17-03-17 17:54:19.408 -07 000000610 INF: =================== Cycle #7 ===================
17-03-17 17:54:19.408 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 17:54:19.408 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8335 mm, delta = 0.5471 mm
17-03-17 17:54:19.408 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:54:19.408 -07 000000551 INF: FPGA: Recv YRDPOS 153259
17-03-17 17:54:19.418 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:54:19.418 -07 000000610 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:54:19.418 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 17:54:19.418 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 17:54:19.418 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 17:54:19.528 -07 000000576 INF: FPGA: Recv YMVTO 154378 876
17-03-17 17:54:19.528 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 118 ms overall
17-03-17 17:54:19.528 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 17:54:19.528 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.547 mm) should take 875 steps, but required 876 steps (0.548 mm). Slippage = 0.001 mm (0.00%).
17-03-17 17:54:19.528 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.547 mm, average velocity = 4.636 mm/sec
17-03-17 17:54:21.538 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:54:21.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:54:21.928 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.966297,
17-03-17 17:54:22.528 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:54:22.528 -07 000000627 INF: FPGA: Recv YRDPOS 154387
17-03-17 17:54:22.538 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:54:22.538 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:54:22.548 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:54:22.548 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 9 counts (0.004 mm)
17-03-17 17:54:22.548 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3141 ms
17-03-17 17:54:22.548 -07 000000610 INF: =================== Cycle #7, Flow Cell Temp 60° ===================
17-03-17 17:54:22.548 -07 000000610 INF: =================== Cycle #7, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 17:54:22.558 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 17:54:22.558 -07 000000431 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:54:22.568 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:22.568 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:54:22.568 -07 000000551 INF: FPGA: Recv TEC2EN 
17-03-17 17:54:22.578 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:22.578 -07 000000610 INF: =================== Cycle #7, Flow Cell Temp 60° ===================
17-03-17 17:54:22.578 -07 000000610 INF: =================== Cycle #7 ===================
17-03-17 17:54:22.578 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:54:22.578 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:54:22.608 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 17:54:22.608 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 17:54:22.608 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:54:22.908 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:54:22.928 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 17:54:22.928 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 17:54:22.978 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:54:22.998 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:54:22.998 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:54:23.098 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3) ===================
17-03-17 17:54:23.098 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 17:54:23.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:54:23.128 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:54:23.128 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:54:23.128 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:54:23.258 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 17:54:23.298 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:54:26.428 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:26.458 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:54:26.538 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 6
17-03-17 17:54:26.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=6, R2=5, Total=11. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=60, R2=67, Total=127. Warn if over 250 bubbles per interval.
17-03-17 17:54:26.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:26.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:54:27.288 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.966297,
17-03-17 17:54:27.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:27.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:54:27.358 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 17:54:27.358 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3) ===================
17-03-17 17:54:27.488 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:54:27.518 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:54:27.518 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:54:27.648 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:54:27.678 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:54:27.678 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:54:27.678 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:54:27.808 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:54:27.838 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:54:28.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:28.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:54:28.298 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:54:28.298 -07 000000610 INF: =================== Cycle #7 ===================
17-03-17 17:54:29.518 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:54:29.518 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 17:54:29.518 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:54:29.538 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:54:29.538 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 17:54:29.538 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 17:54:29.668 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:54:29.688 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 17:54:29.688 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 17:54:29.738 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:54:29.758 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 17:54:29.758 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:54:29.858 -07 000000610 INF: =================== Cycle #7, Pumping Reagent CMS (4) ===================
17-03-17 17:54:29.858 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:54:29.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:54:29.888 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:54:29.888 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:54:29.888 -07 000000610 INF: =================== Cycle #7, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 17:54:30.018 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:54:30.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:54:31.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:31.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:54:31.538 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 17:54:31.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=61, R2=69, Total=130. Warn if over 250 bubbles per interval.
17-03-17 17:54:31.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:31.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:54:31.978 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:54:31.978 -07 000000610 INF: =================== Cycle #7, Pumping Reagent CMS (4) ===================
17-03-17 17:54:32.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:54:32.138 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:54:32.138 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:54:32.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:54:32.298 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:54:32.298 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:54:32.298 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:54:32.428 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:54:32.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:54:32.658 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.963579,
17-03-17 17:54:32.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:32.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:54:32.918 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:54:32.918 -07 000000610 INF: =================== Cycle #7 ===================
17-03-17 17:54:34.138 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:54:34.138 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:54:34.138 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:54:34.158 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 17:54:34.158 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 17:54:34.158 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 17:54:34.308 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:54:34.328 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 17:54:34.328 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 17:54:34.378 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:54:34.398 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:54:34.398 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:54:34.498 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3) ===================
17-03-17 17:54:34.498 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:54:34.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:54:34.528 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:54:34.528 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:54:34.528 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:54:34.658 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:54:34.698 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:54:35.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:35.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:54:35.598 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 17:54:35.598 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3) ===================
17-03-17 17:54:35.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:54:35.758 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:54:35.758 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:54:35.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:54:35.918 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:54:35.918 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:54:35.918 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:54:36.048 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:54:36.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:54:36.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:36.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:54:36.538 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:54:36.538 -07 000000610 INF: =================== Cycle #7 ===================
17-03-17 17:54:36.538 -07 000000475 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:54:36.538 -07 000000576 INF: WaitCommand(10000) start
17-03-17 17:54:36.538 -07 000000475 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:54:36.538 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:54:36.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=61, R2=69, Total=130. Warn if over 250 bubbles per interval.
17-03-17 17:54:37.758 -07 000000475 INF: AsyncDelayTimer waited 1216ms
17-03-17 17:54:37.758 -07 000000475 INF: LanePump: Xmit /1?\r
17-03-17 17:54:37.788 -07 000000475 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:54:37.788 -07 000000475 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:54:37.918 -07 000000475 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:54:37.958 -07 000000475 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:54:38.028 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.958108,
17-03-17 17:54:39.488 -07 000000475 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:39.518 -07 000000475 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:54:39.938 -07 000000475 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:39.968 -07 000000475 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:54:39.968 -07 000000475 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 17:54:39.968 -07 000000475 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:54:39.968 -07 000000475 INF: ===================  ===================
17-03-17 17:54:41.538 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:54:41.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=61, R2=69, Total=130. Warn if over 250 bubbles per interval.
17-03-17 17:54:43.398 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.971733,
17-03-17 17:54:46.538 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:54:46.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=61, R2=69, Total=130. Warn if over 250 bubbles per interval.
17-03-17 17:54:46.548 -07 000000576 INF: WaitCommand(10000) end
17-03-17 17:54:46.548 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3) ===================
17-03-17 17:54:46.548 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 17:54:46.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:54:46.578 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:54:46.578 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:54:46.578 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:54:46.708 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 17:54:46.748 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:54:48.768 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.958108,
17-03-17 17:54:51.538 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:54:51.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=61, R2=69, Total=130. Warn if over 250 bubbles per interval.
17-03-17 17:54:52.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:52.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:54:53.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:53.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:54:53.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:53.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:54:54.138 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.964938,
17-03-17 17:54:54.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:54.258 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:54:54.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:54.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:54:54.708 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 17:54:54.708 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3) ===================
17-03-17 17:54:54.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:54:54.868 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:54:54.868 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:54:54.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:54:55.028 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:54:55.028 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:54:55.028 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:54:55.158 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:54:55.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:54:55.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:55.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:54:55.648 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:54:55.648 -07 000000610 INF: =================== Cycle #7 ===================
17-03-17 17:54:56.538 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 17:54:56.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=62, R2=70, Total=132. Warn if over 250 bubbles per interval.
17-03-17 17:54:56.868 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:54:56.868 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 17:54:56.868 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:54:56.888 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:54:56.888 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 17:54:56.888 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 17:54:57.098 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:54:57.118 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 17:54:57.118 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 17:54:57.168 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:54:57.188 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:54:57.188 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:54:57.288 -07 000000610 INF: =================== Cycle #7, Pumping Reagent IMT (1) ===================
17-03-17 17:54:57.288 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:54:57.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:54:57.318 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:54:57.318 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:54:57.318 -07 000000610 INF: =================== Cycle #7, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 17:54:57.448 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:54:57.488 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:54:58.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:58.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:54:59.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:54:59.408 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:54:59.408 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:54:59.408 -07 000000610 INF: =================== Cycle #7, Pumping Reagent IMT (1) ===================
17-03-17 17:54:59.508 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.971733,
17-03-17 17:54:59.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:54:59.568 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:54:59.568 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:54:59.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:54:59.728 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:54:59.728 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:54:59.728 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:54:59.858 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:54:59.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:55:00.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:55:00.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:55:00.348 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:55:00.348 -07 000000610 INF: =================== Cycle #7 ===================
17-03-17 17:55:01.538 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:55:01.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=62, R2=70, Total=132. Warn if over 250 bubbles per interval.
17-03-17 17:55:01.568 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 17:55:01.568 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:55:01.568 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:55:01.588 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:55:01.588 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 17:55:01.588 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:55:01.818 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:55:01.838 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 17:55:01.838 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 17:55:01.888 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:55:01.908 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:55:01.908 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:55:02.008 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3) ===================
17-03-17 17:55:02.008 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:55:02.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:55:02.038 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:55:02.038 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:55:02.038 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:55:02.168 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:55:02.208 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:55:03.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:55:03.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:55:03.108 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 17:55:03.108 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3) ===================
17-03-17 17:55:03.238 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:55:03.268 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:55:03.268 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:55:03.398 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:55:03.428 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:55:03.428 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:55:03.428 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:55:03.558 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:55:03.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:55:04.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:55:04.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:55:04.048 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:55:04.048 -07 000000610 INF: =================== Cycle #7 ===================
17-03-17 17:55:04.048 -07 000000610 INF: =================== Cycle #7, Flow Cell Temp 65° ===================
17-03-17 17:55:04.048 -07 000000610 INF: =================== Cycle #7, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 17:55:04.048 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 17:55:04.048 -07 000000433 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:55:04.058 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:55:04.058 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:55:04.058 -07 000000480 INF: FPGA: Recv TEC2EN 
17-03-17 17:55:04.068 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:55:04.068 -07 000000610 INF: =================== Cycle #7, Flow Cell Temp 65° ===================
17-03-17 17:55:04.068 -07 000000610 INF: =================== Cycle #7 ===================
17-03-17 17:55:04.068 -07 000000610 INF: WaitCommand(30000) start
17-03-17 17:55:04.878 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.979922,
17-03-17 17:55:06.538 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:55:06.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=62, R2=70, Total=132. Warn if over 250 bubbles per interval.
17-03-17 17:55:10.258 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.997626,
17-03-17 17:55:11.538 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:55:11.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=62, R2=70, Total=132. Warn if over 250 bubbles per interval.
17-03-17 17:55:15.618 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.975845,
17-03-17 17:55:16.538 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:55:16.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=62, R2=70, Total=132. Warn if over 250 bubbles per interval.
17-03-17 17:55:20.988 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.951279,
17-03-17 17:55:21.538 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:55:21.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=62, R2=70, Total=132. Warn if over 250 bubbles per interval.
17-03-17 17:55:26.358 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.98264,
17-03-17 17:55:26.538 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:55:26.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=62, R2=70, Total=132. Warn if over 250 bubbles per interval.
17-03-17 17:55:31.538 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:55:31.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=62, R2=70, Total=132. Warn if over 250 bubbles per interval.
17-03-17 17:55:31.728 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.986717,
17-03-17 17:55:34.078 -07 000000610 INF: WaitCommand(30000) end
17-03-17 17:55:34.078 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3) ===================
17-03-17 17:55:34.078 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 17:55:34.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:55:34.208 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:55:34.208 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:55:34.208 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:55:34.338 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 17:55:34.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:55:34.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:55:34.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:55:34.948 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 17:55:34.948 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3) ===================
17-03-17 17:55:35.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:55:35.108 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 17:55:35.108 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 17:55:35.238 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:55:35.268 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 17:55:35.268 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 17:55:35.268 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:55:35.398 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:55:35.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:55:35.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:55:35.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:55:35.888 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:55:35.888 -07 000000610 INF: =================== Cycle #7 ===================
17-03-17 17:55:35.888 -07 000000593 INF: WaitCommand(30000) start
17-03-17 17:55:35.888 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:55:35.888 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:55:36.548 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:55:36.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=62, R2=70, Total=132. Warn if over 250 bubbles per interval.
17-03-17 17:55:37.098 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.985358,
17-03-17 17:55:37.108 -07 000000626 INF: AsyncDelayTimer waited 1216ms
17-03-17 17:55:37.108 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-17 17:55:37.138 -07 000000626 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 17:55:37.138 -07 000000626 INF: LanePump: Current Position of Pump is: 1920
17-03-17 17:55:37.268 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:55:37.308 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:55:39.648 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 17:55:39.678 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:55:40.098 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 17:55:40.128 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:55:40.128 -07 000000626 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 17:55:40.128 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:55:40.128 -07 000000626 INF: ===================  ===================
17-03-17 17:55:41.548 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:55:41.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=62, R2=70, Total=132. Warn if over 250 bubbles per interval.
17-03-17 17:55:42.468 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.994908,
17-03-17 17:55:46.548 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:55:46.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=62, R2=70, Total=132. Warn if over 250 bubbles per interval.
17-03-17 17:55:47.838 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 4.014009,
17-03-17 17:55:51.548 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:55:51.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=62, R2=70, Total=132. Warn if over 250 bubbles per interval.
17-03-17 17:55:53.218 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.954032,
17-03-17 17:55:56.548 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:55:56.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=62, R2=70, Total=132. Warn if over 250 bubbles per interval.
17-03-17 17:55:58.578 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.954032,
17-03-17 17:56:01.548 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:56:01.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=62, R2=70, Total=132. Warn if over 250 bubbles per interval.
17-03-17 17:56:03.948 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.947167,
17-03-17 17:56:05.898 -07 000000593 INF: WaitCommand(30000) end
17-03-17 17:56:05.898 -07 000000610 INF: =================== Cycle #7, Flow Cell Temp 22° ===================
17-03-17 17:56:05.898 -07 000000610 INF: =================== Cycle #7, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 17:56:05.898 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 17:56:05.908 -07 000000486 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:56:05.908 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:56:05.908 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:56:05.908 -07 000000593 INF: FPGA: Recv TEC2EN 
17-03-17 17:56:05.918 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:56:05.918 -07 000000610 INF: =================== Cycle #7, Flow Cell Temp 22° ===================
17-03-17 17:56:05.918 -07 000000610 INF: =================== Cycle #7 ===================
17-03-17 17:56:05.918 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3) ===================
17-03-17 17:56:05.918 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 17:56:05.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:56:05.958 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:56:05.958 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:56:05.958 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:56:06.088 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 17:56:06.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:56:06.548 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:56:06.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=62, R2=70, Total=132. Warn if over 250 bubbles per interval.
17-03-17 17:56:09.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:56:09.288 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:56:09.308 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.979922,
17-03-17 17:56:09.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:56:09.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:56:10.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:56:10.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:56:10.188 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 17:56:10.188 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3) ===================
17-03-17 17:56:10.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:56:10.348 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:56:10.348 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:56:10.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:56:10.508 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:56:10.508 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:56:10.508 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:56:10.638 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:56:10.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:56:11.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:56:11.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:56:11.128 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:56:11.128 -07 000000610 INF: =================== Cycle #7 ===================
17-03-17 17:56:11.548 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-17 17:56:11.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=65, R2=72, Total=137. Warn if over 250 bubbles per interval.
17-03-17 17:56:12.348 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:56:12.348 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 17:56:12.348 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:56:12.368 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:56:12.368 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 17:56:12.368 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 17:56:12.518 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:56:12.538 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 17:56:12.538 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 17:56:12.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:56:12.608 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 17:56:12.608 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:56:12.708 -07 000000610 INF: =================== Cycle #7, Pumping Reagent USM (2) ===================
17-03-17 17:56:12.708 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:56:12.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:56:12.738 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:56:12.738 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:56:12.738 -07 000000610 INF: =================== Cycle #7, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 17:56:12.868 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:56:12.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:56:14.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:56:14.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:56:14.668 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.964938,
17-03-17 17:56:14.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:56:14.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:56:14.828 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:56:14.828 -07 000000610 INF: =================== Cycle #7, Pumping Reagent USM (2) ===================
17-03-17 17:56:14.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:56:15.758 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:56:15.758 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:56:15.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:56:15.918 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:56:15.918 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:56:15.918 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:56:16.048 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:56:16.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:56:16.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:56:16.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:56:16.538 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:56:16.538 -07 000000610 INF: =================== Cycle #7 ===================
17-03-17 17:56:16.548 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 17:56:16.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:56:17.758 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 17:56:17.758 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:56:17.758 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:56:17.778 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 17:56:17.778 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 17:56:17.778 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:56:17.928 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:56:17.948 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 17:56:17.948 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 17:56:17.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:56:18.018 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:56:18.018 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:56:18.118 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3) ===================
17-03-17 17:56:18.118 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:56:18.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:56:18.148 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:56:18.148 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:56:18.148 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:56:18.278 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:56:18.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:56:19.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:56:19.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:56:19.218 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 17:56:19.218 -07 000000610 INF: =================== Cycle #7, Pumping Reagent PR2 (3) ===================
17-03-17 17:56:19.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:56:19.378 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:56:19.378 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:56:19.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:56:19.538 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:56:19.538 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:56:19.538 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:56:19.668 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:56:19.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:56:20.028 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.959467,
17-03-17 17:56:20.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:56:20.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:56:20.158 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:56:20.158 -07 000000610 INF: =================== Cycle #7 ===================
17-03-17 17:56:20.158 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:56:20.158 -07 000000627 INF: WaitCommand(10000) start
17-03-17 17:56:20.158 -07 000000486 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:56:21.378 -07 000000486 INF: AsyncDelayTimer waited 1213ms
17-03-17 17:56:21.378 -07 000000486 INF: LanePump: Xmit /1?\r
17-03-17 17:56:21.408 -07 000000486 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:56:21.408 -07 000000486 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:56:21.538 -07 000000486 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:56:21.548 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:56:21.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:56:21.578 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:56:23.108 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 17:56:23.138 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:56:23.558 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 17:56:23.588 -07 000000486 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:56:23.588 -07 000000486 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 17:56:23.588 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:56:23.588 -07 000000486 INF: ===================  ===================
17-03-17 17:56:25.388 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.973092,
17-03-17 17:56:26.548 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:56:26.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:56:30.168 -07 000000627 INF: WaitCommand(10000) end
17-03-17 17:56:30.168 -07 000000610 INF: =================== Cycle #7, Imaging ===================
17-03-17 17:56:30.168 -07 000000610 INF: Imaging Cycle 7: ScanTilesCommand Cycle 7 time start.
17-03-17 17:56:30.178 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 17:56:30.178 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:56:30.198 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:56:30.198 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 17:56:30.198 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 17:56:31.138 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:56:31.158 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 17:56:31.158 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 17:56:31.208 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:56:31.228 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 17:56:31.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:56:31.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:56:31.228 -07 000000433 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 17:56:31.228 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:56:31.228 -07 000000433 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 17:56:31.228 -07 000000480 INF: FPGA: Recv EXLED1ON 
17-03-17 17:56:31.238 -07 000000433 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:56:31.238 -07 000000433 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 17:56:31.238 -07 000000593 INF: FPGA: Recv EXLED1ADCR 23158
17-03-17 17:56:31.248 -07 000000433 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:31.248 -07 000000433 INF: RedLED: Using Red data: Photodiode ADC 23158 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.8 mW
17-03-17 17:56:31.248 -07 000000433 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 17:56:31.248 -07 000000480 INF: FPGA: Recv EXLED1OFF 
17-03-17 17:56:31.258 -07 000000433 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:56:31.258 -07 000000433 INF: RedLED: LED was on for 19 ms
17-03-17 17:56:31.258 -07 000000433 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 17:56:31.258 -07 000000433 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 17:56:31.258 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:56:31.258 -07 000000433 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 17:56:31.258 -07 000000626 INF: FPGA: Recv EXLED2ON 
17-03-17 17:56:31.268 -07 000000433 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:56:31.268 -07 000000433 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 17:56:31.268 -07 000000409 INF: FPGA: Recv EXLED1ADCR 2099
17-03-17 17:56:31.278 -07 000000433 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:31.278 -07 000000433 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-17 17:56:31.278 -07 000000433 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 17:56:31.278 -07 000000593 INF: FPGA: Recv EXLED2OFF 
17-03-17 17:56:31.288 -07 000000433 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:31.288 -07 000000433 INF: GreenLED: LED was on for 20 ms
17-03-17 17:56:31.288 -07 000000433 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 17:56:31.288 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 17:56:31.288 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-17 17:56:31.298 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:56:31.298 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 17:56:31.428 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.989471,
17-03-17 17:56:31.548 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:56:31.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:56:31.798 -07 000000409 INF: FPGA: Recv EMOUT
17-03-17 17:56:31.798 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 17:56:31.798 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 17:56:31.798 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-17 17:56:31.808 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:56:31.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:56:31.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126972411577858. ------
17-03-17 17:56:31.808 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:56:31.808 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17884 mm
17-03-17 17:56:31.808 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:56:31.818 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 17:56:31.818 -07 000000409 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-17 17:56:31.818 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:56:31.818 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:56:31.818 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 39067, sync = True, waitForSettling = False)
17-03-17 17:56:31.818 -07 000000626 INF: Z Motor: Moving to -0.178837 mm, started at -0.126972 mm, distance = -51.86 um
17-03-17 17:56:31.828 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:56:31.838 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:31.838 -07 000000433 INF: FPGA: Recv YRDPOS 154387
17-03-17 17:56:31.848 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:56:31.848 -07 000000626 INF: FPGA: Xmit ZDACW 39067\n [Z Motor]
17-03-17 17:56:31.848 -07 000000409 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:31.848 -07 000000409 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 17:56:31.848 -07 000000409 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 17:56:31.848 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:56:31.858 -07 000000626 INF: FPGA: 'ZDACW 39067' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-17 17:56:31.858 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:56:31.858 -07 000000433 INF: FPGA: Recv ZDACR 39067
17-03-17 17:56:31.868 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:56:31.868 -07 000000626 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 17:56:31.868 -07 000000409 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 17:56:32.028 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:56:32.028 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 215 ms overall
17-03-17 17:56:33.548 -07 000000433 INF: FPGA: Recv YMVTO 122703 24781
17-03-17 17:56:33.548 -07 000000409 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1706 ms overall
17-03-17 17:56:33.548 -07 000000409 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 17:56:33.548 -07 000000409 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24781 steps (15.488 mm). Slippage = 0.016 mm (0.00%).
17-03-17 17:56:33.548 -07 000000409 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.472 mm, average velocity = 9.069 mm/sec
17-03-17 17:56:36.398 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:36.398 -07 000000433 INF: FPGA: Recv YRDPOS 122699
17-03-17 17:56:36.408 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:56:36.408 -07 000000409 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:36.418 -07 000000409 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:56:36.428 -07 000000409 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 17:56:36.428 -07 000000409 INF: Y Motor: Moved to 59.9116 after 4609 ms
17-03-17 17:56:36.428 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178837 mm (DAC = 39067)
17-03-17 17:56:36.428 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:36.428 -07 000000409 INF: FPGA: Recv ZSGSRD 37128
17-03-17 17:56:36.438 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:56:36.438 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:36.438 -07 000000409 INF: FPGA: Recv ZSGSRD 37123
17-03-17 17:56:36.448 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:36.448 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:36.448 -07 000000433 INF: FPGA: Recv ZSGSRD 37133
17-03-17 17:56:36.458 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:36.458 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:36.458 -07 000000409 INF: FPGA: Recv ZSGSRD 37123
17-03-17 17:56:36.468 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:36.478 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:36.478 -07 000000433 INF: FPGA: Recv ZSGSRD 37130
17-03-17 17:56:36.488 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:56:36.488 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:36.488 -07 000000409 INF: FPGA: Recv ZSGSRD 37128
17-03-17 17:56:36.498 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:36.498 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:36.498 -07 000000486 INF: FPGA: Recv ZSGSRD 37128
17-03-17 17:56:36.508 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:36.508 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:36.508 -07 000000486 INF: FPGA: Recv ZSGSRD 37124
17-03-17 17:56:36.518 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:36.518 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:36.518 -07 000000409 INF: FPGA: Recv ZSGSRD 37129
17-03-17 17:56:36.528 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:36.528 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:36.528 -07 000000486 INF: FPGA: Recv ZSGSRD 37133
17-03-17 17:56:36.538 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:36.538 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:56:36.538 -07 000000486 INF: FPGA: Recv ZPIEZORD 33446
17-03-17 17:56:36.548 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:36.548 -07 000000593 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.961 V. Piezo Error = -8.2 V.
17-03-17 17:56:36.548 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37128 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37128 (-177.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37123 (-177.9 uncal um), Max = 37133 (-178.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:56:36.548 -07 000000593 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37128, posNoise = 5, negNoise = 5
17-03-17 17:56:36.548 -07 000000593 INF: Z Motor: After move to -0.178837, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:56:36.548 -07 000000593 INF: Z Motor: Settle wait time = 4613 ms, measure time = 115 ms (allowed 150 ms), total time = 4728 ms
17-03-17 17:56:36.548 -07 000000593 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 17:56:36.548 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:56:36.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:56:36.588 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4772 ms
17-03-17 17:56:36.588 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:56:36.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:56:36.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:56:36.588 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:56:36.588 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:56:36.588 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:56:36.588 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:56:36.598 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:56:36.598 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 17:56:36.618 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 17:56:36.618 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:56:36.618 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 17:56:36.618 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:56:36.638 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:56:36.638 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 17:56:36.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:56:36.678 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:56:36.788 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.994908,
17-03-17 17:56:36.878 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:56:36.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:56:36.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:56:36.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:56:36.918 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:56:36.918 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:56:36.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 17:56:37.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:56:37.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:37.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:56:37.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:56:37.118 -07 000000431 INF: Image SNR check: start
17-03-17 17:56:37.118 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:56:37.118 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:56:37.128 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:56:37.128 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:56:37.128 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=92.16]
17-03-17 17:56:37.128 -07 000000431 INF: Autofocus start
17-03-17 17:56:37.128 -07 000000431 INF: MeasureProfile start
17-03-17 17:56:37.138 -07 000000431 INF: MeasureProfile done
17-03-17 17:56:37.138 -07 000000431 INF: X=48  Z correction [um]=0.1739867
17-03-17 17:56:37.138 -07 000000431 INF: Autofocus finished
17-03-17 17:56:37.328 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:56:37.328 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:56:37.328 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.178841500410436. ----------
17-03-17 17:56:37.328 -07 000000610 INF: Cycle	7	Tile	1	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:56:37.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37617, sync = True, waitForSettling = True)
17-03-17 17:56:37.338 -07 000000610 INF: Z Motor: Moving to -0.172200 mm, started at -0.178842 mm, distance = 6.64 um
17-03-17 17:56:37.338 -07 000000610 INF: FPGA: Xmit ZDACW 37617\n [Z Motor]
17-03-17 17:56:37.338 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:56:37.348 -07 000000610 INF: FPGA: 'ZDACW 37617' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:37.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:56:37.348 -07 000000593 INF: FPGA: Recv ZDACR 37617
17-03-17 17:56:37.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:37.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:56:37.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:37.508 -07 000000626 INF: FPGA: Recv ZSGSRD 36098
17-03-17 17:56:37.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:37.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:37.518 -07 000000627 INF: FPGA: Recv ZSGSRD 36099
17-03-17 17:56:37.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:56:37.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:37.538 -07 000000486 INF: FPGA: Recv ZSGSRD 36090
17-03-17 17:56:37.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:56:37.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:37.548 -07 000000626 INF: FPGA: Recv ZSGSRD 36097
17-03-17 17:56:37.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:56:37.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:37.578 -07 000000627 INF: FPGA: Recv ZSGSRD 36095
17-03-17 17:56:37.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:56:37.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:37.588 -07 000000626 INF: FPGA: Recv ZSGSRD 36092
17-03-17 17:56:37.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:37.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:37.598 -07 000000409 INF: FPGA: Recv ZSGSRD 36098
17-03-17 17:56:37.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:37.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:37.608 -07 000000626 INF: FPGA: Recv ZSGSRD 36099
17-03-17 17:56:37.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:37.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:37.618 -07 000000431 INF: FPGA: Recv ZSGSRD 36090
17-03-17 17:56:37.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:37.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:37.628 -07 000000593 INF: FPGA: Recv ZSGSRD 36097
17-03-17 17:56:37.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:37.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:56:37.638 -07 000000593 INF: FPGA: Recv ZPIEZORD 32030
17-03-17 17:56:37.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:37.648 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.740 V. Piezo Error = -9.0 V.
17-03-17 17:56:37.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36096 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36097 (-171.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36090 (-171.3 uncal um), Max = 36099 (-171.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:56:37.648 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36096, posNoise = 3, negNoise = 6
17-03-17 17:56:37.648 -07 000000610 INF: Z Motor: After move to -0.172200, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:56:37.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 310 ms)
17-03-17 17:56:37.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:56:37.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:56:37.648 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:56:37.648 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:56:37.648 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:56:37.648 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:56:37.648 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:56:37.648 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:56:37.648 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:56:37.648 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:56:37.648 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:56:37.648 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 17:56:37.648 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:56:37.658 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:56:37.668 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 17:56:37.668 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:56:37.668 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 17:56:37.668 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:56:37.678 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:56:37.678 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:56:37.688 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:56:37.688 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-17 17:56:37.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37794 150\n [Camera]
17-03-17 17:56:37.888 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:56:38.278 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:56:38.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:56:38.278 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:56:38.278 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:56:38.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:56:38.278 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:56:38.288 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:56:38.288 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:56:38.418 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:56:38.418 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:56:38.688 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 17:56:38.688 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:56:38.688 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:38.688 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:56:38.698 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 17:56:38.698 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37794 776
17-03-17 17:56:38.698 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:56:38.808 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 17:56:38.808 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:56:38.808 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:38.808 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:56:38.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:56:38.808 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:56:38.808 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:56:38.808 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 17:56:38.808 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:56:38.818 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 536 ms.
17-03-17 17:56:38.828 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:56:38.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:56:38.828 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:56:38.828 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:56:38.828 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 17:56:39.208 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 17:56:39.208 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 17:56:39.208 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:39.218 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:56:39.218 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 17:56:39.228 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:56:39.228 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:56:39.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37794 150' command took 2 ms to send, 1536 ms to get response, and 1542 ms overall
17-03-17 17:56:39.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:56:39.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.172211713480138. ------
17-03-17 17:56:39.238 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 17:56:39.238 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 17:56:39.238 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:39.238 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:56:39.248 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:56:39.258 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 426 ms.
17-03-17 17:56:39.288 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17850 mm
17-03-17 17:56:39.288 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:56:40.248 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:56:40.248 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1000 ms to get response, and 1006 ms overall
17-03-17 17:56:40.248 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:56:40.248 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 17:56:40.248 -07 000000486 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 17:56:40.258 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:41.248 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38993, sync = True, waitForSettling = False)
17-03-17 17:56:41.248 -07 000000626 INF: Z Motor: Moving to -0.178499 mm, started at -0.172212 mm, distance = -6.29 um
17-03-17 17:56:41.248 -07 000000626 INF: FPGA: Xmit ZDACW 38993\n [Z Motor]
17-03-17 17:56:42.248 -07 000000458 INF: FPGA: Recv YRDPOS 122699
17-03-17 17:56:42.248 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:56:42.248 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:56:42.248 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:56:42.248 -07 000000626 INF: FPGA: 'ZDACW 38993' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 17:56:42.248 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1990 ms to get response, and 1999 ms overall
17-03-17 17:56:42.248 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:56:42.248 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1980 ms to get response, and 1998 ms overall
17-03-17 17:56:42.248 -07 000000486 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:42.248 -07 000000486 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:56:42.248 -07 000000486 INF: Y Motor: Moving 1330 steps2
17-03-17 17:56:42.248 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:56:42.248 -07 000000458 INF: FPGA: Recv ZDACR 38993
17-03-17 17:56:42.258 -07 000000626 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:56:42.258 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:56:42.258 -07 000000626 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 17:56:42.558 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 4.007176,
17-03-17 17:56:42.628 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 17:56:42.628 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 386 ms overall
17-03-17 17:56:42.658 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:42.658 -07 000000458 INF: FPGA: Recv YRDPOS 124382
17-03-17 17:56:42.668 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:56:42.668 -07 000000486 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:42.668 -07 000000486 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 17:56:42.668 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.831 mm, average velocity = 2.153 mm/sec
17-03-17 17:56:43.618 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:43.618 -07 000000626 INF: FPGA: Recv YRDPOS 124383
17-03-17 17:56:43.628 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:43.628 -07 000000486 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:43.638 -07 000000486 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:56:43.638 -07 000000486 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:56:43.638 -07 000000486 INF: Y Motor: Moved to 60.7339 after 3397 ms (table move)
17-03-17 17:56:43.648 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178499 mm (DAC = 38993)
17-03-17 17:56:43.648 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:43.648 -07 000000458 INF: FPGA: Recv ZSGSRD 37073
17-03-17 17:56:43.658 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:56:43.658 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:43.658 -07 000000486 INF: FPGA: Recv ZSGSRD 37075
17-03-17 17:56:43.668 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:43.668 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:43.668 -07 000000458 INF: FPGA: Recv ZSGSRD 37065
17-03-17 17:56:43.678 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:43.678 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:43.678 -07 000000593 INF: FPGA: Recv ZSGSRD 37074
17-03-17 17:56:43.688 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:43.688 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:43.688 -07 000000433 INF: FPGA: Recv ZSGSRD 37076
17-03-17 17:56:43.698 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:43.698 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:43.698 -07 000000480 INF: FPGA: Recv ZSGSRD 37079
17-03-17 17:56:43.708 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:43.708 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:43.708 -07 000000409 INF: FPGA: Recv ZSGSRD 37080
17-03-17 17:56:43.718 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:43.718 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:43.718 -07 000000433 INF: FPGA: Recv ZSGSRD 37078
17-03-17 17:56:43.728 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:43.728 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:43.728 -07 000000409 INF: FPGA: Recv ZSGSRD 37078
17-03-17 17:56:43.738 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:43.738 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:43.738 -07 000000486 INF: FPGA: Recv ZSGSRD 37070
17-03-17 17:56:43.748 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:43.748 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:56:43.748 -07 000000458 INF: FPGA: Recv ZPIEZORD 33329
17-03-17 17:56:43.758 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:43.758 -07 000000627 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.950 V. Piezo Error = -8.3 V.
17-03-17 17:56:43.758 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37075 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37076 (-177.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37065 (-177.5 uncal um), Max = 37080 (-177.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:56:43.758 -07 000000627 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37075, posNoise = 5, negNoise = 10
17-03-17 17:56:43.758 -07 000000627 INF: Z Motor: After move to -0.178499, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:56:43.758 -07 000000627 INF: Z Motor: Settle wait time = 2402 ms, measure time = 106 ms (allowed 150 ms), total time = 2508 ms
17-03-17 17:56:43.758 -07 000000627 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:56:43.808 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4515 ms
17-03-17 17:56:43.808 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:56:43.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:56:43.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:56:43.808 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:56:43.808 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:56:43.808 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:56:43.808 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:56:43.808 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:56:43.808 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:56:43.818 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:56:43.818 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:56:43.828 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 17:56:43.828 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:56:43.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:56:43.878 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:56:44.078 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:56:44.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:56:44.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:56:44.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:56:44.118 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:56:44.118 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:56:44.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 286 ms overall
17-03-17 17:56:44.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:56:44.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:44.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:56:44.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:56:44.218 -07 000000593 INF: Autofocus start
17-03-17 17:56:44.218 -07 000000593 INF: MeasureProfile start
17-03-17 17:56:44.218 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:56:44.218 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:56:44.228 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:56:44.228 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:56:44.228 -07 000000593 INF: MeasureProfile done
17-03-17 17:56:44.228 -07 000000593 INF: X=32  Z correction [um]=0.09220707
17-03-17 17:56:44.228 -07 000000593 INF: Autofocus finished
17-03-17 17:56:44.428 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:56:44.428 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:56:44.428 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.178501017166922. ----------
17-03-17 17:56:44.428 -07 000000610 INF: Cycle	7	Tile	2	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:56:44.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37526, sync = True, waitForSettling = True)
17-03-17 17:56:44.438 -07 000000610 INF: Z Motor: Moving to -0.171783 mm, started at -0.178501 mm, distance = 6.72 um
17-03-17 17:56:44.438 -07 000000610 INF: FPGA: Xmit ZDACW 37526\n [Z Motor]
17-03-17 17:56:44.438 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:56:44.448 -07 000000610 INF: FPGA: 'ZDACW 37526' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:56:44.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:56:44.448 -07 000000486 INF: FPGA: Recv ZDACR 37526
17-03-17 17:56:44.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:44.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:56:44.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:44.608 -07 000000626 INF: FPGA: Recv ZSGSRD 36030
17-03-17 17:56:44.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:56:44.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:44.618 -07 000000486 INF: FPGA: Recv ZSGSRD 36035
17-03-17 17:56:44.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:44.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:44.628 -07 000000627 INF: FPGA: Recv ZSGSRD 36029
17-03-17 17:56:44.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:44.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:44.638 -07 000000593 INF: FPGA: Recv ZSGSRD 36032
17-03-17 17:56:44.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:44.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:44.648 -07 000000480 INF: FPGA: Recv ZSGSRD 36028
17-03-17 17:56:44.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:44.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:44.658 -07 000000433 INF: FPGA: Recv ZSGSRD 36032
17-03-17 17:56:44.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:44.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:44.668 -07 000000486 INF: FPGA: Recv ZSGSRD 36035
17-03-17 17:56:44.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:44.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:44.678 -07 000000480 INF: FPGA: Recv ZSGSRD 36030
17-03-17 17:56:44.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:44.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:44.688 -07 000000458 INF: FPGA: Recv ZSGSRD 36037
17-03-17 17:56:44.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:44.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:44.698 -07 000000593 INF: FPGA: Recv ZSGSRD 36025
17-03-17 17:56:44.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:44.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:56:44.708 -07 000000486 INF: FPGA: Recv ZPIEZORD 31938
17-03-17 17:56:44.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:44.718 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.726 V. Piezo Error = -9.0 V.
17-03-17 17:56:44.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36031 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36031 (-170.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36025 (-170.9 uncal um), Max = 36037 (-171.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:56:44.718 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36031, posNoise = 6, negNoise = 6
17-03-17 17:56:44.718 -07 000000610 INF: Z Motor: After move to -0.171783, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:56:44.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:56:44.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:56:44.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:56:44.718 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:56:44.718 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:56:44.718 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:56:44.718 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:56:44.718 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:56:44.718 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:56:44.718 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:56:44.718 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:56:44.718 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:56:44.718 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:56:44.728 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:56:44.728 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:56:44.728 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:56:44.728 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:56:44.738 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:56:44.738 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:56:44.738 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 17:56:44.738 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:56:44.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37703 150\n [Camera]
17-03-17 17:56:44.938 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:56:45.338 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 17:56:45.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 17:56:45.338 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:56:45.338 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:56:45.338 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1052446768, 0x0, 391868352) start.
17-03-17 17:56:45.338 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 17:56:45.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 17:56:45.338 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:56:45.338 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:56:45.338 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1087869032, 0x0, 418435064) start.
17-03-17 17:56:45.528 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37703 776
17-03-17 17:56:45.678 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:56:45.718 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1052446768, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:56:45.718 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:56:45.718 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:45.718 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1087869032, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:56:45.718 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:56:45.718 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:45.718 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:56:45.718 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:56:45.718 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:56:45.728 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:56:45.868 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:56:45.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:56:45.868 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:56:45.868 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:56:45.868 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1123291296, 0x0, 391868352) start.
17-03-17 17:56:45.868 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:56:45.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:56:45.868 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:56:45.868 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:56:45.868 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:56:46.058 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:56:46.058 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:56:46.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37703 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-17 17:56:46.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:56:46.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.171794139690924. ------
17-03-17 17:56:46.058 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:56:46.058 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17839 mm
17-03-17 17:56:46.058 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:56:46.068 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:56:46.068 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:56:46.068 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:56:46.068 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 17:56:46.068 -07 000000458 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 17:56:46.078 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:46.248 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1123291296, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:56:46.248 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:56:46.248 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:46.248 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:56:46.248 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:56:46.248 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:46.258 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:56:46.258 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:56:46.258 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:56:46.258 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:56:46.268 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38970, sync = True, waitForSettling = False)
17-03-17 17:56:46.268 -07 000000593 INF: Z Motor: Moving to -0.178393 mm, started at -0.171794 mm, distance = -6.60 um
17-03-17 17:56:46.268 -07 000000593 INF: FPGA: Xmit ZDACW 38970\n [Z Motor]
17-03-17 17:56:46.268 -07 000000431 INF: FPGA: Recv YRDPOS 124383
17-03-17 17:56:46.268 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:56:46.268 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 17:56:46.268 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 189 ms to get response, and 205 ms overall
17-03-17 17:56:46.268 -07 000000458 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:46.268 -07 000000458 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:56:46.278 -07 000000458 INF: Y Motor: Moving 1342 steps-19
17-03-17 17:56:46.278 -07 000000593 INF: FPGA: 'ZDACW 38970' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:56:46.278 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:56:46.278 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 207 ms overall
17-03-17 17:56:46.288 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:56:46.288 -07 000000431 INF: FPGA: Recv ZDACR 38970
17-03-17 17:56:46.298 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:56:46.298 -07 000000593 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 17:56:46.548 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:56:46.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:56:46.648 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 17:56:46.648 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 17:56:46.688 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:46.688 -07 000000431 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:56:46.698 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:56:46.698 -07 000000458 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:46.698 -07 000000458 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:56:46.698 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.219 mm/sec
17-03-17 17:56:47.648 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:47.648 -07 000000480 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:56:47.658 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:56:47.658 -07 000000458 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:47.678 -07 000000458 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:56:47.678 -07 000000458 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:56:47.678 -07 000000458 INF: Y Motor: Moved to 61.5645 after 1606 ms (table move)
17-03-17 17:56:47.678 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178393 mm (DAC = 38970)
17-03-17 17:56:47.678 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:47.678 -07 000000480 INF: FPGA: Recv ZSGSRD 37061
17-03-17 17:56:47.688 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:56:47.688 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:47.688 -07 000000431 INF: FPGA: Recv ZSGSRD 37060
17-03-17 17:56:47.698 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:47.698 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:47.698 -07 000000431 INF: FPGA: Recv ZSGSRD 37058
17-03-17 17:56:47.708 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:47.708 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:47.708 -07 000000480 INF: FPGA: Recv ZSGSRD 37064
17-03-17 17:56:47.718 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:47.718 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:47.718 -07 000000593 INF: FPGA: Recv ZSGSRD 37058
17-03-17 17:56:47.728 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:47.728 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:47.728 -07 000000431 INF: FPGA: Recv ZSGSRD 37063
17-03-17 17:56:47.738 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:47.738 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:47.738 -07 000000593 INF: FPGA: Recv ZSGSRD 37068
17-03-17 17:56:47.748 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:47.748 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:47.748 -07 000000480 INF: FPGA: Recv ZSGSRD 37056
17-03-17 17:56:47.758 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:47.758 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:47.758 -07 000000593 INF: FPGA: Recv ZSGSRD 37059
17-03-17 17:56:47.768 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:47.768 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:47.768 -07 000000458 INF: FPGA: Recv ZSGSRD 37058
17-03-17 17:56:47.778 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:47.778 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:56:47.778 -07 000000458 INF: FPGA: Recv ZPIEZORD 33304
17-03-17 17:56:47.788 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:47.788 -07 000000409 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.946 V. Piezo Error = -8.3 V.
17-03-17 17:56:47.788 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37060 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37060 (-177.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37056 (-177.5 uncal um), Max = 37068 (-177.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:56:47.788 -07 000000409 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37060, posNoise = 8, negNoise = 4
17-03-17 17:56:47.788 -07 000000409 INF: Z Motor: After move to -0.178393, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:56:47.788 -07 000000409 INF: Z Motor: Settle wait time = 1409 ms, measure time = 105 ms (allowed 150 ms), total time = 1514 ms
17-03-17 17:56:47.788 -07 000000409 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 17:56:47.838 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1771 ms
17-03-17 17:56:47.838 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:56:47.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:56:47.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:56:47.838 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:56:47.838 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:56:47.838 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:56:47.838 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:56:47.848 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:56:47.848 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:56:47.848 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:56:47.848 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:56:47.858 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:56:47.858 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:56:47.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:56:47.908 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:56:47.928 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 4.038479,
17-03-17 17:56:48.108 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:56:48.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:56:48.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:56:48.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1175588624, 0x0, 559484976) start.
