17-03-17 23:54:26.088 -07 000000610 INF: =================== Cycle #80 ===================
17-03-17 23:54:26.088 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 23:54:26.088 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-17 23:54:26.088 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:54:26.088 -07 000000409 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:54:26.098 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:54:26.098 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:54:26.098 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 23:54:26.098 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 23:54:26.098 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 23:54:26.208 -07 000000547 INF: FPGA: Recv YMVTO 154377 872
17-03-17 23:54:26.208 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 116 ms overall
17-03-17 23:54:26.208 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 23:54:26.208 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 23:54:26.208 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.729 mm/sec
17-03-17 23:54:27.108 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:54:27.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:54:29.208 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:54:29.208 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.043918,
17-03-17 23:54:29.208 -07 000000501 INF: FPGA: Recv YRDPOS 154380
17-03-17 23:54:29.218 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:29.218 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:54:29.228 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:54:29.228 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 23:54:29.228 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3142 ms
17-03-17 23:54:29.238 -07 000000610 INF: =================== Cycle #80, Flow Cell Temp 60° ===================
17-03-17 23:54:29.238 -07 000000610 INF: =================== Cycle #80, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 23:54:29.258 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 23:54:29.258 -07 000000409 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:54:29.268 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:54:29.268 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:54:29.268 -07 000000448 INF: FPGA: Recv TEC2EN 
17-03-17 23:54:29.278 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:54:29.278 -07 000000610 INF: =================== Cycle #80, Flow Cell Temp 60° ===================
17-03-17 23:54:29.278 -07 000000610 INF: =================== Cycle #80 ===================
17-03-17 23:54:29.278 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:54:29.278 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:54:29.308 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:54:29.308 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 23:54:29.308 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:54:29.608 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:54:29.628 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:54:29.628 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:54:29.678 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:54:29.698 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:54:29.698 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:54:29.798 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3) ===================
17-03-17 23:54:29.798 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:54:29.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:54:29.828 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:54:29.828 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:54:29.828 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:54:29.958 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:54:29.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:54:32.108 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:54:32.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:54:33.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:54:33.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:54:33.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:54:33.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:54:34.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:54:34.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:54:34.058 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:54:34.058 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3) ===================
17-03-17 23:54:34.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:54:34.218 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:54:34.218 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:54:34.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:54:34.378 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:54:34.378 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:54:34.378 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:54:34.508 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:54:34.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:54:34.578 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.015368,
17-03-17 23:54:34.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:54:34.998 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:54:34.998 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:54:34.998 -07 000000610 INF: =================== Cycle #80 ===================
17-03-17 23:54:36.218 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:54:36.218 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 23:54:36.218 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:54:36.238 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:54:36.238 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 23:54:36.238 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 23:54:36.368 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:54:36.388 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 23:54:36.388 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 23:54:36.438 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:54:36.458 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:54:36.458 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:54:36.558 -07 000000610 INF: =================== Cycle #80, Pumping Reagent CMS (4) ===================
17-03-17 23:54:36.558 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:54:36.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:54:36.588 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:54:36.588 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:54:36.588 -07 000000610 INF: =================== Cycle #80, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 23:54:36.718 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:54:36.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:54:37.108 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:54:37.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1275, R2=1326, Total=2601. Warn if over 250 bubbles per interval.
17-03-17 23:54:38.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:54:38.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:54:38.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:54:38.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:54:38.678 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:54:38.678 -07 000000610 INF: =================== Cycle #80, Pumping Reagent CMS (4) ===================
17-03-17 23:54:38.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:54:38.838 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:54:38.838 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:54:38.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:54:38.998 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:54:38.998 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:54:38.998 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:54:39.128 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:54:39.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:54:39.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:54:39.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:54:39.618 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:54:39.618 -07 000000610 INF: =================== Cycle #80 ===================
17-03-17 23:54:40.528 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.009895,
17-03-17 23:54:40.838 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 23:54:40.838 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:54:40.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:54:40.858 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:54:40.858 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 23:54:40.858 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 23:54:41.008 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:54:41.028 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 23:54:41.028 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 23:54:41.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:54:41.098 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:54:41.098 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:54:41.198 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3) ===================
17-03-17 23:54:41.198 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:54:41.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:54:41.228 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:54:41.228 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:54:41.228 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:54:41.358 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:54:41.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:54:42.108 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 6
17-03-17 23:54:42.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=6, R2=5, Total=11. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1281, R2=1331, Total=2612. Warn if over 250 bubbles per interval.
17-03-17 23:54:42.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:54:42.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:54:42.298 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:54:42.298 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3) ===================
17-03-17 23:54:42.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:54:42.458 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:54:42.458 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:54:42.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:54:42.618 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:54:42.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:54:42.618 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:54:42.748 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:54:42.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:54:43.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:54:43.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:54:43.238 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:54:43.238 -07 000000610 INF: =================== Cycle #80 ===================
17-03-17 23:54:43.238 -07 000000429 INF: WaitCommand(10000) start
17-03-17 23:54:43.238 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:54:43.238 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:54:44.458 -07 000000512 INF: AsyncDelayTimer waited 1216ms
17-03-17 23:54:44.458 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-17 23:54:44.488 -07 000000512 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:54:44.488 -07 000000512 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:54:44.618 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:54:44.658 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:54:45.908 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.974486,
17-03-17 23:54:46.188 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-17 23:54:46.218 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:54:46.638 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-17 23:54:46.668 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:54:46.668 -07 000000512 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 23:54:46.668 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:54:46.668 -07 000000512 INF: ===================  ===================
17-03-17 23:54:47.108 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 23:54:47.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1283, R2=1333, Total=2616. Warn if over 250 bubbles per interval.
17-03-17 23:54:52.108 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:54:52.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1283, R2=1333, Total=2616. Warn if over 250 bubbles per interval.
17-03-17 23:54:52.238 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.979922,
17-03-17 23:54:53.248 -07 000000429 INF: WaitCommand(10000) end
17-03-17 23:54:53.248 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3) ===================
17-03-17 23:54:53.248 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 23:54:53.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:54:53.278 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:54:53.278 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:54:53.278 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:54:53.408 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 23:54:53.448 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:54:57.108 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 1
17-03-17 23:54:57.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=1, R2=3, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1284, R2=1336, Total=2620. Warn if over 250 bubbles per interval.
17-03-17 23:54:57.618 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.030322,
17-03-17 23:54:59.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:54:59.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:55:00.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:55:00.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:55:00.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:55:00.508 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:55:00.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:55:00.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:55:01.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:55:01.408 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:55:01.408 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 23:55:01.408 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3) ===================
17-03-17 23:55:01.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:55:01.568 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:55:01.568 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:55:01.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:55:01.728 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:55:01.728 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:55:01.728 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:55:01.858 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:55:01.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:55:02.108 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 23:55:02.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1285, R2=1337, Total=2622. Warn if over 250 bubbles per interval.
17-03-17 23:55:02.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:55:02.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:55:02.348 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:55:02.348 -07 000000610 INF: =================== Cycle #80 ===================
17-03-17 23:55:02.978 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.033041,
17-03-17 23:55:03.568 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:55:03.568 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 23:55:03.568 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:55:03.588 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:55:03.588 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 23:55:03.588 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 23:55:03.798 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:55:03.818 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 23:55:03.818 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 23:55:03.868 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:55:03.888 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:55:03.888 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:55:03.988 -07 000000610 INF: =================== Cycle #80, Pumping Reagent IMT (1) ===================
17-03-17 23:55:03.988 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:55:03.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:55:04.018 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:55:04.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:55:04.018 -07 000000610 INF: =================== Cycle #80, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 23:55:04.148 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:55:04.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:55:05.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:55:05.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:55:06.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:55:06.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:55:06.108 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:55:06.108 -07 000000610 INF: =================== Cycle #80, Pumping Reagent IMT (1) ===================
17-03-17 23:55:06.238 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:55:06.678 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:55:06.678 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:55:06.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:55:06.838 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:55:06.838 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:55:06.838 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:55:06.968 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:55:06.998 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:55:07.118 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 23:55:07.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1286, R2=1337, Total=2623. Warn if over 250 bubbles per interval.
17-03-17 23:55:07.428 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:55:07.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:55:07.458 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:55:07.458 -07 000000610 INF: =================== Cycle #80 ===================
17-03-17 23:55:08.348 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.02213,
17-03-17 23:55:08.678 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:55:08.678 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:55:08.678 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:55:08.698 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:55:08.698 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 23:55:08.698 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:55:08.928 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:55:08.948 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 23:55:08.948 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 23:55:08.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:55:09.018 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:55:09.018 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:55:09.118 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3) ===================
17-03-17 23:55:09.118 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:55:09.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:55:09.148 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:55:09.148 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:55:09.148 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:55:09.278 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:55:09.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:55:10.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:55:10.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:55:10.218 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:55:10.218 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3) ===================
17-03-17 23:55:10.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:55:10.378 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:55:10.378 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:55:10.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:55:10.538 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:55:10.538 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:55:10.538 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:55:10.668 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:55:10.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:55:11.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:55:11.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:55:11.158 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:55:11.158 -07 000000610 INF: =================== Cycle #80 ===================
17-03-17 23:55:11.158 -07 000000610 INF: =================== Cycle #80, Flow Cell Temp 65° ===================
17-03-17 23:55:11.158 -07 000000610 INF: =================== Cycle #80, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 23:55:11.158 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 23:55:11.158 -07 000000429 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:55:11.168 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:55:11.168 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:55:11.168 -07 000000623 INF: FPGA: Recv TEC2EN 
17-03-17 23:55:11.178 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:55:11.178 -07 000000610 INF: =================== Cycle #80, Flow Cell Temp 65° ===================
17-03-17 23:55:11.178 -07 000000610 INF: =================== Cycle #80 ===================
17-03-17 23:55:11.178 -07 000000610 INF: WaitCommand(30000) start
17-03-17 23:55:12.118 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 23:55:12.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1287, R2=1338, Total=2625. Warn if over 250 bubbles per interval.
17-03-17 23:55:13.728 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.983999,
17-03-17 23:55:17.118 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:55:17.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1287, R2=1338, Total=2625. Warn if over 250 bubbles per interval.
17-03-17 23:55:19.088 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.979922,
17-03-17 23:55:22.118 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:55:22.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1287, R2=1339, Total=2626. Warn if over 250 bubbles per interval.
17-03-17 23:55:24.458 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.997626,
17-03-17 23:55:27.118 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:55:27.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1287, R2=1339, Total=2626. Warn if over 250 bubbles per interval.
17-03-17 23:55:29.838 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.994908,
17-03-17 23:55:32.118 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:55:32.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1287, R2=1339, Total=2626. Warn if over 250 bubbles per interval.
17-03-17 23:55:35.198 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.96762,
17-03-17 23:55:37.118 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:55:37.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1287, R2=1339, Total=2626. Warn if over 250 bubbles per interval.
17-03-17 23:55:40.568 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.037119,
17-03-17 23:55:41.188 -07 000000610 INF: WaitCommand(30000) end
17-03-17 23:55:41.188 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3) ===================
17-03-17 23:55:41.188 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 23:55:41.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:55:41.318 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:55:41.318 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:55:41.318 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:55:41.448 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 23:55:41.488 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:55:42.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:55:42.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:55:42.058 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 23:55:42.058 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3) ===================
17-03-17 23:55:42.118 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:55:42.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1287, R2=1339, Total=2626. Warn if over 250 bubbles per interval.
17-03-17 23:55:42.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:55:42.218 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:55:42.218 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:55:42.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:55:42.378 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:55:42.378 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:55:42.378 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:55:42.508 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:55:42.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:55:42.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:55:42.998 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:55:42.998 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:55:42.998 -07 000000610 INF: =================== Cycle #80 ===================
17-03-17 23:55:42.998 -07 000000623 INF: WaitCommand(30000) start
17-03-17 23:55:42.998 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:55:42.998 -07 000000462 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:55:44.218 -07 000000462 INF: AsyncDelayTimer waited 1216ms
17-03-17 23:55:44.218 -07 000000462 INF: LanePump: Xmit /1?\r
17-03-17 23:55:44.248 -07 000000462 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:55:44.248 -07 000000462 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:55:44.378 -07 000000462 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:55:44.418 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:55:45.938 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.019446,
17-03-17 23:55:46.758 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-17 23:55:46.788 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:55:47.118 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:55:47.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1287, R2=1339, Total=2626. Warn if over 250 bubbles per interval.
17-03-17 23:55:47.208 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-17 23:55:47.238 -07 000000462 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:55:47.238 -07 000000462 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 23:55:47.238 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:55:47.238 -07 000000462 INF: ===================  ===================
17-03-17 23:55:51.318 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.99219,
17-03-17 23:55:52.118 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:55:52.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1287, R2=1339, Total=2626. Warn if over 250 bubbles per interval.
17-03-17 23:55:57.118 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:55:57.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1287, R2=1339, Total=2626. Warn if over 250 bubbles per interval.
17-03-17 23:55:57.458 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.989471,
17-03-17 23:56:02.118 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:56:02.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1287, R2=1339, Total=2626. Warn if over 250 bubbles per interval.
17-03-17 23:56:02.828 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.986717,
17-03-17 23:56:07.118 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:56:07.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1287, R2=1339, Total=2626. Warn if over 250 bubbles per interval.
17-03-17 23:56:08.198 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.986717,
17-03-17 23:56:12.118 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:56:12.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1287, R2=1339, Total=2626. Warn if over 250 bubbles per interval.
17-03-17 23:56:13.008 -07 000000623 INF: WaitCommand(30000) end
17-03-17 23:56:13.008 -07 000000610 INF: =================== Cycle #80, Flow Cell Temp 22° ===================
17-03-17 23:56:13.008 -07 000000610 INF: =================== Cycle #80, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 23:56:13.298 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:56:13.298 -07 000000475 INF: FPGA: Recv TEC2EN 
17-03-17 23:56:13.308 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:13.308 -07 000000610 INF: =================== Cycle #80, Flow Cell Temp 22° ===================
17-03-17 23:56:13.308 -07 000000610 INF: =================== Cycle #80 ===================
17-03-17 23:56:13.308 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3) ===================
17-03-17 23:56:13.308 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:56:13.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:56:13.398 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:56:13.398 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:56:13.398 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:56:13.528 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:56:13.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:56:13.568 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.983999,
17-03-17 23:56:16.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:56:16.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:56:17.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:56:17.758 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-17 23:56:17.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1290, R2=1341, Total=2631. Warn if over 250 bubbles per interval.
