-03-17 23:54:23.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:23.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:23.248 -07 000000512 INF: FPGA: Recv ZSGSRD 28909
17-03-17 23:54:23.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:23.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:54:23.258 -07 000000547 INF: FPGA: Recv ZSGSRD 28911
17-03-17 23:54:23.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:23.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:54:23.268 -07 000000551 INF: FPGA: Recv ZPIEZORD 24304
17-03-17 23:54:23.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:23.278 -07 000000610 INF: Z Motor: Piezo is near 31.9 V (nominally 0 to 100 V), expect near 42.0 V, since DAC is at 4.201 V. Piezo Error = -10.1 V.
17-03-17 23:54:23.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.0 um, Read 10 ADC samples: Avg = 28912 (-125.3 uncal um), Error = 0.8 uncal um, Median = 28912 (-125.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28909 (-125.3 uncal um), Max = 28919 (-125.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:54:23.278 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28912, posNoise = 7, negNoise = 3
17-03-17 23:54:23.278 -07 000000610 INF: Z Motor: After move to -0.126043, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:54:23.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 899 ms)
17-03-17 23:54:23.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:54:23.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:54:23.278 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:54:23.278 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:54:23.278 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:54:23.278 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:54:23.278 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:54:23.278 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:54:23.278 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:54:23.278 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:54:23.278 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:54:23.278 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:54:23.288 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:54:23.288 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:54:23.288 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:54:23.288 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:54:23.298 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:54:23.298 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:54:23.298 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:54:23.298 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:54:23.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 27711 150\n [Camera]
17-03-17 23:54:23.508 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:54:23.838 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.027603,
17-03-17 23:54:24.538 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:54:24.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:54:24.538 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:54:24.548 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:54:24.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:54:24.548 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:54:24.548 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:54:24.548 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:54:24.548 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:54:24.548 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:54:24.738 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27711 1422
17-03-17 23:54:24.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:54:24.948 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:54:24.948 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:54:24.948 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:24.948 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:54:24.948 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:54:24.948 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:54:24.948 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:54:24.948 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:24.948 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:54:24.958 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:54:25.388 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:54:25.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:54:25.388 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:54:25.388 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:54:25.388 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:54:25.388 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:54:25.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:54:25.388 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:54:25.388 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:54:25.388 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:54:25.578 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:54:25.578 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:54:25.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 27711 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:54:25.778 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 23:54:25.778 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:54:25.778 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:25.778 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:54:25.778 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:54:25.778 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:54:25.778 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:54:25.778 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:54:25.778 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:54:25.778 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 23:54:25.898 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 119 ms.
17-03-17 23:54:25.908 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-17 23:54:25.908 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 23:54:25.948 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 23:54:25.958 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 23:54:25.958 -07 000000610 INF: Imaging Cycle 79: ScanTilesCommand Cycle 79 time end. Duration was 203487 ms.
17-03-17 23:54:25.958 -07 000000610 INF: =================== Cycle #79 ===================
17-03-17 23:54:25.958 -07 000000610 INF: ===================  ===================
17-03-17 23:54:25.958 -07 000000448 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 23:54:25.968 -07 000000409 INF: FPGA: Recv EXLED1ADCR 23
17-03-17 23:54:25.968 -07 000000448 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:54:25.968 -07 000000448 INF: GreenLED: Using Green data: Photodiode ADC 23 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.6 mW
17-03-17 23:54:25.968 -07 000000448 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 79, FrontChillerTemperature: 4.027603, FrontChillerHeatSinkTemperature: 0.485279, AmbientTemperature: 18.52705, FlowCellCompartmentTemperature: 21.9911, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.08824, GreenLEDSensorTemperature: 30.07047, PhotodiodePowerAdcGreen: 23, PhotodiodePowerMwGreen: 1.653493
17-03-17 23:54:26.038 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.