17-03-17 17:56:48.148 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:56:48.148 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 17:56:48.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 287 ms overall
17-03-17 17:56:48.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1175588624, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:56:48.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:48.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:56:48.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 17:56:48.248 -07 000000458 INF: Autofocus start
17-03-17 17:56:48.248 -07 000000458 INF: MeasureProfile start
17-03-17 17:56:48.258 -07 000000458 INF: MeasureProfile done
17-03-17 17:56:48.258 -07 000000458 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:56:48.258 -07 000000458 INF: Autofocus finished
17-03-17 17:56:48.268 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:56:48.268 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:56:48.278 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:56:48.278 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:56:48.478 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:56:48.478 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:56:48.478 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.178404653984796. ----------
17-03-17 17:56:48.478 -07 000000610 INF: Cycle	7	Tile	3	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:56:48.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37467, sync = True, waitForSettling = True)
17-03-17 17:56:48.488 -07 000000610 INF: Z Motor: Moving to -0.171513 mm, started at -0.178405 mm, distance = 6.89 um
17-03-17 17:56:48.488 -07 000000610 INF: FPGA: Xmit ZDACW 37467\n [Z Motor]
17-03-17 17:56:48.488 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:56:48.498 -07 000000610 INF: FPGA: 'ZDACW 37467' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:56:48.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:56:48.498 -07 000000593 INF: FPGA: Recv ZDACR 37467
17-03-17 17:56:48.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:48.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:56:48.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:48.658 -07 000000433 INF: FPGA: Recv ZSGSRD 35992
17-03-17 17:56:48.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:56:48.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:48.668 -07 000000593 INF: FPGA: Recv ZSGSRD 35995
17-03-17 17:56:48.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:48.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:48.678 -07 000000486 INF: FPGA: Recv ZSGSRD 35989
17-03-17 17:56:48.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:48.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:48.688 -07 000000626 INF: FPGA: Recv ZSGSRD 35991
17-03-17 17:56:48.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:48.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:48.698 -07 000000433 INF: FPGA: Recv ZSGSRD 35980
17-03-17 17:56:48.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:48.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:48.708 -07 000000626 INF: FPGA: Recv ZSGSRD 35993
17-03-17 17:56:48.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:48.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:48.718 -07 000000480 INF: FPGA: Recv ZSGSRD 35988
17-03-17 17:56:48.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:48.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:48.728 -07 000000627 INF: FPGA: Recv ZSGSRD 35988
17-03-17 17:56:48.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:48.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:48.738 -07 000000433 INF: FPGA: Recv ZSGSRD 35987
17-03-17 17:56:48.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:48.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:48.748 -07 000000431 INF: FPGA: Recv ZSGSRD 35990
17-03-17 17:56:48.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:48.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:56:48.758 -07 000000480 INF: FPGA: Recv ZPIEZORD 31892
17-03-17 17:56:48.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:48.768 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.717 V. Piezo Error = -9.0 V.
17-03-17 17:56:48.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35989 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35990 (-170.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35980 (-170.6 uncal um), Max = 35995 (-170.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:56:48.768 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35989, posNoise = 6, negNoise = 9
17-03-17 17:56:48.768 -07 000000610 INF: Z Motor: After move to -0.171513, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:56:48.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:56:48.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:56:48.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:56:48.768 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:56:48.768 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:56:48.768 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:56:48.768 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:56:48.768 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:56:48.768 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:56:48.768 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:56:48.768 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:56:48.768 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:56:48.768 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:56:48.778 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:56:48.778 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:56:48.778 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:56:48.778 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:56:48.788 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:56:48.788 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:56:48.788 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 17:56:48.788 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:56:48.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37644 150\n [Camera]
17-03-17 17:56:48.998 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:56:49.388 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:56:49.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:56:49.388 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:56:49.388 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:56:49.388 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) start.
17-03-17 17:56:49.388 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:56:49.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:56:49.388 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:56:49.388 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:56:49.388 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) start.
17-03-17 17:56:49.578 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37644 776
17-03-17 17:56:49.728 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:56:49.768 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:56:49.768 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:56:49.768 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:49.768 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:56:49.768 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:56:49.768 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:49.768 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:56:49.768 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:56:49.768 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:56:49.778 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:56:49.918 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:56:49.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:56:49.918 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:56:49.918 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:56:49.918 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 17:56:49.918 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:56:49.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:56:49.918 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:56:49.918 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:56:49.918 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 17:56:50.108 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:56:50.108 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:56:50.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37644 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 17:56:50.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:56:50.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.17152432278097. ------
17-03-17 17:56:50.118 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:56:50.118 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17769 mm
17-03-17 17:56:50.118 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:56:50.118 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 17:56:50.118 -07 000000458 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 17:56:50.128 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:50.298 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:56:50.298 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:56:50.298 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:50.298 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:56:50.298 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:56:50.298 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:50.308 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:56:50.308 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:56:50.308 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:56:50.318 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:56:50.328 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:56:50.328 -07 000000433 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:56:50.328 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38817, sync = True, waitForSettling = False)
17-03-17 17:56:50.328 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 191 ms to get response, and 203 ms overall
17-03-17 17:56:50.328 -07 000000458 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:50.328 -07 000000458 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:56:50.328 -07 000000458 INF: Y Motor: Moving 1341 steps-17
17-03-17 17:56:50.328 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 201 ms to get response, and 206 ms overall
17-03-17 17:56:50.328 -07 000000431 INF: Z Motor: Moving to -0.177693 mm, started at -0.171524 mm, distance = -6.17 um
17-03-17 17:56:50.328 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:56:50.338 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:56:50.348 -07 000000431 INF: FPGA: Xmit ZDACW 38817\n [Z Motor]
17-03-17 17:56:50.348 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:56:50.358 -07 000000431 INF: FPGA: 'ZDACW 38817' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 17:56:50.358 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:56:50.358 -07 000000433 INF: FPGA: Recv ZDACR 38817
17-03-17 17:56:50.368 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:50.368 -07 000000431 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 17:56:50.538 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:56:50.538 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 17:56:50.708 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 17:56:50.708 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-17 17:56:50.738 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:50.738 -07 000000433 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:56:50.748 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:56:50.748 -07 000000458 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:50.748 -07 000000458 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:56:50.748 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.217 mm/sec
17-03-17 17:56:51.548 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:56:51.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:56:51.698 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:51.698 -07 000000431 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:56:51.708 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:56:51.708 -07 000000458 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:51.718 -07 000000458 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:56:51.718 -07 000000458 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:56:51.718 -07 000000458 INF: Y Motor: Moved to 62.3960 after 1600 ms (table move)
17-03-17 17:56:51.728 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177693 mm (DAC = 38817)
17-03-17 17:56:51.728 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:51.728 -07 000000431 INF: FPGA: Recv ZSGSRD 36955
17-03-17 17:56:51.738 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:56:51.738 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:51.738 -07 000000480 INF: FPGA: Recv ZSGSRD 36959
17-03-17 17:56:51.748 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:51.748 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:51.748 -07 000000433 INF: FPGA: Recv ZSGSRD 36956
17-03-17 17:56:51.758 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:51.758 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:51.758 -07 000000480 INF: FPGA: Recv ZSGSRD 36942
17-03-17 17:56:51.768 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:51.768 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:51.768 -07 000000433 INF: FPGA: Recv ZSGSRD 36941
17-03-17 17:56:51.778 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:51.778 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:51.778 -07 000000433 INF: FPGA: Recv ZSGSRD 36952
17-03-17 17:56:51.788 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:51.788 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:51.788 -07 000000458 INF: FPGA: Recv ZSGSRD 36948
17-03-17 17:56:51.798 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:51.798 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:51.798 -07 000000433 INF: FPGA: Recv ZSGSRD 36952
17-03-17 17:56:51.808 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:51.808 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:51.808 -07 000000458 INF: FPGA: Recv ZSGSRD 36952
17-03-17 17:56:51.818 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:51.818 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:51.818 -07 000000431 INF: FPGA: Recv ZSGSRD 36954
17-03-17 17:56:51.828 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:51.828 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:56:51.828 -07 000000458 INF: FPGA: Recv ZPIEZORD 33174
17-03-17 17:56:51.838 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:51.838 -07 000000486 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.923 V. Piezo Error = -8.4 V.
17-03-17 17:56:51.838 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36951 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36952 (-176.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36941 (-176.7 uncal um), Max = 36959 (-176.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:56:51.838 -07 000000486 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36951, posNoise = 8, negNoise = 10
17-03-17 17:56:51.838 -07 000000486 INF: Z Motor: After move to -0.177693, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:56:51.838 -07 000000486 INF: Z Motor: Settle wait time = 1401 ms, measure time = 107 ms (allowed 150 ms), total time = 1508 ms
17-03-17 17:56:51.838 -07 000000486 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:56:51.888 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1765 ms
17-03-17 17:56:51.888 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:56:51.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:56:51.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:56:51.888 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:56:51.888 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:56:51.888 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:56:51.888 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:56:51.888 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:56:51.888 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:56:51.898 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:56:51.898 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:56:51.898 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:56:51.898 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:56:51.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:56:51.948 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:56:52.148 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:56:52.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:56:52.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:56:52.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) start.
17-03-17 17:56:52.188 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:56:52.188 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:56:52.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 17:56:52.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:56:52.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:52.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:56:52.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:56:52.288 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:56:52.288 -07 000000458 INF: Autofocus start
17-03-17 17:56:52.288 -07 000000458 INF: MeasureProfile start
17-03-17 17:56:52.288 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:56:52.298 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:56:52.298 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:56:52.298 -07 000000458 INF: MeasureProfile done
17-03-17 17:56:52.298 -07 000000458 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:56:52.298 -07 000000458 INF: Autofocus finished
17-03-17 17:56:52.498 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:56:52.498 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:56:52.508 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.177704414861344. ----------
17-03-17 17:56:52.508 -07 000000610 INF: Cycle	7	Tile	4	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:56:52.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37332, sync = True, waitForSettling = True)
17-03-17 17:56:52.508 -07 000000610 INF: Z Motor: Moving to -0.170895 mm, started at -0.177704 mm, distance = 6.81 um
17-03-17 17:56:52.508 -07 000000610 INF: FPGA: Xmit ZDACW 37332\n [Z Motor]
17-03-17 17:56:52.508 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:56:52.518 -07 000000610 INF: FPGA: 'ZDACW 37332' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:56:52.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:56:52.518 -07 000000627 INF: FPGA: Recv ZDACR 37332
17-03-17 17:56:52.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:52.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:56:52.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:52.678 -07 000000627 INF: FPGA: Recv ZSGSRD 35896
17-03-17 17:56:52.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:56:52.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:52.688 -07 000000458 INF: FPGA: Recv ZSGSRD 35890
17-03-17 17:56:52.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:52.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:52.698 -07 000000626 INF: FPGA: Recv ZSGSRD 35897
17-03-17 17:56:52.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:52.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:52.708 -07 000000458 INF: FPGA: Recv ZSGSRD 35889
17-03-17 17:56:52.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:52.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:52.718 -07 000000458 INF: FPGA: Recv ZSGSRD 35895
17-03-17 17:56:52.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:52.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:52.728 -07 000000593 INF: FPGA: Recv ZSGSRD 35890
17-03-17 17:56:52.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:52.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:52.738 -07 000000593 INF: FPGA: Recv ZSGSRD 35888
17-03-17 17:56:52.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:52.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:52.748 -07 000000409 INF: FPGA: Recv ZSGSRD 35899
17-03-17 17:56:52.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:52.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:52.758 -07 000000431 INF: FPGA: Recv ZSGSRD 35895
17-03-17 17:56:52.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:52.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:52.768 -07 000000593 INF: FPGA: Recv ZSGSRD 35894
17-03-17 17:56:52.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:52.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:56:52.778 -07 000000433 INF: FPGA: Recv ZPIEZORD 31778
17-03-17 17:56:52.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:52.788 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.696 V. Piezo Error = -9.1 V.
17-03-17 17:56:52.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35893 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35894 (-170.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35888 (-170.0 uncal um), Max = 35899 (-170.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:56:52.788 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35893, posNoise = 6, negNoise = 5
17-03-17 17:56:52.788 -07 000000610 INF: Z Motor: After move to -0.170895, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:56:52.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:56:52.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:56:52.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:56:52.788 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:56:52.788 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:56:52.798 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:56:52.798 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:56:52.798 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:56:52.798 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:56:52.798 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:56:52.798 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:56:52.798 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:56:52.798 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:56:52.798 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:56:52.798 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:56:52.798 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:56:52.798 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:56:52.808 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:56:52.808 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:56:52.808 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:56:52.808 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:56:52.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37509 150\n [Camera]
17-03-17 17:56:53.008 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:56:53.298 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 4.019446,
17-03-17 17:56:53.398 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:56:53.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:56:53.408 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:56:53.408 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:56:53.408 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2367226128, 0x0, 391868352) start.
17-03-17 17:56:53.408 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:56:53.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:56:53.408 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:56:53.408 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:56:53.408 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 17:56:53.588 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37509 776
17-03-17 17:56:53.738 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:56:53.788 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:56:53.788 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:56:53.788 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:53.788 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:56:53.788 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2367226128, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 17:56:53.788 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:56:53.788 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:53.788 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:56:53.788 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:56:53.798 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:56:53.928 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:56:53.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:56:53.928 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:56:53.928 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:56:53.928 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 17:56:53.938 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:56:53.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:56:53.938 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:56:53.938 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:56:53.938 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 17:56:54.118 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:56:54.128 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:56:54.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37509 150' command took 2 ms to send, 1310 ms to get response, and 1313 ms overall
17-03-17 17:56:54.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:56:54.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.170907598415361. ------
17-03-17 17:56:54.128 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:56:54.128 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17757 mm
17-03-17 17:56:54.128 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:56:54.128 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 17:56:54.128 -07 000000627 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 17:56:54.138 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38791, sync = True, waitForSettling = False)
17-03-17 17:56:54.138 -07 000000626 INF: Z Motor: Moving to -0.177574 mm, started at -0.170908 mm, distance = -6.67 um
17-03-17 17:56:54.138 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:54.138 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:56:54.138 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 17:56:54.138 -07 000000480 INF: FPGA: Recv YRDPOS 127788
17-03-17 17:56:54.148 -07 000000626 INF: FPGA: Xmit ZDACW 38791\n [Z Motor]
17-03-17 17:56:54.148 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:56:54.148 -07 000000627 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:54.148 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:56:54.148 -07 000000627 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:56:54.148 -07 000000627 INF: Y Motor: Moving 1338 steps-14
17-03-17 17:56:54.158 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:56:54.158 -07 000000626 INF: FPGA: 'ZDACW 38791' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:56:54.168 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:56:54.178 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:56:54.338 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 17:56:54.338 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 17:56:54.338 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:54.348 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 408 ms.
17-03-17 17:56:54.348 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 17:56:54.348 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:54.348 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 17:56:54.348 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 17:56:54.348 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:56:54.358 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 17:56:54.508 -07 000000569 INF: FPGA: Recv ZDACR 38791
17-03-17 17:56:54.508 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:56:54.508 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 341 ms to get response, and 368 ms overall
17-03-17 17:56:54.508 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 321 ms to get response, and 351 ms overall
17-03-17 17:56:54.508 -07 000000626 INF: Z Motor: MoveAbsStepped took 372 ms (did NOT wait for settling yet))
17-03-17 17:56:54.538 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 17:56:54.538 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 17:56:54.578 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:54.578 -07 000000409 INF: FPGA: Recv YRDPOS 129484
17-03-17 17:56:54.588 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:54.588 -07 000000627 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:54.588 -07 000000627 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 17:56:54.588 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.118 mm/sec
17-03-17 17:56:55.538 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:55.538 -07 000000409 INF: FPGA: Recv YRDPOS 129485
17-03-17 17:56:55.548 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:56:55.548 -07 000000627 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:55.568 -07 000000627 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:56:55.568 -07 000000627 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:56:55.568 -07 000000627 INF: Y Motor: Moved to 63.2251 after 1431 ms (table move)
17-03-17 17:56:55.568 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177574 mm (DAC = 38791)
17-03-17 17:56:55.568 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:55.568 -07 000000409 INF: FPGA: Recv ZSGSRD 36929
17-03-17 17:56:55.578 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:56:55.578 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:55.578 -07 000000627 INF: FPGA: Recv ZSGSRD 36925
17-03-17 17:56:55.588 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:55.588 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:55.588 -07 000000409 INF: FPGA: Recv ZSGSRD 36924
17-03-17 17:56:55.598 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:55.598 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:55.598 -07 000000626 INF: FPGA: Recv ZSGSRD 36927
17-03-17 17:56:55.608 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:55.608 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:55.608 -07 000000409 INF: FPGA: Recv ZSGSRD 36935
17-03-17 17:56:55.618 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:55.618 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:55.618 -07 000000626 INF: FPGA: Recv ZSGSRD 36945
17-03-17 17:56:55.628 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:55.628 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:55.628 -07 000000409 INF: FPGA: Recv ZSGSRD 36940
17-03-17 17:56:55.638 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:55.638 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:55.638 -07 000000409 INF: FPGA: Recv ZSGSRD 36932
17-03-17 17:56:55.648 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:55.648 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:55.648 -07 000000626 INF: FPGA: Recv ZSGSRD 36934
17-03-17 17:56:55.658 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:55.658 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:55.658 -07 000000569 INF: FPGA: Recv ZSGSRD 36926
17-03-17 17:56:55.668 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:55.668 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:56:55.668 -07 000000409 INF: FPGA: Recv ZPIEZORD 33158
17-03-17 17:56:55.678 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:55.678 -07 000000486 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.919 V. Piezo Error = -8.4 V.
17-03-17 17:56:55.678 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36932 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36930 (-176.7 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36924 (-176.6 uncal um), Max = 36945 (-176.8 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:56:55.678 -07 000000486 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36932, posNoise = 13, negNoise = 8
17-03-17 17:56:55.678 -07 000000486 INF: Z Motor: After move to -0.177574, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:56:55.678 -07 000000486 INF: Z Motor: Settle wait time = 1434 ms, measure time = 106 ms (allowed 150 ms), total time = 1540 ms
17-03-17 17:56:55.678 -07 000000486 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:56:55.728 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 17:56:55.728 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:56:55.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:56:55.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:56:55.728 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:56:55.728 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:56:55.728 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:56:55.728 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:56:55.728 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:56:55.728 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:56:55.738 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:56:55.738 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:56:55.738 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:56:55.738 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:56:55.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:56:55.788 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:56:55.988 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:56:55.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:56:55.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:56:55.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start.
17-03-17 17:56:56.028 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:56:56.028 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 17:56:56.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:56:56.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:56:56.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:56.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:56:56.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:56:56.228 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:56:56.228 -07 000000486 INF: Autofocus start
17-03-17 17:56:56.228 -07 000000486 INF: MeasureProfile start
17-03-17 17:56:56.228 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:56:56.238 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:56:56.238 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:56:56.238 -07 000000486 INF: MeasureProfile done
17-03-17 17:56:56.238 -07 000000486 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:56:56.238 -07 000000486 INF: Autofocus finished
17-03-17 17:56:56.438 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:56:56.438 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:56:56.438 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.177582354830651. ----------
17-03-17 17:56:56.448 -07 000000610 INF: Cycle	7	Tile	5	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:56:56.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37305, sync = True, waitForSettling = True)
17-03-17 17:56:56.448 -07 000000610 INF: Z Motor: Moving to -0.170771 mm, started at -0.177582 mm, distance = 6.81 um
17-03-17 17:56:56.448 -07 000000610 INF: FPGA: Xmit ZDACW 37305\n [Z Motor]
17-03-17 17:56:56.448 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 17:56:56.458 -07 000000610 INF: FPGA: 'ZDACW 37305' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:56:56.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:56:56.458 -07 000000486 INF: FPGA: Recv ZDACR 37305
17-03-17 17:56:56.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:56.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:56:56.548 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:56:56.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:56:56.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:56.618 -07 000000486 INF: FPGA: Recv ZSGSRD 35873
17-03-17 17:56:56.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:56:56.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:56.628 -07 000000458 INF: FPGA: Recv ZSGSRD 35879
17-03-17 17:56:56.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:56.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:56.638 -07 000000569 INF: FPGA: Recv ZSGSRD 35874
17-03-17 17:56:56.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:56.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:56.648 -07 000000458 INF: FPGA: Recv ZSGSRD 35873
17-03-17 17:56:56.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:56.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:56.658 -07 000000569 INF: FPGA: Recv ZSGSRD 35871
17-03-17 17:56:56.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:56.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:56.668 -07 000000458 INF: FPGA: Recv ZSGSRD 35874
17-03-17 17:56:56.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:56:56.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:56.678 -07 000000486 INF: FPGA: Recv ZSGSRD 35873
17-03-17 17:56:56.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:56.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:56.688 -07 000000458 INF: FPGA: Recv ZSGSRD 35874
17-03-17 17:56:56.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:56:56.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:56.698 -07 000000569 INF: FPGA: Recv ZSGSRD 35874
17-03-17 17:56:56.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:56.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:56.708 -07 000000409 INF: FPGA: Recv ZSGSRD 35877
17-03-17 17:56:56.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:56.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:56:56.718 -07 000000569 INF: FPGA: Recv ZPIEZORD 31732
17-03-17 17:56:56.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:56.728 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.692 V. Piezo Error = -9.1 V.
17-03-17 17:56:56.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35874 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35874 (-169.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35871 (-169.9 uncal um), Max = 35879 (-169.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:56:56.728 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35874, posNoise = 5, negNoise = 3
17-03-17 17:56:56.728 -07 000000610 INF: Z Motor: After move to -0.170771, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:56:56.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:56:56.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:56:56.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:56:56.728 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:56:56.728 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:56:56.728 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:56:56.728 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:56:56.728 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:56:56.728 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:56:56.728 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:56:56.728 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:56:56.728 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:56:56.728 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:56:56.738 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:56:56.738 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:56:56.738 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:56:56.738 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:56:56.748 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 17:56:56.748 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:56:56.748 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:56:56.748 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:56:56.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37482 150\n [Camera]
17-03-17 17:56:56.958 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:56:57.348 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:56:57.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:56:57.348 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:56:57.348 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:56:57.348 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 17:56:57.348 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:56:57.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:56:57.348 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:56:57.348 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:56:57.348 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 17:56:57.538 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37482 777
17-03-17 17:56:57.688 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:56:57.728 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 17:56:57.728 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:56:57.728 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:57.728 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 17:56:57.738 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:56:57.738 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:57.738 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:56:57.738 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:56:57.738 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:56:57.748 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:56:57.878 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:56:57.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:56:57.878 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:56:57.878 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:56:57.878 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 17:56:57.878 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:56:57.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:56:57.878 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:56:57.878 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:56:57.878 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 17:56:58.068 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:56:58.068 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:56:58.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37482 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-17 17:56:58.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:56:58.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.170785538384668. ------
17-03-17 17:56:58.078 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17691 mm
17-03-17 17:56:58.078 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:56:58.078 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:56:58.078 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:56:58.078 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 17:56:58.078 -07 000000458 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 17:56:58.078 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38645, sync = True, waitForSettling = False)
17-03-17 17:56:58.078 -07 000000627 INF: Z Motor: Moving to -0.176905 mm, started at -0.170786 mm, distance = -6.12 um
17-03-17 17:56:58.088 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:56:58.088 -07 000000627 INF: FPGA: Xmit ZDACW 38645\n [Z Motor]
17-03-17 17:56:58.088 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:56:58.098 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:58.098 -07 000000627 INF: FPGA: 'ZDACW 38645' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:56:58.098 -07 000000433 INF: FPGA: Recv YRDPOS 129485
17-03-17 17:56:58.108 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:56:58.108 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:56:58.108 -07 000000458 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:58.108 -07 000000458 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:56:58.108 -07 000000458 INF: Y Motor: Moving 1340 steps-16
17-03-17 17:56:58.118 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:56:58.118 -07 000000593 INF: FPGA: Recv ZDACR 38645
17-03-17 17:56:58.128 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:56:58.128 -07 000000627 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 17:56:58.128 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:56:58.258 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 17:56:58.258 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:56:58.258 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:58.268 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 17:56:58.268 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:56:58.268 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:56:58.268 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:56:58.268 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-17 17:56:58.268 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 17:56:58.278 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 17:56:58.308 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:56:58.308 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:56:58.508 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 17:56:58.508 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 17:56:58.538 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:58.538 -07 000000480 INF: FPGA: Recv YRDPOS 131189
17-03-17 17:56:58.548 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:56:58.548 -07 000000458 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:58.548 -07 000000458 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 17:56:58.548 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.838 mm, average velocity = 2.099 mm/sec
17-03-17 17:56:58.668 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 4.009895,
17-03-17 17:56:59.498 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:56:59.498 -07 000000409 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:56:59.508 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:59.508 -07 000000458 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:56:59.518 -07 000000458 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:56:59.518 -07 000000458 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:56:59.518 -07 000000458 INF: Y Motor: Moved to 64.0576 after 1442 ms (table move)
17-03-17 17:56:59.528 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176905 mm (DAC = 38645)
17-03-17 17:56:59.528 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:59.528 -07 000000433 INF: FPGA: Recv ZSGSRD 36822
17-03-17 17:56:59.538 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:56:59.538 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:59.538 -07 000000433 INF: FPGA: Recv ZSGSRD 36823
17-03-17 17:56:59.548 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:59.548 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:59.548 -07 000000433 INF: FPGA: Recv ZSGSRD 36833
17-03-17 17:56:59.558 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:59.558 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:59.558 -07 000000480 INF: FPGA: Recv ZSGSRD 36831
17-03-17 17:56:59.568 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:59.568 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:59.568 -07 000000480 INF: FPGA: Recv ZSGSRD 36827
17-03-17 17:56:59.578 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:59.578 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:59.578 -07 000000593 INF: FPGA: Recv ZSGSRD 36834
17-03-17 17:56:59.588 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:59.588 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:59.588 -07 000000627 INF: FPGA: Recv ZSGSRD 36829
17-03-17 17:56:59.598 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:59.598 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:59.598 -07 000000627 INF: FPGA: Recv ZSGSRD 36824
17-03-17 17:56:59.608 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:59.608 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:59.608 -07 000000458 INF: FPGA: Recv ZSGSRD 36827
17-03-17 17:56:59.618 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:59.618 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:56:59.618 -07 000000409 INF: FPGA: Recv ZSGSRD 36825
17-03-17 17:56:59.628 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:59.628 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:56:59.628 -07 000000627 INF: FPGA: Recv ZPIEZORD 33040
17-03-17 17:56:59.638 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:56:59.638 -07 000000569 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.897 V. Piezo Error = -8.4 V.
17-03-17 17:56:59.638 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36828 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36827 (-176.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36822 (-176.0 uncal um), Max = 36834 (-176.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:56:59.638 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36828, posNoise = 6, negNoise = 6
17-03-17 17:56:59.638 -07 000000569 INF: Z Motor: After move to -0.176905, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:56:59.638 -07 000000569 INF: Z Motor: Settle wait time = 1448 ms, measure time = 106 ms (allowed 150 ms), total time = 1554 ms
17-03-17 17:56:59.638 -07 000000569 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:56:59.688 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 17:56:59.688 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:56:59.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:56:59.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:56:59.698 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:56:59.698 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:56:59.698 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:56:59.698 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:56:59.698 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:56:59.698 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:56:59.698 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:56:59.698 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:56:59.708 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:56:59.708 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:56:59.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:56:59.758 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:56:59.948 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:56:59.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:56:59.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:56:59.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-17 17:56:59.988 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:56:59.998 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:56:59.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 17:57:00.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:57:00.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:00.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:57:00.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:57:00.098 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:00.098 -07 000000480 INF: Autofocus start
17-03-17 17:57:00.098 -07 000000480 INF: MeasureProfile start
17-03-17 17:57:00.108 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:00.108 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 17:57:00.108 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:57:00.118 -07 000000480 INF: MeasureProfile done
17-03-17 17:57:00.118 -07 000000480 INF: X=80  Z correction [um]=0.337546
17-03-17 17:57:00.118 -07 000000480 INF: Autofocus finished
17-03-17 17:57:00.308 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:57:00.308 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:57:00.318 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.176914236767907. ----------
17-03-17 17:57:00.318 -07 000000610 INF: Cycle	7	Tile	6	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:57:00.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37231, sync = True, waitForSettling = True)
17-03-17 17:57:00.318 -07 000000610 INF: Z Motor: Moving to -0.170433 mm, started at -0.176914 mm, distance = 6.48 um
17-03-17 17:57:00.318 -07 000000610 INF: FPGA: Xmit ZDACW 37231\n [Z Motor]
17-03-17 17:57:00.328 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:57:00.328 -07 000000610 INF: FPGA: 'ZDACW 37231' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:57:00.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:00.328 -07 000000486 INF: FPGA: Recv ZDACR 37231
17-03-17 17:57:00.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:00.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:57:00.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:00.488 -07 000000480 INF: FPGA: Recv ZSGSRD 35819
17-03-17 17:57:00.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:00.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:00.498 -07 000000627 INF: FPGA: Recv ZSGSRD 35823
17-03-17 17:57:00.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:00.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:00.508 -07 000000486 INF: FPGA: Recv ZSGSRD 35820
17-03-17 17:57:00.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:00.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:00.518 -07 000000480 INF: FPGA: Recv ZSGSRD 35824
17-03-17 17:57:00.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:00.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:00.528 -07 000000458 INF: FPGA: Recv ZSGSRD 35816
17-03-17 17:57:00.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:00.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:00.538 -07 000000409 INF: FPGA: Recv ZSGSRD 35824
17-03-17 17:57:00.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:00.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:00.548 -07 000000480 INF: FPGA: Recv ZSGSRD 35828
17-03-17 17:57:00.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:00.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:00.558 -07 000000627 INF: FPGA: Recv ZSGSRD 35821
17-03-17 17:57:00.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:00.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:00.568 -07 000000569 INF: FPGA: Recv ZSGSRD 35822
17-03-17 17:57:00.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:00.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:00.578 -07 000000486 INF: FPGA: Recv ZSGSRD 35817
17-03-17 17:57:00.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:00.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:00.588 -07 000000593 INF: FPGA: Recv ZPIEZORD 31684
17-03-17 17:57:00.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:00.598 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.681 V. Piezo Error = -9.1 V.
17-03-17 17:57:00.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35821 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35822 (-169.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35816 (-169.5 uncal um), Max = 35828 (-169.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:57:00.598 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35821, posNoise = 7, negNoise = 5
17-03-17 17:57:00.598 -07 000000610 INF: Z Motor: After move to -0.170433, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:00.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 17:57:00.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:00.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:00.598 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:00.598 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:00.598 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:57:00.598 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:00.598 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:57:00.598 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:57:00.598 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:00.598 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:57:00.598 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:57:00.598 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:57:00.608 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:00.608 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:57:00.608 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:57:00.608 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:57:00.628 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 19 ms.
17-03-17 17:57:00.628 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 17:57:00.628 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-17 17:57:00.628 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 17:57:00.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37408 150\n [Camera]
17-03-17 17:57:00.828 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:57:01.218 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:57:01.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:57:01.218 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:01.218 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:01.218 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2728591576, 0x0, 391868352) start.
17-03-17 17:57:01.218 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:57:01.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:57:01.218 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:01.368 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:01.368 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 17:57:01.408 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37408 776
17-03-17 17:57:01.548 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:57:01.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:57:01.558 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:57:01.618 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2728591576, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 17:57:01.618 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 17:57:01.618 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:01.618 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:57:01.618 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:57:01.738 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:57:01.738 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:57:01.738 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:01.748 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:57:01.748 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:57:01.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:57:01.748 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:01.748 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:57:01.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:57:01.748 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 530 ms.
17-03-17 17:57:01.748 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:01.868 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:01.868 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 17:57:01.868 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:01.868 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:57:01.938 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:57:01.938 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:57:01.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37408 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 17:57:01.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:57:01.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.170445055141154. ------
17-03-17 17:57:01.948 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17686 mm
17-03-17 17:57:01.948 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:57:01.948 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:01.948 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 17:57:01.948 -07 000000480 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 17:57:01.948 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38636, sync = True, waitForSettling = False)
17-03-17 17:57:01.948 -07 000000486 INF: Z Motor: Moving to -0.176864 mm, started at -0.170445 mm, distance = -6.42 um
17-03-17 17:57:01.948 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:01.958 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:57:01.958 -07 000000486 INF: FPGA: Xmit ZDACW 38636\n [Z Motor]
17-03-17 17:57:01.958 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:57:01.968 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:01.968 -07 000000486 INF: FPGA: 'ZDACW 38636' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:57:01.968 -07 000000433 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:57:01.978 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:57:01.978 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:57:01.978 -07 000000480 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:01.978 -07 000000480 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:57:01.978 -07 000000480 INF: Y Motor: Moving 1336 steps-11
17-03-17 17:57:01.988 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:01.988 -07 000000626 INF: FPGA: Recv ZDACR 38636
17-03-17 17:57:01.998 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:57:01.998 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:57:01.998 -07 000000486 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 17:57:02.178 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:57:02.178 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:57:02.248 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:57:02.248 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:57:02.248 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:02.248 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:57:02.248 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:57:02.248 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:02.248 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:02.248 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:02.248 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 17:57:02.258 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-17 17:57:02.368 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 17:57:02.368 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:57:02.398 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:02.408 -07 000000627 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:57:02.408 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:57:02.408 -07 000000480 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:02.408 -07 000000480 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:57:02.408 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.103 mm/sec
17-03-17 17:57:03.358 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:03.358 -07 000000486 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:57:03.368 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:03.368 -07 000000480 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:03.388 -07 000000480 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:57:03.388 -07 000000480 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:57:03.398 -07 000000480 INF: Y Motor: Moved to 64.8794 after 1444 ms (table move)
17-03-17 17:57:03.398 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176864 mm (DAC = 38636)
17-03-17 17:57:03.398 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:03.398 -07 000000627 INF: FPGA: Recv ZSGSRD 36819
17-03-17 17:57:03.408 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:57:03.408 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:03.408 -07 000000433 INF: FPGA: Recv ZSGSRD 36814
17-03-17 17:57:03.418 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:03.418 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:03.418 -07 000000501 INF: FPGA: Recv ZSGSRD 36818
17-03-17 17:57:03.428 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:03.428 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:03.428 -07 000000433 INF: FPGA: Recv ZSGSRD 36824
17-03-17 17:57:03.438 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:03.438 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:03.438 -07 000000486 INF: FPGA: Recv ZSGSRD 36815
17-03-17 17:57:03.448 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:03.448 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:03.448 -07 000000480 INF: FPGA: Recv ZSGSRD 36828
17-03-17 17:57:03.458 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:03.458 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:03.458 -07 000000433 INF: FPGA: Recv ZSGSRD 36822
17-03-17 17:57:03.468 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:03.468 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:03.468 -07 000000486 INF: FPGA: Recv ZSGSRD 36821
17-03-17 17:57:03.478 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:03.478 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:03.478 -07 000000433 INF: FPGA: Recv ZSGSRD 36809
17-03-17 17:57:03.488 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:03.488 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:03.488 -07 000000480 INF: FPGA: Recv ZSGSRD 36816
17-03-17 17:57:03.498 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:03.498 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:03.498 -07 000000486 INF: FPGA: Recv ZPIEZORD 33051
17-03-17 17:57:03.508 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:03.508 -07 000000593 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.895 V. Piezo Error = -8.3 V.
17-03-17 17:57:03.508 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36819 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36818 (-176.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36809 (-175.9 uncal um), Max = 36828 (-176.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:57:03.508 -07 000000593 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36819, posNoise = 9, negNoise = 10
17-03-17 17:57:03.508 -07 000000593 INF: Z Motor: After move to -0.176864, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:03.508 -07 000000593 INF: Z Motor: Settle wait time = 1447 ms, measure time = 107 ms (allowed 150 ms), total time = 1554 ms
17-03-17 17:57:03.508 -07 000000593 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:57:03.558 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 17:57:03.558 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:57:03.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:03.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:03.558 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:03.558 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:03.558 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:57:03.558 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:03.568 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:03.568 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:57:03.568 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:03.568 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:57:03.568 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:57:03.578 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:57:03.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:57:03.618 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:57:03.818 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:57:03.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:57:03.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:57:03.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:57:03.858 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:57:03.858 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 17:57:03.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 17:57:03.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:57:03.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:03.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:57:03.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:57:03.958 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:03.958 -07 000000626 INF: Autofocus start
17-03-17 17:57:03.958 -07 000000626 INF: MeasureProfile start
17-03-17 17:57:03.958 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:03.968 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:57:03.968 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:57:03.968 -07 000000626 INF: MeasureProfile done
17-03-17 17:57:03.968 -07 000000626 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 17:57:03.968 -07 000000626 INF: Autofocus finished
17-03-17 17:57:04.038 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.978563,
17-03-17 17:57:04.168 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:57:04.168 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:57:04.168 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.176856418858632. ----------
17-03-17 17:57:04.168 -07 000000610 INF: Cycle	7	Tile	7	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:57:04.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37116, sync = True, waitForSettling = True)
17-03-17 17:57:04.178 -07 000000610 INF: Z Motor: Moving to -0.169906 mm, started at -0.176856 mm, distance = 6.95 um
17-03-17 17:57:04.178 -07 000000610 INF: FPGA: Xmit ZDACW 37116\n [Z Motor]
17-03-17 17:57:04.178 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:57:04.188 -07 000000610 INF: FPGA: 'ZDACW 37116' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:04.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:04.188 -07 000000626 INF: FPGA: Recv ZDACR 37116
17-03-17 17:57:04.198 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:04.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:57:04.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:04.358 -07 000000476 INF: FPGA: Recv ZSGSRD 35737
17-03-17 17:57:04.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 17:57:04.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:04.378 -07 000000448 INF: FPGA: Recv ZSGSRD 35740
17-03-17 17:57:04.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:57:04.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:04.408 -07 000000626 INF: FPGA: Recv ZSGSRD 35736
17-03-17 17:57:04.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:57:04.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:04.418 -07 000000448 INF: FPGA: Recv ZSGSRD 35738
17-03-17 17:57:04.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:04.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:04.438 -07 000000478 INF: FPGA: Recv ZSGSRD 35736
17-03-17 17:57:04.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:57:04.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:04.448 -07 000000626 INF: FPGA: Recv ZSGSRD 35738
17-03-17 17:57:04.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:04.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:04.458 -07 000000627 INF: FPGA: Recv ZSGSRD 35737
17-03-17 17:57:04.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:04.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:04.468 -07 000000476 INF: FPGA: Recv ZSGSRD 35741
17-03-17 17:57:04.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:04.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:04.478 -07 000000569 INF: FPGA: Recv ZSGSRD 35742
17-03-17 17:57:04.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:04.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:04.488 -07 000000626 INF: FPGA: Recv ZSGSRD 35741
17-03-17 17:57:04.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:04.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:04.498 -07 000000593 INF: FPGA: Recv ZPIEZORD 31578
17-03-17 17:57:04.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:04.508 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -9.2 V.
17-03-17 17:57:04.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35739 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35738 (-169.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35736 (-169.0 uncal um), Max = 35742 (-169.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:57:04.508 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35739, posNoise = 3, negNoise = 3
17-03-17 17:57:04.508 -07 000000610 INF: Z Motor: After move to -0.169906, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:04.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-17 17:57:04.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:04.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:04.508 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:04.508 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:57:04.508 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:04.508 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:04.508 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:57:04.508 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:57:04.508 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:04.508 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 17:57:04.508 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:57:04.508 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:57:04.518 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:57:04.518 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:57:04.518 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:57:04.518 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:57:04.528 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:57:04.528 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:57:04.528 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 17:57:04.528 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:57:04.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37292 150\n [Camera]
17-03-17 17:57:04.728 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:57:05.118 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:57:05.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:57:05.118 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:05.118 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:57:05.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:57:05.128 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:05.128 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:05.128 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 17:57:05.128 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:05.128 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 17:57:05.308 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37292 776
17-03-17 17:57:05.458 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:57:05.498 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:57:05.498 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:57:05.498 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:05.498 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:57:05.498 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 17:57:05.508 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:05.508 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:57:05.508 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:05.508 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:57:05.518 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:57:05.648 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:57:05.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:57:05.648 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:05.658 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:57:05.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:57:05.658 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:05.658 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:05.658 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2759608536, 0x0, 418435064) start.
17-03-17 17:57:05.658 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:05.658 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2724186272, 0x0, 391868352) start.
17-03-17 17:57:05.838 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 17:57:05.838 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:57:05.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37292 150' command took 2 ms to send, 1309 ms to get response, and 1313 ms overall
17-03-17 17:57:05.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:57:05.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.16991826974553. ------
17-03-17 17:57:05.848 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17643 mm
17-03-17 17:57:05.848 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:57:05.848 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:05.848 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 17:57:05.848 -07 000000627 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 17:57:05.848 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38541, sync = True, waitForSettling = False)
17-03-17 17:57:05.848 -07 000000478 INF: Z Motor: Moving to -0.176429 mm, started at -0.169918 mm, distance = -6.51 um
17-03-17 17:57:05.848 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:05.858 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:57:05.858 -07 000000478 INF: FPGA: Xmit ZDACW 38541\n [Z Motor]
17-03-17 17:57:05.858 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:57:05.868 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:05.868 -07 000000478 INF: FPGA: 'ZDACW 38541' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:57:05.868 -07 000000480 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:57:05.878 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:57:05.878 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:57:05.878 -07 000000627 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:05.878 -07 000000627 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:57:05.878 -07 000000627 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:57:05.888 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:05.888 -07 000000458 INF: FPGA: Recv ZDACR 38541
17-03-17 17:57:05.898 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:57:05.898 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:57:05.898 -07 000000478 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 17:57:06.038 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2759608536, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 17:57:06.038 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 17:57:06.038 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:06.038 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2724186272, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 17:57:06.038 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:57:06.038 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:06.048 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:06.048 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:06.048 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:57:06.048 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:57:06.078 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:57:06.078 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 17:57:06.268 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 17:57:06.268 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:57:06.308 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:06.308 -07 000000431 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:57:06.318 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:06.318 -07 000000627 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:06.318 -07 000000627 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 17:57:06.318 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.119 mm/sec
17-03-17 17:57:06.548 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:57:06.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:57:07.268 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:07.268 -07 000000478 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:57:07.278 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:07.278 -07 000000627 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:07.298 -07 000000627 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:57:07.298 -07 000000627 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:57:07.298 -07 000000627 INF: Y Motor: Moved to 65.7148 after 1447 ms (table move)
17-03-17 17:57:07.298 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176429 mm (DAC = 38541)
17-03-17 17:57:07.298 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:07.308 -07 000000627 INF: FPGA: Recv ZSGSRD 36742
17-03-17 17:57:07.308 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 17:57:07.308 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:07.308 -07 000000478 INF: FPGA: Recv ZSGSRD 36754
17-03-17 17:57:07.318 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:57:07.318 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:07.318 -07 000000478 INF: FPGA: Recv ZSGSRD 36752
17-03-17 17:57:07.328 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:07.328 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:07.328 -07 000000569 INF: FPGA: Recv ZSGSRD 36760
17-03-17 17:57:07.338 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:07.338 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:07.338 -07 000000569 INF: FPGA: Recv ZSGSRD 36752
17-03-17 17:57:07.348 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:07.348 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:07.348 -07 000000478 INF: FPGA: Recv ZSGSRD 36759
17-03-17 17:57:07.358 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:07.358 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:07.358 -07 000000409 INF: FPGA: Recv ZSGSRD 36755
17-03-17 17:57:07.368 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:07.368 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:07.368 -07 000000480 INF: FPGA: Recv ZSGSRD 36762
17-03-17 17:57:07.378 -07 000000593 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:07.378 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:07.378 -07 000000627 INF: FPGA: Recv ZSGSRD 36754
17-03-17 17:57:07.388 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:07.388 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:07.388 -07 000000458 INF: FPGA: Recv ZSGSRD 36746
17-03-17 17:57:07.398 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:07.398 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:07.398 -07 000000478 INF: FPGA: Recv ZPIEZORD 32963
17-03-17 17:57:07.408 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:07.408 -07 000000593 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.4 V.
17-03-17 17:57:07.408 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36754 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36754 (-175.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36742 (-175.5 uncal um), Max = 36762 (-175.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 17:57:07.408 -07 000000593 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36754, posNoise = 8, negNoise = 12
17-03-17 17:57:07.408 -07 000000593 INF: Z Motor: After move to -0.176429, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:07.408 -07 000000593 INF: Z Motor: Settle wait time = 1449 ms, measure time = 103 ms (allowed 150 ms), total time = 1552 ms
17-03-17 17:57:07.408 -07 000000593 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 17:57:07.458 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 17:57:07.458 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:57:07.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:07.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:07.458 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:57:07.458 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:07.458 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:07.458 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:07.458 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:07.458 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:57:07.468 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:07.468 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:57:07.478 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:57:07.478 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:57:07.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:57:07.518 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:57:07.718 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:57:07.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:57:07.788 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:57:07.788 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:57:07.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 307 ms to get response, and 315 ms overall
17-03-17 17:57:07.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:57:07.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) start.