17-03-17 23:56:17.768 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:56:18.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:56:18.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:56:18.218 -07 000000610 INF: LanePump: Waited 4649 ms for pump motion to complete
17-03-17 23:56:18.218 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3) ===================
17-03-17 23:56:18.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:56:18.378 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:56:18.378 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:56:18.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:56:18.538 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:56:18.538 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:56:18.538 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:56:18.668 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:56:18.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:56:18.938 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.011254,
17-03-17 23:56:19.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:56:19.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:56:19.158 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:56:19.158 -07 000000610 INF: =================== Cycle #80 ===================
17-03-17 23:56:20.378 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:56:20.378 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 23:56:20.378 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:56:20.398 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:56:20.398 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 23:56:20.398 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 23:56:20.548 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:56:20.568 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:56:20.568 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:56:20.618 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:56:20.638 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:56:20.638 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:56:20.738 -07 000000610 INF: =================== Cycle #80, Pumping Reagent USM (2) ===================
17-03-17 23:56:20.738 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:56:20.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:56:20.768 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:56:20.768 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:56:20.768 -07 000000610 INF: =================== Cycle #80, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 23:56:20.898 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:56:20.938 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:56:22.118 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:56:22.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1290, R2=1341, Total=2631. Warn if over 250 bubbles per interval.
17-03-17 23:56:22.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:56:22.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:56:22.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:56:22.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:56:22.858 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:56:22.858 -07 000000610 INF: =================== Cycle #80, Pumping Reagent USM (2) ===================
17-03-17 23:56:22.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:56:23.018 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:56:23.018 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:56:23.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:56:23.178 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:56:23.178 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:56:23.178 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:56:23.308 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:56:23.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:56:23.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:56:23.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:56:23.798 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:56:23.798 -07 000000610 INF: =================== Cycle #80 ===================
17-03-17 23:56:24.308 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.978563,
17-03-17 23:56:25.018 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:56:25.018 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:56:25.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:56:25.038 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:56:25.038 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 23:56:25.038 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:56:25.188 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:56:25.208 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:56:25.208 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:56:25.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:56:25.278 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:56:25.278 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:56:25.378 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3) ===================
17-03-17 23:56:25.378 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:56:25.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:56:25.408 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:56:25.408 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:56:25.408 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:56:25.538 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:56:25.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:56:26.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:56:26.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:56:26.478 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:56:26.478 -07 000000610 INF: =================== Cycle #80, Pumping Reagent PR2 (3) ===================
17-03-17 23:56:26.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:56:26.638 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:56:26.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:56:26.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:56:26.798 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:56:26.798 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:56:26.798 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:56:26.928 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:56:26.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:56:27.118 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 23:56:27.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:56:27.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:56:27.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:56:27.418 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:56:27.418 -07 000000610 INF: =================== Cycle #80 ===================
17-03-17 23:56:27.418 -07 000000462 INF: WaitCommand(10000) start
17-03-17 23:56:27.418 -07 000000459 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:56:27.418 -07 000000459 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:56:28.638 -07 000000459 INF: AsyncDelayTimer waited 1216ms
17-03-17 23:56:28.638 -07 000000459 INF: LanePump: Xmit /1?\r
17-03-17 23:56:28.668 -07 000000459 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:56:28.668 -07 000000459 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:56:28.798 -07 000000459 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:56:28.838 -07 000000459 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:56:29.678 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.997626,
17-03-17 23:56:30.368 -07 000000459 INF: LanePump: Xmit /1Q\r
17-03-17 23:56:30.398 -07 000000459 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:56:30.818 -07 000000459 INF: LanePump: Xmit /1Q\r
17-03-17 23:56:30.848 -07 000000459 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:56:30.848 -07 000000459 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 23:56:30.848 -07 000000459 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:56:30.848 -07 000000459 INF: ===================  ===================
17-03-17 23:56:32.118 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:56:32.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:56:35.048 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.012614,
17-03-17 23:56:37.118 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:56:37.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:56:37.428 -07 000000462 INF: WaitCommand(10000) end
17-03-17 23:56:37.428 -07 000000610 INF: =================== Cycle #80, Imaging ===================
17-03-17 23:56:37.428 -07 000000610 INF: Imaging Cycle 80: ScanTilesCommand Cycle 80 time start.
17-03-17 23:56:37.428 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 23:56:37.428 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:56:37.458 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:56:37.458 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 23:56:37.458 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 23:56:37.758 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:56:37.778 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:56:37.778 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:56:37.828 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:56:37.848 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:56:37.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:56:37.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:56:37.848 -07 000000429 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 23:56:37.848 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:56:37.848 -07 000000429 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 23:56:37.848 -07 000000480 INF: FPGA: Recv EXLED1ON 
17-03-17 23:56:37.858 -07 000000429 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:56:37.858 -07 000000429 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 23:56:37.858 -07 000000462 INF: FPGA: Recv EXLED1ADCR 23170
17-03-17 23:56:37.868 -07 000000429 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:37.868 -07 000000429 INF: RedLED: Using Red data: Photodiode ADC 23170 --> 7.4 mW (old method), or 205.4 mW (new method). Difference = 197.9 mW
17-03-17 23:56:37.868 -07 000000429 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 23:56:37.868 -07 000000623 INF: FPGA: Recv EXLED1OFF 
17-03-17 23:56:37.878 -07 000000429 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:37.878 -07 000000429 INF: RedLED: LED was on for 20 ms
17-03-17 23:56:37.878 -07 000000429 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 23:56:37.878 -07 000000429 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 23:56:37.878 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:56:37.878 -07 000000429 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 23:56:37.878 -07 000000475 INF: FPGA: Recv EXLED2ON 
17-03-17 23:56:37.888 -07 000000429 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:56:37.888 -07 000000429 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 23:56:37.888 -07 000000480 INF: FPGA: Recv EXLED1ADCR 2103
17-03-17 23:56:37.898 -07 000000429 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:37.898 -07 000000429 INF: GreenLED: Using Green data: Photodiode ADC 2103 --> 0.9 mW (old method), or 182.7 mW (new method). Difference = 181.8 mW
17-03-17 23:56:37.898 -07 000000429 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 23:56:37.898 -07 000000486 INF: FPGA: Recv EXLED2OFF 
17-03-17 23:56:37.908 -07 000000429 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:37.908 -07 000000429 INF: GreenLED: LED was on for 19 ms
17-03-17 23:56:37.908 -07 000000429 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 23:56:37.908 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:56:37.908 -07 000000486 INF: FPGA: Recv EMCUR 
17-03-17 23:56:37.918 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:56:37.918 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 23:56:38.418 -07 000000627 INF: FPGA: Recv EMOUT
17-03-17 23:56:38.418 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 23:56:38.418 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 23:56:38.418 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-17 23:56:38.428 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:56:38.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:56:38.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.126060173453728. ------
17-03-17 23:56:38.428 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:56:38.428 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17861 mm
17-03-17 23:56:38.428 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:56:38.428 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:56:38.428 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:56:38.428 -07 000000480 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 23:56:38.428 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 39017, sync = True, waitForSettling = False)
17-03-17 23:56:38.428 -07 000000462 INF: Z Motor: Moving to -0.178608 mm, started at -0.126060 mm, distance = -52.55 um
17-03-17 23:56:38.438 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:56:38.438 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:56:38.438 -07 000000486 INF: FPGA: Recv YRDPOS 154381
17-03-17 23:56:38.448 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:56:38.448 -07 000000480 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:56:38.448 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:56:38.448 -07 000000480 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 23:56:38.448 -07 000000480 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:56:38.458 -07 000000462 INF: FPGA: Xmit ZDACW 39017\n [Z Motor]
17-03-17 23:56:38.458 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:56:38.468 -07 000000480 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:56:38.468 -07 000000462 INF: FPGA: 'ZDACW 39017' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:56:38.478 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:56:38.478 -07 000000576 INF: FPGA: Recv ZDACR 39017
17-03-17 23:56:38.488 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:56:38.488 -07 000000462 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 23:56:38.648 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:56:38.648 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:56:40.148 -07 000000486 INF: FPGA: Recv YMVTO 122703 24777
17-03-17 23:56:40.148 -07 000000480 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1703 ms overall
17-03-17 23:56:40.148 -07 000000480 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:56:40.148 -07 000000480 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24750 steps, but required 24777 steps (15.486 mm). Slippage = 0.017 mm (0.00%).
17-03-17 23:56:40.148 -07 000000480 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.468 mm, average velocity = 9.083 mm/sec
17-03-17 23:56:40.428 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.99219,
17-03-17 23:56:42.118 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:56:42.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:56:42.998 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:56:42.998 -07 000000475 INF: FPGA: Recv YRDPOS 122697
17-03-17 23:56:43.008 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:56:43.008 -07 000000480 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:56:43.028 -07 000000480 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:56:43.028 -07 000000480 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 23:56:43.028 -07 000000480 INF: Y Motor: Moved to 59.9106 after 4597 ms
17-03-17 23:56:43.038 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178608 mm (DAC = 39017)
17-03-17 23:56:43.038 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:43.038 -07 000000429 INF: FPGA: Recv ZSGSRD 37096
17-03-17 23:56:43.048 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:43.048 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:43.048 -07 000000486 INF: FPGA: Recv ZSGSRD 37095
17-03-17 23:56:43.058 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:43.058 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:43.058 -07 000000576 INF: FPGA: Recv ZSGSRD 37091
17-03-17 23:56:43.068 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:43.068 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:43.068 -07 000000486 INF: FPGA: Recv ZSGSRD 37092
17-03-17 23:56:43.078 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:43.078 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:43.078 -07 000000475 INF: FPGA: Recv ZSGSRD 37097
17-03-17 23:56:43.088 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:43.088 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:43.088 -07 000000627 INF: FPGA: Recv ZSGSRD 37091
17-03-17 23:56:43.098 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:43.098 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:43.098 -07 000000486 INF: FPGA: Recv ZSGSRD 37099
17-03-17 23:56:43.108 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:43.108 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:43.108 -07 000000429 INF: FPGA: Recv ZSGSRD 37091
17-03-17 23:56:43.118 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:43.118 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:43.118 -07 000000627 INF: FPGA: Recv ZSGSRD 37091
17-03-17 23:56:43.128 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:43.128 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:43.128 -07 000000429 INF: FPGA: Recv ZSGSRD 37094
17-03-17 23:56:43.138 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:43.138 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:56:43.138 -07 000000462 INF: FPGA: Recv ZPIEZORD 33241
17-03-17 23:56:43.148 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:43.148 -07 000000623 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.954 V. Piezo Error = -8.5 V.
17-03-17 23:56:43.148 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37094 (-177.7 uncal um), Error = 0.9 uncal um, Median = 37093 (-177.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37091 (-177.7 uncal um), Max = 37099 (-177.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:56:43.148 -07 000000623 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37094, posNoise = 5, negNoise = 3
17-03-17 23:56:43.148 -07 000000623 INF: Z Motor: After move to -0.178608, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:56:43.148 -07 000000623 INF: Z Motor: Settle wait time = 4600 ms, measure time = 110 ms (allowed 150 ms), total time = 4710 ms
17-03-17 23:56:43.148 -07 000000623 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:56:43.188 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4755 ms
17-03-17 23:56:43.188 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:56:43.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:56:43.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:56:43.188 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:56:43.188 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:56:43.188 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:56:43.188 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:56:43.188 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:56:43.188 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:56:43.218 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 23:56:43.218 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:56:43.218 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:56:43.218 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:56:43.238 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:56:43.238 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 23:56:43.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:56:43.278 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:56:43.578 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:56:43.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:56:43.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:56:43.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:56:43.618 -07 000000429 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:56:43.618 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 23:56:43.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-17 23:56:43.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 23:56:43.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:43.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:56:43.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:56:43.818 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:56:43.818 -07 000000429 INF: Image SNR check: start
17-03-17 23:56:43.818 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:56:43.828 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:56:43.828 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:56:43.828 -07 000000429 INF: Image SNR check: pass  [peak (Max-Min)=118.94]
17-03-17 23:56:43.828 -07 000000429 INF: Autofocus start
17-03-17 23:56:43.828 -07 000000429 INF: MeasureProfile start
17-03-17 23:56:43.838 -07 000000429 INF: MeasureProfile done
17-03-17 23:56:43.838 -07 000000429 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:56:43.838 -07 000000429 INF: Autofocus finished
17-03-17 23:56:44.028 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:56:44.028 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 23:56:44.028 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.178623077197616. ----------
17-03-17 23:56:44.038 -07 000000610 INF: Cycle	80	Tile	1	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:56:44.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37497, sync = True, waitForSettling = True)
17-03-17 23:56:44.038 -07 000000610 INF: Z Motor: Moving to -0.171650 mm, started at -0.178623 mm, distance = 6.97 um
17-03-17 23:56:44.038 -07 000000610 INF: FPGA: Xmit ZDACW 37497\n [Z Motor]
17-03-17 23:56:44.038 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:56:44.048 -07 000000610 INF: FPGA: 'ZDACW 37497' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:56:44.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:56:44.048 -07 000000627 INF: FPGA: Recv ZDACR 37497
17-03-17 23:56:44.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:44.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:56:44.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:44.208 -07 000000486 INF: FPGA: Recv ZSGSRD 36010
17-03-17 23:56:44.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:44.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:44.218 -07 000000627 INF: FPGA: Recv ZSGSRD 36014
17-03-17 23:56:44.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:44.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:44.228 -07 000000429 INF: FPGA: Recv ZSGSRD 36006
17-03-17 23:56:44.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:44.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:44.238 -07 000000462 INF: FPGA: Recv ZSGSRD 36011
17-03-17 23:56:44.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:44.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:44.248 -07 000000480 INF: FPGA: Recv ZSGSRD 36005
17-03-17 23:56:44.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:44.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:44.258 -07 000000623 INF: FPGA: Recv ZSGSRD 36012
17-03-17 23:56:44.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:44.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:44.268 -07 000000576 INF: FPGA: Recv ZSGSRD 36006
17-03-17 23:56:44.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:44.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:44.278 -07 000000627 INF: FPGA: Recv ZSGSRD 36009
17-03-17 23:56:44.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:44.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:44.288 -07 000000429 INF: FPGA: Recv ZSGSRD 36018
17-03-17 23:56:44.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:44.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:44.298 -07 000000486 INF: FPGA: Recv ZSGSRD 36011
17-03-17 23:56:44.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:44.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:56:44.308 -07 000000462 INF: FPGA: Recv ZPIEZORD 31785
17-03-17 23:56:44.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:44.318 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -9.3 V.