17-03-17 17:57:07.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:57:07.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:07.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:57:07.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 17:57:07.988 -07 000000569 INF: Autofocus start
17-03-17 17:57:07.988 -07 000000569 INF: MeasureProfile start
17-03-17 17:57:07.988 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:07.988 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:07.998 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:57:07.998 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:57:08.008 -07 000000569 INF: MeasureProfile done
17-03-17 17:57:08.008 -07 000000569 INF: X=64  Z correction [um]=0.2557664
17-03-17 17:57:08.008 -07 000000569 INF: Autofocus finished
17-03-17 17:57:08.198 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:57:08.198 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:57:08.198 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.176438845069417. ----------
17-03-17 17:57:08.198 -07 000000610 INF: Cycle	7	Tile	8	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:57:08.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37109, sync = True, waitForSettling = True)
17-03-17 17:57:08.208 -07 000000610 INF: Z Motor: Moving to -0.169874 mm, started at -0.176439 mm, distance = 6.56 um
17-03-17 17:57:08.208 -07 000000610 INF: FPGA: Xmit ZDACW 37109\n [Z Motor]
17-03-17 17:57:08.208 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 17:57:08.218 -07 000000610 INF: FPGA: 'ZDACW 37109' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:57:08.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:08.218 -07 000000431 INF: FPGA: Recv ZDACR 37109
17-03-17 17:57:08.228 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:08.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:57:08.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:08.378 -07 000000476 INF: FPGA: Recv ZSGSRD 35738
17-03-17 17:57:08.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:08.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:08.388 -07 000000431 INF: FPGA: Recv ZSGSRD 35735
17-03-17 17:57:08.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:08.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:08.398 -07 000000476 INF: FPGA: Recv ZSGSRD 35731
17-03-17 17:57:08.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:08.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:08.408 -07 000000458 INF: FPGA: Recv ZSGSRD 35727
17-03-17 17:57:08.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:08.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:08.418 -07 000000476 INF: FPGA: Recv ZSGSRD 35731
17-03-17 17:57:08.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:08.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:08.428 -07 000000476 INF: FPGA: Recv ZSGSRD 35733
17-03-17 17:57:08.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:08.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:08.438 -07 000000458 INF: FPGA: Recv ZSGSRD 35733
17-03-17 17:57:08.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:08.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:08.448 -07 000000476 INF: FPGA: Recv ZSGSRD 35732
17-03-17 17:57:08.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:08.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:08.458 -07 000000478 INF: FPGA: Recv ZSGSRD 35735
17-03-17 17:57:08.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:08.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:08.468 -07 000000476 INF: FPGA: Recv ZSGSRD 35736
17-03-17 17:57:08.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:08.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:08.478 -07 000000478 INF: FPGA: Recv ZPIEZORD 31588
17-03-17 17:57:08.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:08.488 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.662 V. Piezo Error = -9.1 V.
17-03-17 17:57:08.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35733 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35733 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35727 (-169.0 uncal um), Max = 35738 (-169.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:57:08.488 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35733, posNoise = 5, negNoise = 6
17-03-17 17:57:08.488 -07 000000610 INF: Z Motor: After move to -0.169874, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:08.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:57:08.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:08.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:08.488 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:08.488 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:08.488 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:57:08.488 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:08.488 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:57:08.488 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:57:08.488 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:08.488 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:57:08.488 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:57:08.488 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:57:08.488 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:57:08.498 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:57:08.498 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:57:08.498 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:57:08.498 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:57:08.498 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:57:08.498 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:57:08.498 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:57:08.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37286 150\n [Camera]
17-03-17 17:57:08.708 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 17:57:09.098 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:57:09.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:57:09.098 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:09.098 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:09.098 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1049759792, 0x0, 391868352) start.
17-03-17 17:57:09.098 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:57:09.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:57:09.098 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:09.098 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:09.098 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1085182056, 0x0, 418435064) start.
17-03-17 17:57:09.288 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37286 776
17-03-17 17:57:09.408 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.99219,
17-03-17 17:57:09.438 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 17:57:09.478 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1085182056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:57:09.478 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:57:09.478 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:09.478 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1049759792, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:57:09.478 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:57:09.478 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:09.478 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:09.478 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:09.478 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:57:09.488 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:57:09.628 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:57:09.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:57:09.628 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:09.628 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:09.628 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1120604320, 0x0, 391868352) start.
17-03-17 17:57:09.628 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:57:09.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:57:09.628 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:09.628 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:09.628 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:57:09.818 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:57:09.818 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:57:09.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37286 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-17 17:57:09.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:57:09.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.169879724472679. ------
17-03-17 17:57:09.828 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17618 mm
17-03-17 17:57:09.828 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:57:09.828 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 17:57:09.828 -07 000000593 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 17:57:09.828 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38486, sync = True, waitForSettling = False)
17-03-17 17:57:09.828 -07 000000431 INF: Z Motor: Moving to -0.176178 mm, started at -0.169880 mm, distance = -6.30 um
17-03-17 17:57:09.838 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:09.838 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:09.848 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:57:09.848 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:09.848 -07 000000409 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:57:09.858 -07 000000431 INF: FPGA: Xmit ZDACW 38486\n [Z Motor]
17-03-17 17:57:09.858 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:57:09.858 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 17:57:09.858 -07 000000593 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:09.858 -07 000000593 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:57:09.858 -07 000000593 INF: Y Motor: Moving 1340 steps-16
17-03-17 17:57:09.868 -07 000000431 INF: FPGA: 'ZDACW 38486' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-17 17:57:09.878 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:57:09.888 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:57:09.898 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:09.898 -07 000000486 INF: FPGA: Recv ZDACR 38486
17-03-17 17:57:09.908 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 17:57:09.908 -07 000000431 INF: Z Motor: MoveAbsStepped took 75 ms (did NOT wait for settling yet))
17-03-17 17:57:10.018 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1120604320, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 17:57:10.018 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:57:10.018 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:10.018 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 17:57:10.018 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:57:10.018 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:10.018 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:57:10.028 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 17:57:10.028 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:57:10.028 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 17:57:10.078 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:57:10.078 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 17:57:10.258 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 17:57:10.258 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 404 ms overall
17-03-17 17:57:10.298 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:10.298 -07 000000448 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:57:10.308 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:57:10.308 -07 000000593 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:10.308 -07 000000593 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:57:10.308 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.838 mm, average velocity = 2.074 mm/sec
17-03-17 17:57:11.258 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:11.258 -07 000000486 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:57:11.268 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:11.268 -07 000000593 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:11.288 -07 000000593 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:57:11.288 -07 000000593 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:57:11.288 -07 000000593 INF: Y Motor: Moved to 66.5396 after 1458 ms (table move)
17-03-17 17:57:11.288 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176178 mm (DAC = 38486)
17-03-17 17:57:11.288 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:11.288 -07 000000482 INF: FPGA: Recv ZSGSRD 36714
17-03-17 17:57:11.298 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:57:11.298 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:11.298 -07 000000476 INF: FPGA: Recv ZSGSRD 36712
17-03-17 17:57:11.308 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:11.308 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:11.308 -07 000000459 INF: FPGA: Recv ZSGSRD 36710
17-03-17 17:57:11.318 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:11.318 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:11.318 -07 000000433 INF: FPGA: Recv ZSGSRD 36716
17-03-17 17:57:11.328 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:11.328 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:11.328 -07 000000486 INF: FPGA: Recv ZSGSRD 36720
17-03-17 17:57:11.338 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:11.338 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:11.338 -07 000000458 INF: FPGA: Recv ZSGSRD 36720
17-03-17 17:57:11.348 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:11.348 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:11.348 -07 000000433 INF: FPGA: Recv ZSGSRD 36715
17-03-17 17:57:11.358 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:11.358 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:11.358 -07 000000459 INF: FPGA: Recv ZSGSRD 36707
17-03-17 17:57:11.368 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:11.368 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:11.368 -07 000000623 INF: FPGA: Recv ZSGSRD 36715
17-03-17 17:57:11.378 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:11.378 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:11.378 -07 000000486 INF: FPGA: Recv ZSGSRD 36709
17-03-17 17:57:11.388 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:11.388 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:11.388 -07 000000433 INF: FPGA: Recv ZPIEZORD 32930
17-03-17 17:57:11.398 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:11.398 -07 000000569 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.873 V. Piezo Error = -8.4 V.
17-03-17 17:57:11.398 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36714 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36714 (-175.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36707 (-175.2 uncal um), Max = 36720 (-175.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:57:11.398 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36714, posNoise = 6, negNoise = 7
17-03-17 17:57:11.398 -07 000000569 INF: Z Motor: After move to -0.176178, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:11.398 -07 000000569 INF: Z Motor: Settle wait time = 1461 ms, measure time = 105 ms (allowed 150 ms), total time = 1566 ms
17-03-17 17:57:11.398 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 17:57:11.448 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-17 17:57:11.448 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:57:11.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:11.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:11.448 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:11.448 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:57:11.448 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:11.448 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:11.458 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:57:11.458 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:57:11.458 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:11.458 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:57:11.458 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:57:11.458 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:57:11.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:57:11.508 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:57:11.548 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:57:11.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:57:11.708 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:57:11.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:57:11.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:57:11.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1156026584, 0x0, 559484976) start.
17-03-17 17:57:11.748 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:57:11.748 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:57:11.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:57:11.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1156026584, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:57:11.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:11.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:57:11.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:57:11.848 -07 000000576 INF: Autofocus start
17-03-17 17:57:11.848 -07 000000576 INF: MeasureProfile start
17-03-17 17:57:11.848 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:11.848 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:11.858 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:57:11.858 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:57:11.858 -07 000000576 INF: MeasureProfile done
17-03-17 17:57:11.858 -07 000000576 INF: X=32  Z correction [um]=0.09220707
17-03-17 17:57:11.858 -07 000000576 INF: Autofocus finished
17-03-17 17:57:12.058 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:57:12.058 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:57:12.058 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.176181876583747. ----------
17-03-17 17:57:12.068 -07 000000610 INF: Cycle	7	Tile	9	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:57:12.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37018, sync = True, waitForSettling = True)
17-03-17 17:57:12.068 -07 000000610 INF: Z Motor: Moving to -0.169458 mm, started at -0.176182 mm, distance = 6.72 um
17-03-17 17:57:12.068 -07 000000610 INF: FPGA: Xmit ZDACW 37018\n [Z Motor]
17-03-17 17:57:12.068 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:57:12.078 -07 000000610 INF: FPGA: 'ZDACW 37018' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:57:12.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:12.078 -07 000000593 INF: FPGA: Recv ZDACR 37018
17-03-17 17:57:12.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:12.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:57:12.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:12.238 -07 000000482 INF: FPGA: Recv ZSGSRD 35665
17-03-17 17:57:12.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:12.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:12.248 -07 000000476 INF: FPGA: Recv ZSGSRD 35670
17-03-17 17:57:12.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:12.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:12.258 -07 000000478 INF: FPGA: Recv ZSGSRD 35669
17-03-17 17:57:12.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:12.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:12.268 -07 000000433 INF: FPGA: Recv ZSGSRD 35668
17-03-17 17:57:12.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:12.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:12.278 -07 000000431 INF: FPGA: Recv ZSGSRD 35671
17-03-17 17:57:12.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:12.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:12.288 -07 000000627 INF: FPGA: Recv ZSGSRD 35666
17-03-17 17:57:12.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:12.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:12.298 -07 000000448 INF: FPGA: Recv ZSGSRD 35670
17-03-17 17:57:12.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:12.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:12.308 -07 000000409 INF: FPGA: Recv ZSGSRD 35672
17-03-17 17:57:12.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:12.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:12.318 -07 000000623 INF: FPGA: Recv ZSGSRD 35672
17-03-17 17:57:12.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:12.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:12.328 -07 000000486 INF: FPGA: Recv ZSGSRD 35671
17-03-17 17:57:12.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:12.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:12.338 -07 000000431 INF: FPGA: Recv ZPIEZORD 31521
17-03-17 17:57:12.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:12.348 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -9.1 V.
17-03-17 17:57:12.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35669 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35670 (-168.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35665 (-168.6 uncal um), Max = 35672 (-168.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:57:12.348 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35669, posNoise = 3, negNoise = 4
17-03-17 17:57:12.348 -07 000000610 INF: Z Motor: After move to -0.169458, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:12.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:57:12.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:12.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:12.348 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:12.348 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:12.348 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:57:12.348 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:57:12.348 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:57:12.348 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:12.348 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:57:12.348 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:57:12.348 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:12.348 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:57:12.358 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:57:12.358 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:57:12.358 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:12.358 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:57:12.368 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:57:12.368 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:57:12.368 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:57:12.368 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:57:12.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37195 150\n [Camera]
17-03-17 17:57:12.568 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:57:12.958 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:57:12.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:57:12.958 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:12.958 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:12.958 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 17:57:12.958 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:57:12.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:57:12.958 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:12.958 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:12.958 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 17:57:13.148 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37195 776
17-03-17 17:57:13.298 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:57:13.338 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:57:13.338 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:57:13.338 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:57:13.338 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:13.338 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:57:13.338 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:13.338 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:13.338 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:57:13.338 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:57:13.358 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:57:13.488 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:57:13.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:57:13.488 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:13.488 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:13.488 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 17:57:13.488 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:57:13.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:57:13.488 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:13.488 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:13.488 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 17:57:13.678 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:57:13.678 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:57:13.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37195 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 17:57:13.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:57:13.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.169468574895607. ------
17-03-17 17:57:13.688 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17630 mm
17-03-17 17:57:13.688 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:57:13.688 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:13.688 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:13.688 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 17:57:13.688 -07 000000459 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 17:57:13.688 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 38513, sync = True, waitForSettling = False)
17-03-17 17:57:13.698 -07 000000409 INF: Z Motor: Moving to -0.176301 mm, started at -0.169469 mm, distance = -6.83 um
17-03-17 17:57:13.698 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:13.698 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:57:13.698 -07 000000433 INF: FPGA: Recv YRDPOS 136274
17-03-17 17:57:13.708 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:13.708 -07 000000459 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:13.708 -07 000000409 INF: FPGA: Xmit ZDACW 38513\n [Z Motor]
17-03-17 17:57:13.708 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:57:13.708 -07 000000459 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:57:13.708 -07 000000459 INF: Y Motor: Moving 1348 steps-27
17-03-17 17:57:13.718 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:57:13.718 -07 000000409 INF: FPGA: 'ZDACW 38513' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:57:13.728 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:57:13.738 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:13.738 -07 000000478 INF: FPGA: Recv ZDACR 38513
17-03-17 17:57:13.748 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:57:13.748 -07 000000409 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 17:57:13.878 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:57:13.878 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:57:13.878 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:13.878 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 17:57:13.878 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:57:13.878 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:13.878 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:57:13.878 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:57:13.878 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:57:13.888 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:57:13.918 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:57:13.918 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 17:57:14.098 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 17:57:14.098 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 17:57:14.138 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:14.138 -07 000000448 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:57:14.148 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:14.148 -07 000000459 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:14.148 -07 000000459 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 17:57:14.148 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.843 mm, average velocity = 2.145 mm/sec
17-03-17 17:57:14.768 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.974486,
17-03-17 17:57:15.098 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:15.098 -07 000000409 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:57:15.108 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:15.108 -07 000000459 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:15.128 -07 000000459 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:57:15.128 -07 000000459 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:57:15.128 -07 000000459 INF: Y Motor: Moved to 67.3726 after 1433 ms (table move)
17-03-17 17:57:15.128 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176301 mm (DAC = 38513)
17-03-17 17:57:15.128 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:15.128 -07 000000478 INF: FPGA: Recv ZSGSRD 36735
17-03-17 17:57:15.138 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:57:15.138 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:15.138 -07 000000448 INF: FPGA: Recv ZSGSRD 36734
17-03-17 17:57:15.148 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:15.148 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:15.148 -07 000000623 INF: FPGA: Recv ZSGSRD 36733
17-03-17 17:57:15.158 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:15.158 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:15.158 -07 000000433 INF: FPGA: Recv ZSGSRD 36732
17-03-17 17:57:15.168 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:15.168 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:15.168 -07 000000431 INF: FPGA: Recv ZSGSRD 36734
17-03-17 17:57:15.178 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:15.178 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:15.178 -07 000000476 INF: FPGA: Recv ZSGSRD 36740
17-03-17 17:57:15.188 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:15.188 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:15.188 -07 000000409 INF: FPGA: Recv ZSGSRD 36733
17-03-17 17:57:15.198 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:15.198 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:15.198 -07 000000623 INF: FPGA: Recv ZSGSRD 36730
17-03-17 17:57:15.208 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:15.208 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:15.208 -07 000000459 INF: FPGA: Recv ZSGSRD 36737
17-03-17 17:57:15.218 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:15.218 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:15.218 -07 000000482 INF: FPGA: Recv ZSGSRD 36731
17-03-17 17:57:15.228 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:15.238 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:15.238 -07 000000431 INF: FPGA: Recv ZPIEZORD 32965
17-03-17 17:57:15.248 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:57:15.248 -07 000000486 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.877 V. Piezo Error = -8.3 V.
17-03-17 17:57:15.248 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36734 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36734 (-175.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36730 (-175.4 uncal um), Max = 36740 (-175.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:57:15.248 -07 000000486 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36734, posNoise = 6, negNoise = 4
17-03-17 17:57:15.248 -07 000000486 INF: Z Motor: After move to -0.176301, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:15.248 -07 000000486 INF: Z Motor: Settle wait time = 1436 ms, measure time = 114 ms (allowed 150 ms), total time = 1550 ms
17-03-17 17:57:15.248 -07 000000486 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-17 17:57:15.288 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 17:57:15.288 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:57:15.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:15.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:15.288 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:15.288 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:15.298 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:57:15.298 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:15.298 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:57:15.298 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:57:15.298 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:15.298 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:57:15.308 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:57:15.308 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:57:15.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:57:15.358 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:57:15.548 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:57:15.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:57:15.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:57:15.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) start.
17-03-17 17:57:15.588 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:57:15.598 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 17:57:15.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 17:57:15.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:57:15.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:15.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:57:15.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:57:15.698 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:15.698 -07 000000478 INF: Autofocus start
17-03-17 17:57:15.698 -07 000000478 INF: MeasureProfile start
17-03-17 17:57:15.698 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:15.708 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:57:15.708 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:57:15.708 -07 000000478 INF: MeasureProfile done
17-03-17 17:57:15.708 -07 000000478 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:57:15.708 -07 000000478 INF: Autofocus finished
17-03-17 17:57:15.908 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:57:15.908 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 17:57:15.908 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.176310360826582. ----------
17-03-17 17:57:15.918 -07 000000610 INF: Cycle	7	Tile	10	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:57:15.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37010, sync = True, waitForSettling = True)
17-03-17 17:57:15.918 -07 000000610 INF: Z Motor: Moving to -0.169421 mm, started at -0.176310 mm, distance = 6.89 um
17-03-17 17:57:15.918 -07 000000610 INF: FPGA: Xmit ZDACW 37010\n [Z Motor]
17-03-17 17:57:15.918 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:57:15.928 -07 000000610 INF: FPGA: 'ZDACW 37010' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:57:15.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:15.928 -07 000000478 INF: FPGA: Recv ZDACR 37010
17-03-17 17:57:15.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:15.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:57:16.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:16.088 -07 000000576 INF: FPGA: Recv ZSGSRD 35660
17-03-17 17:57:16.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:16.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:16.098 -07 000000482 INF: FPGA: Recv ZSGSRD 35663
17-03-17 17:57:16.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:16.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:16.108 -07 000000433 INF: FPGA: Recv ZSGSRD 35662
17-03-17 17:57:16.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:16.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:16.118 -07 000000623 INF: FPGA: Recv ZSGSRD 35667
17-03-17 17:57:16.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:16.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:16.128 -07 000000501 INF: FPGA: Recv ZSGSRD 35661
17-03-17 17:57:16.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:16.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:16.138 -07 000000459 INF: FPGA: Recv ZSGSRD 35659
17-03-17 17:57:16.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:16.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:16.148 -07 000000576 INF: FPGA: Recv ZSGSRD 35666
17-03-17 17:57:16.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:16.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:16.158 -07 000000459 INF: FPGA: Recv ZSGSRD 35662
17-03-17 17:57:16.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:16.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:16.168 -07 000000482 INF: FPGA: Recv ZSGSRD 35662
17-03-17 17:57:16.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:16.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:16.178 -07 000000448 INF: FPGA: Recv ZSGSRD 35656
17-03-17 17:57:16.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:16.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:16.188 -07 000000501 INF: FPGA: Recv ZPIEZORD 31507
17-03-17 17:57:16.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:16.198 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.647 V. Piezo Error = -9.2 V.
17-03-17 17:57:16.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35662 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35662 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35656 (-168.5 uncal um), Max = 35667 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:57:16.198 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35662, posNoise = 5, negNoise = 6
17-03-17 17:57:16.198 -07 000000610 INF: Z Motor: After move to -0.169421, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:16.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:57:16.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:16.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:16.198 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:16.198 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:57:16.198 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:57:16.198 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:57:16.198 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:16.198 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:16.198 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:57:16.198 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:57:16.198 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:16.198 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:57:16.198 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:57:16.198 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:57:16.198 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:16.208 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:57:16.208 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:57:16.208 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:57:16.208 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:57:16.208 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:57:16.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37186 150\n [Camera]
17-03-17 17:57:16.418 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:57:16.548 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:57:16.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:57:16.808 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:57:16.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:57:16.808 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:16.808 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:16.808 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 17:57:16.808 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:57:16.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:57:16.808 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:16.808 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:16.808 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 17:57:16.998 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37186 776
17-03-17 17:57:17.148 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:57:17.188 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:57:17.188 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:57:17.188 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:17.188 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 17:57:17.188 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:57:17.188 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:17.198 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:57:17.198 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:57:17.198 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:57:17.208 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:57:17.338 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:57:17.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:57:17.338 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:17.338 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:17.338 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 17:57:17.338 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:57:17.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:57:17.348 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:17.348 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:17.348 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 17:57:17.528 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 17:57:17.528 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:57:17.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37186 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 17:57:17.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:57:17.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.169423605410614. ------
17-03-17 17:57:17.538 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:17.538 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17567 mm
17-03-17 17:57:17.538 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:57:17.538 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 17:57:17.538 -07 000000431 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 17:57:17.538 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:17.538 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38375, sync = True, waitForSettling = False)
17-03-17 17:57:17.538 -07 000000627 INF: Z Motor: Moving to -0.175669 mm, started at -0.169424 mm, distance = -6.25 um
17-03-17 17:57:17.548 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:57:17.548 -07 000000627 INF: FPGA: Xmit ZDACW 38375\n [Z Motor]
17-03-17 17:57:17.548 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:57:17.558 -07 000000627 INF: FPGA: 'ZDACW 38375' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:17.558 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:17.558 -07 000000486 INF: FPGA: Recv ZDACR 38375
17-03-17 17:57:17.568 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:17.568 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:17.568 -07 000000627 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 17:57:17.568 -07 000000448 INF: FPGA: Recv YRDPOS 137980
17-03-17 17:57:17.578 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:57:17.578 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 17:57:17.578 -07 000000431 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:17.578 -07 000000431 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:57:17.578 -07 000000431 INF: Y Motor: Moving 1343 steps-21
17-03-17 17:57:17.588 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:57:17.718 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 17:57:17.718 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:57:17.718 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:17.728 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:57:17.728 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 17:57:17.728 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:17.728 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:57:17.728 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 17:57:17.728 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:57:17.738 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:57:17.778 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:57:17.778 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 17:57:17.958 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 17:57:17.958 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 17:57:17.998 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:17.998 -07 000000409 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:57:18.008 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:57:18.008 -07 000000431 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:18.008 -07 000000431 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:57:18.008 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.840 mm, average velocity = 2.199 mm/sec
17-03-17 17:57:18.958 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:18.958 -07 000000576 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:57:18.968 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:18.968 -07 000000431 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:18.988 -07 000000431 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:57:18.988 -07 000000431 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:57:18.988 -07 000000431 INF: Y Motor: Moved to 68.2056 after 1442 ms (table move)
17-03-17 17:57:18.988 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175669 mm (DAC = 38375)
17-03-17 17:57:18.988 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:18.988 -07 000000627 INF: FPGA: Recv ZSGSRD 36638
17-03-17 17:57:18.998 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:57:18.998 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:18.998 -07 000000501 INF: FPGA: Recv ZSGSRD 36634
17-03-17 17:57:19.008 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.008 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:19.008 -07 000000476 INF: FPGA: Recv ZSGSRD 36635
17-03-17 17:57:19.018 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.018 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:19.018 -07 000000482 INF: FPGA: Recv ZSGSRD 36643
17-03-17 17:57:19.028 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.028 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:19.028 -07 000000501 INF: FPGA: Recv ZSGSRD 36643
17-03-17 17:57:19.038 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.038 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:19.038 -07 000000627 INF: FPGA: Recv ZSGSRD 36635
17-03-17 17:57:19.048 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.048 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:19.048 -07 000000482 INF: FPGA: Recv ZSGSRD 36636
17-03-17 17:57:19.058 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.058 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:19.058 -07 000000501 INF: FPGA: Recv ZSGSRD 36626
17-03-17 17:57:19.068 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.068 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:19.068 -07 000000627 INF: FPGA: Recv ZSGSRD 36633
17-03-17 17:57:19.078 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.078 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:19.078 -07 000000476 INF: FPGA: Recv ZSGSRD 36636
17-03-17 17:57:19.088 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.088 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:19.088 -07 000000627 INF: FPGA: Recv ZPIEZORD 32816
17-03-17 17:57:19.098 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.098 -07 000000459 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.5 V.
17-03-17 17:57:19.098 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36636 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36636 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36626 (-174.7 uncal um), Max = 36643 (-174.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:57:19.098 -07 000000459 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36636, posNoise = 7, negNoise = 10
17-03-17 17:57:19.098 -07 000000459 INF: Z Motor: After move to -0.175669, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:19.098 -07 000000459 INF: Z Motor: Settle wait time = 1445 ms, measure time = 106 ms (allowed 150 ms), total time = 1551 ms
17-03-17 17:57:19.098 -07 000000459 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:57:19.148 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 17:57:19.148 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:57:19.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:19.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:19.148 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:19.148 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:19.158 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:57:19.158 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:19.158 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:57:19.158 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:57:19.158 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:19.158 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:57:19.168 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:57:19.168 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:57:19.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:57:19.218 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:57:19.418 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:57:19.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:57:19.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:57:19.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-17 17:57:19.458 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:57:19.458 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 17:57:19.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 17:57:19.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:57:19.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:19.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:57:19.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:57:19.558 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:19.558 -07 000000482 INF: Autofocus start
17-03-17 17:57:19.558 -07 000000482 INF: MeasureProfile start
17-03-17 17:57:19.558 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:19.568 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:57:19.568 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:57:19.568 -07 000000482 INF: MeasureProfile done
17-03-17 17:57:19.568 -07 000000482 INF: X=-64  Z correction [um]=-0.4038377
17-03-17 17:57:19.568 -07 000000482 INF: Autofocus finished
17-03-17 17:57:19.768 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:57:19.768 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:57:19.768 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.175680788036689. ----------
17-03-17 17:57:19.778 -07 000000610 INF: Cycle	7	Tile	11	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:57:19.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36799, sync = True, waitForSettling = True)
17-03-17 17:57:19.778 -07 000000610 INF: Z Motor: Moving to -0.168455 mm, started at -0.175681 mm, distance = 7.23 um
17-03-17 17:57:19.778 -07 000000610 INF: FPGA: Xmit ZDACW 36799\n [Z Motor]
17-03-17 17:57:19.778 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 17:57:19.788 -07 000000610 INF: FPGA: 'ZDACW 36799' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:57:19.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:19.788 -07 000000459 INF: FPGA: Recv ZDACR 36799
17-03-17 17:57:19.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:57:19.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:19.948 -07 000000478 INF: FPGA: Recv ZSGSRD 35515
17-03-17 17:57:19.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:19.958 -07 000000476 INF: FPGA: Recv ZSGSRD 35516
17-03-17 17:57:19.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:19.968 -07 000000623 INF: FPGA: Recv ZSGSRD 35508
17-03-17 17:57:19.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:19.978 -07 000000448 INF: FPGA: Recv ZSGSRD 35514
17-03-17 17:57:19.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:19.988 -07 000000501 INF: FPGA: Recv ZSGSRD 35518
17-03-17 17:57:19.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:19.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:19.998 -07 000000448 INF: FPGA: Recv ZSGSRD 35510
17-03-17 17:57:20.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:20.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:20.008 -07 000000486 INF: FPGA: Recv ZSGSRD 35507
17-03-17 17:57:20.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:20.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:20.018 -07 000000482 INF: FPGA: Recv ZSGSRD 35512
17-03-17 17:57:20.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:20.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:20.028 -07 000000623 INF: FPGA: Recv ZSGSRD 35517
17-03-17 17:57:20.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:20.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:20.038 -07 000000459 INF: FPGA: Recv ZSGSRD 35511
17-03-17 17:57:20.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:20.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:20.048 -07 000000501 INF: FPGA: Recv ZPIEZORD 31331
17-03-17 17:57:20.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:20.058 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.615 V. Piezo Error = -9.2 V.
17-03-17 17:57:20.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35513 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35513 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35507 (-167.6 uncal um), Max = 35518 (-167.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:57:20.058 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35513, posNoise = 5, negNoise = 6
17-03-17 17:57:20.058 -07 000000610 INF: Z Motor: After move to -0.168455, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:20.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:57:20.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:20.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:20.058 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:20.058 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:57:20.058 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:20.058 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:57:20.058 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:57:20.058 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:20.058 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:20.058 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:57:20.058 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:57:20.058 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:57:20.058 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:20.058 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:57:20.068 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:57:20.068 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:57:20.068 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:57:20.078 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:57:20.078 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:57:20.078 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:57:20.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36976 150\n [Camera]
17-03-17 17:57:20.128 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.970374,
17-03-17 17:57:20.278 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:57:20.668 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:57:20.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:57:20.668 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:20.668 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:20.668 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 17:57:20.668 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:57:20.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:57:20.668 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:20.668 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:20.668 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 17:57:20.858 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36976 776
17-03-17 17:57:21.008 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:57:21.048 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:57:21.048 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:57:21.048 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:21.048 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:57:21.048 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:57:21.048 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:21.058 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:21.058 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:57:21.058 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:21.068 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:57:21.198 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:57:21.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:57:21.198 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:21.198 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:21.198 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 17:57:21.198 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:57:21.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:57:21.208 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:21.208 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:21.208 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 17:57:21.388 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 17:57:21.388 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:57:21.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36976 150' command took 2 ms to send, 1308 ms to get response, and 1313 ms overall
17-03-17 17:57:21.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:57:21.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.168466397801492. ------
17-03-17 17:57:21.398 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:21.398 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17501 mm
17-03-17 17:57:21.398 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:57:21.398 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:21.398 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 17:57:21.398 -07 000000433 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 17:57:21.398 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38232, sync = True, waitForSettling = False)
17-03-17 17:57:21.408 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:57:21.408 -07 000000476 INF: Z Motor: Moving to -0.175015 mm, started at -0.168466 mm, distance = -6.55 um
17-03-17 17:57:21.408 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:21.408 -07 000000501 INF: FPGA: Recv YRDPOS 139686
17-03-17 17:57:21.418 -07 000000433 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:21.418 -07 000000433 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:21.418 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:57:21.418 -07 000000433 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:57:21.418 -07 000000433 INF: Y Motor: Moving 1338 steps-14
17-03-17 17:57:21.428 -07 000000476 INF: FPGA: Xmit ZDACW 38232\n [Z Motor]
17-03-17 17:57:21.428 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:57:21.438 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:57:21.438 -07 000000476 INF: FPGA: 'ZDACW 38232' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:57:21.448 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:21.448 -07 000000409 INF: FPGA: Recv ZDACR 38232
17-03-17 17:57:21.458 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:57:21.458 -07 000000476 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 17:57:21.548 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:57:21.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:57:21.588 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:57:21.588 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:57:21.588 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:21.588 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 17:57:21.588 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:57:21.588 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:21.588 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:57:21.598 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:57:21.598 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:57:21.598 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:57:21.618 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:57:21.618 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 17:57:21.808 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 17:57:21.808 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 17:57:21.848 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:21.848 -07 000000576 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:57:21.858 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:57:21.858 -07 000000433 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:21.858 -07 000000433 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 17:57:21.858 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.837 mm, average velocity = 2.141 mm/sec
17-03-17 17:57:22.808 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:22.808 -07 000000482 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:57:22.818 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:22.818 -07 000000433 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:22.838 -07 000000433 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:57:22.838 -07 000000433 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:57:22.838 -07 000000433 INF: Y Motor: Moved to 69.0278 after 1432 ms (table move)
17-03-17 17:57:22.838 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175015 mm (DAC = 38232)
17-03-17 17:57:22.838 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:22.848 -07 000000431 INF: FPGA: Recv ZSGSRD 36534
17-03-17 17:57:22.848 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:57:22.848 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:22.848 -07 000000478 INF: FPGA: Recv ZSGSRD 36529
17-03-17 17:57:22.858 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:57:22.858 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:22.858 -07 000000431 INF: FPGA: Recv ZSGSRD 36543
17-03-17 17:57:22.868 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:22.868 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:22.868 -07 000000478 INF: FPGA: Recv ZSGSRD 36536
17-03-17 17:57:22.878 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:22.878 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:22.878 -07 000000431 INF: FPGA: Recv ZSGSRD 36534
17-03-17 17:57:22.888 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:22.888 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:22.888 -07 000000478 INF: FPGA: Recv ZSGSRD 36541
17-03-17 17:57:22.898 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:22.898 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:22.898 -07 000000431 INF: FPGA: Recv ZSGSRD 36538
17-03-17 17:57:22.908 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:22.908 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:22.908 -07 000000478 INF: FPGA: Recv ZSGSRD 36534
17-03-17 17:57:22.918 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:22.918 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:22.918 -07 000000409 INF: FPGA: Recv ZSGSRD 36532
17-03-17 17:57:22.928 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:22.928 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:22.928 -07 000000478 INF: FPGA: Recv ZSGSRD 36536
17-03-17 17:57:22.938 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:22.938 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:22.938 -07 000000486 INF: FPGA: Recv ZPIEZORD 32692
17-03-17 17:57:22.948 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:22.948 -07 000000627 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.834 V. Piezo Error = -8.5 V.
17-03-17 17:57:22.948 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36536 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36535 (-174.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36529 (-174.1 uncal um), Max = 36543 (-174.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:57:22.948 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36536, posNoise = 7, negNoise = 7
17-03-17 17:57:22.948 -07 000000627 INF: Z Motor: After move to -0.175015, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:22.948 -07 000000627 INF: Z Motor: Settle wait time = 1435 ms, measure time = 108 ms (allowed 150 ms), total time = 1543 ms
17-03-17 17:57:22.948 -07 000000627 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:57:22.998 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 17:57:22.998 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:57:22.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:22.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:23.008 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:23.008 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:23.008 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:57:23.008 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:23.008 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:57:23.008 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:57:23.008 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:23.008 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:57:23.018 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:57:23.018 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:57:23.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:57:23.068 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:57:23.268 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:57:23.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:57:23.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:57:23.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 17:57:23.308 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:57:23.308 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 17:57:23.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 17:57:23.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 17:57:23.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:23.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:57:23.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 17:57:23.808 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:23.808 -07 000000459 INF: Autofocus start
17-03-17 17:57:23.808 -07 000000459 INF: MeasureProfile start
17-03-17 17:57:23.808 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:23.818 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:57:23.818 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:57:23.818 -07 000000459 INF: MeasureProfile done
17-03-17 17:57:23.818 -07 000000459 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:57:23.818 -07 000000459 INF: Autofocus finished
17-03-17 17:57:24.018 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:57:24.018 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:57:24.018 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.175038366822513. ----------
17-03-17 17:57:24.018 -07 000000610 INF: Cycle	7	Tile	12	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:57:24.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36747, sync = True, waitForSettling = True)
17-03-17 17:57:24.028 -07 000000610 INF: Z Motor: Moving to -0.168217 mm, started at -0.175038 mm, distance = 6.82 um
17-03-17 17:57:24.028 -07 000000610 INF: FPGA: Xmit ZDACW 36747\n [Z Motor]
17-03-17 17:57:24.028 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 17:57:24.038 -07 000000610 INF: FPGA: 'ZDACW 36747' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:24.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:24.038 -07 000000576 INF: FPGA: Recv ZDACR 36747
17-03-17 17:57:24.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:24.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:57:24.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:24.198 -07 000000482 INF: FPGA: Recv ZSGSRD 35472
17-03-17 17:57:24.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:24.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:24.208 -07 000000627 INF: FPGA: Recv ZSGSRD 35477
17-03-17 17:57:24.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:24.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:24.218 -07 000000482 INF: FPGA: Recv ZSGSRD 35478
17-03-17 17:57:24.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:24.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:24.228 -07 000000576 INF: FPGA: Recv ZSGSRD 35474
17-03-17 17:57:24.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:24.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:24.238 -07 000000482 INF: FPGA: Recv ZSGSRD 35483
17-03-17 17:57:24.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:24.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:24.248 -07 000000627 INF: FPGA: Recv ZSGSRD 35477
17-03-17 17:57:24.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:24.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:24.258 -07 000000459 INF: FPGA: Recv ZSGSRD 35473
17-03-17 17:57:24.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:24.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:24.268 -07 000000482 INF: FPGA: Recv ZSGSRD 35476
17-03-17 17:57:24.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:24.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:24.278 -07 000000627 INF: FPGA: Recv ZSGSRD 35474
17-03-17 17:57:24.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:24.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:24.288 -07 000000501 INF: FPGA: Recv ZSGSRD 35479
17-03-17 17:57:24.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:24.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:24.298 -07 000000482 INF: FPGA: Recv ZPIEZORD 31254
17-03-17 17:57:24.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:24.308 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.607 V. Piezo Error = -9.3 V.
17-03-17 17:57:24.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35476 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35476 (-167.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35472 (-167.3 uncal um), Max = 35483 (-167.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:57:24.308 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35476, posNoise = 7, negNoise = 4
17-03-17 17:57:24.308 -07 000000610 INF: Z Motor: After move to -0.168217, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:24.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:57:24.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:24.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:24.308 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:24.308 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:24.308 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:57:24.308 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:24.308 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:57:24.308 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:57:24.308 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:24.308 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:57:24.308 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:57:24.308 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:57:24.318 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:57:24.318 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:57:24.318 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:57:24.318 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:57:24.328 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:57:24.328 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:57:24.328 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 17:57:24.328 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:57:24.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36923 150\n [Camera]
17-03-17 17:57:24.528 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:57:24.928 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:57:24.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:57:24.928 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:24.928 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:24.928 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 17:57:24.928 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:57:24.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:57:24.928 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:24.928 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:24.928 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 17:57:25.118 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36923 776
17-03-17 17:57:25.268 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:57:25.308 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:57:25.308 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:57:25.308 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:25.308 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 17:57:25.308 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:57:25.308 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:25.308 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:25.318 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:25.318 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:57:25.318 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:57:25.458 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:57:25.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:57:25.458 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:25.598 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:57:25.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:57:25.608 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:25.608 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.959467,
17-03-17 17:57:25.608 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:25.608 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:57:25.618 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:25.618 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 17:57:25.648 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 17:57:25.648 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:57:25.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36923 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-17 17:57:25.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:57:25.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.168228701952247. ------
17-03-17 17:57:25.658 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:25.658 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17465 mm
17-03-17 17:57:25.658 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:57:25.658 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:25.658 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 17:57:25.658 -07 000000501 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 17:57:25.658 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38152, sync = True, waitForSettling = False)
17-03-17 17:57:25.658 -07 000000459 INF: Z Motor: Moving to -0.174649 mm, started at -0.168229 mm, distance = -6.42 um
17-03-17 17:57:25.668 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:25.668 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:25.668 -07 000000482 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:57:25.678 -07 000000459 INF: FPGA: Xmit ZDACW 38152\n [Z Motor]
17-03-17 17:57:25.678 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:57:25.678 -07 000000501 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:25.678 -07 000000501 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:57:25.678 -07 000000501 INF: Y Motor: Moving 1352 steps-30
17-03-17 17:57:25.678 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:57:25.688 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:57:25.688 -07 000000459 INF: FPGA: 'ZDACW 38152' command took 3 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:57:25.698 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:57:25.708 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:25.708 -07 000000478 INF: FPGA: Recv ZDACR 38152
17-03-17 17:57:25.718 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:57:25.718 -07 000000459 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 17:57:25.888 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:57:25.888 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:57:26.008 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 17:57:26.008 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:57:26.008 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 17:57:26.008 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:26.008 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:57:26.008 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:26.008 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:26.008 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 556 ms.
17-03-17 17:57:26.008 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:26.018 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 17:57:26.068 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 17:57:26.068 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 17:57:26.098 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:26.108 -07 000000478 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:57:26.118 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:26.118 -07 000000501 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:26.118 -07 000000501 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 17:57:26.118 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.144 mm/sec
17-03-17 17:57:26.548 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:57:26.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:57:27.068 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:27.068 -07 000000459 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:57:27.078 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:27.078 -07 000000501 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:27.098 -07 000000501 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:57:27.098 -07 000000501 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:57:27.098 -07 000000501 INF: Y Motor: Moved to 69.8638 after 1436 ms (table move)
17-03-17 17:57:27.098 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174649 mm (DAC = 38152)
17-03-17 17:57:27.098 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:27.098 -07 000000623 INF: FPGA: Recv ZSGSRD 36482
17-03-17 17:57:27.108 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:57:27.108 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:27.108 -07 000000448 INF: FPGA: Recv ZSGSRD 36468
17-03-17 17:57:27.118 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:27.118 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:27.118 -07 000000459 INF: FPGA: Recv ZSGSRD 36486
17-03-17 17:57:27.128 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:27.128 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:27.128 -07 000000448 INF: FPGA: Recv ZSGSRD 36475
17-03-17 17:57:27.138 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:27.138 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:27.138 -07 000000459 INF: FPGA: Recv ZSGSRD 36485
17-03-17 17:57:27.148 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:27.148 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:27.148 -07 000000501 INF: FPGA: Recv ZSGSRD 36485
17-03-17 17:57:27.158 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:27.158 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:27.158 -07 000000431 INF: FPGA: Recv ZSGSRD 36472
17-03-17 17:57:27.168 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:27.168 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:27.168 -07 000000623 INF: FPGA: Recv ZSGSRD 36478
17-03-17 17:57:27.178 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:27.178 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:27.178 -07 000000433 INF: FPGA: Recv ZSGSRD 36472
17-03-17 17:57:27.188 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:27.188 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:27.188 -07 000000476 INF: FPGA: Recv ZSGSRD 36473
17-03-17 17:57:27.198 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:27.198 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:27.198 -07 000000478 INF: FPGA: Recv ZPIEZORD 32604
17-03-17 17:57:27.208 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:27.208 -07 000000627 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.822 V. Piezo Error = -8.6 V.
17-03-17 17:57:27.208 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36478 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36476 (-173.8 uncal um), StdDev = 7 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36468 (-173.7 uncal um), Max = 36486 (-173.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:57:27.208 -07 000000627 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36478, posNoise = 8, negNoise = 10
17-03-17 17:57:27.208 -07 000000627 INF: Z Motor: After move to -0.174649, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:27.208 -07 000000627 INF: Z Motor: Settle wait time = 1439 ms, measure time = 106 ms (allowed 150 ms), total time = 1545 ms
17-03-17 17:57:27.208 -07 000000627 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:57:27.258 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 17:57:27.258 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:57:27.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:27.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:27.258 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:27.258 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:27.258 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:57:27.258 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:27.268 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:57:27.268 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:57:27.268 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:27.268 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:57:27.268 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:57:27.278 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:57:27.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:57:27.318 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:57:27.518 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:57:27.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:57:27.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:57:27.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 17:57:27.558 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:57:27.558 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 17:57:27.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:57:27.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:57:27.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:27.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:57:27.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 174 ms.
17-03-17 17:57:27.958 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:27.958 -07 000000459 INF: Autofocus start
17-03-17 17:57:27.958 -07 000000459 INF: MeasureProfile start
17-03-17 17:57:27.958 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:27.968 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:57:27.968 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:57:27.968 -07 000000459 INF: MeasureProfile done
17-03-17 17:57:27.968 -07 000000459 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:57:27.968 -07 000000459 INF: Autofocus finished
17-03-17 17:57:28.168 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:57:28.168 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:57:28.168 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.174665762518291. ----------
17-03-17 17:57:28.278 -07 000000610 INF: Cycle	7	Tile	13	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:57:28.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36667, sync = True, waitForSettling = True)
17-03-17 17:57:28.278 -07 000000610 INF: Z Motor: Moving to -0.167851 mm, started at -0.174666 mm, distance = 6.81 um
17-03-17 17:57:28.278 -07 000000610 INF: FPGA: Xmit ZDACW 36667\n [Z Motor]
17-03-17 17:57:28.288 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 17:57:28.288 -07 000000610 INF: FPGA: 'ZDACW 36667' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:57:28.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:28.288 -07 000000627 INF: FPGA: Recv ZDACR 36667
17-03-17 17:57:28.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:57:28.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:57:28.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:28.448 -07 000000458 INF: FPGA: Recv ZSGSRD 35419
17-03-17 17:57:28.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:28.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:28.458 -07 000000501 INF: FPGA: Recv ZSGSRD 35421
17-03-17 17:57:28.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:28.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:28.468 -07 000000623 INF: FPGA: Recv ZSGSRD 35418
17-03-17 17:57:28.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:28.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:28.478 -07 000000627 INF: FPGA: Recv ZSGSRD 35422
17-03-17 17:57:28.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:28.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:28.488 -07 000000478 INF: FPGA: Recv ZSGSRD 35418
17-03-17 17:57:28.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:28.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:28.498 -07 000000501 INF: FPGA: Recv ZSGSRD 35422
17-03-17 17:57:28.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:28.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:28.508 -07 000000623 INF: FPGA: Recv ZSGSRD 35422
17-03-17 17:57:28.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:28.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:28.518 -07 000000409 INF: FPGA: Recv ZSGSRD 35420
17-03-17 17:57:28.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:28.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:28.528 -07 000000478 INF: FPGA: Recv ZSGSRD 35421
17-03-17 17:57:28.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:28.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:28.538 -07 000000448 INF: FPGA: Recv ZSGSRD 35419
17-03-17 17:57:28.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:28.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:28.548 -07 000000482 INF: FPGA: Recv ZPIEZORD 31173
17-03-17 17:57:28.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:28.558 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.595 V. Piezo Error = -9.4 V.
17-03-17 17:57:28.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35420 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35420 (-167.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35418 (-167.0 uncal um), Max = 35422 (-167.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 17:57:28.558 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35420, posNoise = 2, negNoise = 2
17-03-17 17:57:28.558 -07 000000610 INF: Z Motor: After move to -0.167851, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:28.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 17:57:28.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:28.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:28.558 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:57:28.558 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:28.558 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:28.558 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:28.558 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:57:28.558 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:57:28.558 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:28.558 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:57:28.558 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:57:28.558 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:57:28.568 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:28.568 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:57:28.568 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:57:28.568 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:57:28.578 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 17:57:28.578 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:57:28.578 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 17:57:28.578 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 17:57:28.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36843 150\n [Camera]
17-03-17 17:57:28.778 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:57:29.178 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:57:29.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:57:29.178 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:29.178 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:57:29.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:57:29.178 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:29.178 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:29.178 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 17:57:29.178 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:29.178 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:57:29.368 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36843 776
17-03-17 17:57:29.518 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:57:29.568 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 17:57:29.568 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:57:29.568 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:29.578 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 17:57:29.578 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:57:29.578 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:29.578 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:57:29.578 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:57:29.578 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:29.588 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 17:57:29.708 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:57:29.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:57:29.708 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:29.708 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:57:29.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:57:29.708 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:29.708 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:29.708 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 17:57:29.708 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:29.708 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2214461200, 0x0, 391868352) start.
17-03-17 17:57:29.898 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:57:29.898 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:57:29.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36843 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-17 17:57:29.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:57:29.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.167868946072308. ------
17-03-17 17:57:29.898 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:29.898 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17436 mm
17-03-17 17:57:29.898 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:57:29.908 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:29.908 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 17:57:29.908 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38089, sync = True, waitForSettling = False)
17-03-17 17:57:29.908 -07 000000623 INF: Z Motor: Moving to -0.174360 mm, started at -0.167869 mm, distance = -6.49 um
17-03-17 17:57:29.908 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:57:29.908 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 17:57:29.908 -07 000000431 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 17:57:29.918 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:29.918 -07 000000448 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:57:29.928 -07 000000623 INF: FPGA: Xmit ZDACW 38089\n [Z Motor]
17-03-17 17:57:29.928 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:57:29.928 -07 000000431 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:29.928 -07 000000431 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:57:29.928 -07 000000431 INF: Y Motor: Moving 1342 steps-18
17-03-17 17:57:29.928 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:57:29.938 -07 000000623 INF: FPGA: 'ZDACW 38089' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:57:29.938 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:29.938 -07 000000458 INF: FPGA: Recv ZDACR 38089
17-03-17 17:57:29.948 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:29.948 -07 000000623 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 17:57:29.948 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:57:30.098 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 17:57:30.098 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:57:30.098 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:30.098 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2214461200, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 17:57:30.098 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:57:30.098 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:30.098 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:30.098 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:30.098 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:57:30.108 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 17:57:30.118 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:57:30.118 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 206 ms overall
17-03-17 17:57:30.318 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 17:57:30.318 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:57:30.358 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:30.358 -07 000000482 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:57:30.368 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:30.368 -07 000000431 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:30.368 -07 000000431 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:57:30.368 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 17:57:30.968 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.96762,
17-03-17 17:57:31.338 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:31.338 -07 000000480 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:57:31.348 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 17:57:31.348 -07 000000431 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:31.378 -07 000000431 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:57:31.378 -07 000000431 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:57:31.378 -07 000000431 INF: Y Motor: Moved to 70.6890 after 1469 ms (table move)
17-03-17 17:57:31.378 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174360 mm (DAC = 38089)
17-03-17 17:57:31.378 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:31.388 -07 000000476 INF: FPGA: Recv ZSGSRD 36441
17-03-17 17:57:31.398 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:31.398 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:31.398 -07 000000576 INF: FPGA: Recv ZSGSRD 36436
17-03-17 17:57:31.408 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:31.408 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:31.408 -07 000000459 INF: FPGA: Recv ZSGSRD 36430
17-03-17 17:57:31.418 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:31.418 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:31.418 -07 000000623 INF: FPGA: Recv ZSGSRD 36432
17-03-17 17:57:31.428 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:31.428 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:31.428 -07 000000593 INF: FPGA: Recv ZSGSRD 36431
17-03-17 17:57:31.438 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:31.438 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:31.438 -07 000000501 INF: FPGA: Recv ZSGSRD 36430
17-03-17 17:57:31.448 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:31.448 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:31.448 -07 000000482 INF: FPGA: Recv ZSGSRD 36437
17-03-17 17:57:31.458 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:31.458 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:31.458 -07 000000623 INF: FPGA: Recv ZSGSRD 36431
17-03-17 17:57:31.468 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:31.468 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:31.468 -07 000000431 INF: FPGA: Recv ZSGSRD 36438
17-03-17 17:57:31.478 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:31.478 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:31.478 -07 000000501 INF: FPGA: Recv ZSGSRD 36432
17-03-17 17:57:31.488 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:31.488 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:31.488 -07 000000627 INF: FPGA: Recv ZPIEZORD 32568
17-03-17 17:57:31.498 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:31.498 -07 000000433 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.812 V. Piezo Error = -8.5 V.
17-03-17 17:57:31.498 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36434 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36432 (-173.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36430 (-173.5 uncal um), Max = 36441 (-173.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:57:31.498 -07 000000433 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36434, posNoise = 7, negNoise = 4
17-03-17 17:57:31.498 -07 000000433 INF: Z Motor: After move to -0.174360, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:31.498 -07 000000433 INF: Z Motor: Settle wait time = 1476 ms, measure time = 111 ms (allowed 150 ms), total time = 1587 ms
17-03-17 17:57:31.498 -07 000000433 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 17:57:31.538 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-17 17:57:31.538 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:57:31.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:31.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:31.538 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:31.538 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:31.538 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:57:31.538 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:31.538 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:31.548 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:57:31.548 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:31.548 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:57:31.548 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:57:31.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:57:31.558 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:57:31.558 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:57:31.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:57:31.598 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:57:31.798 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:57:31.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:57:31.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:57:31.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 17:57:31.838 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:57:31.838 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 17:57:31.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 17:57:31.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:57:31.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:31.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:57:31.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:57:31.938 -07 000000459 INF: Autofocus start
17-03-17 17:57:31.938 -07 000000459 INF: MeasureProfile start
17-03-17 17:57:31.938 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:31.938 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:31.948 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:57:31.948 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:57:31.948 -07 000000459 INF: MeasureProfile done
17-03-17 17:57:31.948 -07 000000459 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 17:57:31.948 -07 000000459 INF: Autofocus finished
17-03-17 17:57:32.148 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:57:32.148 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:57:32.148 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.174383097184054. ----------
17-03-17 17:57:32.148 -07 000000610 INF: Cycle	7	Tile	14	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:57:32.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36569, sync = True, waitForSettling = True)
17-03-17 17:57:32.158 -07 000000610 INF: Z Motor: Moving to -0.167402 mm, started at -0.174383 mm, distance = 6.98 um
17-03-17 17:57:32.158 -07 000000610 INF: FPGA: Xmit ZDACW 36569\n [Z Motor]
17-03-17 17:57:32.158 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:57:32.168 -07 000000610 INF: FPGA: 'ZDACW 36569' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:57:32.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:32.168 -07 000000459 INF: FPGA: Recv ZDACR 36569
17-03-17 17:57:32.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:32.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:57:32.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:32.328 -07 000000480 INF: FPGA: Recv ZSGSRD 35343
17-03-17 17:57:32.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:32.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:32.338 -07 000000448 INF: FPGA: Recv ZSGSRD 35355
17-03-17 17:57:32.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:32.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:32.348 -07 000000486 INF: FPGA: Recv ZSGSRD 35347
17-03-17 17:57:32.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:32.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:32.358 -07 000000431 INF: FPGA: Recv ZSGSRD 35338
17-03-17 17:57:32.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:32.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:32.368 -07 000000476 INF: FPGA: Recv ZSGSRD 35354
17-03-17 17:57:32.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:32.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:32.378 -07 000000448 INF: FPGA: Recv ZSGSRD 35343
17-03-17 17:57:32.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:32.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:32.388 -07 000000627 INF: FPGA: Recv ZSGSRD 35358
17-03-17 17:57:32.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:32.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:32.398 -07 000000623 INF: FPGA: Recv ZSGSRD 35349
17-03-17 17:57:32.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:32.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:32.408 -07 000000480 INF: FPGA: Recv ZSGSRD 35344
17-03-17 17:57:32.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:32.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:32.418 -07 000000448 INF: FPGA: Recv ZSGSRD 35348
17-03-17 17:57:32.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:32.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:32.428 -07 000000486 INF: FPGA: Recv ZPIEZORD 31080
17-03-17 17:57:32.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:32.438 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.580 V. Piezo Error = -9.4 V.
17-03-17 17:57:32.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35348 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35348 (-166.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 35338 (-166.5 uncal um), Max = 35358 (-166.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:57:32.438 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35348, posNoise = 10, negNoise = 10
17-03-17 17:57:32.438 -07 000000610 INF: Z Motor: After move to -0.167402, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:32.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:57:32.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:32.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:32.438 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:32.438 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:57:32.438 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:32.438 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:32.438 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:57:32.438 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:57:32.438 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:32.438 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:57:32.438 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:57:32.438 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:57:32.448 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:32.448 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:57:32.448 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:57:32.448 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:57:32.448 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:57:32.458 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:57:32.458 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:57:32.458 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:57:32.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36746 150\n [Camera]
17-03-17 17:57:32.658 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:57:33.048 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 17:57:33.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 17:57:33.048 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:33.048 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:33.048 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1049759792, 0x0, 391868352) start.
17-03-17 17:57:33.048 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 17:57:33.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 17:57:33.048 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:33.048 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:33.058 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1085182056, 0x0, 418435064) start.
17-03-17 17:57:33.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36746 776
17-03-17 17:57:33.388 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:57:33.428 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1085182056, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:57:33.428 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:57:33.428 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:33.428 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:57:33.428 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1049759792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:57:33.428 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:57:33.428 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:33.428 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:57:33.438 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:57:33.438 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 17:57:33.578 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:57:33.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:57:33.578 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:33.578 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:33.578 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1120604320, 0x0, 391868352) start.
17-03-17 17:57:33.578 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:57:33.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:57:33.578 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:33.578 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:33.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:57:33.768 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:57:33.768 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:57:33.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36746 150' command took 2 ms to send, 1306 ms to get response, and 1314 ms overall
17-03-17 17:57:33.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:57:33.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.167406402798101. ------
17-03-17 17:57:33.778 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:33.778 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17408 mm
17-03-17 17:57:33.778 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:57:33.888 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:33.888 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 112 ms overall
17-03-17 17:57:33.888 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:57:33.888 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 17:57:33.888 -07 000000576 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 17:57:33.888 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38028, sync = True, waitForSettling = False)
17-03-17 17:57:33.888 -07 000000448 INF: Z Motor: Moving to -0.174081 mm, started at -0.167406 mm, distance = -6.67 um
17-03-17 17:57:33.898 -07 000000448 INF: FPGA: Xmit ZDACW 38028\n [Z Motor]
17-03-17 17:57:33.898 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:57:33.908 -07 000000448 INF: FPGA: 'ZDACW 38028' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:57:33.908 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:33.908 -07 000000459 INF: FPGA: Recv YRDPOS 144772
17-03-17 17:57:33.918 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:57:33.918 -07 000000576 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:33.918 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:33.918 -07 000000627 INF: FPGA: Recv ZDACR 38028
17-03-17 17:57:33.918 -07 000000576 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:57:33.918 -07 000000576 INF: Y Motor: Moving 1349 steps-28
17-03-17 17:57:33.928 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:57:33.928 -07 000000448 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 17:57:33.928 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:57:33.968 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1120604320, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 17:57:33.968 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:57:33.968 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:33.968 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 17:57:33.968 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:57:33.968 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:33.978 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:33.978 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:57:33.978 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 17:57:33.988 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 17:57:34.088 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:57:34.088 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 17:57:34.298 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 17:57:34.298 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 17:57:34.338 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:34.338 -07 000000476 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:57:34.348 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:34.348 -07 000000576 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:34.348 -07 000000576 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:57:34.348 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.203 mm/sec
17-03-17 17:57:35.298 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:35.298 -07 000000623 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:57:35.308 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:35.308 -07 000000576 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:35.328 -07 000000576 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:57:35.328 -07 000000576 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:57:35.328 -07 000000576 INF: Y Motor: Moved to 71.5195 after 1435 ms (table move)
17-03-17 17:57:35.328 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174081 mm (DAC = 38028)
17-03-17 17:57:35.328 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:35.328 -07 000000448 INF: FPGA: Recv ZSGSRD 36384
17-03-17 17:57:35.338 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:57:35.338 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:35.338 -07 000000551 INF: FPGA: Recv ZSGSRD 36383
17-03-17 17:57:35.348 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:35.348 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:35.348 -07 000000623 INF: FPGA: Recv ZSGSRD 36383
17-03-17 17:57:35.358 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:35.358 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:35.358 -07 000000478 INF: FPGA: Recv ZSGSRD 36385
17-03-17 17:57:35.368 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:35.368 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:35.368 -07 000000448 INF: FPGA: Recv ZSGSRD 36391
17-03-17 17:57:35.378 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:35.378 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:35.378 -07 000000501 INF: FPGA: Recv ZSGSRD 36397
17-03-17 17:57:35.388 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:35.388 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:35.388 -07 000000433 INF: FPGA: Recv ZSGSRD 36394
17-03-17 17:57:35.398 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:35.398 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:35.398 -07 000000551 INF: FPGA: Recv ZSGSRD 36391
17-03-17 17:57:35.408 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:35.408 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:35.408 -07 000000501 INF: FPGA: Recv ZSGSRD 36383
17-03-17 17:57:35.418 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:35.418 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:35.418 -07 000000458 INF: FPGA: Recv ZSGSRD 36379
17-03-17 17:57:35.428 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:35.428 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:35.428 -07 000000480 INF: FPGA: Recv ZPIEZORD 32481
17-03-17 17:57:35.438 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:35.438 -07 000000593 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.803 V. Piezo Error = -8.6 V.
17-03-17 17:57:35.438 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36387 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36384 (-173.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36379 (-173.1 uncal um), Max = 36397 (-173.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:57:35.438 -07 000000593 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36387, posNoise = 10, negNoise = 8
17-03-17 17:57:35.438 -07 000000593 INF: Z Motor: After move to -0.174081, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:35.438 -07 000000593 INF: Z Motor: Settle wait time = 1438 ms, measure time = 105 ms (allowed 150 ms), total time = 1543 ms
17-03-17 17:57:35.438 -07 000000593 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 17:57:35.488 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1709 ms
17-03-17 17:57:35.488 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:57:35.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:35.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:35.488 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:35.488 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:35.498 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:57:35.498 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:35.498 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:57:35.498 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:57:35.498 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:35.498 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:57:35.508 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:57:35.508 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:57:35.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:57:35.548 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:57:35.748 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:57:35.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:57:35.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:57:35.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:57:35.788 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:57:35.788 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:57:35.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:57:35.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:57:35.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:35.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:57:35.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:57:35.888 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:35.888 -07 000000409 INF: Autofocus start
17-03-17 17:57:35.888 -07 000000409 INF: MeasureProfile start
17-03-17 17:57:35.888 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:35.898 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:57:35.898 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:57:35.898 -07 000000409 INF: MeasureProfile done
17-03-17 17:57:35.898 -07 000000409 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:57:35.898 -07 000000409 INF: Autofocus finished
17-03-17 17:57:36.098 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:57:36.098 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:57:36.098 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.174081159213391. ----------
17-03-17 17:57:36.098 -07 000000610 INF: Cycle	7	Tile	15	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:57:36.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36543, sync = True, waitForSettling = True)
17-03-17 17:57:36.108 -07 000000610 INF: Z Motor: Moving to -0.167283 mm, started at -0.174081 mm, distance = 6.80 um
17-03-17 17:57:36.108 -07 000000610 INF: FPGA: Xmit ZDACW 36543\n [Z Motor]
17-03-17 17:57:36.108 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 17:57:36.118 -07 000000610 INF: FPGA: 'ZDACW 36543' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:36.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:36.118 -07 000000593 INF: FPGA: Recv ZDACR 36543
17-03-17 17:57:36.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:36.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:57:36.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:36.278 -07 000000623 INF: FPGA: Recv ZSGSRD 35337
17-03-17 17:57:36.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:36.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:36.288 -07 000000480 INF: FPGA: Recv ZSGSRD 35326
17-03-17 17:57:36.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:36.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:36.298 -07 000000476 INF: FPGA: Recv ZSGSRD 35331
17-03-17 17:57:36.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:57:36.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:36.308 -07 000000627 INF: FPGA: Recv ZSGSRD 35329
17-03-17 17:57:36.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:36.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:36.328 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 4.009895,
17-03-17 17:57:36.328 -07 000000431 INF: FPGA: Recv ZSGSRD 35335
17-03-17 17:57:36.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:57:36.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:36.358 -07 000000593 INF: FPGA: Recv ZSGSRD 35330
17-03-17 17:57:36.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:57:36.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:36.388 -07 000000576 INF: FPGA: Recv ZSGSRD 35333
17-03-17 17:57:36.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:57:36.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:36.408 -07 000000431 INF: FPGA: Recv ZSGSRD 35325
17-03-17 17:57:36.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:57:36.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:36.418 -07 000000482 INF: FPGA: Recv ZSGSRD 35334
17-03-17 17:57:36.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:36.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:36.428 -07 000000561 INF: FPGA: Recv ZSGSRD 35332
17-03-17 17:57:36.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:36.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:36.438 -07 000000627 INF: FPGA: Recv ZPIEZORD 31067
17-03-17 17:57:36.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:36.448 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.576 V. Piezo Error = -9.4 V.
17-03-17 17:57:36.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35331 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35332 (-166.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35325 (-166.4 uncal um), Max = 35337 (-166.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:57:36.448 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35331, posNoise = 6, negNoise = 6
17-03-17 17:57:36.448 -07 000000610 INF: Z Motor: After move to -0.167283, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:36.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 340 ms)
17-03-17 17:57:36.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:36.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:36.448 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:36.448 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:57:36.448 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:57:36.448 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:57:36.448 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:36.448 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:36.448 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:57:36.448 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:57:36.448 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:36.448 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:57:36.448 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:57:36.448 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:57:36.458 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:57:36.458 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:57:36.458 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:57:36.458 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:57:36.468 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:57:36.468 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:57:36.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36720 150\n [Camera]
17-03-17 17:57:36.548 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:57:36.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:57:36.668 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:57:37.058 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:57:37.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:57:37.058 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:37.058 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:57:37.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:57:37.058 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:37.068 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:37.068 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:57:37.068 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:37.068 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:57:37.248 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36720 776
17-03-17 17:57:37.398 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:57:37.438 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 17:57:37.438 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 17:57:37.438 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:37.438 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:57:37.438 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 17:57:37.438 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:37.438 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:37.438 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:37.438 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:57:37.448 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:57:37.588 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:57:37.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:57:37.588 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:37.588 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:57:37.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:57:37.588 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:37.598 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:37.598 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 17:57:37.598 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:37.598 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1049759792, 0x0, 418435064) start.
17-03-17 17:57:37.778 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:57:37.778 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:57:37.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36720 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 17:57:37.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:57:37.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.167297191191691. ------
17-03-17 17:57:37.788 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17346 mm
17-03-17 17:57:37.788 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:57:37.788 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:37.788 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 17:57:37.788 -07 000000458 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 17:57:37.788 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37891, sync = True, waitForSettling = False)
17-03-17 17:57:37.788 -07 000000501 INF: Z Motor: Moving to -0.173454 mm, started at -0.167297 mm, distance = -6.16 um
17-03-17 17:57:37.788 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:37.798 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:57:37.798 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:37.798 -07 000000627 INF: FPGA: Recv YRDPOS 146473
17-03-17 17:57:37.808 -07 000000501 INF: FPGA: Xmit ZDACW 37891\n [Z Motor]
17-03-17 17:57:37.808 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:57:37.808 -07 000000458 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:37.808 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:57:37.808 -07 000000458 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:57:37.808 -07 000000458 INF: Y Motor: Moving 1348 steps-27
17-03-17 17:57:37.818 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:57:37.818 -07 000000501 INF: FPGA: 'ZDACW 37891' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:57:37.828 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:57:37.838 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:37.838 -07 000000593 INF: FPGA: Recv ZDACR 37891
17-03-17 17:57:37.848 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:57:37.848 -07 000000501 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 17:57:37.978 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:57:37.978 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:57:37.978 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:37.978 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1049759792, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:57:37.978 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:57:37.978 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:37.978 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:37.978 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:57:37.988 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:37.998 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:57:38.018 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:57:38.018 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:57:38.198 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 17:57:38.198 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 17:57:38.238 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:38.238 -07 000000480 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:57:38.248 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:57:38.248 -07 000000458 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:38.248 -07 000000458 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 17:57:38.248 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.843 mm, average velocity = 2.156 mm/sec
17-03-17 17:57:39.198 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:39.198 -07 000000480 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:57:39.208 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:39.208 -07 000000458 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:39.228 -07 000000458 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:57:39.228 -07 000000458 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:57:39.228 -07 000000458 INF: Y Motor: Moved to 72.3501 after 1435 ms (table move)
17-03-17 17:57:39.228 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173454 mm (DAC = 37891)
17-03-17 17:57:39.228 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:39.228 -07 000000478 INF: FPGA: Recv ZSGSRD 36295
17-03-17 17:57:39.238 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:57:39.238 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:39.238 -07 000000623 INF: FPGA: Recv ZSGSRD 36296
17-03-17 17:57:39.248 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:57:39.248 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:39.248 -07 000000459 INF: FPGA: Recv ZSGSRD 36288
17-03-17 17:57:39.258 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:39.258 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:39.258 -07 000000593 INF: FPGA: Recv ZSGSRD 36288
17-03-17 17:57:39.268 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:39.268 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:39.268 -07 000000478 INF: FPGA: Recv ZSGSRD 36296
17-03-17 17:57:39.278 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:39.278 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:39.278 -07 000000623 INF: FPGA: Recv ZSGSRD 36289
17-03-17 17:57:39.288 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:39.288 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:39.288 -07 000000486 INF: FPGA: Recv ZSGSRD 36296
17-03-17 17:57:39.298 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:39.298 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:39.298 -07 000000433 INF: FPGA: Recv ZSGSRD 36288
17-03-17 17:57:39.308 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:39.308 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:39.308 -07 000000501 INF: FPGA: Recv ZSGSRD 36293
17-03-17 17:57:39.318 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:39.318 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:39.318 -07 000000482 INF: FPGA: Recv ZSGSRD 36286
17-03-17 17:57:39.328 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:39.328 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:39.328 -07 000000486 INF: FPGA: Recv ZPIEZORD 32390
17-03-17 17:57:39.338 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:39.338 -07 000000409 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.782 V. Piezo Error = -8.6 V.
17-03-17 17:57:39.338 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36292 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36291 (-172.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36286 (-172.5 uncal um), Max = 36296 (-172.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:57:39.338 -07 000000409 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36292, posNoise = 4, negNoise = 6
17-03-17 17:57:39.338 -07 000000409 INF: Z Motor: After move to -0.173454, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:39.338 -07 000000409 INF: Z Motor: Settle wait time = 1438 ms, measure time = 107 ms (allowed 150 ms), total time = 1545 ms
17-03-17 17:57:39.338 -07 000000409 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:57:39.388 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 17:57:39.388 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:57:39.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:39.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:39.388 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:39.388 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:57:39.388 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:39.388 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:39.388 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:57:39.388 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:57:39.398 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:57:39.398 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:57:39.398 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:57:39.398 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:57:39.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:57:39.448 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:57:39.648 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:57:39.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:57:39.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:57:39.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1102057120, 0x0, 559484976) start.
17-03-17 17:57:39.688 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:57:39.688 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 17:57:39.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 17:57:39.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1102057120, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:57:39.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:39.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:57:39.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 17:57:39.888 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:39.888 -07 000000551 INF: Autofocus start
17-03-17 17:57:39.888 -07 000000551 INF: MeasureProfile start
17-03-17 17:57:39.888 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:39.898 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:57:39.898 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:57:39.898 -07 000000551 INF: MeasureProfile done
17-03-17 17:57:39.908 -07 000000551 INF: X=-32  Z correction [um]=-0.2344
17-03-17 17:57:39.908 -07 000000551 INF: Autofocus finished
17-03-17 17:57:40.098 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:57:40.098 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:57:40.098 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.173470859059924. ----------
17-03-17 17:57:40.098 -07 000000610 INF: Cycle	7	Tile	16	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:57:40.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36353, sync = True, waitForSettling = True)
17-03-17 17:57:40.108 -07 000000610 INF: Z Motor: Moving to -0.166413 mm, started at -0.173471 mm, distance = 7.06 um
17-03-17 17:57:40.108 -07 000000610 INF: FPGA: Xmit ZDACW 36353\n [Z Motor]
17-03-17 17:57:40.108 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:57:40.118 -07 000000610 INF: FPGA: 'ZDACW 36353' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:57:40.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:40.118 -07 000000623 INF: FPGA: Recv ZDACR 36353
17-03-17 17:57:40.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:40.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:57:40.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:40.278 -07 000000409 INF: FPGA: Recv ZSGSRD 35191
17-03-17 17:57:40.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:40.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:40.288 -07 000000458 INF: FPGA: Recv ZSGSRD 35194
17-03-17 17:57:40.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:40.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:40.298 -07 000000459 INF: FPGA: Recv ZSGSRD 35197
17-03-17 17:57:40.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:40.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:40.308 -07 000000486 INF: FPGA: Recv ZSGSRD 35203
17-03-17 17:57:40.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:40.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:40.318 -07 000000551 INF: FPGA: Recv ZSGSRD 35197
17-03-17 17:57:40.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:40.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:40.328 -07 000000593 INF: FPGA: Recv ZSGSRD 35192
17-03-17 17:57:40.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:40.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:40.338 -07 000000501 INF: FPGA: Recv ZSGSRD 35196
17-03-17 17:57:40.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:40.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:40.348 -07 000000478 INF: FPGA: Recv ZSGSRD 35191
17-03-17 17:57:40.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:40.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:40.358 -07 000000486 INF: FPGA: Recv ZSGSRD 35194
17-03-17 17:57:40.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:40.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:40.368 -07 000000480 INF: FPGA: Recv ZSGSRD 35196
17-03-17 17:57:40.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:40.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:40.378 -07 000000409 INF: FPGA: Recv ZPIEZORD 30915
17-03-17 17:57:40.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:40.388 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.547 V. Piezo Error = -9.4 V.
17-03-17 17:57:40.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35195 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35195 (-165.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35191 (-165.5 uncal um), Max = 35203 (-165.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:57:40.388 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35195, posNoise = 8, negNoise = 4
17-03-17 17:57:40.388 -07 000000610 INF: Z Motor: After move to -0.166413, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:40.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:57:40.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:40.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:40.388 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:40.388 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:40.388 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:57:40.388 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:57:40.388 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:40.388 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:57:40.388 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:57:40.388 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:57:40.388 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:40.388 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:57:40.398 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:57:40.398 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:57:40.398 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:40.398 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:57:40.408 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:57:40.408 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:57:40.408 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:57:40.408 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:57:40.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36529 150\n [Camera]
17-03-17 17:57:40.608 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:57:40.998 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:57:40.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:57:40.998 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:40.998 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:40.998 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 17:57:40.998 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:57:40.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:57:40.998 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:41.118 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:41.118 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 17:57:41.188 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36529 776
17-03-17 17:57:41.338 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:57:41.378 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:57:41.378 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:57:41.378 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:41.378 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:57:41.378 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:57:41.488 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 17:57:41.488 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 17:57:41.488 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:41.488 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:57:41.498 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 496 ms.
17-03-17 17:57:41.528 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:57:41.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:57:41.528 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:41.528 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:57:41.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:57:41.528 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:41.538 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:41.538 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:57:41.538 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:41.538 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 17:57:41.548 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:57:41.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:57:41.718 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 17:57:41.718 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:57:41.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36529 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-17 17:57:41.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:57:41.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.166423498340412. ------
17-03-17 17:57:41.728 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 4.030322,
17-03-17 17:57:41.728 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17293 mm
17-03-17 17:57:41.728 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:57:41.738 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:41.738 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 17:57:41.738 -07 000000478 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 17:57:41.738 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37776, sync = True, waitForSettling = False)
17-03-17 17:57:41.738 -07 000000627 INF: Z Motor: Moving to -0.172927 mm, started at -0.166423 mm, distance = -6.50 um
17-03-17 17:57:41.738 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:41.748 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:57:41.748 -07 000000627 INF: FPGA: Xmit ZDACW 37776\n [Z Motor]
17-03-17 17:57:41.748 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 17:57:41.758 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:41.758 -07 000000627 INF: FPGA: 'ZDACW 37776' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:57:41.758 -07 000000448 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:57:41.768 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:57:41.768 -07 000000478 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:41.768 -07 000000478 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:57:41.768 -07 000000478 INF: Y Motor: Moving 1348 steps-26
17-03-17 17:57:41.778 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:57:41.788 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:41.788 -07 000000482 INF: FPGA: Recv ZDACR 37776
17-03-17 17:57:41.798 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:57:41.798 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 17:57:41.798 -07 000000627 INF: Z Motor: MoveAbsStepped took 59 ms (did NOT wait for settling yet))
17-03-17 17:57:41.928 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 17:57:41.928 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:57:41.928 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:41.928 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 17:57:41.928 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:57:41.928 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:41.928 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:41.928 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:41.928 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 17:57:41.938 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 17:57:41.978 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:57:41.978 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 17:57:42.168 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 17:57:42.168 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 17:57:42.208 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:42.218 -07 000000409 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:57:42.218 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:57:42.218 -07 000000478 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:42.218 -07 000000478 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 17:57:42.218 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.843 mm, average velocity = 2.065 mm/sec
17-03-17 17:57:43.168 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:43.168 -07 000000593 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:57:43.178 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:43.178 -07 000000478 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:43.198 -07 000000478 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:57:43.198 -07 000000478 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:57:43.198 -07 000000478 INF: Y Motor: Moved to 73.1763 after 1461 ms (table move)
17-03-17 17:57:43.198 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172927 mm (DAC = 37776)
17-03-17 17:57:43.198 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:43.198 -07 000000459 INF: FPGA: Recv ZSGSRD 36205
17-03-17 17:57:43.208 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:57:43.208 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:43.208 -07 000000480 INF: FPGA: Recv ZSGSRD 36205
17-03-17 17:57:43.218 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:43.218 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:43.218 -07 000000551 INF: FPGA: Recv ZSGSRD 36209
17-03-17 17:57:43.228 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:43.228 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:43.228 -07 000000409 INF: FPGA: Recv ZSGSRD 36208
17-03-17 17:57:43.238 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:43.238 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:43.238 -07 000000480 INF: FPGA: Recv ZSGSRD 36207
17-03-17 17:57:43.248 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:43.248 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:43.248 -07 000000459 INF: FPGA: Recv ZSGSRD 36206
17-03-17 17:57:43.258 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:43.258 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:43.258 -07 000000431 INF: FPGA: Recv ZSGSRD 36213
17-03-17 17:57:43.268 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:43.268 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:43.268 -07 000000433 INF: FPGA: Recv ZSGSRD 36206
17-03-17 17:57:43.278 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:43.278 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:43.278 -07 000000458 INF: FPGA: Recv ZSGSRD 36203
17-03-17 17:57:43.288 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:43.288 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:43.288 -07 000000448 INF: FPGA: Recv ZSGSRD 36209
17-03-17 17:57:43.298 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:43.298 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:43.298 -07 000000480 INF: FPGA: Recv ZPIEZORD 32287
17-03-17 17:57:43.308 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:43.308 -07 000000476 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.764 V. Piezo Error = -8.7 V.
17-03-17 17:57:43.308 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36207 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36206 (-172.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36203 (-172.0 uncal um), Max = 36213 (-172.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:57:43.308 -07 000000476 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36207, posNoise = 6, negNoise = 4
17-03-17 17:57:43.308 -07 000000476 INF: Z Motor: After move to -0.172927, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:43.308 -07 000000476 INF: Z Motor: Settle wait time = 1464 ms, measure time = 105 ms (allowed 150 ms), total time = 1569 ms
17-03-17 17:57:43.308 -07 000000476 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 17:57:43.358 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-17 17:57:43.358 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:57:43.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:43.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:43.358 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:43.358 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:43.358 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:57:43.358 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:43.368 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:43.368 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:57:43.368 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:43.368 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:57:43.378 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:57:43.378 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:57:43.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:57:43.428 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:57:43.628 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:57:43.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:57:43.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:57:43.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 17:57:43.668 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:57:43.668 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 17:57:43.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 17:57:43.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 17:57:43.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:43.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:57:43.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 17:57:43.868 -07 000000431 INF: Autofocus start
17-03-17 17:57:43.868 -07 000000431 INF: MeasureProfile start
17-03-17 17:57:43.868 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:43.868 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:43.878 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:57:43.878 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:57:43.878 -07 000000431 INF: MeasureProfile done
17-03-17 17:57:43.878 -07 000000431 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:57:43.878 -07 000000431 INF: Autofocus finished
17-03-17 17:57:44.078 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:57:44.078 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:57:44.078 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.172924801027874. ----------
17-03-17 17:57:44.078 -07 000000610 INF: Cycle	7	Tile	17	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:57:44.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36291, sync = True, waitForSettling = True)
17-03-17 17:57:44.088 -07 000000610 INF: Z Motor: Moving to -0.166130 mm, started at -0.172925 mm, distance = 6.80 um
17-03-17 17:57:44.088 -07 000000610 INF: FPGA: Xmit ZDACW 36291\n [Z Motor]
17-03-17 17:57:44.088 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 17:57:44.098 -07 000000610 INF: FPGA: 'ZDACW 36291' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:57:44.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:44.098 -07 000000482 INF: FPGA: Recv ZDACR 36291
17-03-17 17:57:44.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:44.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:57:44.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:44.258 -07 000000576 INF: FPGA: Recv ZSGSRD 35150
17-03-17 17:57:44.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:44.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:44.268 -07 000000478 INF: FPGA: Recv ZSGSRD 35147
17-03-17 17:57:44.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:44.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:44.278 -07 000000409 INF: FPGA: Recv ZSGSRD 35155
17-03-17 17:57:44.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:44.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:44.288 -07 000000433 INF: FPGA: Recv ZSGSRD 35146
17-03-17 17:57:44.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:44.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:44.298 -07 000000627 INF: FPGA: Recv ZSGSRD 35155
17-03-17 17:57:44.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:44.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:44.308 -07 000000448 INF: FPGA: Recv ZSGSRD 35151
17-03-17 17:57:44.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:44.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:44.318 -07 000000478 INF: FPGA: Recv ZSGSRD 35152
17-03-17 17:57:44.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:44.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:44.328 -07 000000409 INF: FPGA: Recv ZSGSRD 35146
17-03-17 17:57:44.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:44.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:44.338 -07 000000431 INF: FPGA: Recv ZSGSRD 35153
17-03-17 17:57:44.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:44.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:44.348 -07 000000623 INF: FPGA: Recv ZSGSRD 35151
17-03-17 17:57:44.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:44.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:44.358 -07 000000448 INF: FPGA: Recv ZPIEZORD 30884
17-03-17 17:57:44.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:44.368 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.538 V. Piezo Error = -9.4 V.
17-03-17 17:57:44.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35151 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35151 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35146 (-165.2 uncal um), Max = 35155 (-165.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:57:44.368 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35151, posNoise = 4, negNoise = 5
17-03-17 17:57:44.368 -07 000000610 INF: Z Motor: After move to -0.166130, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:44.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:57:44.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:44.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:44.368 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:44.368 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:44.368 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:57:44.368 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:57:44.368 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:57:44.368 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:44.368 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:57:44.368 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:57:44.368 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:57:44.368 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:57:44.378 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:57:44.378 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:57:44.378 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:57:44.378 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:57:44.378 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:57:44.378 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:57:44.388 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:57:44.388 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:57:44.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36468 150\n [Camera]
17-03-17 17:57:44.588 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:57:44.978 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:57:44.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:57:44.978 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:44.978 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:57:44.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:57:44.978 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:45.098 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:45.098 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1049759792, 0x0, 391868352) start.
17-03-17 17:57:45.108 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:45.108 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 17:57:45.168 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36468 776
17-03-17 17:57:45.318 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:57:45.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1049759792, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 17:57:45.478 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 17:57:45.478 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:45.478 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:57:45.478 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:57:45.478 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:45.478 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:57:45.478 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 17:57:45.478 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:57:45.488 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-17 17:57:45.508 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:57:45.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:57:45.508 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:45.508 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:57:45.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:57:45.508 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:45.518 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:45.518 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:57:45.518 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:45.518 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 17:57:45.698 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 17:57:45.698 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:57:45.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36468 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-17 17:57:45.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:57:45.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166140833006174. ------
17-03-17 17:57:45.708 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:45.708 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17248 mm
17-03-17 17:57:45.708 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:57:45.708 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:45.708 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 17:57:45.708 -07 000000501 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 17:57:45.708 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 37678, sync = True, waitForSettling = False)
17-03-17 17:57:45.708 -07 000000593 INF: Z Motor: Moving to -0.172479 mm, started at -0.166141 mm, distance = -6.34 um
17-03-17 17:57:45.718 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:57:45.718 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:45.718 -07 000000576 INF: FPGA: Recv YRDPOS 149866
17-03-17 17:57:45.728 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:57:45.728 -07 000000501 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:45.728 -07 000000593 INF: FPGA: Xmit ZDACW 37678\n [Z Motor]
17-03-17 17:57:45.728 -07 000000501 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:57:45.728 -07 000000501 INF: Y Motor: Moving 1353 steps-33
17-03-17 17:57:45.728 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:57:45.738 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:57:45.738 -07 000000593 INF: FPGA: 'ZDACW 37678' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 17:57:45.748 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:57:45.758 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:45.758 -07 000000627 INF: FPGA: Recv ZDACR 37678
17-03-17 17:57:45.768 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:57:45.768 -07 000000593 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 17:57:45.908 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 17:57:45.908 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:57:45.908 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:45.908 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:57:45.908 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 17:57:45.908 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:57:45.908 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:45.918 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:57:45.918 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:57:45.928 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 17:57:45.938 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:57:45.938 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 17:57:46.128 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 17:57:46.128 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-17 17:57:46.148 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:46.158 -07 000000433 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:57:46.158 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:57:46.158 -07 000000501 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:46.158 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:57:46.158 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-17 17:57:46.548 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:57:46.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:57:47.108 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:47.108 -07 000000476 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:57:47.118 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:47.118 -07 000000501 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:47.138 -07 000000501 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:57:47.138 -07 000000501 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:57:47.138 -07 000000501 INF: Y Motor: Moved to 74.0088 after 1424 ms (table move)
17-03-17 17:57:47.138 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172479 mm (DAC = 37678)
17-03-17 17:57:47.138 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:47.138 -07 000000433 INF: FPGA: Recv ZSGSRD 36144
17-03-17 17:57:47.148 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:57:47.158 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:47.158 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 4.000345,
17-03-17 17:57:47.158 -07 000000476 INF: FPGA: Recv ZSGSRD 36145
17-03-17 17:57:47.168 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:57:47.188 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:47.188 -07 000000627 INF: FPGA: Recv ZSGSRD 36139
17-03-17 17:57:47.198 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:57:47.208 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:47.208 -07 000000476 INF: FPGA: Recv ZSGSRD 36142
17-03-17 17:57:47.218 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:57:47.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:47.218 -07 000000501 INF: FPGA: Recv ZSGSRD 36140
17-03-17 17:57:47.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:47.248 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:47.248 -07 000000431 INF: FPGA: Recv ZSGSRD 36141
17-03-17 17:57:47.258 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:57:47.258 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:47.258 -07 000000448 INF: FPGA: Recv ZSGSRD 36144
17-03-17 17:57:47.268 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:47.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:47.268 -07 000000623 INF: FPGA: Recv ZSGSRD 36135
17-03-17 17:57:47.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:47.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:47.278 -07 000000459 INF: FPGA: Recv ZSGSRD 36140
17-03-17 17:57:47.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:47.288 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:47.288 -07 000000593 INF: FPGA: Recv ZSGSRD 36139
17-03-17 17:57:47.298 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:47.298 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:47.298 -07 000000501 INF: FPGA: Recv ZPIEZORD 32200
17-03-17 17:57:47.308 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:47.308 -07 000000482 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.749 V. Piezo Error = -8.7 V.
17-03-17 17:57:47.308 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36141 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36140 (-171.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36135 (-171.6 uncal um), Max = 36145 (-171.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:57:47.308 -07 000000482 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36141, posNoise = 4, negNoise = 6
17-03-17 17:57:47.308 -07 000000482 INF: Z Motor: After move to -0.172479, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:47.308 -07 000000482 INF: Z Motor: Settle wait time = 1427 ms, measure time = 165 ms (allowed 150 ms), total time = 1592 ms
17-03-17 17:57:47.308 -07 000000482 INF: Z Motor: Warning: Actual position measuring time = 165 ms, longer than max expected time of 150 ms
17-03-17 17:57:47.308 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 17:57:47.308 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:57:47.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:47.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:47.318 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:47.318 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:47.318 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:57:47.318 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:47.318 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:57:47.318 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:57:47.318 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:47.318 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:57:47.328 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:57:47.328 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:57:47.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:57:47.378 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:57:47.578 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:57:47.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:57:47.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:57:47.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 17:57:47.618 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:57:47.618 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:57:47.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 17:57:47.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 17:57:47.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:47.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:57:47.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 17:57:47.718 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:47.718 -07 000000476 INF: Autofocus start
17-03-17 17:57:47.718 -07 000000476 INF: MeasureProfile start
17-03-17 17:57:47.718 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:47.728 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:57:47.728 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:57:47.728 -07 000000476 INF: MeasureProfile done
17-03-17 17:57:47.728 -07 000000476 INF: X=32  Z correction [um]=0.09220707
17-03-17 17:57:47.728 -07 000000476 INF: Autofocus finished
17-03-17 17:57:47.928 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:57:47.928 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:57:47.928 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.172500803026518. ----------
17-03-17 17:57:47.928 -07 000000610 INF: Cycle	7	Tile	18	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:57:47.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36211, sync = True, waitForSettling = True)
17-03-17 17:57:47.938 -07 000000610 INF: Z Motor: Moving to -0.165763 mm, started at -0.172501 mm, distance = 6.74 um
17-03-17 17:57:47.938 -07 000000610 INF: FPGA: Xmit ZDACW 36211\n [Z Motor]
17-03-17 17:57:47.938 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:57:47.948 -07 000000610 INF: FPGA: 'ZDACW 36211' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:47.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:47.948 -07 000000486 INF: FPGA: Recv ZDACR 36211
17-03-17 17:57:47.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:47.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:57:48.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:48.108 -07 000000478 INF: FPGA: Recv ZSGSRD 35095
17-03-17 17:57:48.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:48.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:48.118 -07 000000480 INF: FPGA: Recv ZSGSRD 35093
17-03-17 17:57:48.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:48.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:48.128 -07 000000476 INF: FPGA: Recv ZSGSRD 35090
17-03-17 17:57:48.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:48.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:48.138 -07 000000478 INF: FPGA: Recv ZSGSRD 35099
17-03-17 17:57:48.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:48.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:48.148 -07 000000482 INF: FPGA: Recv ZSGSRD 35099
17-03-17 17:57:48.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:48.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:48.158 -07 000000627 INF: FPGA: Recv ZSGSRD 35094
17-03-17 17:57:48.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:48.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:48.168 -07 000000431 INF: FPGA: Recv ZSGSRD 35095
17-03-17 17:57:48.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:48.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:48.178 -07 000000551 INF: FPGA: Recv ZSGSRD 35095
17-03-17 17:57:48.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:48.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:48.188 -07 000000433 INF: FPGA: Recv ZSGSRD 35093
17-03-17 17:57:48.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:48.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:48.198 -07 000000409 INF: FPGA: Recv ZSGSRD 35094
17-03-17 17:57:48.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:48.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:48.208 -07 000000627 INF: FPGA: Recv ZPIEZORD 30815
17-03-17 17:57:48.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:48.218 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.525 V. Piezo Error = -9.4 V.
17-03-17 17:57:48.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35095 (-164.9 uncal um), Error = 0.8 uncal um, Median = 35094 (-164.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35090 (-164.9 uncal um), Max = 35099 (-164.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:57:48.218 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35095, posNoise = 4, negNoise = 5
17-03-17 17:57:48.218 -07 000000610 INF: Z Motor: After move to -0.165763, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:48.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:57:48.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:48.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:48.218 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:48.218 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:57:48.218 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:48.218 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:57:48.218 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:57:48.218 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:48.218 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:57:48.218 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:57:48.218 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 17:57:48.218 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:57:48.218 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:57:48.218 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:57:48.228 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:48.228 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:57:48.228 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:57:48.228 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:57:48.228 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:57:48.228 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:57:48.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36388 150\n [Camera]
17-03-17 17:57:48.438 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:57:48.828 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:57:48.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:57:48.828 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:48.828 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:48.828 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1085182056, 0x0, 391868352) start.