17-03-17 23:56:44.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36010 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36010 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36005 (-170.7 uncal um), Max = 36018 (-170.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:56:44.318 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36010, posNoise = 8, negNoise = 5
17-03-17 23:56:44.318 -07 000000610 INF: Z Motor: After move to -0.171650, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:56:44.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:56:44.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:56:44.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:56:44.318 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:56:44.318 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:56:44.318 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:56:44.318 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:56:44.318 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:56:44.318 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:56:44.318 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:56:44.318 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:56:44.318 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:56:44.318 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:56:44.328 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:56:44.328 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:56:44.338 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 23:56:44.338 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:56:44.348 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 23 ms.
17-03-17 23:56:44.348 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:56:44.348 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:56:44.348 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:56:44.358 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 23:56:44.358 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 23:56:44.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37674 150\n [Camera]
17-03-17 23:56:44.558 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:56:45.598 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:56:45.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:56:45.598 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:56:45.598 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:56:45.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:56:45.608 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:56:45.608 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:56:45.608 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:56:45.608 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:56:45.608 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 23:56:45.788 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.003063,
17-03-17 23:56:45.798 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37674 1422
17-03-17 23:56:45.938 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:56:46.008 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:56:46.008 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:56:46.008 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:46.008 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:56:46.008 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:56:46.008 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:46.008 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:56:46.008 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:56:46.008 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:56:46.018 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:56:46.438 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:56:46.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:56:46.448 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:56:46.558 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:56:46.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:56:46.558 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:56:46.568 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:56:46.568 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:56:46.568 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:56:46.568 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:56:46.638 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:56:46.638 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:56:46.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37674 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:56:46.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:56:46.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.171659231235947. ------
17-03-17 23:56:46.638 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:56:46.638 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17749 mm
17-03-17 23:56:46.638 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:56:46.648 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38772, sync = True, waitForSettling = False)
17-03-17 23:56:46.648 -07 000000459 INF: Z Motor: Moving to -0.177487 mm, started at -0.171659 mm, distance = -5.83 um
17-03-17 23:56:46.648 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:56:46.648 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:56:46.648 -07 000000459 INF: FPGA: Xmit ZDACW 38772\n [Z Motor]
17-03-17 23:56:46.648 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:56:46.648 -07 000000462 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 23:56:46.648 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:56:46.658 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:56:46.658 -07 000000459 INF: FPGA: 'ZDACW 38772' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:56:46.668 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:56:46.668 -07 000000433 INF: FPGA: Recv YRDPOS 122697
17-03-17 23:56:46.678 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:56:46.678 -07 000000462 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:56:46.678 -07 000000462 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:56:46.678 -07 000000462 INF: Y Motor: Moving 1331 steps2
17-03-17 23:56:46.678 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:56:46.678 -07 000000623 INF: FPGA: Recv ZDACR 38772
17-03-17 23:56:46.688 -07 000000459 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:56:46.688 -07 000000459 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 23:56:46.688 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:56:46.858 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:56:46.858 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 23:56:46.968 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:56:46.968 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:56:46.968 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:46.968 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:56:46.968 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:56:46.968 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:46.968 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:56:46.968 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-17 23:56:46.968 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:56:46.978 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 23:56:47.058 -07 000000442 INF: FPGA: Recv YMVTILE
17-03-17 23:56:47.058 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 23:56:47.098 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:56:47.098 -07 000000433 INF: FPGA: Recv YRDPOS 124379
17-03-17 23:56:47.108 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:56:47.108 -07 000000462 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:56:47.108 -07 000000462 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 23:56:47.108 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.832 mm, average velocity = 2.161 mm/sec
17-03-17 23:56:47.118 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:56:47.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:56:48.058 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:56:48.058 -07 000000429 INF: FPGA: Recv YRDPOS 124380
17-03-17 23:56:48.068 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:56:48.068 -07 000000462 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:56:48.088 -07 000000462 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:56:48.088 -07 000000462 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:56:48.088 -07 000000462 INF: Y Motor: Moved to 60.7324 after 1445 ms (table move)
17-03-17 23:56:48.098 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177487 mm (DAC = 38772)
17-03-17 23:56:48.098 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:48.098 -07 000000459 INF: FPGA: Recv ZSGSRD 36914
17-03-17 23:56:48.108 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:56:48.108 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:48.108 -07 000000459 INF: FPGA: Recv ZSGSRD 36911
17-03-17 23:56:48.118 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:48.118 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:48.118 -07 000000433 INF: FPGA: Recv ZSGSRD 36924
17-03-17 23:56:48.128 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:48.128 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:48.128 -07 000000433 INF: FPGA: Recv ZSGSRD 36925
17-03-17 23:56:48.138 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:48.138 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:48.138 -07 000000433 INF: FPGA: Recv ZSGSRD 36916
17-03-17 23:56:48.148 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:48.148 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:48.148 -07 000000433 INF: FPGA: Recv ZSGSRD 36921
17-03-17 23:56:48.158 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:48.158 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:48.158 -07 000000433 INF: FPGA: Recv ZSGSRD 36915
17-03-17 23:56:48.168 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:48.168 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:48.168 -07 000000480 INF: FPGA: Recv ZSGSRD 36916
17-03-17 23:56:48.178 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:48.178 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:48.178 -07 000000593 INF: FPGA: Recv ZSGSRD 36917
17-03-17 23:56:48.188 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:48.188 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:48.188 -07 000000475 INF: FPGA: Recv ZSGSRD 36916
17-03-17 23:56:48.198 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:48.198 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:56:48.198 -07 000000475 INF: FPGA: Recv ZPIEZORD 33025
17-03-17 23:56:48.208 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:48.208 -07 000000576 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.916 V. Piezo Error = -8.6 V.
17-03-17 23:56:48.208 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36918 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36916 (-176.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36911 (-176.6 uncal um), Max = 36925 (-176.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:56:48.208 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36918, posNoise = 7, negNoise = 7
17-03-17 23:56:48.208 -07 000000576 INF: Z Motor: After move to -0.177487, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:56:48.208 -07 000000576 INF: Z Motor: Settle wait time = 1450 ms, measure time = 109 ms (allowed 150 ms), total time = 1559 ms
17-03-17 23:56:48.208 -07 000000576 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:56:48.258 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-17 23:56:48.258 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:56:48.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:56:48.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:56:48.258 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:56:48.258 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:56:48.258 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:56:48.258 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:56:48.258 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:56:48.258 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:56:48.268 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:56:48.268 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:56:48.278 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 23:56:48.278 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:56:48.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:56:48.328 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:56:48.628 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:56:48.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:56:48.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:56:48.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:56:48.658 -07 000000627 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:56:48.668 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 23:56:48.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-17 23:56:48.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:56:48.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:48.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:56:48.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:56:48.768 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:56:48.768 -07 000000442 INF: Autofocus start
17-03-17 23:56:48.768 -07 000000442 INF: MeasureProfile start
17-03-17 23:56:48.768 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:56:48.778 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:56:48.778 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:56:48.778 -07 000000442 INF: MeasureProfile done
17-03-17 23:56:48.778 -07 000000442 INF: X=64  Z correction [um]=0.2557664
17-03-17 23:56:48.778 -07 000000442 INF: Autofocus finished
17-03-17 23:56:48.978 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:56:48.978 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:56:48.978 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177492415860666. ----------
17-03-17 23:56:48.978 -07 000000610 INF: Cycle	80	Tile	2	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:56:48.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37341, sync = True, waitForSettling = True)
17-03-17 23:56:48.988 -07 000000610 INF: Z Motor: Moving to -0.170936 mm, started at -0.177492 mm, distance = 6.56 um
17-03-17 23:56:48.988 -07 000000610 INF: FPGA: Xmit ZDACW 37341\n [Z Motor]
17-03-17 23:56:48.988 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:56:48.998 -07 000000610 INF: FPGA: 'ZDACW 37341' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:48.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:56:48.998 -07 000000627 INF: FPGA: Recv ZDACR 37341
17-03-17 23:56:49.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:49.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:56:49.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:49.158 -07 000000576 INF: FPGA: Recv ZSGSRD 35898
17-03-17 23:56:49.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:56:49.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:49.168 -07 000000627 INF: FPGA: Recv ZSGSRD 35901
17-03-17 23:56:49.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:49.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:49.178 -07 000000486 INF: FPGA: Recv ZSGSRD 35898
17-03-17 23:56:49.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:49.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:49.188 -07 000000486 INF: FPGA: Recv ZSGSRD 35900
17-03-17 23:56:49.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:49.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:49.198 -07 000000480 INF: FPGA: Recv ZSGSRD 35901
17-03-17 23:56:49.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:49.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:49.208 -07 000000442 INF: FPGA: Recv ZSGSRD 35898
17-03-17 23:56:49.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:49.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:49.218 -07 000000475 INF: FPGA: Recv ZSGSRD 35903
17-03-17 23:56:49.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:49.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:49.228 -07 000000442 INF: FPGA: Recv ZSGSRD 35901
17-03-17 23:56:49.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:49.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:49.238 -07 000000593 INF: FPGA: Recv ZSGSRD 35899
17-03-17 23:56:49.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:49.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:49.248 -07 000000462 INF: FPGA: Recv ZSGSRD 35906
17-03-17 23:56:49.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:49.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:56:49.258 -07 000000593 INF: FPGA: Recv ZPIEZORD 31633
17-03-17 23:56:49.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:49.268 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.698 V. Piezo Error = -9.4 V.
17-03-17 23:56:49.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35900 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35900 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35898 (-170.1 uncal um), Max = 35906 (-170.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 23:56:49.268 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35900, posNoise = 6, negNoise = 2
17-03-17 23:56:49.268 -07 000000610 INF: Z Motor: After move to -0.170936, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:56:49.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:56:49.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:56:49.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:56:49.268 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:56:49.268 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:56:49.268 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:56:49.268 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:56:49.268 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:56:49.268 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:56:49.268 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:56:49.268 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:56:49.268 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:56:49.268 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:56:49.278 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:56:49.278 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:56:49.278 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:56:49.278 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:56:49.288 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:56:49.288 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:56:49.288 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:56:49.288 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:56:49.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37518 150\n [Camera]
17-03-17 23:56:49.498 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:56:50.528 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1231
17-03-17 23:56:50.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1231
17-03-17 23:56:50.538 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:56:50.538 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:56:50.538 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:56:50.538 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1231
17-03-17 23:56:50.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1231
17-03-17 23:56:50.538 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:56:50.538 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:56:50.538 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:56:50.728 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37518 1422
17-03-17 23:56:50.868 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:56:50.928 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:56:50.928 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:56:50.928 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:50.938 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:56:50.938 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:56:50.938 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:56:50.938 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:56:50.938 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:50.938 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:56:50.948 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:56:51.168 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.993549,
17-03-17 23:56:51.378 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:56:51.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:56:51.378 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:56:51.378 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:56:51.378 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:56:51.378 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:56:51.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:56:51.378 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:56:51.378 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:56:51.378 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:56:51.568 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:56:51.568 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:56:51.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37518 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:56:51.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:56:51.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.170952567900353. ------
17-03-17 23:56:51.568 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17763 mm
17-03-17 23:56:51.568 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:56:51.568 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:56:51.568 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:56:51.568 -07 000000486 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 23:56:51.578 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:56:51.778 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 23:56:51.778 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:56:51.778 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:51.788 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:56:51.788 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:56:51.788 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:51.788 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:56:51.788 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:56:51.788 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 23:56:51.798 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:56:52.038 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38804, sync = True, waitForSettling = False)
17-03-17 23:56:52.038 -07 000000433 INF: Z Motor: Moving to -0.177633 mm, started at -0.170953 mm, distance = -6.68 um
17-03-17 23:56:52.038 -07 000000433 INF: FPGA: Xmit ZDACW 38804\n [Z Motor]
17-03-17 23:56:52.038 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:56:52.038 -07 000000593 INF: FPGA: Recv YRDPOS 124380
17-03-17 23:56:52.038 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 452 ms to get response, and 462 ms overall
17-03-17 23:56:52.038 -07 000000486 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:56:52.038 -07 000000486 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:56:52.038 -07 000000486 INF: Y Motor: Moving 1344 steps-22
17-03-17 23:56:52.038 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 462 ms to get response, and 465 ms overall
17-03-17 23:56:52.038 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:56:52.048 -07 000000433 INF: FPGA: 'ZDACW 38804' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:56:52.048 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:56:52.058 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:56:52.068 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:56:52.068 -07 000000593 INF: FPGA: Recv ZDACR 38804
17-03-17 23:56:52.078 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:56:52.078 -07 000000433 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 23:56:52.118 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:56:52.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:56:52.248 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:56:52.248 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 23:56:52.428 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 23:56:52.428 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 23:56:52.478 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:56:52.478 -07 000000462 INF: FPGA: Recv YRDPOS 126081
17-03-17 23:56:52.488 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:56:52.488 -07 000000486 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:56:52.488 -07 000000486 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:56:52.488 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.127 mm/sec
17-03-17 23:56:53.438 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:56:53.438 -07 000000480 INF: FPGA: Recv YRDPOS 126081
17-03-17 23:56:53.448 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:56:53.448 -07 000000486 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:56:53.468 -07 000000486 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:56:53.468 -07 000000486 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:56:53.468 -07 000000486 INF: Y Motor: Moved to 61.5630 after 1897 ms (table move)
17-03-17 23:56:53.478 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177633 mm (DAC = 38804)
17-03-17 23:56:53.478 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:53.478 -07 000000433 INF: FPGA: Recv ZSGSRD 36939
17-03-17 23:56:53.488 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:53.488 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:53.488 -07 000000480 INF: FPGA: Recv ZSGSRD 36936
17-03-17 23:56:53.498 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:53.498 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:53.498 -07 000000593 INF: FPGA: Recv ZSGSRD 36934
17-03-17 23:56:53.508 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:53.508 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:53.508 -07 000000480 INF: FPGA: Recv ZSGSRD 36941
17-03-17 23:56:53.518 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:53.518 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:53.518 -07 000000486 INF: FPGA: Recv ZSGSRD 36948
17-03-17 23:56:53.528 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:53.528 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:53.528 -07 000000433 INF: FPGA: Recv ZSGSRD 36943
17-03-17 23:56:53.538 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:53.538 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:53.538 -07 000000486 INF: FPGA: Recv ZSGSRD 36938
17-03-17 23:56:53.548 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:53.548 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:53.548 -07 000000433 INF: FPGA: Recv ZSGSRD 36943
17-03-17 23:56:53.558 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:53.558 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:53.558 -07 000000627 INF: FPGA: Recv ZSGSRD 36939
17-03-17 23:56:53.568 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:53.568 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:53.568 -07 000000462 INF: FPGA: Recv ZSGSRD 36938
17-03-17 23:56:53.578 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:53.578 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:56:53.578 -07 000000486 INF: FPGA: Recv ZPIEZORD 33032
17-03-17 23:56:53.588 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:53.588 -07 000000475 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.921 V. Piezo Error = -8.6 V.