17-03-17 17:57:48.828 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:57:48.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:57:48.828 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:48.828 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:48.828 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1120604320, 0x0, 418435064) start.
17-03-17 17:57:49.018 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36388 778
17-03-17 17:57:49.168 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:57:49.198 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1120604320, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:57:49.198 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:57:49.198 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:49.198 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1085182056, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:57:49.208 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:57:49.208 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:49.208 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:49.208 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:49.208 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:57:49.218 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:57:49.358 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:57:49.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:57:49.358 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:49.478 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:57:49.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:57:49.478 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:49.478 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:49.478 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:57:49.478 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:49.478 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:57:49.548 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:57:49.548 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:57:49.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36388 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-17 17:57:49.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:57:49.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.165781077126236. ------
17-03-17 17:57:49.548 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:49.558 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17210 mm
17-03-17 17:57:49.558 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:57:49.558 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:49.558 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:57:49.558 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:57:49.558 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 17:57:49.558 -07 000000576 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 17:57:49.558 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37596, sync = True, waitForSettling = False)
17-03-17 17:57:49.558 -07 000000501 INF: Z Motor: Moving to -0.172103 mm, started at -0.165781 mm, distance = -6.32 um
17-03-17 17:57:49.568 -07 000000501 INF: FPGA: Xmit ZDACW 37596\n [Z Motor]
17-03-17 17:57:49.568 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 17:57:49.578 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:49.578 -07 000000501 INF: FPGA: 'ZDACW 37596' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:57:49.578 -07 000000459 INF: FPGA: Recv YRDPOS 151571
17-03-17 17:57:49.588 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:57:49.588 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:49.588 -07 000000576 INF: Y Motor: Encoder = 151571 = motor step 118414.8 = 74.0093 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:49.588 -07 000000478 INF: FPGA: Recv ZDACR 37596
17-03-17 17:57:49.588 -07 000000576 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:57:49.588 -07 000000576 INF: Y Motor: Moving 1349 steps-28
17-03-17 17:57:49.598 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:57:49.598 -07 000000501 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:57:49.598 -07 000000501 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 17:57:49.758 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:57:49.758 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 17:57:49.858 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:57:49.858 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:57:49.858 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:49.858 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:57:49.858 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:57:49.858 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:49.858 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:49.858 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:49.858 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 17:57:49.868 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:57:49.968 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 17:57:49.968 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 17:57:49.998 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:49.998 -07 000000448 INF: FPGA: Recv YRDPOS 153257
17-03-17 17:57:50.008 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:50.008 -07 000000576 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:50.008 -07 000000576 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 17:57:50.008 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.844 mm, average velocity = 2.221 mm/sec
17-03-17 17:57:50.958 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:50.958 -07 000000551 INF: FPGA: Recv YRDPOS 153257
17-03-17 17:57:50.968 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:50.968 -07 000000576 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:50.978 -07 000000576 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:57:50.978 -07 000000576 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:57:50.978 -07 000000576 INF: Y Motor: Moved to 74.8325 after 1425 ms (table move)
17-03-17 17:57:50.988 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172103 mm (DAC = 37596)
17-03-17 17:57:50.988 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:50.988 -07 000000478 INF: FPGA: Recv ZSGSRD 36076
17-03-17 17:57:50.998 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:57:50.998 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:50.998 -07 000000459 INF: FPGA: Recv ZSGSRD 36079
17-03-17 17:57:51.008 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:51.008 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:51.008 -07 000000409 INF: FPGA: Recv ZSGSRD 36081
17-03-17 17:57:51.018 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:51.018 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:51.018 -07 000000478 INF: FPGA: Recv ZSGSRD 36077
17-03-17 17:57:51.028 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:51.028 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:51.028 -07 000000459 INF: FPGA: Recv ZSGSRD 36071
17-03-17 17:57:51.038 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:51.038 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:51.038 -07 000000458 INF: FPGA: Recv ZSGSRD 36086
17-03-17 17:57:51.048 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:51.048 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:51.048 -07 000000480 INF: FPGA: Recv ZSGSRD 36090
17-03-17 17:57:51.058 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:51.058 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:51.058 -07 000000486 INF: FPGA: Recv ZSGSRD 36086
17-03-17 17:57:51.068 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:51.068 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:51.068 -07 000000409 INF: FPGA: Recv ZSGSRD 36084
17-03-17 17:57:51.078 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:51.078 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:51.078 -07 000000593 INF: FPGA: Recv ZSGSRD 36080
17-03-17 17:57:51.088 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:51.088 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:51.088 -07 000000459 INF: FPGA: Recv ZPIEZORD 32165
17-03-17 17:57:51.098 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:51.098 -07 000000482 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.737 V. Piezo Error = -8.7 V.
17-03-17 17:57:51.098 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36081 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36080 (-171.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36071 (-171.2 uncal um), Max = 36090 (-171.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:57:51.098 -07 000000482 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36081, posNoise = 9, negNoise = 10
17-03-17 17:57:51.098 -07 000000482 INF: Z Motor: After move to -0.172103, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:51.098 -07 000000482 INF: Z Motor: Settle wait time = 1427 ms, measure time = 109 ms (allowed 150 ms), total time = 1536 ms
17-03-17 17:57:51.098 -07 000000482 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:57:51.148 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 17:57:51.148 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:57:51.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:51.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:51.148 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:51.148 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:51.148 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:57:51.148 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:51.158 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:57:51.158 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:57:51.158 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:51.158 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:57:51.168 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:57:51.168 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:57:51.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:57:51.218 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:57:51.408 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:57:51.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:57:51.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:57:51.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:57:51.448 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:57:51.448 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 17:57:51.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 17:57:51.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:57:51.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:51.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:57:51.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:57:51.548 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:57:51.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:57:51.658 -07 000000459 INF: Autofocus start
17-03-17 17:57:51.658 -07 000000459 INF: MeasureProfile start
17-03-17 17:57:51.658 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:51.658 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:51.668 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:57:51.668 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:57:51.668 -07 000000459 INF: MeasureProfile done
17-03-17 17:57:51.668 -07 000000459 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:57:51.668 -07 000000459 INF: Autofocus finished
17-03-17 17:57:51.868 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:57:51.868 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:57:51.868 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.172115350298012. ----------
17-03-17 17:57:51.868 -07 000000610 INF: Cycle	7	Tile	19	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:57:51.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36111, sync = True, waitForSettling = True)
17-03-17 17:57:51.878 -07 000000610 INF: Z Motor: Moving to -0.165306 mm, started at -0.172115 mm, distance = 6.81 um
17-03-17 17:57:51.878 -07 000000610 INF: FPGA: Xmit ZDACW 36111\n [Z Motor]
17-03-17 17:57:51.878 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:57:51.888 -07 000000610 INF: FPGA: 'ZDACW 36111' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:57:51.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:51.888 -07 000000459 INF: FPGA: Recv ZDACR 36111
17-03-17 17:57:51.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:57:51.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:57:52.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:52.048 -07 000000448 INF: FPGA: Recv ZSGSRD 35025
17-03-17 17:57:52.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:57:52.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:52.058 -07 000000593 INF: FPGA: Recv ZSGSRD 35026
17-03-17 17:57:52.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:52.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:52.068 -07 000000433 INF: FPGA: Recv ZSGSRD 35025
17-03-17 17:57:52.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:52.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:52.078 -07 000000482 INF: FPGA: Recv ZSGSRD 35023
17-03-17 17:57:52.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:52.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:52.088 -07 000000409 INF: FPGA: Recv ZSGSRD 35021
17-03-17 17:57:52.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:52.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:52.098 -07 000000431 INF: FPGA: Recv ZSGSRD 35026
17-03-17 17:57:52.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:52.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:52.108 -07 000000478 INF: FPGA: Recv ZSGSRD 35027
17-03-17 17:57:52.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:52.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:52.118 -07 000000433 INF: FPGA: Recv ZSGSRD 35024
17-03-17 17:57:52.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:52.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:52.128 -07 000000482 INF: FPGA: Recv ZSGSRD 35017
17-03-17 17:57:52.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:52.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:52.138 -07 000000459 INF: FPGA: Recv ZSGSRD 35023
17-03-17 17:57:52.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:52.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:52.148 -07 000000627 INF: FPGA: Recv ZPIEZORD 30752
17-03-17 17:57:52.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:52.158 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.510 V. Piezo Error = -9.4 V.
17-03-17 17:57:52.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35024 (-164.5 uncal um), Error = 0.8 uncal um, Median = 35024 (-164.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35017 (-164.4 uncal um), Max = 35027 (-164.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:57:52.158 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35024, posNoise = 3, negNoise = 7
17-03-17 17:57:52.158 -07 000000610 INF: Z Motor: After move to -0.165306, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:52.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:57:52.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:52.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:52.158 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:52.158 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:57:52.158 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:52.158 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:57:52.158 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:57:52.158 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:52.158 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:57:52.158 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:57:52.158 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:57:52.158 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:57:52.168 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 17:57:52.168 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:57:52.168 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:57:52.168 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:57:52.178 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:57:52.178 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:57:52.178 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:57:52.178 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:57:52.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36287 150\n [Camera]
17-03-17 17:57:52.378 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:57:52.568 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 4.004458,
17-03-17 17:57:52.768 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:57:52.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:57:52.768 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:52.768 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:57:52.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:57:52.778 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:52.778 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:52.778 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 17:57:52.778 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:52.778 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 17:57:52.958 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36287 776
17-03-17 17:57:53.108 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:57:53.158 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:57:53.158 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:57:53.158 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:53.158 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:57:53.158 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 17:57:53.158 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:53.158 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:53.158 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:53.158 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:57:53.168 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:57:53.298 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:57:53.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:57:53.298 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:57:53.408 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:57:53.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:57:53.408 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:57:53.408 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 17:57:53.408 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:57:53.418 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:57:53.418 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:57:53.488 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:57:53.488 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:57:53.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36287 150' command took 2 ms to send, 1308 ms to get response, and 1313 ms overall
17-03-17 17:57:53.798 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 17:57:53.798 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 17:57:53.798 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:53.798 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 17:57:53.798 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:57:53.798 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:53.808 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:53.808 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:57:53.808 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 17:57:53.808 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 17:57:53.808 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 17:57:53.848 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 17:57:53.848 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 17:57:53.888 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 17:57:53.898 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 17:57:53.898 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 17:57:53.898 -07 000000448 INF: FPGA: Recv EMCUR 
17-03-17 17:57:53.908 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:57:53.908 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 17:57:54.408 -07 000000431 INF: FPGA: Recv EMIN
17-03-17 17:57:54.408 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 17:57:54.408 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 17:57:54.408 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-17 17:57:54.418 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:57:54.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:57:54.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.165324958064171. ------
17-03-17 17:57:54.418 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:54.418 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13983 mm
17-03-17 17:57:54.418 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:57:54.428 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 17:57:54.428 -07 000000478 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 17:57:54.428 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:54.428 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:57:54.428 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:54.428 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30545, sync = True, waitForSettling = False)
17-03-17 17:57:54.428 -07 000000551 INF: Z Motor: Moving to -0.139826 mm, started at -0.165325 mm, distance = 25.50 um
17-03-17 17:57:54.428 -07 000000448 INF: FPGA: Recv YRDPOS 153259
17-03-17 17:57:54.438 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:54.438 -07 000000478 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:54.438 -07 000000551 INF: FPGA: Xmit ZDACW 30545\n [Z Motor]
17-03-17 17:57:54.438 -07 000000478 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 17:57:54.438 -07 000000478 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 17:57:54.438 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 17:57:54.448 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:57:54.448 -07 000000551 INF: FPGA: 'ZDACW 30545' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 17:57:54.458 -07 000000478 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 17:57:54.468 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:54.468 -07 000000561 INF: FPGA: Recv ZDACR 30545
17-03-17 17:57:54.478 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:57:54.478 -07 000000551 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 17:57:54.648 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:57:54.648 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 222 ms overall
17-03-17 17:57:56.078 -07 000000448 INF: FPGA: Recv YMVTO 122702 23904
17-03-17 17:57:56.078 -07 000000478 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1645 ms overall
17-03-17 17:57:56.078 -07 000000478 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 17:57:56.078 -07 000000478 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 17:57:56.078 -07 000000478 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1646 ms, distance = 14.920 mm, average velocity = 9.064 mm/sec
17-03-17 17:57:56.548 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:57:56.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:57:57.928 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.98264,
17-03-17 17:57:58.928 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:57:58.928 -07 000000623 INF: FPGA: Recv YRDPOS 122699
17-03-17 17:57:58.938 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:58.938 -07 000000478 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:57:58.968 -07 000000478 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:57:58.968 -07 000000478 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -3 counts (-0.001 mm)
17-03-17 17:57:58.968 -07 000000478 INF: Y Motor: Moved to 59.9116 after 4540 ms
17-03-17 17:57:58.968 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139826 mm (DAC = 30545)
17-03-17 17:57:58.968 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:58.968 -07 000000486 INF: FPGA: Recv ZSGSRD 31062
17-03-17 17:57:58.978 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:57:58.978 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:58.978 -07 000000459 INF: FPGA: Recv ZSGSRD 31059
17-03-17 17:57:58.988 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:58.988 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:58.988 -07 000000409 INF: FPGA: Recv ZSGSRD 31056
17-03-17 17:57:58.998 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:58.998 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:58.998 -07 000000433 INF: FPGA: Recv ZSGSRD 31055
17-03-17 17:57:59.008 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:59.008 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:59.008 -07 000000431 INF: FPGA: Recv ZSGSRD 31056
17-03-17 17:57:59.018 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:59.018 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:59.018 -07 000000478 INF: FPGA: Recv ZSGSRD 31062
17-03-17 17:57:59.028 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:59.028 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:59.028 -07 000000551 INF: FPGA: Recv ZSGSRD 31057
17-03-17 17:57:59.038 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:57:59.038 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:59.038 -07 000000627 INF: FPGA: Recv ZSGSRD 31056
17-03-17 17:57:59.048 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:59.048 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:59.048 -07 000000433 INF: FPGA: Recv ZSGSRD 31053
17-03-17 17:57:59.058 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:59.058 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:59.058 -07 000000459 INF: FPGA: Recv ZSGSRD 31056
17-03-17 17:57:59.068 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:59.068 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:57:59.068 -07 000000448 INF: FPGA: Recv ZPIEZORD 26634
17-03-17 17:57:59.078 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:59.078 -07 000000458 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.661 V. Piezo Error = -9.7 V.
17-03-17 17:57:59.078 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.8 um, Read 10 ADC samples: Avg = 31057 (-139.0 uncal um), Error = 0.8 uncal um, Median = 31056 (-139.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31053 (-139.0 uncal um), Max = 31062 (-139.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:57:59.078 -07 000000458 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31057, posNoise = 5, negNoise = 4
17-03-17 17:57:59.078 -07 000000458 INF: Z Motor: After move to -0.139826, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:57:59.078 -07 000000458 INF: Z Motor: Settle wait time = 4542 ms, measure time = 106 ms (allowed 150 ms), total time = 4648 ms
17-03-17 17:57:59.078 -07 000000458 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:57:59.128 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4701 ms
17-03-17 17:57:59.128 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:57:59.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:57:59.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:57:59.128 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:57:59.128 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:57:59.128 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:57:59.138 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:57:59.138 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:57:59.138 -07 000000433 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 17:57:59.158 -07 000000433 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-17 17:57:59.158 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:57:59.158 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:57:59.158 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:57:59.168 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:57:59.168 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-17 17:57:59.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:57:59.208 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:57:59.408 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:57:59.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:57:59.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:57:59.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:57:59.458 -07 000000478 INF: FPGA: Recv @CAMSNAP 284
17-03-17 17:57:59.458 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 17:57:59.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 288 ms overall
17-03-17 17:57:59.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:57:59.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:57:59.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:57:59.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:57:59.558 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:57:59.558 -07 000000486 INF: Image SNR check: start
17-03-17 17:57:59.558 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:57:59.568 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:57:59.568 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:57:59.578 -07 000000486 INF: Image SNR check: pass  [peak (Max-Min)=88.65]
17-03-17 17:57:59.578 -07 000000486 INF: Autofocus start
17-03-17 17:57:59.578 -07 000000486 INF: MeasureProfile start
17-03-17 17:57:59.598 -07 000000486 INF: MeasureProfile done
17-03-17 17:57:59.598 -07 000000486 INF: X=32  Z correction [um]=0.1299841
17-03-17 17:57:59.598 -07 000000486 INF: Autofocus finished
17-03-17 17:57:59.768 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:57:59.768 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:57:59.768 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.139840108497805. ----------
17-03-17 17:57:59.768 -07 000000610 INF: Cycle	7	Tile	1	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:57:59.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29086, sync = True, waitForSettling = True)
17-03-17 17:57:59.778 -07 000000610 INF: Z Motor: Moving to -0.133147 mm, started at -0.139840 mm, distance = 6.69 um
17-03-17 17:57:59.778 -07 000000610 INF: FPGA: Xmit ZDACW 29086\n [Z Motor]
17-03-17 17:57:59.778 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:57:59.788 -07 000000610 INF: FPGA: 'ZDACW 29086' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:57:59.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:57:59.788 -07 000000431 INF: FPGA: Recv ZDACR 29086
17-03-17 17:57:59.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:59.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:57:59.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:59.948 -07 000000627 INF: FPGA: Recv ZSGSRD 30016
17-03-17 17:57:59.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:59.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:59.958 -07 000000593 INF: FPGA: Recv ZSGSRD 30014
17-03-17 17:57:59.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:59.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:59.968 -07 000000501 INF: FPGA: Recv ZSGSRD 30017
17-03-17 17:57:59.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:59.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:59.978 -07 000000433 INF: FPGA: Recv ZSGSRD 30011
17-03-17 17:57:59.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:59.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:59.988 -07 000000486 INF: FPGA: Recv ZSGSRD 30018
17-03-17 17:57:59.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:57:59.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:57:59.998 -07 000000627 INF: FPGA: Recv ZSGSRD 30017
17-03-17 17:58:00.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:00.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:00.008 -07 000000551 INF: FPGA: Recv ZSGSRD 30011
17-03-17 17:58:00.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:00.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:00.018 -07 000000478 INF: FPGA: Recv ZSGSRD 30013
17-03-17 17:58:00.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:00.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:00.028 -07 000000458 INF: FPGA: Recv ZSGSRD 30016
17-03-17 17:58:00.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:00.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:00.038 -07 000000576 INF: FPGA: Recv ZSGSRD 30014
17-03-17 17:58:00.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:00.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:00.048 -07 000000627 INF: FPGA: Recv ZPIEZORD 25474
17-03-17 17:58:00.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:00.058 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.438 V. Piezo Error = -10.0 V.
17-03-17 17:58:00.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30015 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30015 (-132.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30011 (-132.3 uncal um), Max = 30018 (-132.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:58:00.058 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30015, posNoise = 3, negNoise = 4
17-03-17 17:58:00.058 -07 000000610 INF: Z Motor: After move to -0.133147, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:00.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:58:00.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:00.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:00.058 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:00.058 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:00.058 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:00.058 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:00.058 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:00.058 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:00.058 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:58:00.058 -07 000000431 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 17:58:00.058 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:00.058 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:00.068 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:00.068 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:00.078 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:58:00.078 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:58:00.078 -07 000000431 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 17:58:00.078 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:00.088 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:58:00.088 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:00.098 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:58:00.098 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 17:58:00.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29263 150\n [Camera]
17-03-17 17:58:00.298 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:00.688 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:58:00.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:58:00.688 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:00.688 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:58:00.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:58:00.688 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:00.698 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:00.698 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 17:58:00.698 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:00.698 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:58:00.878 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29263 776
17-03-17 17:58:01.028 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:58:01.068 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:58:01.068 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 17:58:01.068 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:01.068 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:01.068 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:58:01.078 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:58:01.078 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:58:01.078 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:01.078 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:01.088 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:58:01.218 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:58:01.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:58:01.218 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:01.218 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:01.218 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 17:58:01.218 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:58:01.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:58:01.218 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:01.228 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:01.228 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 17:58:01.408 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:58:01.408 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:58:01.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29263 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-17 17:58:01.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:58:01.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.13314607944609. ------
17-03-17 17:58:01.418 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:01.418 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13965 mm
17-03-17 17:58:01.418 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:58:01.418 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 17:58:01.418 -07 000000627 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 17:58:01.528 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:01.528 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 17:58:01.528 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:01.528 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30507, sync = True, waitForSettling = False)
17-03-17 17:58:01.528 -07 000000458 INF: Z Motor: Moving to -0.139652 mm, started at -0.133146 mm, distance = -6.51 um
17-03-17 17:58:01.528 -07 000000501 INF: FPGA: Recv YRDPOS 122699
17-03-17 17:58:01.538 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:58:01.538 -07 000000627 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:01.538 -07 000000627 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:58:01.538 -07 000000627 INF: Y Motor: Moving 1330 steps1
17-03-17 17:58:01.538 -07 000000458 INF: FPGA: Xmit ZDACW 30507\n [Z Motor]
17-03-17 17:58:01.538 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 17:58:01.548 -07 000000458 INF: FPGA: 'ZDACW 30507' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:58:01.548 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:01.548 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:58:01.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:58:01.548 -07 000000486 INF: FPGA: Recv ZDACR 30507
17-03-17 17:58:01.558 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:58:01.558 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:01.558 -07 000000458 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 17:58:01.568 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:58:01.598 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:58:01.598 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:58:01.598 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:01.598 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:58:01.598 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:58:01.608 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:01.608 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:01.608 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:58:01.608 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:01.618 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:58:01.758 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:58:01.758 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 227 ms overall
17-03-17 17:58:01.938 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 17:58:01.938 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 17:58:01.968 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:01.968 -07 000000551 INF: FPGA: Recv YRDPOS 124382
17-03-17 17:58:01.978 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:58:01.978 -07 000000627 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:01.978 -07 000000627 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 17:58:01.978 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.831 mm, average velocity = 2.042 mm/sec
17-03-17 17:58:02.928 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:02.928 -07 000000448 INF: FPGA: Recv YRDPOS 124383
17-03-17 17:58:02.938 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:02.938 -07 000000627 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:02.958 -07 000000627 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:58:02.958 -07 000000627 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:58:02.958 -07 000000627 INF: Y Motor: Moved to 60.7339 after 1536 ms (table move)
17-03-17 17:58:02.958 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139652 mm (DAC = 30507)
17-03-17 17:58:02.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:02.958 -07 000000482 INF: FPGA: Recv ZSGSRD 31027
17-03-17 17:58:02.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:02.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:02.968 -07 000000576 INF: FPGA: Recv ZSGSRD 31027
17-03-17 17:58:02.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:02.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:02.988 -07 000000458 INF: FPGA: Recv ZSGSRD 31031
17-03-17 17:58:02.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:58:02.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:02.998 -07 000000561 INF: FPGA: Recv ZSGSRD 31022
17-03-17 17:58:03.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:03.008 -07 000000482 INF: FPGA: Recv ZSGSRD 31035
17-03-17 17:58:03.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:03.018 -07 000000576 INF: FPGA: Recv ZSGSRD 31032
17-03-17 17:58:03.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:03.028 -07 000000561 INF: FPGA: Recv ZSGSRD 31034
17-03-17 17:58:03.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:03.038 -07 000000476 INF: FPGA: Recv ZSGSRD 31028
17-03-17 17:58:03.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:03.048 -07 000000409 INF: FPGA: Recv ZSGSRD 31026
17-03-17 17:58:03.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:03.058 -07 000000482 INF: FPGA: Recv ZSGSRD 31035
17-03-17 17:58:03.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.068 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:03.068 -07 000000482 INF: FPGA: Recv ZPIEZORD 26834
17-03-17 17:58:03.078 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.078 -07 000000431 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.655 V. Piezo Error = -9.2 V.
17-03-17 17:58:03.078 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31030 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31030 (-138.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 31022 (-138.8 uncal um), Max = 31035 (-138.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:58:03.078 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31030, posNoise = 5, negNoise = 8
17-03-17 17:58:03.078 -07 000000431 INF: Z Motor: After move to -0.139652, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:03.078 -07 000000431 INF: Z Motor: Settle wait time = 1428 ms, measure time = 117 ms (allowed 150 ms), total time = 1545 ms
17-03-17 17:58:03.078 -07 000000431 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 17:58:03.118 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1699 ms
17-03-17 17:58:03.118 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:58:03.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:03.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:03.118 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:03.118 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:58:03.118 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:03.118 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:03.118 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:03.118 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:58:03.128 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:03.128 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:58:03.138 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:58:03.138 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:58:03.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:58:03.188 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:58:03.298 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 4.001704,
17-03-17 17:58:03.388 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:58:03.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:58:03.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:58:03.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:58:03.428 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:58:03.428 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 17:58:03.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 17:58:03.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:58:03.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:03.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:58:03.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:58:03.528 -07 000000433 INF: Autofocus start
17-03-17 17:58:03.528 -07 000000433 INF: MeasureProfile start
17-03-17 17:58:03.528 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:03.528 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:03.538 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:03.538 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:58:03.538 -07 000000433 INF: MeasureProfile done
17-03-17 17:58:03.538 -07 000000433 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:58:03.538 -07 000000433 INF: Autofocus finished
17-03-17 17:58:03.738 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:58:03.738 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:58:03.738 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.139666654769978. ----------
17-03-17 17:58:03.738 -07 000000610 INF: Cycle	7	Tile	2	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:58:03.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29031, sync = True, waitForSettling = True)
17-03-17 17:58:03.758 -07 000000610 INF: Z Motor: Moving to -0.132895 mm, started at -0.139667 mm, distance = 6.77 um
17-03-17 17:58:03.758 -07 000000610 INF: FPGA: Xmit ZDACW 29031\n [Z Motor]
17-03-17 17:58:03.758 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:58:03.768 -07 000000610 INF: FPGA: 'ZDACW 29031' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:58:03.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:03.768 -07 000000433 INF: FPGA: Recv ZDACR 29031
17-03-17 17:58:03.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:58:03.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:03.928 -07 000000458 INF: FPGA: Recv ZSGSRD 29977
17-03-17 17:58:03.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:03.938 -07 000000627 INF: FPGA: Recv ZSGSRD 29980
17-03-17 17:58:03.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:03.948 -07 000000561 INF: FPGA: Recv ZSGSRD 29974
17-03-17 17:58:03.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:03.958 -07 000000551 INF: FPGA: Recv ZSGSRD 29978
17-03-17 17:58:03.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:03.968 -07 000000593 INF: FPGA: Recv ZSGSRD 29977
17-03-17 17:58:03.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:03.978 -07 000000458 INF: FPGA: Recv ZSGSRD 29980
17-03-17 17:58:03.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:03.988 -07 000000576 INF: FPGA: Recv ZSGSRD 29977
17-03-17 17:58:03.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:03.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:03.998 -07 000000561 INF: FPGA: Recv ZSGSRD 29976
17-03-17 17:58:04.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:04.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:04.008 -07 000000409 INF: FPGA: Recv ZSGSRD 29977
17-03-17 17:58:04.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:04.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:04.018 -07 000000486 INF: FPGA: Recv ZSGSRD 29975
17-03-17 17:58:04.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:04.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:04.028 -07 000000458 INF: FPGA: Recv ZPIEZORD 25478
17-03-17 17:58:04.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:04.038 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.430 V. Piezo Error = -9.9 V.
17-03-17 17:58:04.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29977 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29977 (-132.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29974 (-132.1 uncal um), Max = 29980 (-132.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:58:04.038 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29977, posNoise = 3, negNoise = 3
17-03-17 17:58:04.038 -07 000000610 INF: Z Motor: After move to -0.132895, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:04.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:58:04.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:04.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:04.038 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:04.038 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:04.038 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:04.038 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:04.038 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:04.038 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:04.038 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 17:58:04.038 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:04.038 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-17 17:58:04.038 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:04.048 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:58:04.048 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:04.048 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:04.048 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:04.058 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:58:04.058 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:58:04.058 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:58:04.058 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:58:04.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29208 150\n [Camera]
17-03-17 17:58:04.258 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:04.648 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:58:04.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:58:04.648 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:04.648 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:58:04.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:58:04.658 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:04.658 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:04.658 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:58:04.658 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:04.658 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:58:04.838 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29208 776
17-03-17 17:58:04.988 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:58:05.028 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 17:58:05.028 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 17:58:05.028 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:05.028 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 17:58:05.028 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 17:58:05.028 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:05.028 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:58:05.038 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:58:05.038 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:58:05.038 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:58:05.178 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:58:05.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:58:05.178 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:05.178 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:58:05.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:58:05.188 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:05.188 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:05.188 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 17:58:05.188 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:05.188 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:58:05.368 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 17:58:05.368 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:58:05.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29208 150' command took 2 ms to send, 1308 ms to get response, and 1313 ms overall
17-03-17 17:58:05.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:58:05.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.132901959384703. ------
17-03-17 17:58:05.378 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:05.378 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13965 mm
17-03-17 17:58:05.378 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:58:05.378 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:05.378 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 17:58:05.378 -07 000000593 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 17:58:05.378 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30507, sync = True, waitForSettling = False)
17-03-17 17:58:05.378 -07 000000448 INF: Z Motor: Moving to -0.139652 mm, started at -0.132902 mm, distance = -6.75 um
17-03-17 17:58:05.388 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:58:05.388 -07 000000448 INF: FPGA: Xmit ZDACW 30507\n [Z Motor]
17-03-17 17:58:05.388 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:58:05.398 -07 000000448 INF: FPGA: 'ZDACW 30507' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:58:05.398 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:58:05.408 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:05.408 -07 000000623 INF: FPGA: Recv YRDPOS 124383
17-03-17 17:58:05.418 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:05.418 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 17:58:05.418 -07 000000593 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:05.418 -07 000000593 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:58:05.418 -07 000000593 INF: Y Motor: Moving 1342 steps-19
17-03-17 17:58:05.418 -07 000000576 INF: FPGA: Recv ZDACR 30507
17-03-17 17:58:05.428 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:58:05.428 -07 000000448 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 17:58:05.428 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:58:05.568 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:58:05.568 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 17:58:05.568 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:58:05.568 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:05.568 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:58:05.568 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:05.568 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:58:05.578 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:58:05.578 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:58:05.578 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:58:05.598 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:58:05.598 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 17:58:05.798 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 17:58:05.798 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 17:58:05.838 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:05.848 -07 000000627 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:58:05.848 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:58:05.848 -07 000000593 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:05.848 -07 000000593 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:58:05.848 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-17 17:58:06.548 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:58:06.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:58:06.798 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:06.798 -07 000000486 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:58:06.808 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:06.808 -07 000000593 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:06.828 -07 000000593 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:58:06.828 -07 000000593 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:58:06.828 -07 000000593 INF: Y Motor: Moved to 61.5645 after 1443 ms (table move)
17-03-17 17:58:06.828 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139652 mm (DAC = 30507)
17-03-17 17:58:06.828 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:06.828 -07 000000458 INF: FPGA: Recv ZSGSRD 31028
17-03-17 17:58:06.838 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:58:06.838 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:06.838 -07 000000627 INF: FPGA: Recv ZSGSRD 31022
17-03-17 17:58:06.848 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:06.848 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:06.848 -07 000000409 INF: FPGA: Recv ZSGSRD 31030
17-03-17 17:58:06.858 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:06.858 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:06.858 -07 000000458 INF: FPGA: Recv ZSGSRD 31028
17-03-17 17:58:06.868 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:06.868 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:06.868 -07 000000561 INF: FPGA: Recv ZSGSRD 31036
17-03-17 17:58:06.878 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:06.878 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:06.878 -07 000000459 INF: FPGA: Recv ZSGSRD 31034
17-03-17 17:58:06.888 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:06.888 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:06.888 -07 000000458 INF: FPGA: Recv ZSGSRD 31029
17-03-17 17:58:06.898 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:06.898 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:06.898 -07 000000623 INF: FPGA: Recv ZSGSRD 31022
17-03-17 17:58:06.908 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:06.908 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:06.908 -07 000000486 INF: FPGA: Recv ZSGSRD 31020
17-03-17 17:58:06.918 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:06.918 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:06.918 -07 000000501 INF: FPGA: Recv ZSGSRD 31026
17-03-17 17:58:06.928 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:06.928 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:06.928 -07 000000627 INF: FPGA: Recv ZPIEZORD 26882
17-03-17 17:58:06.938 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:06.938 -07 000000476 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.655 V. Piezo Error = -9.1 V.
17-03-17 17:58:06.938 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31028 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31028 (-138.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31020 (-138.8 uncal um), Max = 31036 (-138.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:58:06.938 -07 000000476 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31028, posNoise = 8, negNoise = 8
17-03-17 17:58:06.938 -07 000000476 INF: Z Motor: After move to -0.139652, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:06.938 -07 000000476 INF: Z Motor: Settle wait time = 1446 ms, measure time = 105 ms (allowed 150 ms), total time = 1551 ms
17-03-17 17:58:06.938 -07 000000476 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 17:58:06.988 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 17:58:06.988 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:58:06.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:06.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:06.988 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:06.988 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:58:06.988 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:06.998 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:06.998 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:58:06.998 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:06.998 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:06.998 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:58:06.998 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:58:06.998 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:58:07.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:58:07.048 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:58:07.248 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:58:07.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:58:07.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:58:07.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 17:58:07.288 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:58:07.288 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 17:58:07.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:58:07.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:58:07.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:07.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:58:07.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 17:58:07.388 -07 000000458 INF: Autofocus start
17-03-17 17:58:07.388 -07 000000458 INF: MeasureProfile start
17-03-17 17:58:07.388 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:07.388 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:07.398 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:58:07.398 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:58:07.398 -07 000000458 INF: MeasureProfile done
17-03-17 17:58:07.398 -07 000000458 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:58:07.398 -07 000000458 INF: Autofocus finished
17-03-17 17:58:07.598 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:58:07.598 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:58:07.598 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139653806345694. ----------
17-03-17 17:58:07.598 -07 000000610 INF: Cycle	7	Tile	3	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:58:07.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29002, sync = True, waitForSettling = True)
17-03-17 17:58:07.608 -07 000000610 INF: Z Motor: Moving to -0.132763 mm, started at -0.139654 mm, distance = 6.89 um
17-03-17 17:58:07.608 -07 000000610 INF: FPGA: Xmit ZDACW 29002\n [Z Motor]
17-03-17 17:58:07.608 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 17:58:07.618 -07 000000610 INF: FPGA: 'ZDACW 29002' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:58:07.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:07.618 -07 000000482 INF: FPGA: Recv ZDACR 29002
17-03-17 17:58:07.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:07.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:58:07.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:07.778 -07 000000409 INF: FPGA: Recv ZSGSRD 29957
17-03-17 17:58:07.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:07.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:07.788 -07 000000478 INF: FPGA: Recv ZSGSRD 29961
17-03-17 17:58:07.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:07.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:07.798 -07 000000433 INF: FPGA: Recv ZSGSRD 29959
17-03-17 17:58:07.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:07.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:07.808 -07 000000501 INF: FPGA: Recv ZSGSRD 29956
17-03-17 17:58:07.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:07.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:07.818 -07 000000486 INF: FPGA: Recv ZSGSRD 29957
17-03-17 17:58:07.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:07.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:07.828 -07 000000482 INF: FPGA: Recv ZSGSRD 29962
17-03-17 17:58:07.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:07.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:07.838 -07 000000627 INF: FPGA: Recv ZSGSRD 29957
17-03-17 17:58:07.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:07.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:07.848 -07 000000431 INF: FPGA: Recv ZSGSRD 29953
17-03-17 17:58:07.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:07.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:07.858 -07 000000458 INF: FPGA: Recv ZSGSRD 29958
17-03-17 17:58:07.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:07.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:07.868 -07 000000551 INF: FPGA: Recv ZSGSRD 29960
17-03-17 17:58:07.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:07.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:07.878 -07 000000482 INF: FPGA: Recv ZPIEZORD 25454
17-03-17 17:58:07.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:07.888 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.425 V. Piezo Error = -9.9 V.
17-03-17 17:58:07.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29958 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29958 (-132.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29953 (-132.0 uncal um), Max = 29962 (-132.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:58:07.888 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29958, posNoise = 4, negNoise = 5
17-03-17 17:58:07.888 -07 000000610 INF: Z Motor: After move to -0.132763, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:07.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:58:07.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:07.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:07.888 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:07.888 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:07.888 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:07.888 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:07.888 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:07.888 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:07.888 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:58:07.888 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:07.888 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:07.888 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:07.898 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:58:07.898 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:07.898 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:58:07.898 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:07.908 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:58:07.908 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:58:07.908 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 17:58:07.908 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:58:07.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29178 150\n [Camera]
17-03-17 17:58:08.118 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:08.508 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:58:08.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:58:08.508 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:08.508 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:08.508 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1049759792, 0x0, 391868352) start.
17-03-17 17:58:08.508 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:58:08.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:58:08.508 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:08.508 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:08.508 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1085182056, 0x0, 418435064) start.
17-03-17 17:58:08.668 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 4.001704,
17-03-17 17:58:08.698 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29178 776
17-03-17 17:58:08.848 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:58:08.898 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1049759792, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 17:58:08.898 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:58:08.898 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:08.898 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1085182056, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 17:58:08.898 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:58:08.898 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:08.898 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:08.898 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:58:08.908 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:08.908 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 17:58:09.038 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:58:09.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:58:09.038 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:09.038 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:09.038 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1120604320, 0x0, 391868352) start.
17-03-17 17:58:09.038 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:58:09.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:58:09.038 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:09.038 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:09.038 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:58:09.228 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 17:58:09.228 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:58:09.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29178 150' command took 2 ms to send, 1307 ms to get response, and 1316 ms overall
17-03-17 17:58:09.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:58:09.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.13277989935401. ------
17-03-17 17:58:09.348 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13910 mm
17-03-17 17:58:09.348 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:58:09.348 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:09.348 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:09.348 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 17:58:09.348 -07 000000627 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 17:58:09.348 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30387, sync = True, waitForSettling = False)
17-03-17 17:58:09.348 -07 000000448 INF: Z Motor: Moving to -0.139103 mm, started at -0.132780 mm, distance = -6.32 um
17-03-17 17:58:09.358 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:09.358 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:09.358 -07 000000478 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:58:09.368 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:58:09.368 -07 000000627 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:09.368 -07 000000627 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:58:09.368 -07 000000627 INF: Y Motor: Moving 1341 steps-17
17-03-17 17:58:09.368 -07 000000448 INF: FPGA: Xmit ZDACW 30387\n [Z Motor]
17-03-17 17:58:09.368 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 17:58:09.378 -07 000000448 INF: FPGA: 'ZDACW 30387' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:58:09.378 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:58:09.388 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:58:09.398 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:09.398 -07 000000458 INF: FPGA: Recv ZDACR 30387
17-03-17 17:58:09.408 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:58:09.408 -07 000000448 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 17:58:09.438 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1120604320, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 17:58:09.438 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 17:58:09.438 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:09.438 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 17:58:09.438 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:58:09.438 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:09.438 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:09.438 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:58:09.438 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 17:58:09.448 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 17:58:09.578 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:58:09.578 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 17:58:09.758 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 17:58:09.758 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:58:09.788 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:09.798 -07 000000433 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:58:09.798 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:58:09.798 -07 000000627 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:09.798 -07 000000627 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:58:09.798 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 17:58:10.748 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:10.748 -07 000000458 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:58:10.758 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:10.758 -07 000000627 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:10.768 -07 000000627 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:58:10.768 -07 000000627 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:58:10.768 -07 000000627 INF: Y Motor: Moved to 62.3960 after 1421 ms (table move)
17-03-17 17:58:10.778 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139103 mm (DAC = 30387)
17-03-17 17:58:10.778 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:10.778 -07 000000561 INF: FPGA: Recv ZSGSRD 30944
17-03-17 17:58:10.788 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:10.788 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:10.788 -07 000000458 INF: FPGA: Recv ZSGSRD 30940
17-03-17 17:58:10.798 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:10.798 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:10.798 -07 000000486 INF: FPGA: Recv ZSGSRD 30941
17-03-17 17:58:10.808 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:10.808 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:10.808 -07 000000448 INF: FPGA: Recv ZSGSRD 30944
17-03-17 17:58:10.818 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:10.818 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:10.818 -07 000000561 INF: FPGA: Recv ZSGSRD 30948
17-03-17 17:58:10.828 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:10.828 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:10.828 -07 000000478 INF: FPGA: Recv ZSGSRD 30952
17-03-17 17:58:10.838 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:10.838 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:10.838 -07 000000486 INF: FPGA: Recv ZSGSRD 30938
17-03-17 17:58:10.848 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:10.848 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:10.848 -07 000000623 INF: FPGA: Recv ZSGSRD 30935
17-03-17 17:58:10.858 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:10.858 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:10.858 -07 000000627 INF: FPGA: Recv ZSGSRD 30945
17-03-17 17:58:10.868 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:10.868 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:10.868 -07 000000593 INF: FPGA: Recv ZSGSRD 30941
17-03-17 17:58:10.878 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:10.878 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:10.878 -07 000000551 INF: FPGA: Recv ZPIEZORD 26769
17-03-17 17:58:10.888 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:10.888 -07 000000576 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.637 V. Piezo Error = -9.2 V.
17-03-17 17:58:10.888 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30943 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30942 (-138.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30935 (-138.3 uncal um), Max = 30952 (-138.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:58:10.888 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30943, posNoise = 9, negNoise = 8
17-03-17 17:58:10.888 -07 000000576 INF: Z Motor: After move to -0.139103, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:10.888 -07 000000576 INF: Z Motor: Settle wait time = 1426 ms, measure time = 107 ms (allowed 150 ms), total time = 1533 ms
17-03-17 17:58:10.888 -07 000000576 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:58:10.938 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 17:58:10.938 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:58:10.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:10.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:10.938 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:10.938 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:10.938 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:58:10.938 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:10.938 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:10.938 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:58:10.948 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:58:10.948 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:58:10.958 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:58:10.958 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:58:10.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:58:11.008 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:58:11.208 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:58:11.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:58:11.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:58:11.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:58:11.248 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:58:11.248 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 17:58:11.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 17:58:11.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:58:11.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:11.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:58:11.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:58:11.348 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:11.348 -07 000000627 INF: Autofocus start
17-03-17 17:58:11.348 -07 000000627 INF: MeasureProfile start
17-03-17 17:58:11.348 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:11.358 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:58:11.358 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:58:11.358 -07 000000627 INF: MeasureProfile done
17-03-17 17:58:11.358 -07 000000627 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:58:11.358 -07 000000627 INF: Autofocus finished
17-03-17 17:58:11.548 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:58:11.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:58:11.558 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:58:11.558 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 17:58:11.558 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.139107748313644. ----------
17-03-17 17:58:11.568 -07 000000610 INF: Cycle	7	Tile	4	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:58:11.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28894, sync = True, waitForSettling = True)
17-03-17 17:58:11.568 -07 000000610 INF: Z Motor: Moving to -0.132268 mm, started at -0.139108 mm, distance = 6.84 um
17-03-17 17:58:11.568 -07 000000610 INF: FPGA: Xmit ZDACW 28894\n [Z Motor]
17-03-17 17:58:11.568 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 17:58:11.578 -07 000000610 INF: FPGA: 'ZDACW 28894' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:58:11.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:11.578 -07 000000433 INF: FPGA: Recv ZDACR 28894
17-03-17 17:58:11.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:11.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:58:11.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:11.738 -07 000000431 INF: FPGA: Recv ZSGSRD 29883
17-03-17 17:58:11.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:11.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:11.748 -07 000000448 INF: FPGA: Recv ZSGSRD 29883
17-03-17 17:58:11.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:11.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:11.758 -07 000000476 INF: FPGA: Recv ZSGSRD 29876
17-03-17 17:58:11.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:11.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:11.768 -07 000000627 INF: FPGA: Recv ZSGSRD 29878
17-03-17 17:58:11.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:11.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:11.778 -07 000000501 INF: FPGA: Recv ZSGSRD 29881
17-03-17 17:58:11.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:11.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:11.788 -07 000000459 INF: FPGA: Recv ZSGSRD 29882
17-03-17 17:58:11.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:11.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:11.798 -07 000000480 INF: FPGA: Recv ZSGSRD 29875
17-03-17 17:58:11.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:11.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:11.808 -07 000000476 INF: FPGA: Recv ZSGSRD 29876
17-03-17 17:58:11.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:11.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:11.818 -07 000000627 INF: FPGA: Recv ZSGSRD 29882
17-03-17 17:58:11.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:11.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:11.828 -07 000000501 INF: FPGA: Recv ZSGSRD 29880
17-03-17 17:58:11.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:11.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:11.838 -07 000000459 INF: FPGA: Recv ZPIEZORD 25400
17-03-17 17:58:11.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:11.848 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.8 V.