17-03-17 23:56:53.588 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36940 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36939 (-176.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36934 (-176.7 uncal um), Max = 36948 (-176.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:56:53.588 -07 000000475 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36940, posNoise = 8, negNoise = 6
17-03-17 23:56:53.588 -07 000000475 INF: Z Motor: After move to -0.177633, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:56:53.588 -07 000000475 INF: Z Motor: Settle wait time = 1439 ms, measure time = 110 ms (allowed 150 ms), total time = 1549 ms
17-03-17 23:56:53.588 -07 000000475 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:56:53.628 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2053 ms
17-03-17 23:56:53.628 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:56:53.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:56:53.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:56:53.628 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:56:53.628 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:56:53.628 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:56:53.628 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:56:53.628 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:56:53.628 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:56:53.638 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:56:53.638 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:56:53.648 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:56:53.648 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:56:53.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:56:53.698 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:56:53.998 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:56:53.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:56:53.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:56:53.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:56:54.028 -07 000000433 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:56:54.038 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 23:56:54.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-17 23:56:54.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:56:54.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:54.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:56:54.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:56:54.138 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:56:54.138 -07 000000480 INF: Autofocus start
17-03-17 23:56:54.138 -07 000000480 INF: MeasureProfile start
17-03-17 23:56:54.138 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:56:54.148 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:56:54.148 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:56:54.148 -07 000000480 INF: MeasureProfile done
17-03-17 23:56:54.148 -07 000000480 INF: X=-32  Z correction [um]=-0.2344
17-03-17 23:56:54.148 -07 000000480 INF: Autofocus finished
17-03-17 23:56:54.348 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:56:54.348 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:56:54.348 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177633748527785. ----------
17-03-17 23:56:54.348 -07 000000610 INF: Cycle	80	Tile	3	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:56:54.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37266, sync = True, waitForSettling = True)
17-03-17 23:56:54.358 -07 000000610 INF: Z Motor: Moving to -0.170593 mm, started at -0.177634 mm, distance = 7.04 um
17-03-17 23:56:54.358 -07 000000610 INF: FPGA: Xmit ZDACW 37266\n [Z Motor]
17-03-17 23:56:54.358 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:56:54.368 -07 000000610 INF: FPGA: 'ZDACW 37266' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:56:54.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:56:54.368 -07 000000462 INF: FPGA: Recv ZDACR 37266
17-03-17 23:56:54.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:54.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:56:54.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:54.528 -07 000000480 INF: FPGA: Recv ZSGSRD 35842
17-03-17 23:56:54.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:56:54.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:54.538 -07 000000433 INF: FPGA: Recv ZSGSRD 35843
17-03-17 23:56:54.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:54.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:54.548 -07 000000593 INF: FPGA: Recv ZSGSRD 35853
17-03-17 23:56:54.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:54.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:54.558 -07 000000593 INF: FPGA: Recv ZSGSRD 35848
17-03-17 23:56:54.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:54.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:54.568 -07 000000486 INF: FPGA: Recv ZSGSRD 35843
17-03-17 23:56:54.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:54.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:54.578 -07 000000623 INF: FPGA: Recv ZSGSRD 35852
17-03-17 23:56:54.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:54.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:54.588 -07 000000475 INF: FPGA: Recv ZSGSRD 35844
17-03-17 23:56:54.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:54.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:54.598 -07 000000623 INF: FPGA: Recv ZSGSRD 35848
17-03-17 23:56:54.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:54.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:54.608 -07 000000486 INF: FPGA: Recv ZSGSRD 35843
17-03-17 23:56:54.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:54.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:54.618 -07 000000593 INF: FPGA: Recv ZSGSRD 35844
17-03-17 23:56:54.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:54.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:56:54.628 -07 000000433 INF: FPGA: Recv ZPIEZORD 31578
17-03-17 23:56:54.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:54.638 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -9.4 V.
17-03-17 23:56:54.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35846 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35844 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35842 (-169.7 uncal um), Max = 35853 (-169.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:56:54.638 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35846, posNoise = 7, negNoise = 4
17-03-17 23:56:54.638 -07 000000610 INF: Z Motor: After move to -0.170593, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:56:54.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:56:54.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:56:54.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:56:54.638 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:56:54.638 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:56:54.638 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:56:54.638 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:56:54.638 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:56:54.638 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:56:54.638 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:56:54.638 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:56:54.638 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:56:54.638 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:56:54.648 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:56:54.648 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:56:54.648 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:56:54.648 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:56:54.658 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:56:54.658 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:56:54.658 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:56:54.658 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:56:54.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37442 150\n [Camera]
17-03-17 23:56:54.868 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:56:55.898 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:56:55.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:56:55.898 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:56:55.908 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:56:55.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:56:55.908 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:56:55.908 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:56:55.908 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:56:55.918 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:56:55.918 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:56:56.098 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37442 1422
17-03-17 23:56:56.248 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:56:56.308 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:56:56.308 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:56:56.308 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:56.308 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:56:56.308 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:56:56.308 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:56:56.308 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:56:56.308 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:56.318 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:56:56.318 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 23:56:56.528 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.979922,
17-03-17 23:56:56.748 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:56:56.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:56:56.748 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:56:56.748 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:56:56.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:56:56.748 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:56:56.748 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:56:56.748 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:56:56.858 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:56:56.858 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:56:56.938 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:56:56.938 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:56:56.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37442 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:56:56.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:56:56.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.170605660444698. ------
17-03-17 23:56:56.938 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:56:56.938 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17692 mm
17-03-17 23:56:56.938 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:56:56.948 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:56:56.948 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:56:56.948 -07 000000442 INF: Z Motor: Entering MoveAbsStepped (DAC = 38647, sync = True, waitForSettling = False)
17-03-17 23:56:56.948 -07 000000442 INF: Z Motor: Moving to -0.176915 mm, started at -0.170606 mm, distance = -6.31 um
17-03-17 23:56:56.948 -07 000000442 INF: FPGA: Xmit ZDACW 38647\n [Z Motor]
17-03-17 23:56:56.948 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:56:56.948 -07 000000433 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-17 23:56:56.948 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 23:56:56.958 -07 000000442 INF: FPGA: 'ZDACW 38647' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:56.958 -07 000000442 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:56:56.958 -07 000000627 INF: FPGA: Recv ZDACR 38647
17-03-17 23:56:56.968 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:56:56.968 -07 000000442 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:56.968 -07 000000442 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 23:56:56.978 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:56:56.978 -07 000000576 INF: FPGA: Recv YRDPOS 126082
17-03-17 23:56:56.988 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-17 23:56:56.988 -07 000000433 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:56:56.988 -07 000000433 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:56:56.988 -07 000000433 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:56:56.988 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:56:57.118 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:56:57.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:56:57.128 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:56:57.128 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:56:57.128 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:57.128 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:56:57.138 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:56:57.168 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:56:57.168 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:56:57.238 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:56:57.248 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:56:57.248 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:57.248 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:56:57.248 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-17 23:56:57.368 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 23:56:57.368 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 378 ms overall
17-03-17 23:56:57.408 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:56:57.408 -07 000000429 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:56:57.418 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:56:57.418 -07 000000433 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:56:57.418 -07 000000433 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 23:56:57.418 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.221 mm/sec
17-03-17 23:56:58.368 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:56:58.368 -07 000000459 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:56:58.378 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:56:58.378 -07 000000433 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:56:58.398 -07 000000433 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:56:58.398 -07 000000433 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:56:58.398 -07 000000433 INF: Y Motor: Moved to 62.3950 after 1454 ms (table move)
17-03-17 23:56:58.398 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176915 mm (DAC = 38647)
17-03-17 23:56:58.398 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:58.408 -07 000000627 INF: FPGA: Recv ZSGSRD 36833
17-03-17 23:56:58.408 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 23:56:58.408 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:58.408 -07 000000433 INF: FPGA: Recv ZSGSRD 36827
17-03-17 23:56:58.418 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:56:58.418 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:58.418 -07 000000429 INF: FPGA: Recv ZSGSRD 36824
17-03-17 23:56:58.428 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:58.428 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:58.428 -07 000000480 INF: FPGA: Recv ZSGSRD 36825
17-03-17 23:56:58.438 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:58.438 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:58.438 -07 000000576 INF: FPGA: Recv ZSGSRD 36833
17-03-17 23:56:58.448 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:58.448 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:58.448 -07 000000433 INF: FPGA: Recv ZSGSRD 36834
17-03-17 23:56:58.458 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:58.458 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:58.458 -07 000000459 INF: FPGA: Recv ZSGSRD 36834
17-03-17 23:56:58.468 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:58.468 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:58.468 -07 000000480 INF: FPGA: Recv ZSGSRD 36832
17-03-17 23:56:58.478 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:58.478 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:58.478 -07 000000627 INF: FPGA: Recv ZSGSRD 36826
17-03-17 23:56:58.488 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:58.488 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:58.488 -07 000000429 INF: FPGA: Recv ZSGSRD 36827
17-03-17 23:56:58.498 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:58.498 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:56:58.498 -07 000000627 INF: FPGA: Recv ZPIEZORD 32909
17-03-17 23:56:58.508 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:58.508 -07 000000475 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.897 V. Piezo Error = -8.7 V.
17-03-17 23:56:58.508 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36830 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36830 (-176.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36824 (-176.0 uncal um), Max = 36834 (-176.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:56:58.508 -07 000000475 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36830, posNoise = 4, negNoise = 6
17-03-17 23:56:58.508 -07 000000475 INF: Z Motor: After move to -0.176915, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:56:58.508 -07 000000475 INF: Z Motor: Settle wait time = 1458 ms, measure time = 102 ms (allowed 150 ms), total time = 1560 ms
17-03-17 23:56:58.508 -07 000000475 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:56:58.558 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-17 23:56:58.558 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:56:58.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:56:58.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:56:58.558 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:56:58.558 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:56:58.558 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:56:58.558 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:56:58.558 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:56:58.558 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:56:58.568 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:56:58.568 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:56:58.578 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:56:58.578 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:56:58.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:56:58.618 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:56:58.918 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:56:58.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:56:58.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:56:58.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:56:58.958 -07 000000627 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:56:58.958 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 23:56:58.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-17 23:56:59.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:56:59.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:56:59.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:56:59.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:56:59.158 -07 000000429 INF: Autofocus start
17-03-17 23:56:59.158 -07 000000429 INF: MeasureProfile start
17-03-17 23:56:59.158 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:56:59.158 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:56:59.168 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:56:59.168 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:56:59.168 -07 000000429 INF: MeasureProfile done
17-03-17 23:56:59.168 -07 000000429 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:56:59.168 -07 000000429 INF: Autofocus finished
17-03-17 23:56:59.368 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:56:59.368 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:56:59.368 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.176927085192191. ----------
17-03-17 23:56:59.368 -07 000000610 INF: Cycle	80	Tile	4	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:56:59.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37127, sync = True, waitForSettling = True)
17-03-17 23:56:59.378 -07 000000610 INF: Z Motor: Moving to -0.169957 mm, started at -0.176927 mm, distance = 6.97 um
17-03-17 23:56:59.378 -07 000000610 INF: FPGA: Xmit ZDACW 37127\n [Z Motor]
17-03-17 23:56:59.378 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:56:59.388 -07 000000610 INF: FPGA: 'ZDACW 37127' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:56:59.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:56:59.388 -07 000000480 INF: FPGA: Recv ZDACR 37127
17-03-17 23:56:59.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:59.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:56:59.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:59.548 -07 000000480 INF: FPGA: Recv ZSGSRD 35751
17-03-17 23:56:59.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:56:59.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:59.558 -07 000000480 INF: FPGA: Recv ZSGSRD 35747
17-03-17 23:56:59.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:59.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:59.568 -07 000000480 INF: FPGA: Recv ZSGSRD 35749
17-03-17 23:56:59.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:59.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:59.578 -07 000000480 INF: FPGA: Recv ZSGSRD 35742
17-03-17 23:56:59.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:59.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:59.588 -07 000000480 INF: FPGA: Recv ZSGSRD 35753
17-03-17 23:56:59.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:59.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:59.598 -07 000000480 INF: FPGA: Recv ZSGSRD 35747
17-03-17 23:56:59.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:59.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:59.608 -07 000000480 INF: FPGA: Recv ZSGSRD 35740
17-03-17 23:56:59.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:59.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:59.618 -07 000000480 INF: FPGA: Recv ZSGSRD 35748
17-03-17 23:56:59.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:59.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:59.628 -07 000000480 INF: FPGA: Recv ZSGSRD 35748
17-03-17 23:56:59.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:59.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:56:59.638 -07 000000480 INF: FPGA: Recv ZSGSRD 35750
17-03-17 23:56:59.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:59.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:56:59.648 -07 000000480 INF: FPGA: Recv ZPIEZORD 31454
17-03-17 23:56:59.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:56:59.658 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.665 V. Piezo Error = -9.5 V.
17-03-17 23:56:59.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35748 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35748 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35740 (-169.1 uncal um), Max = 35753 (-169.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:56:59.658 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35748, posNoise = 5, negNoise = 8
17-03-17 23:56:59.658 -07 000000610 INF: Z Motor: After move to -0.169957, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:56:59.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:56:59.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:56:59.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:56:59.658 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:56:59.658 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:56:59.658 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:56:59.658 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:56:59.668 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:56:59.668 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:56:59.668 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:56:59.668 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:56:59.678 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:56:59.678 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:56:59.688 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:56:59.688 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:56:59.688 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:56:59.688 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:56:59.688 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:56:59.688 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:56:59.698 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 23:56:59.698 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:56:59.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37304 150\n [Camera]
17-03-17 23:56:59.898 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:57:00.938 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:57:00.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:57:00.938 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:00.948 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:00.948 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) start.
17-03-17 23:57:01.338 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:57:01.338 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:57:01.338 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:01.348 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:57:01.348 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:57:01.358 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:57:01.358 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37304 1425
17-03-17 23:57:01.358 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:57:01.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:57:01.358 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:01.358 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:01.358 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:57:01.738 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 23:57:01.738 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:57:01.738 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:01.748 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:57:01.748 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:57:01.778 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:57:01.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:57:01.788 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:01.788 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:57:01.788 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:01.788 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:57:01.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:57:01.788 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:01.788 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:01.788 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:57:01.978 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:57:01.978 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:57:01.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37304 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:57:01.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:57:01.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.169976087654806. ------
17-03-17 23:57:01.978 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:01.978 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17662 mm
17-03-17 23:57:01.978 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:57:01.978 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:01.988 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:57:01.988 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:57:01.988 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38582, sync = True, waitForSettling = False)
17-03-17 23:57:01.988 -07 000000433 INF: Z Motor: Moving to -0.176617 mm, started at -0.169976 mm, distance = -6.64 um
17-03-17 23:57:01.988 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:57:01.988 -07 000000429 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 23:57:01.998 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:01.998 -07 000000442 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:57:02.008 -07 000000433 INF: FPGA: Xmit ZDACW 38582\n [Z Motor]
17-03-17 23:57:02.008 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:57:02.008 -07 000000429 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:02.008 -07 000000429 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:57:02.008 -07 000000429 INF: Y Motor: Moving 1340 steps-16
17-03-17 23:57:02.008 -07 000000442 INF: FPGA: Recv ZDACW
17-03-17 23:57:02.018 -07 000000433 INF: FPGA: 'ZDACW 38582' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:57:02.018 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:02.018 -07 000000442 INF: FPGA: Recv ZDACR 38582
17-03-17 23:57:02.028 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:57:02.028 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:02.028 -07 000000433 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 23:57:02.068 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.955391,
17-03-17 23:57:02.118 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:57:02.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:57:02.188 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:57:02.188 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:57:02.188 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:57:02.188 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:57:02.188 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:02.188 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 23:57:02.188 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:57:02.188 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:02.198 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:57:02.198 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:57:02.198 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 23:57:02.208 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 23:57:02.398 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:57:02.398 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:57:02.438 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:02.448 -07 000000433 INF: FPGA: Recv YRDPOS 129481
17-03-17 23:57:02.458 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:02.458 -07 000000429 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:02.458 -07 000000429 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:57:02.458 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 23:57:03.408 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:04.418 -07 000000480 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:57:04.418 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1000 ms to get response, and 1010 ms overall
17-03-17 23:57:04.418 -07 000000429 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:04.438 -07 000000429 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:57:04.438 -07 000000429 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:57:04.438 -07 000000429 INF: Y Motor: Moved to 63.2236 after 2455 ms (table move)
17-03-17 23:57:04.448 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176617 mm (DAC = 38582)
17-03-17 23:57:04.448 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:04.448 -07 000000623 INF: FPGA: Recv ZSGSRD 36786
17-03-17 23:57:04.458 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:57:04.458 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:04.458 -07 000000442 INF: FPGA: Recv ZSGSRD 36786
17-03-17 23:57:04.468 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:04.468 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:04.468 -07 000000623 INF: FPGA: Recv ZSGSRD 36774
17-03-17 23:57:04.478 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:04.478 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:04.478 -07 000000442 INF: FPGA: Recv ZSGSRD 36781
17-03-17 23:57:04.488 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:04.488 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:04.488 -07 000000576 INF: FPGA: Recv ZSGSRD 36785
17-03-17 23:57:04.498 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:04.498 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:04.498 -07 000000433 INF: FPGA: Recv ZSGSRD 36783
17-03-17 23:57:04.508 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:04.508 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:04.508 -07 000000623 INF: FPGA: Recv ZSGSRD 36779
17-03-17 23:57:04.518 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:04.518 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:04.518 -07 000000576 INF: FPGA: Recv ZSGSRD 36781
17-03-17 23:57:04.528 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:04.528 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:04.528 -07 000000480 INF: FPGA: Recv ZSGSRD 36791
17-03-17 23:57:04.538 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:04.538 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:04.538 -07 000000442 INF: FPGA: Recv ZSGSRD 36783
17-03-17 23:57:04.548 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:04.548 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:04.548 -07 000000623 INF: FPGA: Recv ZPIEZORD 32864
17-03-17 23:57:04.558 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:04.558 -07 000000593 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.887 V. Piezo Error = -8.7 V.
17-03-17 23:57:04.558 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36783 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36783 (-175.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36774 (-175.7 uncal um), Max = 36791 (-175.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:57:04.558 -07 000000593 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36783, posNoise = 8, negNoise = 9
17-03-17 23:57:04.558 -07 000000593 INF: Z Motor: After move to -0.176617, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:04.558 -07 000000593 INF: Z Motor: Settle wait time = 2460 ms, measure time = 108 ms (allowed 150 ms), total time = 2568 ms
17-03-17 23:57:04.558 -07 000000593 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:57:04.608 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2623 ms
17-03-17 23:57:04.608 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:57:04.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:04.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:04.608 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:04.608 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:04.608 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:57:04.608 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:04.608 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:57:04.608 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:57:04.618 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:57:04.618 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:57:04.618 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:57:04.618 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:57:04.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:57:04.668 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:57:04.968 -07 000000442 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:57:04.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:57:04.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:57:04.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1445873368, 0x0, 559484976) start.
17-03-17 23:57:05.008 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:57:05.008 -07 000000442 INF: FPGA: Recv CAMSNAP
17-03-17 23:57:05.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-17 23:57:05.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1445873368, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:57:05.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:05.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:57:05.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:57:05.108 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:05.108 -07 000000429 INF: Autofocus start
17-03-17 23:57:05.108 -07 000000429 INF: MeasureProfile start
17-03-17 23:57:05.108 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:05.118 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:57:05.118 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:57:05.118 -07 000000429 INF: MeasureProfile done
17-03-17 23:57:05.118 -07 000000429 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:57:05.118 -07 000000429 INF: Autofocus finished
17-03-17 23:57:05.318 -07 000000442 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:57:05.318 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:57:05.318 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.176625147221528. ----------
17-03-17 23:57:05.318 -07 000000610 INF: Cycle	80	Tile	5	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:57:05.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37061, sync = True, waitForSettling = True)
17-03-17 23:57:05.328 -07 000000610 INF: Z Motor: Moving to -0.169654 mm, started at -0.176625 mm, distance = 6.97 um
17-03-17 23:57:05.328 -07 000000610 INF: FPGA: Xmit ZDACW 37061\n [Z Motor]
17-03-17 23:57:05.328 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:57:05.338 -07 000000610 INF: FPGA: 'ZDACW 37061' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:05.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:05.338 -07 000000442 INF: FPGA: Recv ZDACR 37061
17-03-17 23:57:05.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:05.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:57:05.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:05.498 -07 000000429 INF: FPGA: Recv ZSGSRD 35702
17-03-17 23:57:05.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:05.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:05.508 -07 000000623 INF: FPGA: Recv ZSGSRD 35703
17-03-17 23:57:05.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:05.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:05.518 -07 000000429 INF: FPGA: Recv ZSGSRD 35702
17-03-17 23:57:05.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:05.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:05.528 -07 000000442 INF: FPGA: Recv ZSGSRD 35696
17-03-17 23:57:05.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:05.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:05.538 -07 000000433 INF: FPGA: Recv ZSGSRD 35700
17-03-17 23:57:05.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:05.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:05.548 -07 000000623 INF: FPGA: Recv ZSGSRD 35702
17-03-17 23:57:05.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:05.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:05.558 -07 000000593 INF: FPGA: Recv ZSGSRD 35695
17-03-17 23:57:05.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:05.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:05.568 -07 000000480 INF: FPGA: Recv ZSGSRD 35703
17-03-17 23:57:05.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:05.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:05.578 -07 000000433 INF: FPGA: Recv ZSGSRD 35700
17-03-17 23:57:05.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:05.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:05.588 -07 000000429 INF: FPGA: Recv ZSGSRD 35703
17-03-17 23:57:05.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:05.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:05.598 -07 000000433 INF: FPGA: Recv ZPIEZORD 31421
17-03-17 23:57:05.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:05.608 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.655 V. Piezo Error = -9.4 V.
17-03-17 23:57:05.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35701 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35702 (-168.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35695 (-168.8 uncal um), Max = 35703 (-168.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:57:05.608 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35701, posNoise = 2, negNoise = 6
17-03-17 23:57:05.608 -07 000000610 INF: Z Motor: After move to -0.169654, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:05.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:57:05.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:05.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:05.608 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:05.608 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:05.608 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:57:05.608 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:05.608 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:57:05.608 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:57:05.608 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:57:05.608 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:57:05.608 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:57:05.608 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:57:05.608 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:57:05.608 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:57:05.618 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:57:05.618 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:57:05.628 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:57:05.628 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:57:05.628 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:57:05.628 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:57:05.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37238 150\n [Camera]
17-03-17 23:57:05.838 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 23:57:06.868 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:57:06.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:57:06.868 -07 000000442 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:06.868 -07 000000442 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:06.868 -07 000000442 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:57:06.878 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:57:06.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:57:06.878 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:06.878 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:06.878 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:57:07.068 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37238 1422
17-03-17 23:57:07.118 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:57:07.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:57:07.218 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:57:07.268 -07 000000442 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:57:07.268 -07 000000442 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:57:07.268 -07 000000442 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:07.268 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:57:07.268 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:57:07.268 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:07.278 -07 000000442 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:57:07.278 -07 000000442 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:57:07.278 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:57:07.278 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:57:07.438 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.970374,
17-03-17 23:57:07.718 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:57:07.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:57:07.718 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:07.718 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:07.718 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:57:07.718 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:57:07.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:57:07.718 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:07.718 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:07.718 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:57:07.908 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:57:07.908 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:57:07.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37238 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall
17-03-17 23:57:07.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:57:07.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.169674149684143. ------
17-03-17 23:57:07.908 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:07.908 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17603 mm
17-03-17 23:57:07.908 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:57:07.918 -07 000000442 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:07.918 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:57:07.918 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:57:07.918 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:57:07.918 -07 000000576 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 23:57:07.918 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38454, sync = True, waitForSettling = False)
17-03-17 23:57:07.918 -07 000000433 INF: Z Motor: Moving to -0.176031 mm, started at -0.169674 mm, distance = -6.36 um
17-03-17 23:57:07.928 -07 000000433 INF: FPGA: Xmit ZDACW 38454\n [Z Motor]
17-03-17 23:57:07.928 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:57:07.938 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:07.938 -07 000000433 INF: FPGA: 'ZDACW 38454' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:57:07.938 -07 000000627 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:57:07.948 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:57:07.948 -07 000000576 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:07.948 -07 000000576 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:57:07.948 -07 000000576 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:57:07.948 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:07.948 -07 000000486 INF: FPGA: Recv ZDACR 38454
17-03-17 23:57:07.958 -07 000000433 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:57:07.958 -07 000000433 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 23:57:07.958 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:57:08.108 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:57:08.108 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:57:08.108 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:08.108 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:57:08.108 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:57:08.108 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:08.118 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:08.118 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:57:08.118 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 23:57:08.118 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:57:08.118 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:57:08.118 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:57:08.328 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:57:08.328 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 23:57:08.378 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:08.378 -07 000000462 INF: FPGA: Recv YRDPOS 131187
17-03-17 23:57:08.388 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:57:08.388 -07 000000576 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:08.388 -07 000000576 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 23:57:08.388 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.162 mm/sec
17-03-17 23:57:09.338 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:09.338 -07 000000475 INF: FPGA: Recv YRDPOS 131188
17-03-17 23:57:09.348 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:09.348 -07 000000576 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:09.368 -07 000000576 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:57:09.368 -07 000000576 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:57:09.368 -07 000000576 INF: Y Motor: Moved to 64.0566 after 1454 ms (table move)
17-03-17 23:57:09.368 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176031 mm (DAC = 38454)
17-03-17 23:57:09.368 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:09.378 -07 000000433 INF: FPGA: Recv ZSGSRD 36698
17-03-17 23:57:09.388 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:09.388 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:09.388 -07 000000442 INF: FPGA: Recv ZSGSRD 36691
17-03-17 23:57:09.398 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:09.398 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:09.398 -07 000000576 INF: FPGA: Recv ZSGSRD 36690
17-03-17 23:57:09.408 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:09.408 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:09.408 -07 000000480 INF: FPGA: Recv ZSGSRD 36692
17-03-17 23:57:09.418 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:09.418 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:09.418 -07 000000486 INF: FPGA: Recv ZSGSRD 36694
17-03-17 23:57:09.428 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:09.428 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:09.428 -07 000000442 INF: FPGA: Recv ZSGSRD 36683
17-03-17 23:57:09.438 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:09.438 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:09.438 -07 000000442 INF: FPGA: Recv ZSGSRD 36692
17-03-17 23:57:09.448 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:09.448 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:09.448 -07 000000442 INF: FPGA: Recv ZSGSRD 36690
17-03-17 23:57:09.458 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:09.458 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:09.458 -07 000000480 INF: FPGA: Recv ZSGSRD 36695
17-03-17 23:57:09.468 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:09.468 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:09.468 -07 000000627 INF: FPGA: Recv ZSGSRD 36694
17-03-17 23:57:09.478 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:09.478 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:09.478 -07 000000627 INF: FPGA: Recv ZPIEZORD 32757
17-03-17 23:57:09.488 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:09.488 -07 000000623 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.868 V. Piezo Error = -8.7 V.