17-03-17 17:58:11.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29880 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29880 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29875 (-131.5 uncal um), Max = 29883 (-131.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:58:11.848 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29880, posNoise = 3, negNoise = 5
17-03-17 17:58:11.848 -07 000000610 INF: Z Motor: After move to -0.132268, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:11.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:58:11.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:11.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:11.848 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:11.848 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:11.848 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:11.848 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:11.848 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:11.848 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:11.848 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:11.848 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:11.848 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:58:11.848 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:11.858 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:58:11.858 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:11.858 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:58:11.858 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:11.868 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:58:11.868 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:58:11.868 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:58:11.868 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:58:11.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29071 150\n [Camera]
17-03-17 17:58:12.068 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:12.458 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 17:58:12.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 17:58:12.458 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:12.458 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 17:58:12.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 17:58:12.468 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:12.468 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:12.468 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:58:12.468 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:12.468 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:58:12.648 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29071 776
17-03-17 17:58:12.798 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:58:12.848 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:58:12.848 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:58:12.848 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:12.848 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:58:12.848 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:58:12.848 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:12.848 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:58:12.848 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:58:12.848 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:58:12.858 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:58:12.988 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:58:12.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:58:12.988 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:12.988 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:58:12.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:58:12.998 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:12.998 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:12.998 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 17:58:12.998 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:12.998 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:58:13.178 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:58:13.178 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:58:13.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29071 150' command took 2 ms to send, 1308 ms to get response, and 1313 ms overall
17-03-17 17:58:13.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:58:13.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.132278810806952. ------
17-03-17 17:58:13.188 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13899 mm
17-03-17 17:58:13.188 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:58:13.188 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:13.308 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:13.308 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30362, sync = True, waitForSettling = False)
17-03-17 17:58:13.308 -07 000000478 INF: Z Motor: Moving to -0.138988 mm, started at -0.132279 mm, distance = -6.71 um
17-03-17 17:58:13.308 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 17:58:13.308 -07 000000576 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 17:58:13.318 -07 000000478 INF: FPGA: Xmit ZDACW 30362\n [Z Motor]
17-03-17 17:58:13.318 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 120 ms to send, 0 ms to get response, and 125 ms overall
17-03-17 17:58:13.318 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:58:13.328 -07 000000478 INF: FPGA: 'ZDACW 30362' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:58:13.328 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:58:13.338 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:13.338 -07 000000501 INF: FPGA: Recv YRDPOS 127788
17-03-17 17:58:13.348 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 17:58:13.348 -07 000000576 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:13.348 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:13.348 -07 000000576 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:58:13.348 -07 000000576 INF: Y Motor: Moving 1338 steps-14
17-03-17 17:58:13.348 -07 000000409 INF: FPGA: Recv ZDACR 30362
17-03-17 17:58:13.358 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:58:13.358 -07 000000478 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 17:58:13.358 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:58:13.378 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:58:13.378 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:58:13.378 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:13.388 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 17:58:13.388 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:58:13.388 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:13.388 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:13.388 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:13.388 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:58:13.388 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:58:13.528 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:58:13.528 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 17:58:13.738 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 17:58:13.738 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 386 ms overall
17-03-17 17:58:13.768 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:13.768 -07 000000593 INF: FPGA: Recv YRDPOS 129485
17-03-17 17:58:13.778 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:58:13.778 -07 000000576 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:13.778 -07 000000576 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 17:58:13.778 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.162 mm/sec
17-03-17 17:58:14.048 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.999021,
17-03-17 17:58:14.728 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:14.728 -07 000000409 INF: FPGA: Recv YRDPOS 129485
17-03-17 17:58:14.738 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:14.738 -07 000000576 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:14.758 -07 000000576 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:58:14.758 -07 000000576 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:58:14.758 -07 000000576 INF: Y Motor: Moved to 63.2251 after 1442 ms (table move)
17-03-17 17:58:14.758 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138988 mm (DAC = 30362)
17-03-17 17:58:14.758 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:14.758 -07 000000501 INF: FPGA: Recv ZSGSRD 30929
17-03-17 17:58:14.768 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:58:14.768 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:14.768 -07 000000409 INF: FPGA: Recv ZSGSRD 30937
17-03-17 17:58:14.778 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:14.778 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:14.778 -07 000000478 INF: FPGA: Recv ZSGSRD 30937
17-03-17 17:58:14.788 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:14.788 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:14.788 -07 000000561 INF: FPGA: Recv ZSGSRD 30935
17-03-17 17:58:14.798 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:14.798 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:14.798 -07 000000409 INF: FPGA: Recv ZSGSRD 30927
17-03-17 17:58:14.808 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:14.808 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:14.808 -07 000000478 INF: FPGA: Recv ZSGSRD 30925
17-03-17 17:58:14.818 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:14.818 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:14.818 -07 000000431 INF: FPGA: Recv ZSGSRD 30926
17-03-17 17:58:14.828 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:14.828 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:14.828 -07 000000476 INF: FPGA: Recv ZSGSRD 30918
17-03-17 17:58:14.838 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:14.838 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:14.838 -07 000000458 INF: FPGA: Recv ZSGSRD 30932
17-03-17 17:58:14.848 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:14.848 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:14.848 -07 000000409 INF: FPGA: Recv ZSGSRD 30929
17-03-17 17:58:14.858 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:14.858 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:14.858 -07 000000501 INF: FPGA: Recv ZPIEZORD 26800
17-03-17 17:58:14.868 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:14.868 -07 000000480 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.633 V. Piezo Error = -9.1 V.
17-03-17 17:58:14.868 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30930 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30929 (-138.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30918 (-138.1 uncal um), Max = 30937 (-138.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 17:58:14.868 -07 000000480 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30930, posNoise = 7, negNoise = 12
17-03-17 17:58:14.868 -07 000000480 INF: Z Motor: After move to -0.138988, error = -0.000036, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:14.868 -07 000000480 INF: Z Motor: Settle wait time = 1446 ms, measure time = 105 ms (allowed 150 ms), total time = 1551 ms
17-03-17 17:58:14.868 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 17:58:14.918 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-17 17:58:14.918 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:58:14.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:14.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:14.918 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:14.918 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:14.918 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:58:14.918 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:14.918 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:58:14.918 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:58:14.928 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:14.928 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:58:14.928 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:58:14.928 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:58:14.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:58:14.978 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:58:15.178 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:58:15.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:58:15.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:58:15.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:58:15.218 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:58:15.218 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 17:58:15.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 17:58:15.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:58:15.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:15.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:58:15.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:58:15.318 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:15.318 -07 000000593 INF: Autofocus start
17-03-17 17:58:15.318 -07 000000593 INF: MeasureProfile start
17-03-17 17:58:15.328 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:15.328 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 17:58:15.328 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:58:15.328 -07 000000593 INF: MeasureProfile done
17-03-17 17:58:15.328 -07 000000593 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:58:15.338 -07 000000593 INF: Autofocus finished
17-03-17 17:58:15.528 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:58:15.528 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:58:15.538 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.139024233555801. ----------
17-03-17 17:58:15.538 -07 000000610 INF: Cycle	7	Tile	5	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:58:15.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28886, sync = True, waitForSettling = True)
17-03-17 17:58:15.538 -07 000000610 INF: Z Motor: Moving to -0.132232 mm, started at -0.139024 mm, distance = 6.79 um
17-03-17 17:58:15.538 -07 000000610 INF: FPGA: Xmit ZDACW 28886\n [Z Motor]
17-03-17 17:58:15.538 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 17:58:15.548 -07 000000610 INF: FPGA: 'ZDACW 28886' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:58:15.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:15.548 -07 000000409 INF: FPGA: Recv ZDACR 28886
17-03-17 17:58:15.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:15.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:58:15.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:15.708 -07 000000593 INF: FPGA: Recv ZSGSRD 29877
17-03-17 17:58:15.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:15.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:15.718 -07 000000431 INF: FPGA: Recv ZSGSRD 29881
17-03-17 17:58:15.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:15.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:15.728 -07 000000476 INF: FPGA: Recv ZSGSRD 29874
17-03-17 17:58:15.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:15.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:15.738 -07 000000576 INF: FPGA: Recv ZSGSRD 29867
17-03-17 17:58:15.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:15.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:15.748 -07 000000459 INF: FPGA: Recv ZSGSRD 29873
17-03-17 17:58:15.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:58:15.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:15.758 -07 000000431 INF: FPGA: Recv ZSGSRD 29868
17-03-17 17:58:15.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:15.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:15.768 -07 000000476 INF: FPGA: Recv ZSGSRD 29870
17-03-17 17:58:15.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:15.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:15.778 -07 000000551 INF: FPGA: Recv ZSGSRD 29873
17-03-17 17:58:15.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:15.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:15.788 -07 000000486 INF: FPGA: Recv ZSGSRD 29878
17-03-17 17:58:15.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:15.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:15.798 -07 000000459 INF: FPGA: Recv ZSGSRD 29875
17-03-17 17:58:15.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:15.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:15.808 -07 000000431 INF: FPGA: Recv ZPIEZORD 25426
17-03-17 17:58:15.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:15.818 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.8 V.
17-03-17 17:58:15.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29874 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29874 (-131.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29867 (-131.4 uncal um), Max = 29881 (-131.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:58:15.818 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29874, posNoise = 7, negNoise = 7
17-03-17 17:58:15.818 -07 000000610 INF: Z Motor: After move to -0.132232, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:15.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:58:15.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:15.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:15.818 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:15.818 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:15.818 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:15.818 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:15.818 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:15.818 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:15.818 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:58:15.818 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:15.818 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:58:15.818 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:15.828 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:58:15.828 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:15.828 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 17:58:15.828 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:15.828 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:58:15.828 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:58:15.838 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:58:15.838 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:58:15.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29063 150\n [Camera]
17-03-17 17:58:16.038 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:16.428 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:58:16.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:58:16.428 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:16.428 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:58:16.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:58:16.438 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:16.438 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:16.438 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:58:16.438 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:16.438 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:58:16.548 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:58:16.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:58:16.628 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29063 776
17-03-17 17:58:16.768 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:58:16.808 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 17:58:16.808 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 17:58:16.808 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:16.808 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:58:16.808 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:58:16.808 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:16.808 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:16.808 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:16.808 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:58:16.818 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:58:16.958 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 17:58:16.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 17:58:16.958 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:16.968 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:16.968 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 17:58:16.968 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 17:58:16.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 17:58:16.968 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:16.968 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:16.968 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 17:58:17.148 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 17:58:17.148 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:58:17.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29063 150' command took 2 ms to send, 1309 ms to get response, and 1313 ms overall
17-03-17 17:58:17.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:58:17.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.132240265534102. ------
17-03-17 17:58:17.158 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:17.158 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13839 mm
17-03-17 17:58:17.158 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:58:17.158 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 17:58:17.158 -07 000000480 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 17:58:17.158 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:17.158 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30231, sync = True, waitForSettling = False)
17-03-17 17:58:17.158 -07 000000433 INF: Z Motor: Moving to -0.138389 mm, started at -0.132240 mm, distance = -6.15 um
17-03-17 17:58:17.168 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:58:17.168 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:17.168 -07 000000576 INF: FPGA: Recv YRDPOS 129485
17-03-17 17:58:17.178 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:58:17.178 -07 000000480 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:17.178 -07 000000480 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:58:17.178 -07 000000480 INF: Y Motor: Moving 1340 steps-15
17-03-17 17:58:17.178 -07 000000433 INF: FPGA: Xmit ZDACW 30231\n [Z Motor]
17-03-17 17:58:17.178 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 17:58:17.188 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:58:17.188 -07 000000433 INF: FPGA: 'ZDACW 30231' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 17:58:17.198 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:58:17.208 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:17.208 -07 000000576 INF: FPGA: Recv ZDACR 30231
17-03-17 17:58:17.218 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:58:17.218 -07 000000433 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 17:58:17.348 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 17:58:17.348 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 17:58:17.348 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:17.348 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 17:58:17.348 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:58:17.348 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:17.348 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:17.358 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:17.358 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:58:17.358 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:58:17.388 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:58:17.388 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:58:17.568 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 17:58:17.568 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:58:17.608 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:17.608 -07 000000561 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:58:17.618 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:58:17.618 -07 000000480 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:17.618 -07 000000480 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 17:58:17.618 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 17:58:18.568 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:18.568 -07 000000627 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:58:18.578 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:18.578 -07 000000480 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:18.598 -07 000000480 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:58:18.598 -07 000000480 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:58:18.598 -07 000000480 INF: Y Motor: Moved to 64.0576 after 1431 ms (table move)
17-03-17 17:58:18.598 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138389 mm (DAC = 30231)
17-03-17 17:58:18.598 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:18.598 -07 000000482 INF: FPGA: Recv ZSGSRD 30825
17-03-17 17:58:18.608 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:58:18.608 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:18.608 -07 000000551 INF: FPGA: Recv ZSGSRD 30829
17-03-17 17:58:18.618 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:18.618 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:18.618 -07 000000448 INF: FPGA: Recv ZSGSRD 30839
17-03-17 17:58:18.628 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:18.628 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:18.628 -07 000000627 INF: FPGA: Recv ZSGSRD 30838
17-03-17 17:58:18.638 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:18.638 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:18.638 -07 000000486 INF: FPGA: Recv ZSGSRD 30834
17-03-17 17:58:18.648 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:18.648 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:18.648 -07 000000501 INF: FPGA: Recv ZSGSRD 30831
17-03-17 17:58:18.658 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:18.658 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:18.658 -07 000000409 INF: FPGA: Recv ZSGSRD 30831
17-03-17 17:58:18.668 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:18.668 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:18.668 -07 000000627 INF: FPGA: Recv ZSGSRD 30827
17-03-17 17:58:18.678 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:18.678 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:18.678 -07 000000561 INF: FPGA: Recv ZSGSRD 30828
17-03-17 17:58:18.688 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:18.688 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:18.688 -07 000000458 INF: FPGA: Recv ZSGSRD 30831
17-03-17 17:58:18.698 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:18.698 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:18.698 -07 000000576 INF: FPGA: Recv ZPIEZORD 26702
17-03-17 17:58:18.708 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:18.708 -07 000000459 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.613 V. Piezo Error = -9.1 V.
17-03-17 17:58:18.708 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30831 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30831 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30825 (-137.6 uncal um), Max = 30839 (-137.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:58:18.708 -07 000000459 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30831, posNoise = 8, negNoise = 6
17-03-17 17:58:18.708 -07 000000459 INF: Z Motor: After move to -0.138389, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:18.708 -07 000000459 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 17:58:18.708 -07 000000459 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 17:58:18.758 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 17:58:18.758 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:58:18.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:18.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:18.758 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:18.758 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:18.758 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:58:18.758 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:18.768 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:58:18.768 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:58:18.768 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:18.768 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:58:18.778 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:58:18.778 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:58:18.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:58:18.828 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:58:19.018 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:58:19.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:58:19.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:58:19.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-17 17:58:19.058 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:58:19.058 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:58:19.058 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 17:58:19.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:58:19.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:19.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:58:19.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:58:19.158 -07 000000459 INF: Autofocus start
17-03-17 17:58:19.158 -07 000000459 INF: MeasureProfile start
17-03-17 17:58:19.158 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:19.158 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:19.168 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:19.168 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:58:19.178 -07 000000459 INF: MeasureProfile done
17-03-17 17:58:19.178 -07 000000459 INF: X=80  Z correction [um]=0.3608828
17-03-17 17:58:19.178 -07 000000459 INF: Autofocus finished
17-03-17 17:58:19.368 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:58:19.368 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:58:19.368 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138388236553767. ----------
17-03-17 17:58:19.368 -07 000000610 INF: Cycle	7	Tile	6	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:58:19.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28822, sync = True, waitForSettling = True)
17-03-17 17:58:19.378 -07 000000610 INF: Z Motor: Moving to -0.131939 mm, started at -0.138388 mm, distance = 6.45 um
17-03-17 17:58:19.378 -07 000000610 INF: FPGA: Xmit ZDACW 28822\n [Z Motor]
17-03-17 17:58:19.378 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:58:19.388 -07 000000610 INF: FPGA: 'ZDACW 28822' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:58:19.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:19.388 -07 000000458 INF: FPGA: Recv ZDACR 28822
17-03-17 17:58:19.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:19.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:58:19.408 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.99219,
17-03-17 17:58:19.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:19.548 -07 000000623 INF: FPGA: Recv ZSGSRD 29834
17-03-17 17:58:19.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:19.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:19.558 -07 000000448 INF: FPGA: Recv ZSGSRD 29823
17-03-17 17:58:19.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:19.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:19.568 -07 000000458 INF: FPGA: Recv ZSGSRD 29830
17-03-17 17:58:19.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:19.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:19.578 -07 000000551 INF: FPGA: Recv ZSGSRD 29829
17-03-17 17:58:19.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:19.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:19.588 -07 000000431 INF: FPGA: Recv ZSGSRD 29823
17-03-17 17:58:19.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:19.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:19.598 -07 000000433 INF: FPGA: Recv ZSGSRD 29831
17-03-17 17:58:19.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:19.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:19.608 -07 000000448 INF: FPGA: Recv ZSGSRD 29823
17-03-17 17:58:19.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:19.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:19.618 -07 000000482 INF: FPGA: Recv ZSGSRD 29831
17-03-17 17:58:19.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:19.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:19.628 -07 000000476 INF: FPGA: Recv ZSGSRD 29830
17-03-17 17:58:19.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:19.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:19.638 -07 000000551 INF: FPGA: Recv ZSGSRD 29825
17-03-17 17:58:19.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:19.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:19.648 -07 000000482 INF: FPGA: Recv ZPIEZORD 25361
17-03-17 17:58:19.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:19.658 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.8 V.
17-03-17 17:58:19.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29828 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29830 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29823 (-131.1 uncal um), Max = 29834 (-131.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:58:19.658 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29828, posNoise = 6, negNoise = 5
17-03-17 17:58:19.658 -07 000000610 INF: Z Motor: After move to -0.131939, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:19.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:58:19.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:19.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:19.658 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:19.658 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:19.658 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:19.658 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:19.658 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:19.658 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:19.658 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:58:19.658 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:19.658 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:19.658 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:19.658 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:19.658 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:19.668 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:58:19.668 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:19.668 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:58:19.668 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:58:19.668 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:58:19.668 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:58:19.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28999 150\n [Camera]
17-03-17 17:58:19.878 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:20.268 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:58:20.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:58:20.268 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:20.268 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:20.268 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-17 17:58:20.268 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:58:20.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:58:20.268 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:20.268 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:20.268 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1049759792, 0x0, 418435064) start.
17-03-17 17:58:20.458 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28999 777
17-03-17 17:58:20.608 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:58:20.648 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1049759792, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:58:20.648 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:58:20.648 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:58:20.648 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:20.648 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:58:20.648 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:20.648 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:58:20.648 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:58:20.648 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:58:20.658 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:58:20.798 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:58:20.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:58:20.798 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:20.798 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:20.798 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1085182056, 0x0, 391868352) start.
17-03-17 17:58:20.798 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:58:20.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:58:20.798 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:20.798 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:20.808 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1137479384, 0x0, 418435064) start.
17-03-17 17:58:20.988 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 17:58:20.988 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:58:20.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28999 150' command took 2 ms to send, 1308 ms to get response, and 1313 ms overall
17-03-17 17:58:20.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:58:20.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.131944751775581. ------
17-03-17 17:58:21.128 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:21.128 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13841 mm
17-03-17 17:58:21.128 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:58:21.138 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:21.138 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:58:21.138 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:58:21.138 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 17:58:21.138 -07 000000576 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 17:58:21.138 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30236, sync = True, waitForSettling = False)
17-03-17 17:58:21.138 -07 000000593 INF: Z Motor: Moving to -0.138412 mm, started at -0.131945 mm, distance = -6.47 um
17-03-17 17:58:21.148 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:21.148 -07 000000448 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:58:21.158 -07 000000593 INF: FPGA: Xmit ZDACW 30236\n [Z Motor]
17-03-17 17:58:21.158 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 17:58:21.158 -07 000000576 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:21.158 -07 000000576 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:58:21.158 -07 000000576 INF: Y Motor: Moving 1336 steps-10
17-03-17 17:58:21.158 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:58:21.168 -07 000000593 INF: FPGA: 'ZDACW 30236' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 17:58:21.168 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:21.168 -07 000000458 INF: FPGA: Recv ZDACR 30236
17-03-17 17:58:21.178 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:58:21.178 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:21.178 -07 000000593 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 17:58:21.188 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1137479384, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 17:58:21.188 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:58:21.188 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:21.198 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:21.198 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1085182056, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 17:58:21.198 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:58:21.198 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:21.208 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:58:21.208 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:58:21.208 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 17:58:21.338 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:58:21.338 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:58:21.548 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:58:21.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:58:21.548 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 17:58:21.548 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:58:21.578 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:21.588 -07 000000448 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:58:21.588 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:58:21.588 -07 000000576 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:21.588 -07 000000576 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:58:21.588 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.103 mm/sec
17-03-17 17:58:22.538 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:22.538 -07 000000409 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:58:22.548 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:22.548 -07 000000576 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:22.568 -07 000000576 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:58:22.568 -07 000000576 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:58:22.568 -07 000000576 INF: Y Motor: Moved to 64.8794 after 1430 ms (table move)
17-03-17 17:58:22.568 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138412 mm (DAC = 30236)
17-03-17 17:58:22.568 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:22.568 -07 000000458 INF: FPGA: Recv ZSGSRD 30843
17-03-17 17:58:22.578 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:58:22.578 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:22.578 -07 000000482 INF: FPGA: Recv ZSGSRD 30832
17-03-17 17:58:22.588 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:22.588 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:22.588 -07 000000480 INF: FPGA: Recv ZSGSRD 30831
17-03-17 17:58:22.598 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:22.598 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:22.598 -07 000000486 INF: FPGA: Recv ZSGSRD 30837
17-03-17 17:58:22.608 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:22.608 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:22.608 -07 000000593 INF: FPGA: Recv ZSGSRD 30836
17-03-17 17:58:22.618 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:22.618 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:22.618 -07 000000409 INF: FPGA: Recv ZSGSRD 30845
17-03-17 17:58:22.628 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:22.628 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:22.628 -07 000000458 INF: FPGA: Recv ZSGSRD 30841
17-03-17 17:58:22.638 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:22.638 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:22.638 -07 000000431 INF: FPGA: Recv ZSGSRD 30834
17-03-17 17:58:22.648 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:22.648 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:22.648 -07 000000482 INF: FPGA: Recv ZSGSRD 30834
17-03-17 17:58:22.658 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:22.658 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:22.658 -07 000000459 INF: FPGA: Recv ZSGSRD 30834
17-03-17 17:58:22.668 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:22.668 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:22.668 -07 000000551 INF: FPGA: Recv ZPIEZORD 26735
17-03-17 17:58:22.678 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:22.678 -07 000000476 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.614 V. Piezo Error = -9.0 V.
17-03-17 17:58:22.678 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30837 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30835 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30831 (-137.6 uncal um), Max = 30845 (-137.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:58:22.678 -07 000000476 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30837, posNoise = 8, negNoise = 6
17-03-17 17:58:22.678 -07 000000476 INF: Z Motor: After move to -0.138412, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:22.678 -07 000000476 INF: Z Motor: Settle wait time = 1433 ms, measure time = 105 ms (allowed 150 ms), total time = 1538 ms
17-03-17 17:58:22.678 -07 000000476 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 17:58:22.728 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 17:58:22.728 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:58:22.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:22.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:22.728 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:22.728 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:58:22.728 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:22.728 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:22.728 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:58:22.728 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:58:22.738 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:22.738 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:58:22.738 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:58:22.738 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:58:22.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:58:22.788 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:58:22.988 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:58:22.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:58:22.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:58:22.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:58:23.028 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:58:23.028 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 17:58:23.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:58:23.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:58:23.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:23.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:58:23.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:58:23.128 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:23.128 -07 000000458 INF: Autofocus start
17-03-17 17:58:23.128 -07 000000458 INF: MeasureProfile start
17-03-17 17:58:23.128 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:23.138 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:23.138 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:58:23.138 -07 000000458 INF: MeasureProfile done
17-03-17 17:58:23.138 -07 000000458 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:58:23.138 -07 000000458 INF: Autofocus finished
17-03-17 17:58:23.338 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:58:23.338 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 17:58:23.338 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138426781826618. ----------
17-03-17 17:58:23.348 -07 000000610 INF: Cycle	7	Tile	7	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:58:23.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28760, sync = True, waitForSettling = True)
17-03-17 17:58:23.348 -07 000000610 INF: Z Motor: Moving to -0.131655 mm, started at -0.138427 mm, distance = 6.77 um
17-03-17 17:58:23.348 -07 000000610 INF: FPGA: Xmit ZDACW 28760\n [Z Motor]
17-03-17 17:58:23.348 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:58:23.358 -07 000000610 INF: FPGA: 'ZDACW 28760' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:58:23.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:23.358 -07 000000593 INF: FPGA: Recv ZDACR 28760
17-03-17 17:58:23.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:23.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:58:23.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:23.518 -07 000000482 INF: FPGA: Recv ZSGSRD 29788
17-03-17 17:58:23.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:23.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:23.528 -07 000000486 INF: FPGA: Recv ZSGSRD 29782
17-03-17 17:58:23.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:23.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:23.538 -07 000000431 INF: FPGA: Recv ZSGSRD 29780
17-03-17 17:58:23.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:23.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:23.548 -07 000000501 INF: FPGA: Recv ZSGSRD 29784
17-03-17 17:58:23.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:23.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:23.558 -07 000000458 INF: FPGA: Recv ZSGSRD 29787
17-03-17 17:58:23.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:23.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:23.568 -07 000000482 INF: FPGA: Recv ZSGSRD 29789
17-03-17 17:58:23.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:23.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:23.578 -07 000000486 INF: FPGA: Recv ZSGSRD 29775
17-03-17 17:58:23.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:23.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:23.588 -07 000000431 INF: FPGA: Recv ZSGSRD 29786
17-03-17 17:58:23.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:23.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:23.598 -07 000000448 INF: FPGA: Recv ZSGSRD 29784
17-03-17 17:58:23.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:23.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:23.608 -07 000000482 INF: FPGA: Recv ZSGSRD 29781
17-03-17 17:58:23.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:23.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:23.618 -07 000000576 INF: FPGA: Recv ZPIEZORD 25330
17-03-17 17:58:23.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:23.628 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -9.8 V.
17-03-17 17:58:23.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29784 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29784 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29775 (-130.8 uncal um), Max = 29789 (-130.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:58:23.628 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29784, posNoise = 5, negNoise = 9
17-03-17 17:58:23.628 -07 000000610 INF: Z Motor: After move to -0.131655, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:23.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:58:23.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:23.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:23.628 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:23.628 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:23.628 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:23.628 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:23.628 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:23.628 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:23.628 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:58:23.628 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:23.628 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:58:23.628 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:23.628 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:58:23.628 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:23.638 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:58:23.638 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:23.638 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:58:23.638 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:58:23.638 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:58:23.648 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:58:23.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28937 150\n [Camera]
17-03-17 17:58:23.848 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:24.238 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:58:24.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:58:24.238 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:24.238 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:58:24.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:58:24.238 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:24.248 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:24.248 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:58:24.248 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:24.248 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:58:24.428 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28937 776
17-03-17 17:58:24.578 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:58:24.618 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:58:24.618 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:58:24.618 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:24.618 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:58:24.618 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:58:24.618 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:24.628 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:58:24.628 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:58:24.628 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:58:24.628 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:58:24.768 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:58:24.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:58:24.768 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:24.778 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:58:24.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:58:24.778 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 4.000345,
17-03-17 17:58:24.778 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:24.778 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:24.778 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 17:58:24.788 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:24.788 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1049759792, 0x0, 418435064) start.
17-03-17 17:58:24.968 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 17:58:24.968 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:58:24.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28937 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-17 17:58:25.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:58:25.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131662086441343. ------
17-03-17 17:58:25.088 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13819 mm
17-03-17 17:58:25.088 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:58:25.098 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30187, sync = True, waitForSettling = False)
17-03-17 17:58:25.098 -07 000000448 INF: Z Motor: Moving to -0.138187 mm, started at -0.131662 mm, distance = -6.53 um
17-03-17 17:58:25.098 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 17:58:25.098 -07 000000623 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 17:58:25.108 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:25.108 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:25.118 -07 000000448 INF: FPGA: Xmit ZDACW 30187\n [Z Motor]
17-03-17 17:58:25.118 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:58:25.118 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 17:58:25.128 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:25.128 -07 000000448 INF: FPGA: 'ZDACW 30187' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 17:58:25.128 -07 000000561 INF: FPGA: Recv YRDPOS 132874
17-03-17 17:58:25.138 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-17 17:58:25.138 -07 000000623 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:25.138 -07 000000623 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:58:25.138 -07 000000623 INF: Y Motor: Moving 1348 steps-27
17-03-17 17:58:25.148 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:58:25.158 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:25.158 -07 000000576 INF: FPGA: Recv ZDACR 30187
17-03-17 17:58:25.158 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:58:25.158 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:58:25.158 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:25.168 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:58:25.168 -07 000000448 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 17:58:25.168 -07 000000448 INF: Z Motor: MoveAbsStepped took 67 ms (did NOT wait for settling yet))
17-03-17 17:58:25.168 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:25.168 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:58:25.168 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1049759792, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 17:58:25.178 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:58:25.178 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:25.178 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:25.188 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 17:58:25.348 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:58:25.348 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 17:58:25.538 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 17:58:25.538 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 404 ms overall
17-03-17 17:58:25.578 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:25.578 -07 000000476 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:58:25.588 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:58:25.588 -07 000000623 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:25.588 -07 000000623 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 17:58:25.588 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.843 mm, average velocity = 2.087 mm/sec
17-03-17 17:58:26.538 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:26.538 -07 000000576 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:58:26.548 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:26.548 -07 000000623 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:26.548 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:58:26.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:58:26.568 -07 000000623 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:58:26.568 -07 000000623 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:58:26.568 -07 000000623 INF: Y Motor: Moved to 65.7148 after 1468 ms (table move)
17-03-17 17:58:26.568 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138187 mm (DAC = 30187)
17-03-17 17:58:26.568 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:26.568 -07 000000409 INF: FPGA: Recv ZSGSRD 30805
17-03-17 17:58:26.578 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:58:26.578 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:26.578 -07 000000433 INF: FPGA: Recv ZSGSRD 30796
17-03-17 17:58:26.588 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:26.588 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:26.588 -07 000000482 INF: FPGA: Recv ZSGSRD 30803
17-03-17 17:58:26.598 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:26.598 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:26.598 -07 000000501 INF: FPGA: Recv ZSGSRD 30802
17-03-17 17:58:26.608 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:26.608 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:26.608 -07 000000458 INF: FPGA: Recv ZSGSRD 30805
17-03-17 17:58:26.618 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:26.618 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:26.618 -07 000000431 INF: FPGA: Recv ZSGSRD 30805
17-03-17 17:58:26.628 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:26.628 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:26.628 -07 000000561 INF: FPGA: Recv ZSGSRD 30804
17-03-17 17:58:26.638 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:26.638 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:26.638 -07 000000459 INF: FPGA: Recv ZSGSRD 30799
17-03-17 17:58:26.648 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:26.648 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:26.648 -07 000000623 INF: FPGA: Recv ZSGSRD 30802
17-03-17 17:58:26.658 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:26.658 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:26.658 -07 000000486 INF: FPGA: Recv ZSGSRD 30798
17-03-17 17:58:26.668 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:26.668 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:26.668 -07 000000448 INF: FPGA: Recv ZPIEZORD 26676
17-03-17 17:58:26.678 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:26.678 -07 000000593 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.606 V. Piezo Error = -9.1 V.
17-03-17 17:58:26.678 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30802 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30802 (-137.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30796 (-137.4 uncal um), Max = 30805 (-137.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:58:26.678 -07 000000593 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30802, posNoise = 3, negNoise = 6
17-03-17 17:58:26.678 -07 000000593 INF: Z Motor: After move to -0.138187, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:26.678 -07 000000593 INF: Z Motor: Settle wait time = 1472 ms, measure time = 105 ms (allowed 150 ms), total time = 1577 ms
17-03-17 17:58:26.678 -07 000000593 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 17:58:26.728 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-17 17:58:26.728 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:58:26.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:26.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:26.728 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:58:26.728 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:26.728 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:26.728 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:26.728 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:26.728 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:58:26.738 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:58:26.738 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:58:26.738 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:58:26.738 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:58:26.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:58:26.788 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:58:26.988 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:58:26.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:58:26.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:58:26.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:58:27.028 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:58:27.028 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:58:27.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 17:58:27.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:58:27.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:27.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:58:27.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:58:27.128 -07 000000501 INF: Autofocus start
17-03-17 17:58:27.128 -07 000000501 INF: MeasureProfile start
17-03-17 17:58:27.128 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:27.128 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:27.138 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:27.138 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:58:27.138 -07 000000501 INF: MeasureProfile done
17-03-17 17:58:27.138 -07 000000501 INF: X=32  Z correction [um]=0.1299841
17-03-17 17:58:27.138 -07 000000501 INF: Autofocus finished
17-03-17 17:58:27.338 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:58:27.338 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:58:27.338 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.138201934401656. ----------
17-03-17 17:58:27.338 -07 000000610 INF: Cycle	7	Tile	8	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:58:27.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28728, sync = True, waitForSettling = True)
17-03-17 17:58:27.348 -07 000000610 INF: Z Motor: Moving to -0.131508 mm, started at -0.138202 mm, distance = 6.69 um
17-03-17 17:58:27.348 -07 000000610 INF: FPGA: Xmit ZDACW 28728\n [Z Motor]
17-03-17 17:58:27.348 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 17:58:27.358 -07 000000610 INF: FPGA: 'ZDACW 28728' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:58:27.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:27.358 -07 000000623 INF: FPGA: Recv ZDACR 28728
17-03-17 17:58:27.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:27.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:58:27.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:27.518 -07 000000482 INF: FPGA: Recv ZSGSRD 29765
17-03-17 17:58:27.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:27.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:27.528 -07 000000561 INF: FPGA: Recv ZSGSRD 29759
17-03-17 17:58:27.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:27.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:27.538 -07 000000576 INF: FPGA: Recv ZSGSRD 29760
17-03-17 17:58:27.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:27.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:27.548 -07 000000448 INF: FPGA: Recv ZSGSRD 29760
17-03-17 17:58:27.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:27.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:27.558 -07 000000551 INF: FPGA: Recv ZSGSRD 29760
17-03-17 17:58:27.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:27.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:27.568 -07 000000433 INF: FPGA: Recv ZSGSRD 29758
17-03-17 17:58:27.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:27.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:27.578 -07 000000593 INF: FPGA: Recv ZSGSRD 29765
17-03-17 17:58:27.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:27.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:27.588 -07 000000480 INF: FPGA: Recv ZSGSRD 29758
17-03-17 17:58:27.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:27.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:27.598 -07 000000501 INF: FPGA: Recv ZSGSRD 29765
17-03-17 17:58:27.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:27.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:27.608 -07 000000561 INF: FPGA: Recv ZSGSRD 29762
17-03-17 17:58:27.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:27.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:27.618 -07 000000486 INF: FPGA: Recv ZPIEZORD 25335
17-03-17 17:58:27.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:27.628 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.384 V. Piezo Error = -9.7 V.
17-03-17 17:58:27.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29761 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29760 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29758 (-130.7 uncal um), Max = 29765 (-130.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:58:27.628 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29761, posNoise = 4, negNoise = 3
17-03-17 17:58:27.628 -07 000000610 INF: Z Motor: After move to -0.131508, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:27.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:58:27.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:27.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:27.628 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:27.628 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:27.628 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:27.628 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:27.628 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:27.628 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:27.628 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:58:27.628 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:27.628 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:58:27.628 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:27.638 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:58:27.638 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:27.638 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:58:27.638 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:27.648 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:58:27.648 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:58:27.648 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:58:27.648 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:58:27.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28904 150\n [Camera]
17-03-17 17:58:27.848 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:28.238 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:58:28.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:58:28.238 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:28.238 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:58:28.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:58:28.238 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:28.248 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:28.248 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:58:28.248 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:28.248 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:58:28.428 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28904 776
17-03-17 17:58:28.578 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:58:28.618 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:58:28.618 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:58:28.618 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:28.628 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 17:58:28.628 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:58:28.628 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:28.628 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:58:28.628 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:58:28.628 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:58:28.638 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:58:28.768 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:58:28.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:58:28.768 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:28.768 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:28.768 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 17:58:28.768 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:58:28.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:58:28.768 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:28.768 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:28.768 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1102057120, 0x0, 418435064) start.
17-03-17 17:58:28.958 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:58:28.958 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:58:28.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28904 150' command took 2 ms to send, 1309 ms to get response, and 1316 ms overall
17-03-17 17:58:28.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:58:28.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.131514329562083. ------
17-03-17 17:58:28.968 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:28.968 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13791 mm
17-03-17 17:58:28.968 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:58:28.968 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:28.968 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 17:58:28.968 -07 000000627 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 17:58:28.968 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30126, sync = True, waitForSettling = False)
17-03-17 17:58:28.968 -07 000000433 INF: Z Motor: Moving to -0.137908 mm, started at -0.131514 mm, distance = -6.39 um
17-03-17 17:58:28.978 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:58:28.978 -07 000000433 INF: FPGA: Xmit ZDACW 30126\n [Z Motor]
17-03-17 17:58:28.978 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:58:28.988 -07 000000433 INF: FPGA: 'ZDACW 30126' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:58:28.988 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:28.988 -07 000000476 INF: FPGA: Recv ZDACR 30126
17-03-17 17:58:28.998 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:28.998 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:28.998 -07 000000433 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 17:58:28.998 -07 000000501 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:58:29.008 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:58:29.008 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 17:58:29.008 -07 000000627 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:29.008 -07 000000627 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:58:29.008 -07 000000627 INF: Y Motor: Moving 1340 steps-16
17-03-17 17:58:29.018 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:58:29.148 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:58:29.158 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:58:29.158 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:29.158 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1102057120, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 17:58:29.158 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:58:29.158 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:29.158 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:58:29.158 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:58:29.158 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:29.168 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 17:58:29.208 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:58:29.208 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 230 ms overall
17-03-17 17:58:29.388 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 17:58:29.388 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 17:58:29.438 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:29.438 -07 000000576 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:58:29.448 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:58:29.448 -07 000000627 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:29.448 -07 000000627 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:58:29.448 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-17 17:58:30.148 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.986717,
17-03-17 17:58:30.398 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:30.398 -07 000000448 INF: FPGA: Recv YRDPOS 136274
17-03-17 17:58:30.408 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:30.408 -07 000000627 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:30.428 -07 000000627 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:58:30.428 -07 000000627 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:58:30.428 -07 000000627 INF: Y Motor: Moved to 66.5400 after 1452 ms (table move)
17-03-17 17:58:30.428 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137908 mm (DAC = 30126)
17-03-17 17:58:30.428 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:30.428 -07 000000623 INF: FPGA: Recv ZSGSRD 30760
17-03-17 17:58:30.438 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:58:30.438 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:30.438 -07 000000459 INF: FPGA: Recv ZSGSRD 30760
17-03-17 17:58:30.448 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:30.448 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:30.448 -07 000000561 INF: FPGA: Recv ZSGSRD 30762
17-03-17 17:58:30.458 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:30.458 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:30.458 -07 000000551 INF: FPGA: Recv ZSGSRD 30761
17-03-17 17:58:30.468 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:30.468 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:30.468 -07 000000501 INF: FPGA: Recv ZSGSRD 30756
17-03-17 17:58:30.478 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:30.478 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:30.478 -07 000000623 INF: FPGA: Recv ZSGSRD 30756
17-03-17 17:58:30.488 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:30.488 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:30.488 -07 000000459 INF: FPGA: Recv ZSGSRD 30753
17-03-17 17:58:30.498 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:30.498 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:30.498 -07 000000486 INF: FPGA: Recv ZSGSRD 30753
17-03-17 17:58:30.508 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:30.518 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:30.518 -07 000000476 INF: FPGA: Recv ZSGSRD 30762
17-03-17 17:58:30.528 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:58:30.528 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:30.528 -07 000000576 INF: FPGA: Recv ZSGSRD 30756
17-03-17 17:58:30.538 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:30.548 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:30.548 -07 000000627 INF: FPGA: Recv ZPIEZORD 26636
17-03-17 17:58:30.558 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:58:30.558 -07 000000593 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.597 V. Piezo Error = -9.1 V.
17-03-17 17:58:30.558 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30758 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30758 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30753 (-137.1 uncal um), Max = 30762 (-137.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:58:30.558 -07 000000593 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30758, posNoise = 4, negNoise = 5
17-03-17 17:58:30.558 -07 000000593 INF: Z Motor: After move to -0.137908, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:30.558 -07 000000593 INF: Z Motor: Settle wait time = 1455 ms, measure time = 126 ms (allowed 150 ms), total time = 1581 ms
17-03-17 17:58:30.558 -07 000000593 INF: Z Motor: Waiting extra 24 ms after reading position to reach expected total of 150 ms
17-03-17 17:58:30.588 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-17 17:58:30.588 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:58:30.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:30.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:30.588 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:30.588 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:30.588 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:58:30.588 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:30.588 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:30.588 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:58:30.598 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:30.598 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:58:30.598 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:58:30.598 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:58:30.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:58:30.648 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:58:30.848 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:58:30.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:58:30.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:58:30.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-17 17:58:30.888 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:58:30.888 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:58:30.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:58:30.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:58:30.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:30.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:58:30.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:58:30.988 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:30.988 -07 000000478 INF: Autofocus start
17-03-17 17:58:30.988 -07 000000478 INF: MeasureProfile start
17-03-17 17:58:30.988 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:30.998 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:58:30.998 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:58:30.998 -07 000000478 INF: MeasureProfile done
17-03-17 17:58:30.998 -07 000000478 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:58:30.998 -07 000000478 INF: Autofocus finished
17-03-17 17:58:31.198 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:58:31.198 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:58:31.198 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.137919269067419. ----------
17-03-17 17:58:31.198 -07 000000610 INF: Cycle	7	Tile	9	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:58:31.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28621, sync = True, waitForSettling = True)
17-03-17 17:58:31.208 -07 000000610 INF: Z Motor: Moving to -0.131019 mm, started at -0.137919 mm, distance = 6.90 um
17-03-17 17:58:31.208 -07 000000610 INF: FPGA: Xmit ZDACW 28621\n [Z Motor]
17-03-17 17:58:31.208 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 17:58:31.218 -07 000000610 INF: FPGA: 'ZDACW 28621' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:58:31.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:31.218 -07 000000551 INF: FPGA: Recv ZDACR 28621
17-03-17 17:58:31.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:31.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:58:31.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:31.378 -07 000000593 INF: FPGA: Recv ZSGSRD 29684
17-03-17 17:58:31.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:31.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:31.388 -07 000000478 INF: FPGA: Recv ZSGSRD 29695
17-03-17 17:58:31.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:31.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:31.398 -07 000000486 INF: FPGA: Recv ZSGSRD 29685
17-03-17 17:58:31.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:31.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:31.408 -07 000000482 INF: FPGA: Recv ZSGSRD 29679
17-03-17 17:58:31.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:31.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:31.418 -07 000000431 INF: FPGA: Recv ZSGSRD 29687
17-03-17 17:58:31.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:31.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:31.428 -07 000000561 INF: FPGA: Recv ZSGSRD 29688
17-03-17 17:58:31.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:31.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:31.438 -07 000000627 INF: FPGA: Recv ZSGSRD 29694
17-03-17 17:58:31.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:31.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:31.448 -07 000000480 INF: FPGA: Recv ZSGSRD 29678
17-03-17 17:58:31.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:31.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:31.458 -07 000000448 INF: FPGA: Recv ZSGSRD 29685
17-03-17 17:58:31.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:31.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:31.468 -07 000000623 INF: FPGA: Recv ZSGSRD 29690
17-03-17 17:58:31.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:31.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:31.478 -07 000000561 INF: FPGA: Recv ZPIEZORD 25186
17-03-17 17:58:31.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:31.488 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.9 V.
17-03-17 17:58:31.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29686 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29686 (-130.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29678 (-130.2 uncal um), Max = 29695 (-130.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:58:31.488 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29686, posNoise = 9, negNoise = 8
17-03-17 17:58:31.488 -07 000000610 INF: Z Motor: After move to -0.131019, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:31.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:58:31.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:31.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:31.488 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:31.488 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:31.488 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:31.488 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:31.488 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:31.488 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:31.488 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:58:31.488 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:31.488 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:58:31.488 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:31.498 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:31.498 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:31.498 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:58:31.498 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:31.508 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:58:31.508 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 17:58:31.508 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 17:58:31.508 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:58:31.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28798 150\n [Camera]
17-03-17 17:58:31.548 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:58:31.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:58:31.708 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:32.108 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:58:32.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:58:32.108 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:32.108 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:32.108 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1146289992, 0x0, 391868352) start.