17-03-17 23:57:09.488 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36692 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36692 (-175.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36683 (-175.1 uncal um), Max = 36698 (-175.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:57:09.488 -07 000000623 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36692, posNoise = 6, negNoise = 9
17-03-17 23:57:09.488 -07 000000623 INF: Z Motor: After move to -0.176031, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:09.488 -07 000000623 INF: Z Motor: Settle wait time = 1456 ms, measure time = 111 ms (allowed 150 ms), total time = 1567 ms
17-03-17 23:57:09.488 -07 000000623 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:57:09.528 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-17 23:57:09.528 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:57:09.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:09.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:09.528 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:09.528 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:09.528 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:57:09.528 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:09.528 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:57:09.528 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:57:09.538 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:57:09.538 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:57:09.548 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:57:09.548 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:57:09.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:57:09.598 -07 000000442 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:57:09.898 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:57:09.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:57:09.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:57:09.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) start.
17-03-17 23:57:09.938 -07 000000480 INF: FPGA: Recv @CAMSNAP 381
17-03-17 23:57:09.938 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 23:57:09.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 386 ms overall
17-03-17 23:57:10.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 23:57:10.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:10.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:57:10.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:57:10.038 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:10.038 -07 000000459 INF: Autofocus start
17-03-17 23:57:10.038 -07 000000459 INF: MeasureProfile start
17-03-17 23:57:10.038 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:10.048 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:57:10.048 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:57:10.048 -07 000000459 INF: MeasureProfile done
17-03-17 23:57:10.048 -07 000000459 INF: X=48  Z correction [um]=0.1739867
17-03-17 23:57:10.048 -07 000000459 INF: Autofocus finished
17-03-17 23:57:10.248 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:57:10.248 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:57:10.248 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.176040543916628. ----------
17-03-17 23:57:10.248 -07 000000610 INF: Cycle	80	Tile	6	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:57:10.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37005, sync = True, waitForSettling = True)
17-03-17 23:57:10.258 -07 000000610 INF: Z Motor: Moving to -0.169398 mm, started at -0.176041 mm, distance = 6.64 um
17-03-17 23:57:10.258 -07 000000610 INF: FPGA: Xmit ZDACW 37005\n [Z Motor]
17-03-17 23:57:10.258 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:57:10.268 -07 000000610 INF: FPGA: 'ZDACW 37005' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:10.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:10.268 -07 000000442 INF: FPGA: Recv ZDACR 37005
17-03-17 23:57:10.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:10.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:57:10.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:10.428 -07 000000480 INF: FPGA: Recv ZSGSRD 35662
17-03-17 23:57:10.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:10.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:10.438 -07 000000459 INF: FPGA: Recv ZSGSRD 35662
17-03-17 23:57:10.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:10.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:10.448 -07 000000623 INF: FPGA: Recv ZSGSRD 35659
17-03-17 23:57:10.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:10.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:10.458 -07 000000623 INF: FPGA: Recv ZSGSRD 35660
17-03-17 23:57:10.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:10.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:10.468 -07 000000627 INF: FPGA: Recv ZSGSRD 35660
17-03-17 23:57:10.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:10.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:10.478 -07 000000459 INF: FPGA: Recv ZSGSRD 35663
17-03-17 23:57:10.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:10.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:10.488 -07 000000480 INF: FPGA: Recv ZSGSRD 35658
17-03-17 23:57:10.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:10.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:10.498 -07 000000442 INF: FPGA: Recv ZSGSRD 35660
17-03-17 23:57:10.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:10.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:10.508 -07 000000475 INF: FPGA: Recv ZSGSRD 35656
17-03-17 23:57:10.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:10.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:10.518 -07 000000627 INF: FPGA: Recv ZSGSRD 35666
17-03-17 23:57:10.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:10.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:10.528 -07 000000475 INF: FPGA: Recv ZPIEZORD 31362
17-03-17 23:57:10.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:10.538 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.647 V. Piezo Error = -9.5 V.
17-03-17 23:57:10.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35661 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35660 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35656 (-168.5 uncal um), Max = 35666 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:57:10.538 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35661, posNoise = 5, negNoise = 5
17-03-17 23:57:10.538 -07 000000610 INF: Z Motor: After move to -0.169398, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:10.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:57:10.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:10.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:10.538 -07 000000442 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:10.538 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:10.538 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:57:10.538 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:57:10.538 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:57:10.538 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:10.538 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:57:10.538 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:57:10.538 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:57:10.538 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:57:10.548 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:57:10.548 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:57:10.548 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:57:10.548 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:57:10.558 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:57:10.558 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:57:10.558 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:57:10.558 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:57:10.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37181 150\n [Camera]
17-03-17 23:57:10.768 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:57:11.808 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:57:11.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:57:11.808 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:11.808 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:11.808 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:57:11.808 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:57:11.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:57:11.808 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:11.808 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:11.808 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:57:11.998 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37181 1422
17-03-17 23:57:12.118 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:57:12.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:57:12.148 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:57:12.198 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:57:12.198 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:57:12.198 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:12.208 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:12.208 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:57:12.208 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:57:12.208 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:57:12.208 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:12.208 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:12.218 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:57:12.648 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:57:12.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:57:12.648 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:12.648 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:12.648 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 23:57:12.648 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:57:12.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:57:12.648 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:12.648 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:12.648 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 23:57:12.818 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.988112,
17-03-17 23:57:12.838 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 2268
17-03-17 23:57:12.838 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:57:12.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37181 150' command took 2 ms to send, 2268 ms to get response, and 2277 ms overall
17-03-17 23:57:12.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:57:12.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.169417181198472. ------
17-03-17 23:57:12.848 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17593 mm
17-03-17 23:57:12.848 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:57:12.848 -07 000000442 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:57:12.848 -07 000000442 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 23:57:12.848 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38432, sync = True, waitForSettling = False)
17-03-17 23:57:12.848 -07 000000593 INF: Z Motor: Moving to -0.175930 mm, started at -0.169417 mm, distance = -6.51 um
17-03-17 23:57:12.858 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:12.858 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:12.868 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:57:12.868 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:12.868 -07 000000576 INF: FPGA: Recv YRDPOS 131188
17-03-17 23:57:12.878 -07 000000593 INF: FPGA: Xmit ZDACW 38432\n [Z Motor]
17-03-17 23:57:12.878 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:57:12.878 -07 000000442 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:12.878 -07 000000442 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:57:12.878 -07 000000442 INF: Y Motor: Moving 1338 steps-13
17-03-17 23:57:12.878 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:57:12.888 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:57:12.888 -07 000000593 INF: FPGA: 'ZDACW 38432' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 23:57:12.898 -07 000000442 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:57:12.908 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:12.908 -07 000000429 INF: FPGA: Recv ZDACR 38432
17-03-17 23:57:12.918 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:57:12.918 -07 000000593 INF: Z Motor: MoveAbsStepped took 62 ms (did NOT wait for settling yet))
17-03-17 23:57:13.048 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:57:13.048 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:57:13.048 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:13.048 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:57:13.048 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:57:13.048 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:13.058 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:13.058 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:57:13.058 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:57:13.058 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:57:13.088 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:57:13.088 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:57:13.268 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 23:57:13.268 -07 000000442 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 23:57:13.318 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:13.318 -07 000000480 INF: FPGA: Recv YRDPOS 132870
17-03-17 23:57:13.328 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:57:13.328 -07 000000442 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:13.328 -07 000000442 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:57:13.328 -07 000000442 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.836 mm, average velocity = 2.116 mm/sec
17-03-17 23:57:14.278 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:14.278 -07 000000409 INF: FPGA: Recv YRDPOS 132870
17-03-17 23:57:14.288 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:14.288 -07 000000442 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:14.308 -07 000000442 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:57:14.308 -07 000000442 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:57:14.308 -07 000000442 INF: Y Motor: Moved to 64.8779 after 1461 ms (table move)
17-03-17 23:57:14.318 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175930 mm (DAC = 38432)
17-03-17 23:57:14.318 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:14.318 -07 000000627 INF: FPGA: Recv ZSGSRD 36681
17-03-17 23:57:14.328 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:57:14.328 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:14.328 -07 000000576 INF: FPGA: Recv ZSGSRD 36675
17-03-17 23:57:14.338 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:14.338 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:14.338 -07 000000459 INF: FPGA: Recv ZSGSRD 36671
17-03-17 23:57:14.348 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:14.348 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:14.348 -07 000000623 INF: FPGA: Recv ZSGSRD 36687
17-03-17 23:57:14.358 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:14.358 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:14.358 -07 000000442 INF: FPGA: Recv ZSGSRD 36680
17-03-17 23:57:14.368 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:14.368 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:14.368 -07 000000478 INF: FPGA: Recv ZSGSRD 36671
17-03-17 23:57:14.378 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:14.378 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:14.378 -07 000000593 INF: FPGA: Recv ZSGSRD 36680
17-03-17 23:57:14.388 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:14.388 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:14.388 -07 000000486 INF: FPGA: Recv ZSGSRD 36675
17-03-17 23:57:14.398 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:14.398 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:14.398 -07 000000618 INF: FPGA: Recv ZSGSRD 36672
17-03-17 23:57:14.408 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:14.408 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:14.408 -07 000000459 INF: FPGA: Recv ZSGSRD 36676
17-03-17 23:57:14.418 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:14.418 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:14.418 -07 000000623 INF: FPGA: Recv ZPIEZORD 32692
17-03-17 23:57:14.428 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:14.428 -07 000000475 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.864 V. Piezo Error = -8.8 V.
17-03-17 23:57:14.428 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36677 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36676 (-175.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36671 (-175.0 uncal um), Max = 36687 (-175.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:57:14.428 -07 000000475 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36677, posNoise = 10, negNoise = 6
17-03-17 23:57:14.428 -07 000000475 INF: Z Motor: After move to -0.175930, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:14.428 -07 000000475 INF: Z Motor: Settle wait time = 1465 ms, measure time = 108 ms (allowed 150 ms), total time = 1573 ms
17-03-17 23:57:14.428 -07 000000475 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:57:14.478 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-17 23:57:14.478 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:57:14.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:14.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:14.478 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:14.478 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:14.478 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:57:14.478 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:14.488 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:57:14.488 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:57:14.488 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:57:14.488 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:57:14.498 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:57:14.498 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:57:14.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:57:14.538 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:57:14.838 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:57:14.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:57:14.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:57:14.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 23:57:14.878 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:57:14.878 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:57:14.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-17 23:57:14.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:57:14.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:14.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:57:14.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:57:15.078 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:15.078 -07 000000623 INF: Autofocus start
17-03-17 23:57:15.078 -07 000000623 INF: MeasureProfile start
17-03-17 23:57:15.078 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:15.088 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:57:15.088 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:57:15.088 -07 000000623 INF: MeasureProfile done
17-03-17 23:57:15.088 -07 000000623 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:57:15.088 -07 000000623 INF: Autofocus finished
17-03-17 23:57:15.288 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:57:15.288 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:57:15.288 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.175944180734502. ----------
17-03-17 23:57:15.288 -07 000000610 INF: Cycle	80	Tile	7	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:57:15.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36929, sync = True, waitForSettling = True)
17-03-17 23:57:15.298 -07 000000610 INF: Z Motor: Moving to -0.169050 mm, started at -0.175944 mm, distance = 6.89 um
17-03-17 23:57:15.298 -07 000000610 INF: FPGA: Xmit ZDACW 36929\n [Z Motor]
17-03-17 23:57:15.298 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 23:57:15.308 -07 000000610 INF: FPGA: 'ZDACW 36929' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:57:15.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:15.308 -07 000000623 INF: FPGA: Recv ZDACR 36929
17-03-17 23:57:15.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:15.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:57:15.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:15.468 -07 000000482 INF: FPGA: Recv ZSGSRD 35606
17-03-17 23:57:15.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:15.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:15.478 -07 000000512 INF: FPGA: Recv ZSGSRD 35604
17-03-17 23:57:15.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:15.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:15.488 -07 000000459 INF: FPGA: Recv ZSGSRD 35608
17-03-17 23:57:15.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:15.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:15.498 -07 000000512 INF: FPGA: Recv ZSGSRD 35601
17-03-17 23:57:15.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:15.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:15.508 -07 000000459 INF: FPGA: Recv ZSGSRD 35602
17-03-17 23:57:15.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:15.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:15.518 -07 000000593 INF: FPGA: Recv ZSGSRD 35609
17-03-17 23:57:15.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:15.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:15.528 -07 000000482 INF: FPGA: Recv ZSGSRD 35602
17-03-17 23:57:15.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:15.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:15.538 -07 000000593 INF: FPGA: Recv ZSGSRD 35596
17-03-17 23:57:15.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:15.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:15.548 -07 000000482 INF: FPGA: Recv ZSGSRD 35605
17-03-17 23:57:15.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:15.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:15.558 -07 000000512 INF: FPGA: Recv ZSGSRD 35608
17-03-17 23:57:15.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:15.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:15.568 -07 000000482 INF: FPGA: Recv ZPIEZORD 31297
17-03-17 23:57:15.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:15.578 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.635 V. Piezo Error = -9.5 V.
17-03-17 23:57:15.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35604 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35604 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35596 (-168.1 uncal um), Max = 35609 (-168.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:57:15.578 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35604, posNoise = 5, negNoise = 8
17-03-17 23:57:15.578 -07 000000610 INF: Z Motor: After move to -0.169050, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:15.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:57:15.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:15.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:15.578 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:15.578 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:15.578 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:57:15.578 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:15.578 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:57:15.578 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:57:15.578 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:57:15.578 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:57:15.578 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:57:15.578 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:57:15.588 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:57:15.588 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:57:15.588 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:57:15.588 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:57:15.598 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:57:15.598 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:57:15.598 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:57:15.598 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:57:15.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37106 150\n [Camera]
17-03-17 23:57:15.808 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 23:57:16.838 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:57:16.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:57:16.838 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:16.838 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:16.838 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:57:16.848 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:57:16.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:57:16.848 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:16.848 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:16.848 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 23:57:17.038 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37106 1422
17-03-17 23:57:17.118 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:57:17.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:57:17.178 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:57:17.238 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:57:17.238 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:57:17.238 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:17.248 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:17.248 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:57:17.248 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:57:17.248 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:57:17.248 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:17.248 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:57:17.258 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:57:17.688 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:57:17.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:57:17.688 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:17.688 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:17.688 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 23:57:17.688 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:57:17.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:57:17.688 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:17.688 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:17.688 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 23:57:17.878 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:57:17.878 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:57:17.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37106 150' command took 2 ms to send, 2262 ms to get response, and 2271 ms overall
17-03-17 23:57:17.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:57:17.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.169051001106392. ------
17-03-17 23:57:17.878 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17548 mm
17-03-17 23:57:17.878 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:57:17.888 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:17.888 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38333, sync = True, waitForSettling = False)
17-03-17 23:57:17.888 -07 000000623 INF: Z Motor: Moving to -0.175477 mm, started at -0.169051 mm, distance = -6.43 um
17-03-17 23:57:17.888 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:57:17.888 -07 000000475 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-17 23:57:17.888 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:17.898 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:57:17.898 -07 000000623 INF: FPGA: Xmit ZDACW 38333\n [Z Motor]
17-03-17 23:57:17.898 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:57:17.908 -07 000000623 INF: FPGA: 'ZDACW 38333' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:57:17.918 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:17.918 -07 000000429 INF: FPGA: Recv YRDPOS 132871
17-03-17 23:57:17.928 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:57:17.928 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-17 23:57:17.928 -07 000000475 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:17.928 -07 000000475 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:57:17.928 -07 000000475 INF: Y Motor: Moving 1351 steps-30
17-03-17 23:57:17.938 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:17.938 -07 000000429 INF: FPGA: Recv ZDACR 38333
17-03-17 23:57:17.948 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 23:57:17.948 -07 000000623 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-17 23:57:17.958 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:57:18.088 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:57:18.088 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:57:18.088 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:18.088 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:57:18.088 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:57:18.088 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:18.088 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:18.098 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:57:18.098 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 23:57:18.098 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:57:18.128 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:57:18.128 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 23:57:18.178 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.969015,
17-03-17 23:57:18.328 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 23:57:18.328 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 404 ms overall
17-03-17 23:57:18.378 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:18.378 -07 000000382 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:57:18.388 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:57:18.388 -07 000000475 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:18.388 -07 000000475 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:57:18.388 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.845 mm, average velocity = 2.091 mm/sec
17-03-17 23:57:19.338 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:19.338 -07 000000618 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:57:19.348 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:19.348 -07 000000475 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:19.378 -07 000000475 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:57:19.378 -07 000000475 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:57:19.378 -07 000000475 INF: Y Motor: Moved to 65.7134 after 1490 ms (table move)
17-03-17 23:57:19.378 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175477 mm (DAC = 38333)
17-03-17 23:57:19.378 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:19.378 -07 000000618 INF: FPGA: Recv ZSGSRD 36603
17-03-17 23:57:19.388 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:57:19.388 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:19.388 -07 000000475 INF: FPGA: Recv ZSGSRD 36610
17-03-17 23:57:19.398 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:19.398 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:19.398 -07 000000623 INF: FPGA: Recv ZSGSRD 36611
17-03-17 23:57:19.408 -07 000000576 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:19.408 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:19.408 -07 000000429 INF: FPGA: Recv ZSGSRD 36608
17-03-17 23:57:19.418 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:19.418 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:19.418 -07 000000475 INF: FPGA: Recv ZSGSRD 36603
17-03-17 23:57:19.428 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:19.428 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:19.428 -07 000000623 INF: FPGA: Recv ZSGSRD 36602
17-03-17 23:57:19.438 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:19.438 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:19.438 -07 000000480 INF: FPGA: Recv ZSGSRD 36613
17-03-17 23:57:19.448 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:19.448 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:19.448 -07 000000593 INF: FPGA: Recv ZSGSRD 36603
17-03-17 23:57:19.458 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:19.458 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:19.458 -07 000000593 INF: FPGA: Recv ZSGSRD 36606
17-03-17 23:57:19.468 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:19.468 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:19.468 -07 000000593 INF: FPGA: Recv ZSGSRD 36612
17-03-17 23:57:19.478 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:19.478 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:19.478 -07 000000429 INF: FPGA: Recv ZPIEZORD 32649
17-03-17 23:57:19.488 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:19.488 -07 000000576 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.849 V. Piezo Error = -8.7 V.
17-03-17 23:57:19.488 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36607 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36607 (-174.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36602 (-174.6 uncal um), Max = 36613 (-174.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:57:19.488 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36607, posNoise = 6, negNoise = 5
17-03-17 23:57:19.488 -07 000000576 INF: Z Motor: After move to -0.175477, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:19.488 -07 000000576 INF: Z Motor: Settle wait time = 1494 ms, measure time = 103 ms (allowed 150 ms), total time = 1597 ms
17-03-17 23:57:19.488 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 23:57:19.538 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1653 ms
17-03-17 23:57:19.538 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:57:19.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:19.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:19.538 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:19.538 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:19.538 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:57:19.538 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:19.538 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:57:19.538 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:57:19.548 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:57:19.548 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:57:19.558 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 23:57:19.558 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:57:19.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:57:19.598 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:57:19.898 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:57:19.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:57:19.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:57:19.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 23:57:19.938 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:57:19.938 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 23:57:19.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-17 23:57:20.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:57:20.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:20.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:57:20.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:57:20.138 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:20.138 -07 000000593 INF: Autofocus start
17-03-17 23:57:20.138 -07 000000593 INF: MeasureProfile start
17-03-17 23:57:20.138 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:20.148 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:57:20.148 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:57:20.148 -07 000000593 INF: MeasureProfile done
17-03-17 23:57:20.148 -07 000000593 INF: X=48  Z correction [um]=0.1739867
17-03-17 23:57:20.148 -07 000000593 INF: Autofocus finished
17-03-17 23:57:20.348 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:57:20.348 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:57:20.348 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175494485884578. ----------
17-03-17 23:57:20.348 -07 000000610 INF: Cycle	80	Tile	8	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:57:20.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36883, sync = True, waitForSettling = True)
17-03-17 23:57:20.358 -07 000000610 INF: Z Motor: Moving to -0.168840 mm, started at -0.175494 mm, distance = 6.65 um
17-03-17 23:57:20.358 -07 000000610 INF: FPGA: Xmit ZDACW 36883\n [Z Motor]
17-03-17 23:57:20.358 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 23:57:20.368 -07 000000610 INF: FPGA: 'ZDACW 36883' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:57:20.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:20.368 -07 000000618 INF: FPGA: Recv ZDACR 36883
17-03-17 23:57:20.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:20.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:57:20.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:20.528 -07 000000429 INF: FPGA: Recv ZSGSRD 35576
17-03-17 23:57:20.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:20.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:20.538 -07 000000593 INF: FPGA: Recv ZSGSRD 35570
17-03-17 23:57:20.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:20.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:20.548 -07 000000429 INF: FPGA: Recv ZSGSRD 35573
17-03-17 23:57:20.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:20.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:20.558 -07 000000623 INF: FPGA: Recv ZSGSRD 35572
17-03-17 23:57:20.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:20.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:20.568 -07 000000409 INF: FPGA: Recv ZSGSRD 35575
17-03-17 23:57:20.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:20.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:20.578 -07 000000623 INF: FPGA: Recv ZSGSRD 35577
17-03-17 23:57:20.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:20.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:20.588 -07 000000475 INF: FPGA: Recv ZSGSRD 35571
17-03-17 23:57:20.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:20.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:20.598 -07 000000409 INF: FPGA: Recv ZSGSRD 35572
17-03-17 23:57:20.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:20.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:20.608 -07 000000429 INF: FPGA: Recv ZSGSRD 35578
17-03-17 23:57:20.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:20.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:20.618 -07 000000409 INF: FPGA: Recv ZSGSRD 35574
17-03-17 23:57:20.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:20.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:20.628 -07 000000429 INF: FPGA: Recv ZPIEZORD 31257
17-03-17 23:57:20.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:20.638 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -9.5 V.
17-03-17 23:57:20.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35574 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35574 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35570 (-168.0 uncal um), Max = 35578 (-168.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:57:20.638 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35574, posNoise = 4, negNoise = 4
17-03-17 23:57:20.638 -07 000000610 INF: Z Motor: After move to -0.168840, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:20.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:57:20.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:20.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:20.638 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:20.638 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:20.638 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:57:20.638 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:20.638 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:57:20.638 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:57:20.638 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:57:20.638 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:57:20.638 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:57:20.638 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:57:20.648 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:57:20.648 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:57:20.648 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:57:20.648 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:57:20.658 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:57:20.658 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:57:20.658 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:57:20.658 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:57:20.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37060 150\n [Camera]
17-03-17 23:57:20.868 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:57:21.898 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:57:21.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:57:21.898 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:21.898 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:21.898 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 23:57:21.908 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:57:21.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:57:21.908 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:21.908 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:21.908 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 23:57:22.098 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37060 1422
17-03-17 23:57:22.118 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:57:22.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:57:22.248 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:57:22.298 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:57:22.298 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:57:22.298 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:22.308 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:22.308 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:57:22.308 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:57:22.308 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:57:22.308 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:22.308 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:22.318 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:57:22.748 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:57:22.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:57:22.748 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:22.888 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:57:22.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:57:22.888 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:22.888 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:22.888 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 23:57:22.898 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:22.898 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:57:22.938 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:57:22.938 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:57:22.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37060 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall
17-03-17 23:57:22.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:57:22.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.168858274742139. ------
17-03-17 23:57:22.938 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:22.938 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17534 mm
17-03-17 23:57:22.938 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:57:22.948 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:57:22.948 -07 000000429 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 23:57:22.948 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:22.948 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38303, sync = True, waitForSettling = False)
17-03-17 23:57:22.948 -07 000000475 INF: Z Motor: Moving to -0.175340 mm, started at -0.168858 mm, distance = -6.48 um
17-03-17 23:57:22.968 -07 000000475 INF: FPGA: Xmit ZDACW 38303\n [Z Motor]
17-03-17 23:57:23.278 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:57:23.278 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 23:57:23.278 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:23.278 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:57:23.278 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:57:23.278 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:23.278 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:57:23.288 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:23.288 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 538 ms.
17-03-17 23:57:23.288 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:57:23.298 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:23.298 -07 000000593 INF: FPGA: Recv YRDPOS 134582
17-03-17 23:57:23.298 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:57:23.298 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 349 ms to get response, and 358 ms overall
17-03-17 23:57:23.298 -07 000000429 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:23.298 -07 000000475 INF: FPGA: 'ZDACW 38303' command took 0 ms to send, 329 ms to get response, and 357 ms overall
17-03-17 23:57:23.298 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:23.308 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 359 ms to get response, and 361 ms overall
17-03-17 23:57:23.308 -07 000000593 INF: FPGA: Recv ZDACR 38303
17-03-17 23:57:23.308 -07 000000429 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:57:23.308 -07 000000429 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:57:23.318 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:23.318 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:57:23.318 -07 000000475 INF: Z Motor: MoveAbsStepped took 368 ms (did NOT wait for settling yet))
17-03-17 23:57:23.328 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:57:23.528 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:57:23.528 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:57:23.608 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.994908,
17-03-17 23:57:23.688 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 23:57:23.688 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 23:57:23.738 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:23.738 -07 000000459 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:57:23.748 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:23.748 -07 000000429 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:23.748 -07 000000429 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:57:23.748 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.839 mm, average velocity = 2.191 mm/sec
17-03-17 23:57:24.698 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:24.698 -07 000000478 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:57:24.708 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:24.708 -07 000000429 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:24.728 -07 000000429 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:57:24.728 -07 000000429 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:57:24.728 -07 000000429 INF: Y Motor: Moved to 66.5386 after 1787 ms (table move)
17-03-17 23:57:24.738 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175340 mm (DAC = 38303)
17-03-17 23:57:24.738 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:24.738 -07 000000459 INF: FPGA: Recv ZSGSRD 36587
17-03-17 23:57:24.748 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:57:24.748 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:24.748 -07 000000429 INF: FPGA: Recv ZSGSRD 36593
17-03-17 23:57:24.758 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:24.758 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:24.758 -07 000000459 INF: FPGA: Recv ZSGSRD 36597
17-03-17 23:57:24.768 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:24.768 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:24.768 -07 000000409 INF: FPGA: Recv ZSGSRD 36594
17-03-17 23:57:24.778 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:24.778 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:24.778 -07 000000478 INF: FPGA: Recv ZSGSRD 36592
17-03-17 23:57:24.788 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:24.788 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:24.788 -07 000000627 INF: FPGA: Recv ZSGSRD 36583
17-03-17 23:57:24.798 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:24.798 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:24.798 -07 000000478 INF: FPGA: Recv ZSGSRD 36571
17-03-17 23:57:24.808 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:24.808 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:24.808 -07 000000627 INF: FPGA: Recv ZSGSRD 36579
17-03-17 23:57:24.818 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:24.818 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:24.818 -07 000000478 INF: FPGA: Recv ZSGSRD 36581
17-03-17 23:57:24.828 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:24.828 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:24.828 -07 000000627 INF: FPGA: Recv ZSGSRD 36590
17-03-17 23:57:24.838 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:24.838 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:24.838 -07 000000442 INF: FPGA: Recv ZPIEZORD 32580
17-03-17 23:57:24.848 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:24.848 -07 000000623 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.845 V. Piezo Error = -8.8 V.