17-03-17 17:58:32.108 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:58:32.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:58:32.108 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:32.108 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:32.108 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:58:32.298 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28798 776
17-03-17 17:58:32.448 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:58:32.508 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1146289992, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 17:58:32.508 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 17:58:32.508 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:32.508 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 17:58:32.508 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 17:58:32.508 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:32.508 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:32.508 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:58:32.508 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:32.518 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 17:58:32.638 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:58:32.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:58:32.638 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:32.638 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:32.638 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 17:58:32.638 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:58:32.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:58:32.638 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:32.638 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:32.638 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 17:58:32.828 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 17:58:32.828 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:58:32.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28798 150' command took 2 ms to send, 1307 ms to get response, and 1317 ms overall
17-03-17 17:58:32.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:58:32.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.131032513651451. ------
17-03-17 17:58:32.838 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:32.838 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13782 mm
17-03-17 17:58:32.838 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:58:32.958 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:32.958 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-17 17:58:32.958 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 17:58:32.958 -07 000000501 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 17:58:32.958 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:32.958 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 30106, sync = True, waitForSettling = False)
17-03-17 17:58:32.958 -07 000000409 INF: Z Motor: Moving to -0.137816 mm, started at -0.131033 mm, distance = -6.78 um
17-03-17 17:58:32.958 -07 000000448 INF: FPGA: Recv YRDPOS 136274
17-03-17 17:58:32.968 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:32.968 -07 000000501 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:32.968 -07 000000501 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:58:32.968 -07 000000501 INF: Y Motor: Moving 1348 steps-27
17-03-17 17:58:32.968 -07 000000409 INF: FPGA: Xmit ZDACW 30106\n [Z Motor]
17-03-17 17:58:32.968 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:58:32.978 -07 000000409 INF: FPGA: 'ZDACW 30106' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:58:32.978 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:58:32.988 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:58:32.998 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:32.998 -07 000000627 INF: FPGA: Recv ZDACR 30106
17-03-17 17:58:33.008 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:58:33.008 -07 000000409 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 17:58:33.038 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 17:58:33.038 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 17:58:33.038 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:33.038 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 17:58:33.038 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 17:58:33.038 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:33.038 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:33.048 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:58:33.048 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 17:58:33.048 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 17:58:33.178 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:58:33.178 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-17 17:58:33.368 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 17:58:33.368 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 17:58:33.398 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:33.398 -07 000000561 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:58:33.408 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:33.408 -07 000000501 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:33.408 -07 000000501 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 17:58:33.408 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 402 ms, distance = 0.843 mm, average velocity = 2.096 mm/sec
17-03-17 17:58:34.358 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:34.358 -07 000000551 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:58:34.368 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:34.368 -07 000000501 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:34.378 -07 000000501 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:58:34.378 -07 000000501 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:58:34.378 -07 000000501 INF: Y Motor: Moved to 67.3726 after 1426 ms (table move)
17-03-17 17:58:34.388 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137816 mm (DAC = 30106)
17-03-17 17:58:34.388 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:34.388 -07 000000501 INF: FPGA: Recv ZSGSRD 30743
17-03-17 17:58:34.398 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:58:34.398 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:34.398 -07 000000627 INF: FPGA: Recv ZSGSRD 30732
17-03-17 17:58:34.408 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:34.408 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:34.408 -07 000000482 INF: FPGA: Recv ZSGSRD 30745
17-03-17 17:58:34.418 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:34.418 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:34.418 -07 000000478 INF: FPGA: Recv ZSGSRD 30753
17-03-17 17:58:34.428 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:34.428 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:34.428 -07 000000458 INF: FPGA: Recv ZSGSRD 30733
17-03-17 17:58:34.438 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:34.438 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:34.438 -07 000000576 INF: FPGA: Recv ZSGSRD 30738
17-03-17 17:58:34.448 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:34.448 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:34.448 -07 000000476 INF: FPGA: Recv ZSGSRD 30746
17-03-17 17:58:34.458 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:34.458 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:34.458 -07 000000486 INF: FPGA: Recv ZSGSRD 30743
17-03-17 17:58:34.468 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:34.468 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:34.468 -07 000000409 INF: FPGA: Recv ZSGSRD 30738
17-03-17 17:58:34.478 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:34.478 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:34.478 -07 000000593 INF: FPGA: Recv ZSGSRD 30735
17-03-17 17:58:34.488 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:34.488 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:34.488 -07 000000482 INF: FPGA: Recv ZPIEZORD 26642
17-03-17 17:58:34.498 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:34.498 -07 000000623 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.594 V. Piezo Error = -9.0 V.
17-03-17 17:58:34.498 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30741 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30740 (-137.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30732 (-137.0 uncal um), Max = 30753 (-137.1 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:58:34.498 -07 000000623 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30741, posNoise = 12, negNoise = 9
17-03-17 17:58:34.498 -07 000000623 INF: Z Motor: After move to -0.137816, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:34.498 -07 000000623 INF: Z Motor: Settle wait time = 1430 ms, measure time = 106 ms (allowed 150 ms), total time = 1536 ms
17-03-17 17:58:34.498 -07 000000623 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:58:34.548 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1707 ms
17-03-17 17:58:34.548 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:58:34.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:34.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:34.548 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:34.548 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:34.548 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:58:34.548 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:34.548 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:34.548 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:58:34.558 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 17:58:34.558 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:58:34.578 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 18 ms.
17-03-17 17:58:34.578 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 25 ms.
17-03-17 17:58:34.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:58:34.628 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:58:34.818 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:58:34.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:58:34.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:58:34.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:58:34.868 -07 000000593 INF: FPGA: Recv @CAMSNAP 283
17-03-17 17:58:34.868 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:58:34.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 17:58:34.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:58:34.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:34.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:58:34.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:58:34.968 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:34.968 -07 000000482 INF: Autofocus start
17-03-17 17:58:34.968 -07 000000482 INF: MeasureProfile start
17-03-17 17:58:34.968 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:34.978 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:58:34.978 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:58:34.978 -07 000000482 INF: MeasureProfile done
17-03-17 17:58:34.978 -07 000000482 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:58:34.978 -07 000000482 INF: Autofocus finished
17-03-17 17:58:35.178 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:58:35.178 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:58:35.178 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137810057461009. ----------
17-03-17 17:58:35.178 -07 000000610 INF: Cycle	7	Tile	10	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:58:35.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28614, sync = True, waitForSettling = True)
17-03-17 17:58:35.188 -07 000000610 INF: Z Motor: Moving to -0.130986 mm, started at -0.137810 mm, distance = 6.82 um
17-03-17 17:58:35.198 -07 000000610 INF: FPGA: Xmit ZDACW 28614\n [Z Motor]
17-03-17 17:58:35.198 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:58:35.208 -07 000000610 INF: FPGA: 'ZDACW 28614' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 17:58:35.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:35.208 -07 000000627 INF: FPGA: Recv ZDACR 28614
17-03-17 17:58:35.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:35.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:58:35.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:35.368 -07 000000409 INF: FPGA: Recv ZSGSRD 29681
17-03-17 17:58:35.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:35.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:35.378 -07 000000433 INF: FPGA: Recv ZSGSRD 29683
17-03-17 17:58:35.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:35.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:35.388 -07 000000476 INF: FPGA: Recv ZSGSRD 29682
17-03-17 17:58:35.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:35.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:35.398 -07 000000561 INF: FPGA: Recv ZSGSRD 29678
17-03-17 17:58:35.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:35.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:35.408 -07 000000459 INF: FPGA: Recv ZSGSRD 29680
17-03-17 17:58:35.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:35.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:35.418 -07 000000478 INF: FPGA: Recv ZSGSRD 29679
17-03-17 17:58:35.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:35.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:35.428 -07 000000593 INF: FPGA: Recv ZSGSRD 29677
17-03-17 17:58:35.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:35.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:35.438 -07 000000561 INF: FPGA: Recv ZSGSRD 29683
17-03-17 17:58:35.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:35.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:35.448 -07 000000482 INF: FPGA: Recv ZSGSRD 29674
17-03-17 17:58:35.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:35.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:35.458 -07 000000551 INF: FPGA: Recv ZSGSRD 29682
17-03-17 17:58:35.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:35.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:35.468 -07 000000459 INF: FPGA: Recv ZPIEZORD 25231
17-03-17 17:58:35.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:35.478 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.8 V.
17-03-17 17:58:35.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29680 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29680 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29674 (-130.2 uncal um), Max = 29683 (-130.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:58:35.478 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29680, posNoise = 3, negNoise = 6
17-03-17 17:58:35.478 -07 000000610 INF: Z Motor: After move to -0.130986, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:35.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 17:58:35.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:35.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:35.478 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:35.478 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:35.478 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:35.478 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:35.478 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:35.478 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:35.478 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:35.478 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:35.478 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:58:35.478 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:35.488 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:58:35.488 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:35.488 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:58:35.488 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:35.498 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 17:58:35.498 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:58:35.498 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:58:35.498 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:58:35.508 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.993549,
17-03-17 17:58:35.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28790 150\n [Camera]
17-03-17 17:58:35.728 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:36.118 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:58:36.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:58:36.118 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:36.118 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:58:36.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:58:36.118 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:36.118 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:36.118 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:58:36.128 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:36.128 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:58:36.308 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28790 776
17-03-17 17:58:36.458 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:58:36.498 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:58:36.498 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:58:36.498 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:36.498 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:58:36.498 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:58:36.498 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:36.508 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:36.508 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:58:36.508 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:36.518 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:58:36.548 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:58:36.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:58:36.648 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:58:36.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:58:36.648 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:36.648 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:58:36.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:58:36.648 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:36.658 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:36.658 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 17:58:36.658 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:36.658 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:58:36.838 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:58:36.838 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:58:36.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28790 150' command took 2 ms to send, 1305 ms to get response, and 1334 ms overall
17-03-17 17:58:36.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:58:36.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.1309939683786. ------
17-03-17 17:58:36.958 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:36.958 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13697 mm
17-03-17 17:58:36.958 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:58:36.958 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 17:58:36.958 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:36.958 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29920, sync = True, waitForSettling = False)
17-03-17 17:58:36.958 -07 000000486 INF: Z Motor: Moving to -0.136965 mm, started at -0.130994 mm, distance = -5.97 um
17-03-17 17:58:36.958 -07 000000459 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 17:58:36.968 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:36.968 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:36.968 -07 000000409 INF: FPGA: Recv YRDPOS 137980
17-03-17 17:58:36.978 -07 000000486 INF: FPGA: Xmit ZDACW 29920\n [Z Motor]
17-03-17 17:58:36.978 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:58:36.978 -07 000000459 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:36.978 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:58:36.978 -07 000000459 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:58:36.978 -07 000000459 INF: Y Motor: Moving 1343 steps-21
17-03-17 17:58:36.988 -07 000000486 INF: FPGA: 'ZDACW 29920' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:58:36.988 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:58:36.998 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:58:37.008 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:37.008 -07 000000623 INF: FPGA: Recv ZDACR 29920
17-03-17 17:58:37.018 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:58:37.018 -07 000000486 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 17:58:37.048 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 17:58:37.048 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:58:37.048 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:37.048 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 17:58:37.048 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:58:37.048 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:37.048 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:37.048 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:58:37.058 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:37.058 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 17:58:37.188 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:58:37.188 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 17:58:37.368 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 17:58:37.368 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 17:58:37.398 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:37.408 -07 000000623 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:58:37.408 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:58:37.408 -07 000000459 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:37.408 -07 000000459 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:58:37.408 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-17 17:58:38.358 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:38.358 -07 000000431 INF: FPGA: Recv YRDPOS 139686
17-03-17 17:58:38.368 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:38.368 -07 000000459 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:38.378 -07 000000459 INF: Y Motor: After move to 68.212608, error = -0.006554, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:58:38.378 -07 000000459 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:58:38.378 -07 000000459 INF: Y Motor: Moved to 68.2061 after 1424 ms (table move)
17-03-17 17:58:38.388 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136965 mm (DAC = 29920)
17-03-17 17:58:38.388 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:38.388 -07 000000476 INF: FPGA: Recv ZSGSRD 30614
17-03-17 17:58:38.398 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:58:38.398 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:38.398 -07 000000561 INF: FPGA: Recv ZSGSRD 30604
17-03-17 17:58:38.408 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:38.408 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:38.408 -07 000000431 INF: FPGA: Recv ZSGSRD 30608
17-03-17 17:58:38.418 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:38.418 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:38.418 -07 000000482 INF: FPGA: Recv ZSGSRD 30613
17-03-17 17:58:38.428 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:38.428 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:38.428 -07 000000593 INF: FPGA: Recv ZSGSRD 30615
17-03-17 17:58:38.438 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:38.438 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:38.438 -07 000000627 INF: FPGA: Recv ZSGSRD 30614
17-03-17 17:58:38.448 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:38.448 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:38.448 -07 000000486 INF: FPGA: Recv ZSGSRD 30610
17-03-17 17:58:38.458 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:38.458 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:38.458 -07 000000459 INF: FPGA: Recv ZSGSRD 30606
17-03-17 17:58:38.468 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:38.468 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:38.468 -07 000000478 INF: FPGA: Recv ZSGSRD 30606
17-03-17 17:58:38.478 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:38.478 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:38.478 -07 000000409 INF: FPGA: Recv ZSGSRD 30605
17-03-17 17:58:38.488 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:38.488 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:38.488 -07 000000623 INF: FPGA: Recv ZPIEZORD 26423
17-03-17 17:58:38.498 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:38.498 -07 000000576 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.565 V. Piezo Error = -9.2 V.
17-03-17 17:58:38.498 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30610 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30609 (-136.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30604 (-136.1 uncal um), Max = 30615 (-136.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:58:38.498 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30610, posNoise = 5, negNoise = 6
17-03-17 17:58:38.498 -07 000000576 INF: Z Motor: After move to -0.136965, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:38.498 -07 000000576 INF: Z Motor: Settle wait time = 1428 ms, measure time = 108 ms (allowed 150 ms), total time = 1536 ms
17-03-17 17:58:38.498 -07 000000576 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:58:38.548 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 17:58:38.548 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:58:38.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:38.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:38.548 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:38.548 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:58:38.548 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:38.548 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:38.548 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:38.548 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:58:38.558 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:38.558 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:58:38.568 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:58:38.568 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 17:58:38.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:58:38.618 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:58:38.818 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:58:38.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:58:38.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:58:38.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:58:38.858 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:58:38.858 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 17:58:38.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 17:58:38.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 17:58:38.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:38.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:58:38.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 17:58:38.958 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:38.958 -07 000000486 INF: Autofocus start
17-03-17 17:58:38.958 -07 000000486 INF: MeasureProfile start
17-03-17 17:58:38.958 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:38.968 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:38.968 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:58:38.968 -07 000000486 INF: MeasureProfile done
17-03-17 17:58:38.968 -07 000000486 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:58:38.968 -07 000000486 INF: Autofocus finished
17-03-17 17:58:39.168 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:58:39.168 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:58:39.168 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2060546875, Z-position -0.136968485670438. ----------
17-03-17 17:58:39.168 -07 000000610 INF: Cycle	7	Tile	11	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:58:39.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28415, sync = True, waitForSettling = True)
17-03-17 17:58:39.178 -07 000000610 INF: Z Motor: Moving to -0.130076 mm, started at -0.136968 mm, distance = 6.89 um
17-03-17 17:58:39.178 -07 000000610 INF: FPGA: Xmit ZDACW 28415\n [Z Motor]
17-03-17 17:58:39.178 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 17:58:39.188 -07 000000610 INF: FPGA: 'ZDACW 28415' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:39.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:39.188 -07 000000486 INF: FPGA: Recv ZDACR 28415
17-03-17 17:58:39.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:39.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:58:39.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:39.348 -07 000000561 INF: FPGA: Recv ZSGSRD 29538
17-03-17 17:58:39.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:39.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:39.358 -07 000000476 INF: FPGA: Recv ZSGSRD 29538
17-03-17 17:58:39.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:39.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:39.368 -07 000000459 INF: FPGA: Recv ZSGSRD 29538
17-03-17 17:58:39.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:39.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:39.378 -07 000000551 INF: FPGA: Recv ZSGSRD 29540
17-03-17 17:58:39.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:39.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:39.388 -07 000000482 INF: FPGA: Recv ZSGSRD 29541
17-03-17 17:58:39.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:39.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:39.398 -07 000000458 INF: FPGA: Recv ZSGSRD 29536
17-03-17 17:58:39.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:39.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:39.408 -07 000000593 INF: FPGA: Recv ZSGSRD 29539
17-03-17 17:58:39.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:39.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:39.418 -07 000000431 INF: FPGA: Recv ZSGSRD 29543
17-03-17 17:58:39.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:39.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:39.428 -07 000000482 INF: FPGA: Recv ZSGSRD 29539
17-03-17 17:58:39.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:39.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:39.438 -07 000000486 INF: FPGA: Recv ZSGSRD 29538
17-03-17 17:58:39.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:39.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:39.448 -07 000000627 INF: FPGA: Recv ZPIEZORD 25023
17-03-17 17:58:39.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:39.458 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -9.9 V.
17-03-17 17:58:39.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29539 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29538 (-129.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29536 (-129.3 uncal um), Max = 29543 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:58:39.458 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29539, posNoise = 4, negNoise = 3
17-03-17 17:58:39.458 -07 000000610 INF: Z Motor: After move to -0.130076, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:39.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:58:39.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:39.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:39.458 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:39.458 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:39.458 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:39.458 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:39.458 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:39.458 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:39.458 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:58:39.458 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:39.458 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:39.458 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:39.468 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:58:39.468 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:39.468 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:58:39.468 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:39.478 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:58:39.478 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:58:39.478 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 17:58:39.478 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:58:39.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28592 150\n [Camera]
17-03-17 17:58:39.688 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:40.078 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:58:40.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:58:40.078 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:40.078 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:58:40.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:58:40.078 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:40.078 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:40.078 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:58:40.088 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:40.088 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:58:40.268 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28592 777
17-03-17 17:58:40.418 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:58:40.478 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 17:58:40.478 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:58:40.478 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:40.478 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 17:58:40.478 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:58:40.478 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:40.478 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:40.478 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:58:40.478 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:40.488 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 17:58:40.608 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:58:40.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:58:40.608 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:40.608 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:40.608 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 17:58:40.608 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:58:40.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:58:40.608 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:40.608 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:40.608 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 17:58:40.798 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:58:40.798 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:58:40.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28592 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-17 17:58:40.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:58:40.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2060546875, Z-Position -0.130088154466612. ------
17-03-17 17:58:40.808 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:40.808 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13674 mm
17-03-17 17:58:40.808 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:58:40.808 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:40.808 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 17:58:40.808 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 29871, sync = True, waitForSettling = False)
17-03-17 17:58:40.808 -07 000000593 INF: Z Motor: Moving to -0.136741 mm, started at -0.130088 mm, distance = -6.65 um
17-03-17 17:58:40.808 -07 000000478 INF: Y Motor: Moving to 69.0426 mm, started at 68.2061 mm, delta = 0.8366 mm
17-03-17 17:58:40.818 -07 000000593 INF: FPGA: Xmit ZDACW 29871\n [Z Motor]
17-03-17 17:58:40.818 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:58:40.818 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:58:40.828 -07 000000593 INF: FPGA: 'ZDACW 29871' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:58:40.828 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:40.828 -07 000000486 INF: FPGA: Recv YRDPOS 139686
17-03-17 17:58:40.838 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:58:40.838 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:58:40.838 -07 000000478 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:40.838 -07 000000478 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:58:40.838 -07 000000478 INF: Y Motor: Moving 1338 steps-14
17-03-17 17:58:40.848 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:40.848 -07 000000576 INF: FPGA: Recv ZDACR 29871
17-03-17 17:58:40.858 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:58:40.858 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:58:40.858 -07 000000593 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 17:58:40.878 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.999021,
17-03-17 17:58:40.998 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 17:58:40.998 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:58:40.998 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:40.998 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 17:58:40.998 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:58:40.998 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:40.998 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:41.008 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:58:41.008 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:58:41.008 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 17:58:41.038 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:58:41.038 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:58:41.228 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 17:58:41.228 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 17:58:41.288 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:41.288 -07 000000623 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:58:41.298 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 17:58:41.298 -07 000000478 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:41.298 -07 000000478 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 17:58:41.298 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.102 mm/sec
17-03-17 17:58:41.548 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:58:41.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:58:42.248 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:42.248 -07 000000561 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:58:42.258 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:42.258 -07 000000478 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:42.268 -07 000000478 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:58:42.268 -07 000000478 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:58:42.268 -07 000000478 INF: Y Motor: Moved to 69.0278 after 1463 ms (table move)
17-03-17 17:58:42.278 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136741 mm (DAC = 29871)
17-03-17 17:58:42.278 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:42.278 -07 000000480 INF: FPGA: Recv ZSGSRD 30578
17-03-17 17:58:42.288 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:42.288 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:42.288 -07 000000561 INF: FPGA: Recv ZSGSRD 30582
17-03-17 17:58:42.298 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:42.298 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:42.298 -07 000000623 INF: FPGA: Recv ZSGSRD 30581
17-03-17 17:58:42.308 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:42.308 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:42.308 -07 000000459 INF: FPGA: Recv ZSGSRD 30569
17-03-17 17:58:42.318 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:42.318 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:42.318 -07 000000627 INF: FPGA: Recv ZSGSRD 30577
17-03-17 17:58:42.328 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:42.328 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:42.328 -07 000000476 INF: FPGA: Recv ZSGSRD 30572
17-03-17 17:58:42.338 -07 000000458 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:42.338 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:42.338 -07 000000478 INF: FPGA: Recv ZSGSRD 30570
17-03-17 17:58:42.348 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:42.348 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:42.348 -07 000000501 INF: FPGA: Recv ZSGSRD 30573
17-03-17 17:58:42.358 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:42.358 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:42.358 -07 000000501 INF: FPGA: Recv ZSGSRD 30572
17-03-17 17:58:42.368 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:42.368 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:42.368 -07 000000486 INF: FPGA: Recv ZSGSRD 30578
17-03-17 17:58:42.378 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:42.378 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:42.378 -07 000000627 INF: FPGA: Recv ZPIEZORD 26427
17-03-17 17:58:42.388 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:42.388 -07 000000458 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.558 V. Piezo Error = -9.1 V.
17-03-17 17:58:42.388 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30575 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30575 (-135.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30569 (-135.9 uncal um), Max = 30582 (-136.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:58:42.388 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30575, posNoise = 7, negNoise = 6
17-03-17 17:58:42.388 -07 000000458 INF: Z Motor: After move to -0.136741, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:42.388 -07 000000458 INF: Z Motor: Settle wait time = 1466 ms, measure time = 108 ms (allowed 150 ms), total time = 1574 ms
17-03-17 17:58:42.388 -07 000000458 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:58:42.438 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-17 17:58:42.438 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:58:42.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:42.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:42.438 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:42.438 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:42.438 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:58:42.438 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:42.438 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:42.438 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:58:42.448 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:42.448 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:58:42.448 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:58:42.448 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:58:42.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:58:42.498 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:58:42.698 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:58:42.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:58:42.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:58:42.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-17 17:58:42.738 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:58:42.738 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 17:58:42.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 17:58:42.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 17:58:42.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:42.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:58:42.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 17:58:42.938 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:42.938 -07 000000431 INF: Autofocus start
17-03-17 17:58:42.938 -07 000000431 INF: MeasureProfile start
17-03-17 17:58:42.938 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:42.948 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:42.948 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:58:42.958 -07 000000431 INF: MeasureProfile done
17-03-17 17:58:42.958 -07 000000431 INF: X=-7  Z correction [um]=-0.03747771
17-03-17 17:58:42.958 -07 000000431 INF: Autofocus finished
17-03-17 17:58:43.148 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:58:43.148 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:58:43.148 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.136743638245476. ----------
17-03-17 17:58:43.148 -07 000000610 INF: Cycle	7	Tile	12	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:58:43.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28375, sync = True, waitForSettling = True)
17-03-17 17:58:43.158 -07 000000610 INF: Z Motor: Moving to -0.129892 mm, started at -0.136744 mm, distance = 6.85 um
17-03-17 17:58:43.158 -07 000000610 INF: FPGA: Xmit ZDACW 28375\n [Z Motor]
17-03-17 17:58:43.158 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 17:58:43.168 -07 000000610 INF: FPGA: 'ZDACW 28375' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:58:43.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:43.168 -07 000000431 INF: FPGA: Recv ZDACR 28375
17-03-17 17:58:43.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:43.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:58:43.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:43.328 -07 000000478 INF: FPGA: Recv ZSGSRD 29509
17-03-17 17:58:43.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:43.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:43.338 -07 000000551 INF: FPGA: Recv ZSGSRD 29508
17-03-17 17:58:43.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:43.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:43.348 -07 000000458 INF: FPGA: Recv ZSGSRD 29509
17-03-17 17:58:43.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:43.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:43.358 -07 000000576 INF: FPGA: Recv ZSGSRD 29510
17-03-17 17:58:43.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:43.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:43.368 -07 000000459 INF: FPGA: Recv ZSGSRD 29510
17-03-17 17:58:43.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:43.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:43.378 -07 000000482 INF: FPGA: Recv ZSGSRD 29506
17-03-17 17:58:43.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:43.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:43.388 -07 000000478 INF: FPGA: Recv ZSGSRD 29511
17-03-17 17:58:43.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:43.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:43.398 -07 000000561 INF: FPGA: Recv ZSGSRD 29509
17-03-17 17:58:43.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:43.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:43.408 -07 000000551 INF: FPGA: Recv ZSGSRD 29507
17-03-17 17:58:43.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:43.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:43.418 -07 000000482 INF: FPGA: Recv ZSGSRD 29503
17-03-17 17:58:43.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:43.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:43.428 -07 000000458 INF: FPGA: Recv ZPIEZORD 25031
17-03-17 17:58:43.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:43.438 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.330 V. Piezo Error = -9.8 V.
17-03-17 17:58:43.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29508 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29509 (-129.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29503 (-129.1 uncal um), Max = 29511 (-129.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:58:43.438 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29508, posNoise = 3, negNoise = 5
17-03-17 17:58:43.438 -07 000000610 INF: Z Motor: After move to -0.129892, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:43.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:58:43.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:43.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:43.438 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:43.438 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:43.438 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:43.438 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:43.438 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:43.438 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:43.438 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:58:43.438 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:43.438 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:43.438 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:43.448 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:58:43.448 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:43.448 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:58:43.448 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:43.458 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:58:43.458 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:58:43.458 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:58:43.458 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:58:43.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28552 150\n [Camera]
17-03-17 17:58:43.658 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:44.048 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:58:44.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:58:44.048 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:44.048 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:44.048 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-17 17:58:44.048 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:58:44.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:58:44.048 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:44.048 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:44.048 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:58:44.238 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28552 776
17-03-17 17:58:44.388 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:58:44.458 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 17:58:44.458 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:58:44.458 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:44.458 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:44.458 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 17:58:44.458 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 17:58:44.458 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 17:58:44.458 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:44.458 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:44.468 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 17:58:44.578 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:58:44.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:58:44.578 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:44.578 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:44.578 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 17:58:44.578 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:58:44.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:58:44.578 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:44.578 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:44.578 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 17:58:44.768 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 17:58:44.768 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:58:44.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28552 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 17:58:44.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:58:44.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.129889003890217. ------
17-03-17 17:58:44.778 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13634 mm
17-03-17 17:58:44.778 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:58:44.778 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:44.778 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:44.898 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-17 17:58:44.898 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 17:58:44.898 -07 000000459 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 17:58:44.898 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29783, sync = True, waitForSettling = False)
17-03-17 17:58:44.898 -07 000000561 INF: Z Motor: Moving to -0.136338 mm, started at -0.129889 mm, distance = -6.45 um
17-03-17 17:58:44.898 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:58:44.908 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:44.908 -07 000000501 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:58:44.918 -07 000000561 INF: FPGA: Xmit ZDACW 29783\n [Z Motor]
17-03-17 17:58:44.918 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:58:44.918 -07 000000459 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:44.918 -07 000000459 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:58:44.918 -07 000000459 INF: Y Motor: Moving 1352 steps-30
17-03-17 17:58:44.918 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:58:44.928 -07 000000561 INF: FPGA: 'ZDACW 29783' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:58:44.928 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:58:44.938 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:44.938 -07 000000627 INF: FPGA: Recv ZDACR 29783
17-03-17 17:58:44.948 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:58:44.948 -07 000000561 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 17:58:44.968 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 17:58:44.968 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:58:44.968 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:44.968 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 17:58:44.968 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:58:44.968 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:44.978 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:44.978 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:58:44.978 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 17:58:44.988 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 17:58:45.108 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:58:45.108 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 201 ms to get response, and 204 ms overall
17-03-17 17:58:45.298 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 17:58:45.298 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 17:58:45.338 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:45.338 -07 000000551 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:58:45.348 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:45.348 -07 000000459 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:45.348 -07 000000459 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 17:58:45.348 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.183 mm/sec
17-03-17 17:58:46.238 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.986717,
17-03-17 17:58:46.298 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:46.298 -07 000000486 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:58:46.308 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:46.308 -07 000000459 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:46.318 -07 000000459 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:58:46.318 -07 000000459 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:58:46.318 -07 000000459 INF: Y Motor: Moved to 69.8638 after 1421 ms (table move)
17-03-17 17:58:46.328 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136338 mm (DAC = 29783)
17-03-17 17:58:46.328 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:46.328 -07 000000482 INF: FPGA: Recv ZSGSRD 30511
17-03-17 17:58:46.338 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:46.338 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:46.338 -07 000000501 INF: FPGA: Recv ZSGSRD 30509
17-03-17 17:58:46.348 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:46.348 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:46.348 -07 000000486 INF: FPGA: Recv ZSGSRD 30519
17-03-17 17:58:46.358 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:46.358 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:46.358 -07 000000623 INF: FPGA: Recv ZSGSRD 30514
17-03-17 17:58:46.368 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:46.368 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:46.368 -07 000000482 INF: FPGA: Recv ZSGSRD 30515
17-03-17 17:58:46.378 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:46.388 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:46.388 -07 000000576 INF: FPGA: Recv ZSGSRD 30513
17-03-17 17:58:46.398 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:58:46.398 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:46.398 -07 000000476 INF: FPGA: Recv ZSGSRD 30504
17-03-17 17:58:46.408 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:46.408 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:46.408 -07 000000458 INF: FPGA: Recv ZSGSRD 30503
17-03-17 17:58:46.418 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:46.418 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:46.418 -07 000000623 INF: FPGA: Recv ZSGSRD 30512
17-03-17 17:58:46.428 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:46.428 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:46.428 -07 000000480 INF: FPGA: Recv ZSGSRD 30514
17-03-17 17:58:46.438 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:46.438 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:46.438 -07 000000409 INF: FPGA: Recv ZPIEZORD 26405
17-03-17 17:58:46.448 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:46.448 -07 000000593 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.545 V. Piezo Error = -9.0 V.
17-03-17 17:58:46.448 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30511 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30512 (-135.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30503 (-135.5 uncal um), Max = 30519 (-135.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:58:46.448 -07 000000593 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30511, posNoise = 8, negNoise = 8
17-03-17 17:58:46.448 -07 000000593 INF: Z Motor: After move to -0.136338, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:46.448 -07 000000593 INF: Z Motor: Settle wait time = 1425 ms, measure time = 117 ms (allowed 150 ms), total time = 1542 ms
17-03-17 17:58:46.448 -07 000000593 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 17:58:46.488 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1706 ms
17-03-17 17:58:46.488 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:58:46.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:46.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:46.488 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:46.488 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:46.488 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:58:46.488 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:46.498 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:46.498 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:58:46.498 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:46.498 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:58:46.508 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:58:46.508 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:58:46.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:58:46.548 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:58:46.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:58:46.558 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:58:46.758 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:58:46.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:58:46.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:58:46.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:58:46.798 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:58:46.798 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:58:46.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 17:58:46.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:58:46.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:46.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:58:46.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:58:46.898 -07 000000593 INF: Autofocus start
17-03-17 17:58:46.898 -07 000000593 INF: MeasureProfile start
17-03-17 17:58:46.898 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:46.898 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:46.908 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:46.908 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:58:46.908 -07 000000593 INF: MeasureProfile done
17-03-17 17:58:46.908 -07 000000593 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:58:46.908 -07 000000593 INF: Autofocus finished
17-03-17 17:58:47.108 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:58:47.108 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:58:47.108 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.136332488668404. ----------
17-03-17 17:58:47.108 -07 000000610 INF: Cycle	7	Tile	13	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:58:47.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28307, sync = True, waitForSettling = True)
17-03-17 17:58:47.118 -07 000000610 INF: Z Motor: Moving to -0.129581 mm, started at -0.136332 mm, distance = 6.75 um
17-03-17 17:58:47.118 -07 000000610 INF: FPGA: Xmit ZDACW 28307\n [Z Motor]
17-03-17 17:58:47.118 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:58:47.128 -07 000000610 INF: FPGA: 'ZDACW 28307' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:58:47.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:47.128 -07 000000482 INF: FPGA: Recv ZDACR 28307
17-03-17 17:58:47.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:47.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:58:47.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:47.288 -07 000000576 INF: FPGA: Recv ZSGSRD 29460
17-03-17 17:58:47.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:47.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:47.298 -07 000000458 INF: FPGA: Recv ZSGSRD 29462
17-03-17 17:58:47.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:47.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:47.308 -07 000000623 INF: FPGA: Recv ZSGSRD 29464
17-03-17 17:58:47.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:47.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:47.318 -07 000000627 INF: FPGA: Recv ZSGSRD 29457
17-03-17 17:58:47.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:47.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:47.328 -07 000000576 INF: FPGA: Recv ZSGSRD 29460
17-03-17 17:58:47.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:47.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:47.338 -07 000000458 INF: FPGA: Recv ZSGSRD 29460
17-03-17 17:58:47.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:47.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:47.348 -07 000000623 INF: FPGA: Recv ZSGSRD 29463
17-03-17 17:58:47.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:47.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:47.358 -07 000000482 INF: FPGA: Recv ZSGSRD 29460
17-03-17 17:58:47.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:47.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:47.368 -07 000000551 INF: FPGA: Recv ZSGSRD 29456
17-03-17 17:58:47.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:47.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:47.378 -07 000000459 INF: FPGA: Recv ZSGSRD 29459
17-03-17 17:58:47.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:47.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:47.388 -07 000000623 INF: FPGA: Recv ZPIEZORD 24999
17-03-17 17:58:47.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:47.398 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.319 V. Piezo Error = -9.8 V.
17-03-17 17:58:47.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29460 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29460 (-128.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29456 (-128.8 uncal um), Max = 29464 (-128.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:58:47.398 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29460, posNoise = 4, negNoise = 4
17-03-17 17:58:47.398 -07 000000610 INF: Z Motor: After move to -0.129581, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:47.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:58:47.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:47.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:47.398 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:47.398 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:47.398 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:47.398 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:47.398 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:47.398 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:58:47.398 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:47.398 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:47.398 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:58:47.398 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:47.408 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:47.408 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:47.408 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:58:47.408 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:47.418 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-17 17:58:47.418 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:58:47.428 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-17 17:58:47.428 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 17:58:47.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28484 150\n [Camera]
17-03-17 17:58:47.628 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:48.018 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:58:48.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:58:48.018 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:48.018 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:58:48.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:58:48.018 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:48.028 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:48.028 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:58:48.028 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:48.028 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:58:48.208 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28484 776
17-03-17 17:58:48.358 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:58:48.418 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 17:58:48.418 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:58:48.418 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:48.418 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 17:58:48.418 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:58:48.418 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:48.418 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:48.428 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:48.428 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:58:48.428 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 17:58:48.548 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:58:48.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:58:48.548 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:48.548 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:58:48.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:58:48.558 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:48.558 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:48.558 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 17:58:48.568 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:48.568 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:58:48.738 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:58:48.738 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:58:48.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28484 150' command took 2 ms to send, 1308 ms to get response, and 1315 ms overall
17-03-17 17:58:48.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:58:48.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.129580641707413. ------
17-03-17 17:58:48.858 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13597 mm
17-03-17 17:58:48.858 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:58:48.858 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:48.858 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:48.858 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 29704, sync = True, waitForSettling = False)
17-03-17 17:58:48.858 -07 000000458 INF: Z Motor: Moving to -0.135976 mm, started at -0.129581 mm, distance = -6.40 um
17-03-17 17:58:48.868 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:58:48.868 -07 000000458 INF: FPGA: Xmit ZDACW 29704\n [Z Motor]
17-03-17 17:58:48.868 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 17:58:48.868 -07 000000576 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 17:58:48.868 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 17:58:48.878 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:58:48.878 -07 000000458 INF: FPGA: 'ZDACW 29704' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:48.888 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:48.888 -07 000000482 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:58:48.898 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:48.898 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:58:48.898 -07 000000576 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:48.898 -07 000000576 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:58:48.898 -07 000000576 INF: Y Motor: Moving 1342 steps-18
17-03-17 17:58:48.898 -07 000000593 INF: FPGA: Recv ZDACR 29704
17-03-17 17:58:48.908 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:58:48.908 -07 000000458 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 17:58:48.908 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:58:48.958 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 17:58:48.958 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:58:48.958 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:48.958 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 17:58:48.958 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:58:48.958 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:48.958 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:48.958 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 17:58:48.958 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:48.968 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 17:58:49.078 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:58:49.078 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 17:58:49.278 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 17:58:49.278 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 17:58:49.308 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:49.318 -07 000000486 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:58:49.318 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:58:49.318 -07 000000576 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:49.318 -07 000000576 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:58:49.318 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.168 mm/sec
17-03-17 17:58:50.268 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:50.268 -07 000000478 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:58:50.278 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:50.278 -07 000000576 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:50.298 -07 000000576 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:58:50.298 -07 000000576 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:58:50.298 -07 000000576 INF: Y Motor: Moved to 70.6890 after 1430 ms (table move)
17-03-17 17:58:50.298 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135976 mm (DAC = 29704)
17-03-17 17:58:50.298 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:50.298 -07 000000409 INF: FPGA: Recv ZSGSRD 30457
17-03-17 17:58:50.308 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:50.308 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:50.308 -07 000000551 INF: FPGA: Recv ZSGSRD 30449
17-03-17 17:58:50.318 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:50.318 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:50.318 -07 000000478 INF: FPGA: Recv ZSGSRD 30447
17-03-17 17:58:50.328 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:50.328 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:50.328 -07 000000561 INF: FPGA: Recv ZSGSRD 30458
17-03-17 17:58:50.338 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:50.338 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:50.338 -07 000000433 INF: FPGA: Recv ZSGSRD 30464
17-03-17 17:58:50.348 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:50.348 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:50.348 -07 000000482 INF: FPGA: Recv ZSGSRD 30462
17-03-17 17:58:50.358 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:50.358 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:50.358 -07 000000458 INF: FPGA: Recv ZSGSRD 30457
17-03-17 17:58:50.368 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:50.368 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:50.368 -07 000000593 INF: FPGA: Recv ZSGSRD 30457
17-03-17 17:58:50.378 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:50.378 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:50.378 -07 000000627 INF: FPGA: Recv ZSGSRD 30455
17-03-17 17:58:50.388 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:50.388 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:50.388 -07 000000476 INF: FPGA: Recv ZSGSRD 30450
17-03-17 17:58:50.398 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:50.398 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:50.398 -07 000000478 INF: FPGA: Recv ZPIEZORD 26328
17-03-17 17:58:50.408 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:50.408 -07 000000501 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.533 V. Piezo Error = -9.1 V.
17-03-17 17:58:50.408 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30456 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30457 (-135.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30447 (-135.1 uncal um), Max = 30464 (-135.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:58:50.408 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30456, posNoise = 8, negNoise = 9
17-03-17 17:58:50.408 -07 000000501 INF: Z Motor: After move to -0.135976, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:50.408 -07 000000501 INF: Z Motor: Settle wait time = 1433 ms, measure time = 107 ms (allowed 150 ms), total time = 1540 ms
17-03-17 17:58:50.408 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:58:50.458 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 17:58:50.458 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:58:50.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:50.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:50.458 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:50.458 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:50.458 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:58:50.458 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:50.458 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:58:50.458 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:58:50.468 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:50.468 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:58:50.478 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 17:58:50.478 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:58:50.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:58:50.528 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:58:50.718 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:58:50.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:58:50.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:58:50.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:58:50.758 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:58:50.758 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 17:58:50.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 17:58:50.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:58:50.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:50.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:58:50.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 17:58:50.868 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:50.868 -07 000000501 INF: Autofocus start
17-03-17 17:58:50.868 -07 000000501 INF: MeasureProfile start
17-03-17 17:58:50.868 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:50.878 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:50.878 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:58:50.878 -07 000000501 INF: MeasureProfile done
17-03-17 17:58:50.878 -07 000000501 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:58:50.878 -07 000000501 INF: Autofocus finished
17-03-17 17:58:51.078 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:58:51.078 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:58:51.078 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.135979157000607. ----------
17-03-17 17:58:51.078 -07 000000610 INF: Cycle	7	Tile	14	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:58:51.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28198, sync = True, waitForSettling = True)
17-03-17 17:58:51.088 -07 000000610 INF: Z Motor: Moving to -0.129082 mm, started at -0.135979 mm, distance = 6.90 um
17-03-17 17:58:51.088 -07 000000610 INF: FPGA: Xmit ZDACW 28198\n [Z Motor]
17-03-17 17:58:51.088 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:58:51.098 -07 000000610 INF: FPGA: 'ZDACW 28198' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:58:51.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:51.098 -07 000000576 INF: FPGA: Recv ZDACR 28198
17-03-17 17:58:51.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:51.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:58:51.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:51.258 -07 000000458 INF: FPGA: Recv ZSGSRD 29378
17-03-17 17:58:51.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:51.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:51.268 -07 000000486 INF: FPGA: Recv ZSGSRD 29384
17-03-17 17:58:51.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:51.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:51.288 -07 000000458 INF: FPGA: Recv ZSGSRD 29385
17-03-17 17:58:51.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:58:51.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:51.298 -07 000000486 INF: FPGA: Recv ZSGSRD 29379
17-03-17 17:58:51.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:51.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:51.308 -07 000000623 INF: FPGA: Recv ZSGSRD 29387
17-03-17 17:58:51.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:51.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:51.318 -07 000000576 INF: FPGA: Recv ZSGSRD 29379
17-03-17 17:58:51.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:51.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:51.328 -07 000000458 INF: FPGA: Recv ZSGSRD 29381
17-03-17 17:58:51.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:51.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:51.338 -07 000000478 INF: FPGA: Recv ZSGSRD 29385
17-03-17 17:58:51.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:51.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:51.348 -07 000000551 INF: FPGA: Recv ZSGSRD 29388
17-03-17 17:58:51.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:51.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:51.358 -07 000000459 INF: FPGA: Recv ZSGSRD 29381
17-03-17 17:58:51.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:51.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:51.368 -07 000000433 INF: FPGA: Recv ZPIEZORD 24889
17-03-17 17:58:51.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:51.378 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -9.9 V.
17-03-17 17:58:51.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29383 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29382 (-128.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29378 (-128.3 uncal um), Max = 29388 (-128.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:58:51.378 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29383, posNoise = 5, negNoise = 5
17-03-17 17:58:51.378 -07 000000610 INF: Z Motor: After move to -0.129082, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:51.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-17 17:58:51.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:51.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:51.378 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:51.378 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:51.378 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:51.378 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:51.378 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:51.378 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:51.378 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:51.378 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:51.378 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:58:51.378 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:51.388 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:58:51.388 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:51.388 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:58:51.388 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:51.398 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:58:51.398 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:58:51.398 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 17:58:51.398 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:58:51.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28375 150\n [Camera]
17-03-17 17:58:51.548 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:58:51.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:58:51.598 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.988112,
17-03-17 17:58:51.608 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:51.998 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:58:51.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:58:51.998 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:51.998 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:58:51.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:58:51.998 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:51.998 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:51.998 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:58:52.008 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:52.008 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:58:52.188 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28375 776
17-03-17 17:58:52.338 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:58:52.388 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 17:58:52.388 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:58:52.388 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:52.388 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 17:58:52.388 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:58:52.388 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:52.398 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:52.398 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 17:58:52.398 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:52.398 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:58:52.528 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:58:52.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:58:52.528 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:52.528 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:52.528 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 17:58:52.528 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:58:52.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:58:52.528 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:52.528 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:52.528 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 17:58:52.718 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:58:52.718 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:58:52.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28375 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-17 17:58:52.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:58:52.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129085977372497. ------
17-03-17 17:58:52.728 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:52.728 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13579 mm
17-03-17 17:58:52.728 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:58:52.728 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:52.728 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 17:58:52.728 -07 000000431 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 17:58:52.728 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29663, sync = True, waitForSettling = False)
17-03-17 17:58:52.728 -07 000000623 INF: Z Motor: Moving to -0.135789 mm, started at -0.129086 mm, distance = -6.70 um
17-03-17 17:58:52.738 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:58:52.738 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:52.738 -07 000000459 INF: FPGA: Recv YRDPOS 144772
17-03-17 17:58:52.748 -07 000000623 INF: FPGA: Xmit ZDACW 29663\n [Z Motor]
17-03-17 17:58:52.748 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:58:52.748 -07 000000431 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:52.748 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 17:58:52.748 -07 000000431 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:58:52.748 -07 000000431 INF: Y Motor: Moving 1349 steps-28
17-03-17 17:58:52.758 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:58:52.758 -07 000000623 INF: FPGA: 'ZDACW 29663' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:58:52.768 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:58:52.778 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:52.778 -07 000000480 INF: FPGA: Recv ZDACR 29663
17-03-17 17:58:52.788 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:58:52.788 -07 000000623 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 17:58:52.908 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 17:58:52.908 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:58:52.908 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:52.918 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 17:58:52.918 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 17:58:52.918 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:52.918 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:52.918 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 17:58:52.918 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:58:52.928 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:58:52.958 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:58:52.958 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:58:53.148 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 17:58:53.148 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 393 ms overall
17-03-17 17:58:53.188 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:53.188 -07 000000459 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:58:53.198 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:58:53.198 -07 000000431 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:53.198 -07 000000431 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:58:53.198 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.147 mm/sec
17-03-17 17:58:54.148 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:54.148 -07 000000551 INF: FPGA: Recv YRDPOS 146473
17-03-17 17:58:54.158 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:54.158 -07 000000431 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:54.178 -07 000000431 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:58:54.178 -07 000000431 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:58:54.178 -07 000000431 INF: Y Motor: Moved to 71.5200 after 1446 ms (table move)
17-03-17 17:58:54.178 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135789 mm (DAC = 29663)
17-03-17 17:58:54.178 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:54.178 -07 000000478 INF: FPGA: Recv ZSGSRD 30441
17-03-17 17:58:54.188 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:58:54.188 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:54.188 -07 000000593 INF: FPGA: Recv ZSGSRD 30426
17-03-17 17:58:54.198 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:54.198 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:54.198 -07 000000623 INF: FPGA: Recv ZSGSRD 30418
17-03-17 17:58:54.208 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:54.208 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:54.208 -07 000000458 INF: FPGA: Recv ZSGSRD 30419
17-03-17 17:58:54.218 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:54.218 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:54.218 -07 000000478 INF: FPGA: Recv ZSGSRD 30427
17-03-17 17:58:54.228 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:54.228 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:54.228 -07 000000431 INF: FPGA: Recv ZSGSRD 30428
17-03-17 17:58:54.238 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:54.238 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:54.238 -07 000000551 INF: FPGA: Recv ZSGSRD 30428
17-03-17 17:58:54.248 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:54.248 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:54.248 -07 000000433 INF: FPGA: Recv ZSGSRD 30438
17-03-17 17:58:54.258 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:54.258 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:54.258 -07 000000501 INF: FPGA: Recv ZSGSRD 30429
17-03-17 17:58:54.268 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:54.268 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:54.268 -07 000000431 INF: FPGA: Recv ZSGSRD 30426
17-03-17 17:58:54.278 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:54.278 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:54.278 -07 000000561 INF: FPGA: Recv ZPIEZORD 26317
17-03-17 17:58:54.288 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:54.288 -07 000000486 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.526 V. Piezo Error = -9.0 V.
17-03-17 17:58:54.288 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.8 um, Read 10 ADC samples: Avg = 30428 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30428 (-135.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 30418 (-134.9 uncal um), Max = 30441 (-135.1 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:58:54.288 -07 000000486 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30428, posNoise = 13, negNoise = 10
17-03-17 17:58:54.288 -07 000000486 INF: Z Motor: After move to -0.135789, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:54.288 -07 000000486 INF: Z Motor: Settle wait time = 1449 ms, measure time = 107 ms (allowed 150 ms), total time = 1556 ms
17-03-17 17:58:54.288 -07 000000486 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:58:54.338 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 17:58:54.338 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:58:54.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:54.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:54.338 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:54.338 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:54.338 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:58:54.338 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:54.338 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:58:54.338 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:58:54.348 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:54.348 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:58:54.348 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:58:54.348 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:58:54.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:58:54.398 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:58:54.598 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:58:54.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:58:54.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:58:54.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-17 17:58:54.638 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:58:54.638 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 17:58:54.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 17:58:54.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 17:58:54.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:54.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:58:54.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 17:58:54.738 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:54.738 -07 000000551 INF: Autofocus start
17-03-17 17:58:54.738 -07 000000551 INF: MeasureProfile start
17-03-17 17:58:54.738 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:54.748 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:54.748 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:58:54.748 -07 000000551 INF: MeasureProfile done
17-03-17 17:58:54.748 -07 000000551 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:58:54.758 -07 000000551 INF: Autofocus finished
17-03-17 17:58:54.948 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:58:54.948 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:58:54.948 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.135799279060637. ----------
17-03-17 17:58:54.948 -07 000000610 INF: Cycle	7	Tile	15	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:58:54.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28158, sync = True, waitForSettling = True)
17-03-17 17:58:54.958 -07 000000610 INF: Z Motor: Moving to -0.128899 mm, started at -0.135799 mm, distance = 6.90 um
17-03-17 17:58:54.958 -07 000000610 INF: FPGA: Xmit ZDACW 28158\n [Z Motor]
17-03-17 17:58:54.958 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 17:58:54.968 -07 000000610 INF: FPGA: 'ZDACW 28158' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:54.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:54.968 -07 000000458 INF: FPGA: Recv ZDACR 28158
17-03-17 17:58:54.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:54.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:58:55.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:55.128 -07 000000576 INF: FPGA: Recv ZSGSRD 29359
17-03-17 17:58:55.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:55.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:55.138 -07 000000551 INF: FPGA: Recv ZSGSRD 29357
17-03-17 17:58:55.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:55.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:55.148 -07 000000501 INF: FPGA: Recv ZSGSRD 29356
17-03-17 17:58:55.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:55.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:55.158 -07 000000480 INF: FPGA: Recv ZSGSRD 29354
17-03-17 17:58:55.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:55.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:55.168 -07 000000627 INF: FPGA: Recv ZSGSRD 29349
17-03-17 17:58:55.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:55.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:55.178 -07 000000476 INF: FPGA: Recv ZSGSRD 29355
17-03-17 17:58:55.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:55.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:55.188 -07 000000623 INF: FPGA: Recv ZSGSRD 29358
17-03-17 17:58:55.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:55.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:55.198 -07 000000593 INF: FPGA: Recv ZSGSRD 29352
17-03-17 17:58:55.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:55.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:55.208 -07 000000561 INF: FPGA: Recv ZSGSRD 29350
17-03-17 17:58:55.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:55.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:55.218 -07 000000458 INF: FPGA: Recv ZSGSRD 29354
17-03-17 17:58:55.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:55.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:55.228 -07 000000623 INF: FPGA: Recv ZPIEZORD 24901
17-03-17 17:58:55.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:55.238 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.297 V. Piezo Error = -9.8 V.
17-03-17 17:58:55.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29354 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29354 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29349 (-128.1 uncal um), Max = 29359 (-128.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:58:55.238 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29354, posNoise = 5, negNoise = 5
17-03-17 17:58:55.238 -07 000000610 INF: Z Motor: After move to -0.128899, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:55.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:58:55.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:55.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:55.238 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:55.238 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:55.238 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:55.238 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:55.238 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:55.238 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:55.238 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:58:55.238 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:55.238 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:55.238 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:55.238 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:58:55.238 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:55.238 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:58:55.248 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:55.248 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:58:55.248 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:58:55.248 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:58:55.258 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:58:55.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28334 150\n [Camera]
17-03-17 17:58:55.458 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:55.848 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:58:55.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:58:55.848 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:55.848 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:55.848 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2378235720, 0x0, 391868352) start.
17-03-17 17:58:55.848 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:58:55.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:58:55.848 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:55.848 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:55.848 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:58:56.038 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28334 776
17-03-17 17:58:56.188 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:58:56.248 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2378235720, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 17:58:56.248 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:58:56.248 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:56.258 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 17:58:56.258 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 17:58:56.258 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:56.258 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:58:56.258 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 17:58:56.258 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:56.268 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 17:58:56.378 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:58:56.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:58:56.378 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:56.378 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:56.378 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 17:58:56.378 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:58:56.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:58:56.378 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:56.378 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:56.378 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 17:58:56.548 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:58:56.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:58:56.668 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 17:58:56.668 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:58:56.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28334 150' command took 2 ms to send, 1401 ms to get response, and 1409 ms overall
17-03-17 17:58:56.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:58:56.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.128899675220386. ------
17-03-17 17:58:56.668 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13498 mm
17-03-17 17:58:56.668 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:58:56.678 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:56.678 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 17:58:56.678 -07 000000458 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 17:58:56.678 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29486, sync = True, waitForSettling = False)
17-03-17 17:58:56.678 -07 000000627 INF: Z Motor: Moving to -0.134978 mm, started at -0.128900 mm, distance = -6.08 um
17-03-17 17:58:56.678 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:56.688 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:58:56.688 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:56.688 -07 000000480 INF: FPGA: Recv YRDPOS 146473
17-03-17 17:58:56.698 -07 000000627 INF: FPGA: Xmit ZDACW 29486\n [Z Motor]
17-03-17 17:58:56.698 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:58:56.698 -07 000000458 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:56.698 -07 000000458 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:58:56.698 -07 000000458 INF: Y Motor: Moving 1348 steps-27
17-03-17 17:58:56.698 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 17:58:56.708 -07 000000627 INF: FPGA: 'ZDACW 29486' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 17:58:56.708 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:58:56.718 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:58:56.728 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:56.728 -07 000000551 INF: FPGA: Recv ZDACR 29486
17-03-17 17:58:56.738 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:58:56.738 -07 000000627 INF: Z Motor: MoveAbsStepped took 59 ms (did NOT wait for settling yet))
17-03-17 17:58:56.768 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 17:58:56.768 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:58:56.768 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:56.778 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:58:56.778 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 17:58:56.778 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:58:56.778 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:56.778 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 17:58:56.778 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:58:56.778 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:58:56.908 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:58:56.908 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 17:58:56.988 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 4.020806,
17-03-17 17:58:57.088 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 17:58:57.088 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:58:57.128 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:57.128 -07 000000501 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:58:57.138 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:58:57.138 -07 000000458 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:57.138 -07 000000458 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 17:58:57.138 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 17:58:58.088 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:58:58.088 -07 000000561 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:58:58.098 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:58.098 -07 000000458 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:58:58.108 -07 000000458 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:58:58.108 -07 000000458 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:58:58.108 -07 000000458 INF: Y Motor: Moved to 72.3501 after 1438 ms (table move)
17-03-17 17:58:58.118 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134978 mm (DAC = 29486)
17-03-17 17:58:58.118 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:58.118 -07 000000409 INF: FPGA: Recv ZSGSRD 30304
17-03-17 17:58:58.128 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:58:58.128 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:58.128 -07 000000431 INF: FPGA: Recv ZSGSRD 30303
17-03-17 17:58:58.138 -07 000000459 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:58.138 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:58.138 -07 000000486 INF: FPGA: Recv ZSGSRD 30302
17-03-17 17:58:58.148 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:58.148 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:58.148 -07 000000576 INF: FPGA: Recv ZSGSRD 30298
17-03-17 17:58:58.158 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:58.158 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:58.158 -07 000000458 INF: FPGA: Recv ZSGSRD 30302
17-03-17 17:58:58.168 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:58.168 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:58.168 -07 000000501 INF: FPGA: Recv ZSGSRD 30304
17-03-17 17:58:58.178 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:58.178 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:58.178 -07 000000476 INF: FPGA: Recv ZSGSRD 30303
17-03-17 17:58:58.188 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:58.188 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:58.188 -07 000000561 INF: FPGA: Recv ZSGSRD 30304
17-03-17 17:58:58.198 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:58.198 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:58.198 -07 000000623 INF: FPGA: Recv ZSGSRD 30300
17-03-17 17:58:58.208 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:58.208 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:58.208 -07 000000409 INF: FPGA: Recv ZSGSRD 30300
17-03-17 17:58:58.218 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:58.218 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:58.218 -07 000000478 INF: FPGA: Recv ZPIEZORD 26157
17-03-17 17:58:58.228 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:58.228 -07 000000459 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.499 V. Piezo Error = -9.1 V.
17-03-17 17:58:58.228 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30302 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30302 (-134.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30298 (-134.2 uncal um), Max = 30304 (-134.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:58:58.228 -07 000000459 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30302, posNoise = 2, negNoise = 4
17-03-17 17:58:58.228 -07 000000459 INF: Z Motor: After move to -0.134978, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:58.228 -07 000000459 INF: Z Motor: Settle wait time = 1440 ms, measure time = 108 ms (allowed 150 ms), total time = 1548 ms
17-03-17 17:58:58.228 -07 000000459 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:58:58.278 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 17:58:58.278 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:58:58.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:58.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:58.278 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:58.278 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:58.278 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:58:58.278 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:58.278 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:58.278 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:58:58.288 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:58:58.288 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:58:58.298 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 17:58:58.298 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:58:58.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:58:58.338 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:58:58.538 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:58:58.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:58:58.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:58:58.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:58:58.578 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:58:58.578 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:58:58.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 17:58:58.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:58:58.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:58:58.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:58:58.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:58:58.778 -07 000000478 INF: Autofocus start
17-03-17 17:58:58.778 -07 000000478 INF: MeasureProfile start
17-03-17 17:58:58.778 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:58:58.778 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:58:58.788 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:58:58.788 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:58:58.788 -07 000000478 INF: MeasureProfile done
17-03-17 17:58:58.788 -07 000000478 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:58:58.788 -07 000000478 INF: Autofocus finished
17-03-17 17:58:58.988 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:58:58.988 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:58:58.988 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.134989828330776. ----------
17-03-17 17:58:58.988 -07 000000610 INF: Cycle	7	Tile	16	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:58:58.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27993, sync = True, waitForSettling = True)
17-03-17 17:58:58.998 -07 000000610 INF: Z Motor: Moving to -0.128144 mm, started at -0.134990 mm, distance = 6.85 um
17-03-17 17:58:58.998 -07 000000610 INF: FPGA: Xmit ZDACW 27993\n [Z Motor]
17-03-17 17:58:58.998 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:58:59.008 -07 000000610 INF: FPGA: 'ZDACW 27993' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:58:59.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:58:59.008 -07 000000551 INF: FPGA: Recv ZDACR 27993
17-03-17 17:58:59.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:59.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:58:59.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:59.168 -07 000000623 INF: FPGA: Recv ZSGSRD 29236
17-03-17 17:58:59.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:58:59.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:59.178 -07 000000458 INF: FPGA: Recv ZSGSRD 29241
17-03-17 17:58:59.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:59.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:59.188 -07 000000576 INF: FPGA: Recv ZSGSRD 29246
17-03-17 17:58:59.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:59.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:59.198 -07 000000551 INF: FPGA: Recv ZSGSRD 29234
17-03-17 17:58:59.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:59.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:59.208 -07 000000623 INF: FPGA: Recv ZSGSRD 29232
17-03-17 17:58:59.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:59.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:59.218 -07 000000482 INF: FPGA: Recv ZSGSRD 29241
17-03-17 17:58:59.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:59.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:59.228 -07 000000480 INF: FPGA: Recv ZSGSRD 29238
17-03-17 17:58:59.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:59.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:59.238 -07 000000501 INF: FPGA: Recv ZSGSRD 29237
17-03-17 17:58:59.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:59.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:59.348 -07 000000458 INF: FPGA: Recv ZSGSRD 29243
17-03-17 17:58:59.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 104 ms to send, 0 ms to get response, and 109 ms overall
17-03-17 17:58:59.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:58:59.358 -07 000000627 INF: FPGA: Recv ZSGSRD 29236
17-03-17 17:58:59.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:59.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:58:59.368 -07 000000593 INF: FPGA: Recv ZPIEZORD 24765
17-03-17 17:58:59.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:58:59.378 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -9.8 V.
17-03-17 17:58:59.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29238 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29238 (-127.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29232 (-127.3 uncal um), Max = 29246 (-127.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:58:59.378 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29238, posNoise = 8, negNoise = 6
17-03-17 17:58:59.378 -07 000000610 INF: Z Motor: After move to -0.128144, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:58:59.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 379 ms)
17-03-17 17:58:59.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:58:59.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:58:59.378 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:58:59.378 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:58:59.378 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:58:59.378 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:58:59.378 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:58:59.378 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:58:59.378 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:58:59.378 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:58:59.378 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:58:59.378 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:58:59.388 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:58:59.388 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:58:59.388 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:58:59.388 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:58:59.398 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:58:59.398 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:58:59.398 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 17:58:59.398 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:58:59.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28170 150\n [Camera]
17-03-17 17:58:59.598 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:58:59.988 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:58:59.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:58:59.998 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:58:59.998 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:58:59.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:58:59.998 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:58:59.998 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:58:59.998 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:58:59.998 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:58:59.998 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:59:00.188 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28170 776
17-03-17 17:59:00.338 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 17:59:00.398 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 17:59:00.398 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:59:00.398 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:00.398 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 17:59:00.398 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:59:00.398 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:00.398 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:59:00.398 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:59:00.398 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:59:00.408 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 17:59:00.528 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:59:00.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:59:00.528 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:59:00.528 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:59:00.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:59:00.528 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:59:00.528 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:59:00.528 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 17:59:00.538 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:59:00.538 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:59:00.718 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:59:00.718 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:59:00.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28170 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-17 17:59:00.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:59:00.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128154466611942. ------
17-03-17 17:59:00.718 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:59:00.718 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13473 mm
17-03-17 17:59:00.718 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:59:00.728 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:59:00.728 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:59:00.728 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 29432, sync = True, waitForSettling = False)
17-03-17 17:59:00.728 -07 000000409 INF: Z Motor: Moving to -0.134731 mm, started at -0.128154 mm, distance = -6.58 um
17-03-17 17:59:00.728 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:59:00.728 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 17:59:00.728 -07 000000459 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 17:59:00.838 -07 000000409 INF: FPGA: Xmit ZDACW 29432\n [Z Motor]
17-03-17 17:59:00.838 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 17:59:00.848 -07 000000409 INF: FPGA: 'ZDACW 29432' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-17 17:59:00.848 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:59:00.848 -07 000000627 INF: FPGA: Recv ZDACR 29432
17-03-17 17:59:00.858 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:59:00.858 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:00.858 -07 000000409 INF: Z Motor: MoveAbsStepped took 129 ms (did NOT wait for settling yet))
17-03-17 17:59:00.858 -07 000000458 INF: FPGA: Recv YRDPOS 148174
17-03-17 17:59:00.868 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:59:00.868 -07 000000459 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:59:00.868 -07 000000459 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:59:00.868 -07 000000459 INF: Y Motor: Moving 1347 steps-26
17-03-17 17:59:00.868 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:59:00.928 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:59:00.928 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 90 ms to get response, and 202 ms overall
17-03-17 17:59:00.928 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 17:59:00.928 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:59:00.928 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:00.928 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 17:59:00.928 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:59:00.928 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:00.938 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:59:00.938 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 17:59:00.938 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:59:00.948 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 17:59:01.248 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 17:59:01.248 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 373 ms to get response, and 379 ms overall
17-03-17 17:59:01.278 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:59:01.288 -07 000000501 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:59:01.288 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:59:01.288 -07 000000459 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:59:01.288 -07 000000459 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 17:59:01.288 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.843 mm, average velocity = 2.223 mm/sec
17-03-17 17:59:01.548 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:59:01.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:59:02.238 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:59:02.238 -07 000000551 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:59:02.248 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:59:02.248 -07 000000459 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:59:02.258 -07 000000459 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:59:02.258 -07 000000459 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:59:02.258 -07 000000459 INF: Y Motor: Moved to 73.1763 after 1537 ms (table move)
17-03-17 17:59:02.268 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134731 mm (DAC = 29432)
17-03-17 17:59:02.268 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:02.268 -07 000000480 INF: FPGA: Recv ZSGSRD 30264
17-03-17 17:59:02.278 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:59:02.278 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:02.278 -07 000000561 INF: FPGA: Recv ZSGSRD 30259
17-03-17 17:59:02.288 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:02.288 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:02.288 -07 000000482 INF: FPGA: Recv ZSGSRD 30258
17-03-17 17:59:02.298 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:02.298 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:02.298 -07 000000409 INF: FPGA: Recv ZSGSRD 30262
17-03-17 17:59:02.308 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:02.308 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:02.308 -07 000000476 INF: FPGA: Recv ZSGSRD 30263
17-03-17 17:59:02.318 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:02.318 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:02.318 -07 000000627 INF: FPGA: Recv ZSGSRD 30268
17-03-17 17:59:02.328 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:02.328 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:02.328 -07 000000576 INF: FPGA: Recv ZSGSRD 30266
17-03-17 17:59:02.338 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:02.348 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:02.348 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.986717,
17-03-17 17:59:02.348 -07 000000409 INF: FPGA: Recv ZSGSRD 30260
17-03-17 17:59:02.358 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:59:02.358 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:02.358 -07 000000433 INF: FPGA: Recv ZSGSRD 30256
17-03-17 17:59:02.368 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:02.388 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:02.388 -07 000000486 INF: FPGA: Recv ZSGSRD 30270
17-03-17 17:59:02.398 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:59:02.398 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:59:02.398 -07 000000627 INF: FPGA: Recv ZPIEZORD 26183
17-03-17 17:59:02.408 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:02.408 -07 000000478 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.491 V. Piezo Error = -9.0 V.
17-03-17 17:59:02.408 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30263 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30262 (-133.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30256 (-133.9 uncal um), Max = 30270 (-134.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:59:02.408 -07 000000478 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30263, posNoise = 7, negNoise = 7
17-03-17 17:59:02.408 -07 000000478 INF: Z Motor: After move to -0.134731, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:59:02.408 -07 000000478 INF: Z Motor: Settle wait time = 1542 ms, measure time = 137 ms (allowed 150 ms), total time = 1679 ms
17-03-17 17:59:02.408 -07 000000478 INF: Z Motor: Waiting extra 13 ms after reading position to reach expected total of 150 ms
17-03-17 17:59:02.428 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1702 ms
17-03-17 17:59:02.428 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:59:02.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:59:02.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:59:02.428 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:59:02.428 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:59:02.428 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:59:02.428 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:59:02.428 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:59:02.428 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:59:02.438 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:59:02.438 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:59:02.448 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 17:59:02.448 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:59:02.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:59:02.498 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:59:02.698 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:59:02.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:59:02.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:59:02.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:59:02.728 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:59:02.738 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 17:59:02.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 17:59:02.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 17:59:02.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:02.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:59:02.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 17:59:02.838 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:59:02.838 -07 000000593 INF: Autofocus start
17-03-17 17:59:02.838 -07 000000593 INF: MeasureProfile start
17-03-17 17:59:02.838 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:59:02.848 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:59:02.848 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:59:02.848 -07 000000593 INF: MeasureProfile done
17-03-17 17:59:02.848 -07 000000593 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:59:02.848 -07 000000593 INF: Autofocus finished
17-03-17 17:59:03.048 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:59:03.048 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:59:03.048 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134739284057247. ----------
17-03-17 17:59:03.048 -07 000000610 INF: Cycle	7	Tile	17	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:59:03.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27956, sync = True, waitForSettling = True)
17-03-17 17:59:03.058 -07 000000610 INF: Z Motor: Moving to -0.127974 mm, started at -0.134739 mm, distance = 6.76 um
17-03-17 17:59:03.058 -07 000000610 INF: FPGA: Xmit ZDACW 27956\n [Z Motor]
17-03-17 17:59:03.058 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 17:59:03.068 -07 000000610 INF: FPGA: 'ZDACW 27956' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:03.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:59:03.068 -07 000000480 INF: FPGA: Recv ZDACR 27956
17-03-17 17:59:03.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:03.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:59:03.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:03.228 -07 000000459 INF: FPGA: Recv ZSGSRD 29208
17-03-17 17:59:03.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:59:03.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:03.238 -07 000000593 INF: FPGA: Recv ZSGSRD 29209
17-03-17 17:59:03.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:03.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:03.248 -07 000000486 INF: FPGA: Recv ZSGSRD 29210
17-03-17 17:59:03.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:03.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:03.258 -07 000000431 INF: FPGA: Recv ZSGSRD 29211
17-03-17 17:59:03.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:03.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:03.268 -07 000000501 INF: FPGA: Recv ZSGSRD 29210
17-03-17 17:59:03.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:03.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:03.278 -07 000000561 INF: FPGA: Recv ZSGSRD 29216
17-03-17 17:59:03.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:03.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:03.288 -07 000000480 INF: FPGA: Recv ZSGSRD 29208
17-03-17 17:59:03.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:03.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:03.298 -07 000000486 INF: FPGA: Recv ZSGSRD 29202
17-03-17 17:59:03.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:03.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:03.308 -07 000000501 INF: FPGA: Recv ZSGSRD 29216
17-03-17 17:59:03.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:03.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:03.318 -07 000000501 INF: FPGA: Recv ZSGSRD 29210
17-03-17 17:59:03.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:03.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:59:03.328 -07 000000593 INF: FPGA: Recv ZPIEZORD 24753
17-03-17 17:59:03.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:03.338 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.266 V. Piezo Error = -9.8 V.
17-03-17 17:59:03.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29210 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29210 (-127.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29202 (-127.1 uncal um), Max = 29216 (-127.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:59:03.338 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29210, posNoise = 6, negNoise = 8
17-03-17 17:59:03.338 -07 000000610 INF: Z Motor: After move to -0.127974, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:59:03.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:59:03.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:59:03.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:59:03.338 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:59:03.338 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:59:03.338 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:59:03.338 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:59:03.338 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:59:03.338 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:59:03.338 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:59:03.338 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:59:03.338 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:59:03.338 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:59:03.348 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:59:03.348 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:59:03.348 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:59:03.348 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:59:03.358 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:59:03.358 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:59:03.358 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:59:03.358 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:59:03.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28133 150\n [Camera]
17-03-17 17:59:03.558 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:59:03.948 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:59:03.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:59:03.948 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:59:03.948 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:59:03.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:59:03.948 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:59:03.958 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:59:03.958 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:59:03.958 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:59:03.958 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:59:04.138 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28133 776
17-03-17 17:59:04.288 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:59:04.348 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 17:59:04.348 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:59:04.348 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:04.358 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 17:59:04.358 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:59:04.358 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:04.358 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:59:04.358 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 17:59:04.358 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:59:04.368 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 17:59:04.478 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:59:04.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:59:04.478 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:59:04.478 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:59:04.478 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 17:59:04.478 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:59:04.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:59:04.478 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:59:04.478 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:59:04.478 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 17:59:04.678 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 17:59:04.678 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:59:04.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28133 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-17 17:59:04.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:59:04.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127974588671973. ------
17-03-17 17:59:04.678 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:59:04.678 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13434 mm
17-03-17 17:59:04.678 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:59:04.688 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 17:59:04.688 -07 000000623 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 17:59:04.688 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:59:04.688 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:59:04.688 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:59:04.688 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29347, sync = True, waitForSettling = False)
17-03-17 17:59:04.688 -07 000000431 INF: Z Motor: Moving to -0.134342 mm, started at -0.127975 mm, distance = -6.37 um
17-03-17 17:59:04.688 -07 000000627 INF: FPGA: Recv YRDPOS 149866
17-03-17 17:59:04.698 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:59:04.698 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:59:04.698 -07 000000623 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:59:04.698 -07 000000623 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:59:04.698 -07 000000623 INF: Y Motor: Moving 1353 steps-33
17-03-17 17:59:04.708 -07 000000431 INF: FPGA: Xmit ZDACW 29347\n [Z Motor]
17-03-17 17:59:04.708 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:59:04.718 -07 000000431 INF: FPGA: 'ZDACW 29347' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 17:59:04.718 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:59:04.728 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:59:04.728 -07 000000551 INF: FPGA: Recv ZDACR 29347
17-03-17 17:59:04.738 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:59:04.738 -07 000000431 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 17:59:04.888 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 17:59:04.888 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 17:59:04.888 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:04.888 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 17:59:04.888 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 17:59:04.888 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:04.898 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:59:04.898 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:59:04.898 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 17:59:04.898 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 11 ms.
17-03-17 17:59:04.898 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-17 17:59:04.898 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 17:59:05.088 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 17:59:05.088 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 17:59:05.118 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:59:05.118 -07 000000501 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:59:05.128 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:59:05.128 -07 000000623 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:59:05.128 -07 000000623 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:59:05.128 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.846 mm, average velocity = 2.143 mm/sec
17-03-17 17:59:06.078 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:59:06.078 -07 000000627 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:59:06.088 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:59:06.088 -07 000000623 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:59:06.098 -07 000000623 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:59:06.098 -07 000000623 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:59:06.098 -07 000000623 INF: Y Motor: Moved to 74.0088 after 1413 ms (table move)
17-03-17 17:59:06.098 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134342 mm (DAC = 29347)
17-03-17 17:59:06.098 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:06.108 -07 000000478 INF: FPGA: Recv ZSGSRD 30210
17-03-17 17:59:06.108 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:59:06.108 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:06.108 -07 000000480 INF: FPGA: Recv ZSGSRD 30198
17-03-17 17:59:06.118 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:06.118 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:06.118 -07 000000458 INF: FPGA: Recv ZSGSRD 30198
17-03-17 17:59:06.128 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:06.128 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:06.128 -07 000000476 INF: FPGA: Recv ZSGSRD 30204
17-03-17 17:59:06.138 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:06.138 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:06.138 -07 000000459 INF: FPGA: Recv ZSGSRD 30203
17-03-17 17:59:06.148 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:06.148 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:06.148 -07 000000627 INF: FPGA: Recv ZSGSRD 30208
17-03-17 17:59:06.158 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:06.158 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:06.158 -07 000000482 INF: FPGA: Recv ZSGSRD 30200
17-03-17 17:59:06.168 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:06.168 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:06.168 -07 000000623 INF: FPGA: Recv ZSGSRD 30209
17-03-17 17:59:06.178 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:06.178 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:06.178 -07 000000478 INF: FPGA: Recv ZSGSRD 30207
17-03-17 17:59:06.188 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:06.188 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:06.188 -07 000000458 INF: FPGA: Recv ZSGSRD 30198
17-03-17 17:59:06.198 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:06.198 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:59:06.198 -07 000000551 INF: FPGA: Recv ZPIEZORD 26096
17-03-17 17:59:06.208 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:06.208 -07 000000486 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.478 V. Piezo Error = -9.0 V.
17-03-17 17:59:06.208 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30204 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30204 (-133.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30198 (-133.5 uncal um), Max = 30210 (-133.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:59:06.208 -07 000000486 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30204, posNoise = 6, negNoise = 6
17-03-17 17:59:06.208 -07 000000486 INF: Z Motor: After move to -0.134342, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:59:06.208 -07 000000486 INF: Z Motor: Settle wait time = 1415 ms, measure time = 104 ms (allowed 150 ms), total time = 1519 ms
17-03-17 17:59:06.208 -07 000000486 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 17:59:06.258 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1571 ms
17-03-17 17:59:06.258 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:59:06.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:59:06.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:59:06.258 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:59:06.258 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:59:06.258 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:59:06.258 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:59:06.258 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:59:06.258 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:59:06.268 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:59:06.268 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:59:06.278 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:59:06.278 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:59:06.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:59:06.328 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:59:06.528 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:59:06.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:59:06.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:59:06.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-17 17:59:06.548 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:59:06.568 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:59:06.568 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 17:59:06.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 17:59:06.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 17:59:06.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:06.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:59:06.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 17:59:06.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:59:06.668 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:59:06.668 -07 000000551 INF: Autofocus start
17-03-17 17:59:06.668 -07 000000551 INF: MeasureProfile start
17-03-17 17:59:06.678 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:59:06.678 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:59:06.678 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:59:06.678 -07 000000551 INF: MeasureProfile done
17-03-17 17:59:06.678 -07 000000551 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:59:06.678 -07 000000551 INF: Autofocus finished
17-03-17 17:59:06.878 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:59:06.878 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:59:06.878 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134360255540883. ----------
17-03-17 17:59:06.878 -07 000000610 INF: Cycle	7	Tile	18	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:59:06.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27871, sync = True, waitForSettling = True)
17-03-17 17:59:06.888 -07 000000610 INF: Z Motor: Moving to -0.127585 mm, started at -0.134360 mm, distance = 6.77 um
17-03-17 17:59:06.888 -07 000000610 INF: FPGA: Xmit ZDACW 27871\n [Z Motor]
17-03-17 17:59:06.888 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:59:06.898 -07 000000610 INF: FPGA: 'ZDACW 27871' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:06.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:59:06.898 -07 000000593 INF: FPGA: Recv ZDACR 27871
17-03-17 17:59:06.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:06.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:59:07.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:07.058 -07 000000431 INF: FPGA: Recv ZSGSRD 29156
17-03-17 17:59:07.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:59:07.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:07.068 -07 000000486 INF: FPGA: Recv ZSGSRD 29152
17-03-17 17:59:07.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:07.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:07.078 -07 000000482 INF: FPGA: Recv ZSGSRD 29150
17-03-17 17:59:07.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:07.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:07.088 -07 000000476 INF: FPGA: Recv ZSGSRD 29151
17-03-17 17:59:07.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:07.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:07.098 -07 000000433 INF: FPGA: Recv ZSGSRD 29153
17-03-17 17:59:07.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:07.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:07.108 -07 000000458 INF: FPGA: Recv ZSGSRD 29154
17-03-17 17:59:07.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:07.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:07.118 -07 000000623 INF: FPGA: Recv ZSGSRD 29147
17-03-17 17:59:07.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:07.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:07.128 -07 000000476 INF: FPGA: Recv ZSGSRD 29154
17-03-17 17:59:07.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:07.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:07.138 -07 000000433 INF: FPGA: Recv ZSGSRD 29148
17-03-17 17:59:07.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:07.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:07.148 -07 000000486 INF: FPGA: Recv ZSGSRD 29151
17-03-17 17:59:07.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:07.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:59:07.158 -07 000000623 INF: FPGA: Recv ZPIEZORD 24686
17-03-17 17:59:07.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:07.168 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.253 V. Piezo Error = -9.8 V.
17-03-17 17:59:07.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29152 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29152 (-126.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29147 (-126.8 uncal um), Max = 29156 (-126.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:59:07.168 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29152, posNoise = 4, negNoise = 5
17-03-17 17:59:07.168 -07 000000610 INF: Z Motor: After move to -0.127585, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:59:07.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:59:07.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:59:07.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:59:07.168 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:59:07.168 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:59:07.168 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:59:07.168 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:59:07.168 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:59:07.168 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:59:07.168 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:59:07.168 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:59:07.168 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:59:07.168 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:59:07.178 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:59:07.178 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:59:07.178 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 17:59:07.178 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:59:07.188 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 17:59:07.188 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:59:07.188 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 17:59:07.188 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:59:07.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28048 150\n [Camera]
17-03-17 17:59:07.398 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:59:07.748 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.990831,
17-03-17 17:59:07.788 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:59:07.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:59:07.788 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:59:07.788 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:59:07.788 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-17 17:59:07.788 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:59:07.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:59:07.788 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:59:07.788 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:59:07.788 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:59:07.978 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28048 776
17-03-17 17:59:08.128 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:59:08.188 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 17:59:08.188 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:59:08.188 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:08.188 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 17:59:08.188 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 17:59:08.188 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:08.188 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:59:08.188 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 17:59:08.198 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:59:08.198 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 17:59:08.318 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:59:08.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:59:08.318 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:59:08.318 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:59:08.318 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 17:59:08.318 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:59:08.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:59:08.318 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:59:08.318 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:59:08.318 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 17:59:08.508 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:59:08.508 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:59:08.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28048 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-17 17:59:08.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:59:08.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.12760198436775. ------
17-03-17 17:59:08.508 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:59:08.508 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13388 mm
17-03-17 17:59:08.508 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:59:08.518 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:59:08.518 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:59:08.518 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 17:59:08.518 -07 000000478 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 17:59:08.518 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29245, sync = True, waitForSettling = False)
17-03-17 17:59:08.518 -07 000000623 INF: Z Motor: Moving to -0.133875 mm, started at -0.127602 mm, distance = -6.27 um
17-03-17 17:59:08.518 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:59:08.528 -07 000000623 INF: FPGA: Xmit ZDACW 29245\n [Z Motor]
17-03-17 17:59:08.648 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:59:08.648 -07 000000623 INF: FPGA: 'ZDACW 29245' command took 117 ms to send, 0 ms to get response, and 127 ms overall
17-03-17 17:59:08.648 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:59:08.648 -07 000000480 INF: FPGA: Recv ZDACR 29245
17-03-17 17:59:08.658 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:08.658 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:59:08.658 -07 000000623 INF: Z Motor: MoveAbsStepped took 137 ms (did NOT wait for settling yet))
17-03-17 17:59:08.658 -07 000000409 INF: FPGA: Recv YRDPOS 151571
17-03-17 17:59:08.668 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 147 ms overall
17-03-17 17:59:08.668 -07 000000478 INF: Y Motor: Encoder = 151571 = motor step 118414.8 = 74.0093 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:59:08.668 -07 000000478 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:59:08.668 -07 000000478 INF: Y Motor: Moving 1349 steps-28
17-03-17 17:59:08.668 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:59:08.708 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 17:59:08.708 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:59:08.708 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:08.718 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 17:59:08.718 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:59:08.718 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:08.718 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:59:08.718 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:59:08.718 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 17:59:08.718 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:59:08.728 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:59:08.728 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 17:59:09.048 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 17:59:09.048 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 381 ms overall
17-03-17 17:59:09.068 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:59:09.078 -07 000000627 INF: FPGA: Recv YRDPOS 153257
17-03-17 17:59:09.078 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 17:59:09.078 -07 000000478 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:59:09.078 -07 000000478 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 17:59:09.078 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.215 mm/sec
17-03-17 17:59:10.028 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:59:10.028 -07 000000433 INF: FPGA: Recv YRDPOS 153257
17-03-17 17:59:10.038 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:10.038 -07 000000478 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:59:10.048 -07 000000478 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:59:10.048 -07 000000478 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:59:10.048 -07 000000478 INF: Y Motor: Moved to 74.8325 after 1532 ms (table move)
17-03-17 17:59:10.048 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133875 mm (DAC = 29245)
17-03-17 17:59:10.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:10.058 -07 000000501 INF: FPGA: Recv ZSGSRD 30141
17-03-17 17:59:10.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:59:10.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:10.058 -07 000000459 INF: FPGA: Recv ZSGSRD 30128
17-03-17 17:59:10.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:59:10.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:10.068 -07 000000433 INF: FPGA: Recv ZSGSRD 30126
17-03-17 17:59:10.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:10.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:10.078 -07 000000480 INF: FPGA: Recv ZSGSRD 30134
17-03-17 17:59:10.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:10.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:10.088 -07 000000476 INF: FPGA: Recv ZSGSRD 30136
17-03-17 17:59:10.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:10.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:10.098 -07 000000478 INF: FPGA: Recv ZSGSRD 30130
17-03-17 17:59:10.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:10.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:10.108 -07 000000486 INF: FPGA: Recv ZSGSRD 30130
17-03-17 17:59:10.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:10.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:10.118 -07 000000480 INF: FPGA: Recv ZSGSRD 30127
17-03-17 17:59:10.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:10.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:10.128 -07 000000476 INF: FPGA: Recv ZSGSRD 30125
17-03-17 17:59:10.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:10.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:10.138 -07 000000478 INF: FPGA: Recv ZSGSRD 30129
17-03-17 17:59:10.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:10.148 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:59:10.148 -07 000000476 INF: FPGA: Recv ZPIEZORD 26007
17-03-17 17:59:10.158 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:59:10.158 -07 000000431 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.463 V. Piezo Error = -9.1 V.
17-03-17 17:59:10.158 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30131 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30130 (-133.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30125 (-133.1 uncal um), Max = 30141 (-133.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:59:10.158 -07 000000431 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30131, posNoise = 10, negNoise = 6
17-03-17 17:59:10.158 -07 000000431 INF: Z Motor: After move to -0.133875, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:59:10.158 -07 000000431 INF: Z Motor: Settle wait time = 1535 ms, measure time = 102 ms (allowed 150 ms), total time = 1637 ms
17-03-17 17:59:10.158 -07 000000431 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 17:59:10.208 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1690 ms
17-03-17 17:59:10.208 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:59:10.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:59:10.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:59:10.208 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:59:10.208 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:59:10.208 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:59:10.208 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:59:10.208 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:59:10.208 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:59:10.218 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:59:10.218 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:59:10.218 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:59:10.228 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:59:10.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:59:10.278 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:59:10.468 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:59:10.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:59:10.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:59:10.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:59:10.508 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:59:10.508 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 17:59:10.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 17:59:10.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 17:59:10.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:10.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:59:10.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 17:59:10.708 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:59:10.708 -07 000000476 INF: Autofocus start
17-03-17 17:59:10.708 -07 000000476 INF: MeasureProfile start
17-03-17 17:59:10.708 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:59:10.718 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:59:10.718 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:59:10.718 -07 000000476 INF: MeasureProfile done
17-03-17 17:59:10.718 -07 000000476 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:59:10.718 -07 000000476 INF: Autofocus finished
17-03-17 17:59:10.918 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:59:10.918 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:59:10.918 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.133891288054534. ----------
17-03-17 17:59:10.918 -07 000000610 INF: Cycle	7	Tile	19	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 17:59:10.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27769, sync = True, waitForSettling = True)
17-03-17 17:59:10.918 -07 000000610 INF: Z Motor: Moving to -0.127118 mm, started at -0.133891 mm, distance = 6.77 um
17-03-17 17:59:10.928 -07 000000610 INF: FPGA: Xmit ZDACW 27769\n [Z Motor]
17-03-17 17:59:10.928 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:59:10.938 -07 000000610 INF: FPGA: 'ZDACW 27769' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:59:10.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:59:10.938 -07 000000576 INF: FPGA: Recv ZDACR 27769
17-03-17 17:59:10.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:10.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:59:11.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:11.098 -07 000000486 INF: FPGA: Recv ZSGSRD 29077
17-03-17 17:59:11.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:11.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:11.108 -07 000000627 INF: FPGA: Recv ZSGSRD 29081
17-03-17 17:59:11.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:11.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:11.118 -07 000000501 INF: FPGA: Recv ZSGSRD 29084
17-03-17 17:59:11.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:11.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:11.128 -07 000000593 INF: FPGA: Recv ZSGSRD 29073
17-03-17 17:59:11.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:11.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:11.138 -07 000000486 INF: FPGA: Recv ZSGSRD 29079
17-03-17 17:59:11.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:11.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:11.148 -07 000000627 INF: FPGA: Recv ZSGSRD 29082
17-03-17 17:59:11.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:11.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:11.158 -07 000000478 INF: FPGA: Recv ZSGSRD 29073
17-03-17 17:59:11.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:11.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:11.168 -07 000000459 INF: FPGA: Recv ZSGSRD 29077
17-03-17 17:59:11.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:11.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:11.178 -07 000000433 INF: FPGA: Recv ZSGSRD 29074
17-03-17 17:59:11.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:11.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:59:11.188 -07 000000627 INF: FPGA: Recv ZSGSRD 29086
17-03-17 17:59:11.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:11.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:59:11.198 -07 000000480 INF: FPGA: Recv ZPIEZORD 24627
17-03-17 17:59:11.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:11.208 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.237 V. Piezo Error = -9.8 V.
17-03-17 17:59:11.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.1 um, Read 10 ADC samples: Avg = 29079 (-126.4 uncal um), Error = 0.8 uncal um, Median = 29078 (-126.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29073 (-126.3 uncal um), Max = 29086 (-126.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:59:11.208 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29079, posNoise = 7, negNoise = 6
17-03-17 17:59:11.208 -07 000000610 INF: Z Motor: After move to -0.127118, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:59:11.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:59:11.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:59:11.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:59:11.208 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:59:11.208 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:59:11.208 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:59:11.208 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:59:11.208 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:59:11.208 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:59:11.208 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:59:11.208 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:59:11.208 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:59:11.208 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:59:11.218 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:59:11.218 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:59:11.218 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:59:11.218 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:59:11.228 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:59:11.228 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:59:11.228 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 17:59:11.228 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 17:59:11.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 27946 150\n [Camera]
17-03-17 17:59:11.438 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:59:11.548 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:59:11.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 6. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:59:11.828 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:59:11.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:59:11.828 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:59:11.828 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:59:11.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:59:11.828 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:59:11.828 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:59:11.828 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:59:11.828 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:59:11.838 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:59:12.018 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27946 776
17-03-17 17:59:12.168 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:59:12.228 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 17:59:12.228 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:59:12.228 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:12.228 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 17:59:12.228 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:59:12.228 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:12.228 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:59:12.228 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:59:12.228 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:59:12.238 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 17:59:12.358 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:59:12.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:59:12.358 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:59:12.358 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:59:12.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:59:12.358 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:59:12.368 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:59:12.368 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 17:59:12.368 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:59:12.368 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:59:12.548 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:59:12.548 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:59:12.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 27946 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 17:59:12.768 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 17:59:12.768 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 17:59:12.768 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:12.768 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:59:12.768 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 17:59:12.768 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 17:59:12.768 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 17:59:12.768 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 17:59:12.768 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:59:12.778 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:59:12.788 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 423 ms.
17-03-17 17:59:12.808 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 17:59:12.808 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 17:59:12.858 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 17:59:12.998 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-17 17:59:12.998 -07 000000610 INF: Imaging Cycle 7: ScanTilesCommand Cycle 7 time end. Duration was 162826 ms.
17-03-17 17:59:12.998 -07 000000610 INF: =================== Cycle #7 ===================
17-03-17 17:59:12.998 -07 000000610 INF: ===================  ===================
17-03-17 17:59:13.008 -07 000000623 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 17:59:13.008 -07 000000478 INF: FPGA: Recv EXLED1ADCR 28
17-03-17 17:59:13.008 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.
17-03-17 17:59:13.018 -07 000000623 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:13.018 -07 000000623 INF: GreenLED: Using Green data: Photodiode ADC 28 --> 0.0 mW (old method), or 2.1 mW (new method). Difference = 2.1 mW
17-03-17 17:59:13.018 -07 000000623 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 7, FrontChillerTemperature: 3.99219, FrontChillerHeatSinkTemperature: 0.3556, AmbientTemperature: 18.71991, FlowCellCompartmentTemperature: 21.98817, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.46645, GreenLEDSensorTemperature: 25.97433, PhotodiodePowerAdcGreen: 28, PhotodiodePowerMwGreen: 2.10942