17-03-17 23:57:24.848 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36587 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36588 (-174.5 uncal um), StdDev = 8 (0.1 uncal um), Range = 26 (0.2 uncal um), Min = 36571 (-174.4 uncal um), Max = 36597 (-174.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 16 (0.1 uncal um)
17-03-17 23:57:24.848 -07 000000623 INF: Z Motor: ADC noise = 16, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36587, posNoise = 10, negNoise = 16
17-03-17 23:57:24.848 -07 000000623 INF: Z Motor: After move to -0.175340, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:24.848 -07 000000623 INF: Z Motor: Settle wait time = 1789 ms, measure time = 109 ms (allowed 150 ms), total time = 1898 ms
17-03-17 23:57:24.848 -07 000000623 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:57:24.898 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1951 ms
17-03-17 23:57:24.898 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:57:24.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:24.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:24.898 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:24.898 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:24.898 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:57:24.898 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:24.898 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:57:24.898 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:57:24.908 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:57:24.908 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:57:24.918 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:57:24.918 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:57:24.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:57:24.968 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:57:25.268 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:57:25.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:57:25.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:57:25.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-17 23:57:25.308 -07 000000429 INF: FPGA: Recv @CAMSNAP 382
17-03-17 23:57:25.308 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 23:57:25.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 385 ms to get response, and 388 ms overall
17-03-17 23:57:25.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:57:25.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:25.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:57:25.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:57:25.408 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:25.408 -07 000000618 INF: Autofocus start
17-03-17 23:57:25.408 -07 000000618 INF: MeasureProfile start
17-03-17 23:57:25.408 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:25.418 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:57:25.418 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:57:25.418 -07 000000618 INF: MeasureProfile done
17-03-17 23:57:25.418 -07 000000618 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:57:25.418 -07 000000618 INF: Autofocus finished
17-03-17 23:57:25.618 -07 000000442 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:57:25.618 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:57:25.618 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175366001641743. ----------
17-03-17 23:57:25.618 -07 000000610 INF: Cycle	80	Tile	9	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:57:25.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36783, sync = True, waitForSettling = True)
17-03-17 23:57:25.628 -07 000000610 INF: Z Motor: Moving to -0.168382 mm, started at -0.175366 mm, distance = 6.98 um
17-03-17 23:57:25.628 -07 000000610 INF: FPGA: Xmit ZDACW 36783\n [Z Motor]
17-03-17 23:57:25.628 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:57:25.638 -07 000000610 INF: FPGA: 'ZDACW 36783' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:25.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:25.638 -07 000000409 INF: FPGA: Recv ZDACR 36783
17-03-17 23:57:25.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:25.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:57:25.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:25.798 -07 000000627 INF: FPGA: Recv ZSGSRD 35503
17-03-17 23:57:25.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:25.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:25.808 -07 000000409 INF: FPGA: Recv ZSGSRD 35503
17-03-17 23:57:25.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:25.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:25.818 -07 000000478 INF: FPGA: Recv ZSGSRD 35501
17-03-17 23:57:25.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:25.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:25.828 -07 000000627 INF: FPGA: Recv ZSGSRD 35501
17-03-17 23:57:25.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:25.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:25.838 -07 000000462 INF: FPGA: Recv ZSGSRD 35503
17-03-17 23:57:25.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:25.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:25.848 -07 000000593 INF: FPGA: Recv ZSGSRD 35500
17-03-17 23:57:25.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:25.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:25.858 -07 000000459 INF: FPGA: Recv ZSGSRD 35504
17-03-17 23:57:25.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:25.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:25.868 -07 000000627 INF: FPGA: Recv ZSGSRD 35505
17-03-17 23:57:25.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:57:25.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:25.878 -07 000000409 INF: FPGA: Recv ZSGSRD 35504
17-03-17 23:57:25.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:25.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:25.888 -07 000000433 INF: FPGA: Recv ZSGSRD 35503
17-03-17 23:57:25.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:25.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:25.898 -07 000000409 INF: FPGA: Recv ZPIEZORD 31168
17-03-17 23:57:25.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:25.908 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.613 V. Piezo Error = -9.5 V.
17-03-17 23:57:25.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35503 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35503 (-167.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35500 (-167.5 uncal um), Max = 35505 (-167.5 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:57:25.908 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35503, posNoise = 2, negNoise = 3
17-03-17 23:57:25.908 -07 000000610 INF: Z Motor: After move to -0.168382, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:25.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:57:25.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:25.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:25.908 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:25.908 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:57:25.908 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:57:25.908 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:25.908 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:57:25.908 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:25.908 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:57:25.908 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:57:25.908 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:57:25.908 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:57:25.908 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:57:25.908 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:57:25.918 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:57:25.918 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:57:25.928 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:57:25.928 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:57:25.928 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:57:25.928 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:57:25.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36960 150\n [Camera]
17-03-17 23:57:26.138 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:57:27.118 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:57:27.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:57:27.168 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:57:27.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:57:27.178 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:27.178 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:57:27.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:57:27.178 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:27.178 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:27.178 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 23:57:27.178 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:27.178 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2336209168, 0x0, 391868352) start.
17-03-17 23:57:27.368 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36960 1422
17-03-17 23:57:27.518 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:57:27.578 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:57:27.578 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:57:27.578 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:27.578 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2336209168, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:57:27.578 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:57:27.578 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:27.578 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:27.588 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:27.588 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:57:27.588 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:57:28.018 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:57:28.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:57:28.018 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:28.128 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:57:28.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:57:28.128 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:28.128 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:28.128 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2331803864, 0x0, 418435064) start.
17-03-17 23:57:28.138 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:28.138 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:57:28.208 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 2267
17-03-17 23:57:28.208 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:57:28.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36960 150' command took 2 ms to send, 2266 ms to get response, and 2276 ms overall
17-03-17 23:57:28.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:57:28.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168402155680074. ------
17-03-17 23:57:28.218 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:28.218 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17512 mm
17-03-17 23:57:28.218 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:57:28.218 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:57:28.218 -07 000000459 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 23:57:28.218 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38255, sync = True, waitForSettling = False)
17-03-17 23:57:28.218 -07 000000486 INF: Z Motor: Moving to -0.175120 mm, started at -0.168402 mm, distance = -6.72 um
17-03-17 23:57:28.228 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:28.238 -07 000000486 INF: FPGA: Xmit ZDACW 38255\n [Z Motor]
17-03-17 23:57:28.518 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2331803864, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 23:57:28.518 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:57:28.518 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:28.518 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:28.528 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:57:28.528 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:57:28.528 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:28.528 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:57:28.538 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:57:28.538 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 23:57:28.538 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:28.538 -07 000000618 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:57:28.538 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:57:28.538 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 318 ms to get response, and 326 ms overall
17-03-17 23:57:28.538 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 308 ms to get response, and 324 ms overall
17-03-17 23:57:28.538 -07 000000459 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:28.538 -07 000000459 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:57:28.538 -07 000000459 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:57:28.548 -07 000000486 INF: FPGA: 'ZDACW 38255' command took 0 ms to send, 298 ms to get response, and 323 ms overall
17-03-17 23:57:28.548 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:57:28.558 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:28.558 -07 000000462 INF: FPGA: Recv ZDACR 38255
17-03-17 23:57:28.568 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:57:28.568 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:57:28.568 -07 000000486 INF: Z Motor: MoveAbsStepped took 344 ms (did NOT wait for settling yet))
17-03-17 23:57:28.748 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:57:28.748 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 23:57:28.938 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 23:57:28.938 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 23:57:28.968 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.977204,
17-03-17 23:57:28.998 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:28.998 -07 000000486 INF: FPGA: Recv YRDPOS 137976
17-03-17 23:57:29.008 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:57:29.008 -07 000000459 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:29.008 -07 000000459 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-17 23:57:29.008 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 23:57:29.958 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:29.958 -07 000000486 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:57:29.968 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:29.968 -07 000000459 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:29.988 -07 000000459 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:57:29.988 -07 000000459 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:57:29.988 -07 000000459 INF: Y Motor: Moved to 67.3716 after 1771 ms (table move)
17-03-17 23:57:29.988 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175120 mm (DAC = 38255)
17-03-17 23:57:29.988 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:29.998 -07 000000486 INF: FPGA: Recv ZSGSRD 36561
17-03-17 23:57:30.008 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:30.008 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:30.008 -07 000000462 INF: FPGA: Recv ZSGSRD 36543
17-03-17 23:57:30.018 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:30.018 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:30.018 -07 000000486 INF: FPGA: Recv ZSGSRD 36555
17-03-17 23:57:30.028 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:30.028 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:30.028 -07 000000462 INF: FPGA: Recv ZSGSRD 36550
17-03-17 23:57:30.038 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:30.038 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:30.038 -07 000000459 INF: FPGA: Recv ZSGSRD 36550
17-03-17 23:57:30.048 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:30.048 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:30.048 -07 000000409 INF: FPGA: Recv ZSGSRD 36548
17-03-17 23:57:30.058 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:30.058 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:30.058 -07 000000486 INF: FPGA: Recv ZSGSRD 36547
17-03-17 23:57:30.068 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:30.068 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:30.068 -07 000000576 INF: FPGA: Recv ZSGSRD 36553
17-03-17 23:57:30.078 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:30.078 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:30.078 -07 000000486 INF: FPGA: Recv ZSGSRD 36550
17-03-17 23:57:30.088 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:30.088 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:30.088 -07 000000382 INF: FPGA: Recv ZSGSRD 36553
17-03-17 23:57:30.098 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:30.098 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:30.098 -07 000000462 INF: FPGA: Recv ZPIEZORD 32562
17-03-17 23:57:30.108 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:30.108 -07 000000475 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.837 V. Piezo Error = -8.8 V.
17-03-17 23:57:30.108 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36551 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36550 (-174.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36543 (-174.2 uncal um), Max = 36561 (-174.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:57:30.108 -07 000000475 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36551, posNoise = 10, negNoise = 8
17-03-17 23:57:30.108 -07 000000475 INF: Z Motor: After move to -0.175120, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:30.108 -07 000000475 INF: Z Motor: Settle wait time = 1774 ms, measure time = 111 ms (allowed 150 ms), total time = 1885 ms
17-03-17 23:57:30.108 -07 000000475 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:57:30.148 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1927 ms
17-03-17 23:57:30.148 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:57:30.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:30.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:30.148 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:30.148 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:30.148 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:57:30.148 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:30.148 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:57:30.148 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:57:30.158 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:57:30.158 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:57:30.168 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:57:30.168 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:57:30.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:57:30.218 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:57:30.518 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:57:30.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:57:30.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:57:30.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 23:57:30.558 -07 000000409 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:57:30.558 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 23:57:30.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-17 23:57:30.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:57:30.648 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:30.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:57:30.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:57:30.658 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:30.658 -07 000000462 INF: Autofocus start
17-03-17 23:57:30.658 -07 000000462 INF: MeasureProfile start
17-03-17 23:57:30.658 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:30.668 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:57:30.668 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:57:30.668 -07 000000462 INF: MeasureProfile done
17-03-17 23:57:30.668 -07 000000462 INF: X=48  Z correction [um]=0.1739867
17-03-17 23:57:30.668 -07 000000462 INF: Autofocus finished
17-03-17 23:57:30.868 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:57:30.868 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:57:30.868 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.17513473000464. ----------
17-03-17 23:57:30.868 -07 000000610 INF: Cycle	80	Tile	10	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:57:30.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36805, sync = True, waitForSettling = True)
17-03-17 23:57:30.878 -07 000000610 INF: Z Motor: Moving to -0.168482 mm, started at -0.175135 mm, distance = 6.65 um
17-03-17 23:57:30.878 -07 000000610 INF: FPGA: Xmit ZDACW 36805\n [Z Motor]
17-03-17 23:57:30.878 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:57:30.888 -07 000000610 INF: FPGA: 'ZDACW 36805' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:57:30.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:30.888 -07 000000409 INF: FPGA: Recv ZDACR 36805
17-03-17 23:57:30.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:30.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:57:31.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:31.048 -07 000000482 INF: FPGA: Recv ZSGSRD 35516
17-03-17 23:57:31.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:31.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:31.058 -07 000000382 INF: FPGA: Recv ZSGSRD 35517
17-03-17 23:57:31.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:31.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:31.068 -07 000000482 INF: FPGA: Recv ZSGSRD 35516
17-03-17 23:57:31.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:31.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:31.078 -07 000000382 INF: FPGA: Recv ZSGSRD 35515
17-03-17 23:57:31.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:31.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:31.088 -07 000000486 INF: FPGA: Recv ZSGSRD 35521
17-03-17 23:57:31.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:31.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:31.098 -07 000000576 INF: FPGA: Recv ZSGSRD 35520
17-03-17 23:57:31.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:31.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:31.108 -07 000000382 INF: FPGA: Recv ZSGSRD 35513
17-03-17 23:57:31.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:31.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:31.118 -07 000000576 INF: FPGA: Recv ZSGSRD 35515
17-03-17 23:57:31.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:31.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:31.128 -07 000000459 INF: FPGA: Recv ZSGSRD 35520
17-03-17 23:57:31.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:31.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:31.138 -07 000000462 INF: FPGA: Recv ZSGSRD 35519
17-03-17 23:57:31.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:31.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:31.148 -07 000000486 INF: FPGA: Recv ZPIEZORD 31201
17-03-17 23:57:31.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:31.158 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -9.5 V.
17-03-17 23:57:31.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35517 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35516 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35513 (-167.6 uncal um), Max = 35521 (-167.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:57:31.158 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35517, posNoise = 4, negNoise = 4
17-03-17 23:57:31.158 -07 000000610 INF: Z Motor: After move to -0.168482, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:31.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:57:31.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:31.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:31.158 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:31.158 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:57:31.158 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:57:31.158 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:31.158 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:57:31.158 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:31.158 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:57:31.158 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:57:31.158 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:57:31.158 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:57:31.168 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:57:31.168 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:57:31.168 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:57:31.168 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:57:31.178 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:57:31.178 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:57:31.178 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:57:31.178 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:57:31.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36982 150\n [Camera]
17-03-17 23:57:31.378 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:57:32.118 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:57:32.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:57:32.418 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:57:32.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:57:32.418 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:32.418 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:32.418 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2367226128, 0x0, 391868352) start.
17-03-17 23:57:32.418 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:57:32.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:57:32.428 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:32.428 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:32.428 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:57:32.608 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36982 1422
17-03-17 23:57:32.758 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:57:32.808 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 23:57:32.808 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:57:32.808 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:32.818 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:32.818 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2367226128, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:57:32.818 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:57:32.818 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:32.818 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:32.818 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:57:32.818 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:57:33.258 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:57:33.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:57:33.268 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:33.378 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:57:33.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:57:33.378 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:33.378 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:33.378 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:57:33.378 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:33.378 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:57:33.458 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:57:33.458 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:57:33.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36982 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:57:33.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:57:33.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.168492094650059. ------
17-03-17 23:57:33.458 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:33.458 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17484 mm
17-03-17 23:57:33.458 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:57:33.458 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:57:33.458 -07 000000480 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 23:57:33.468 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:33.788 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 23:57:33.788 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:57:33.788 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:57:33.788 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:33.788 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:57:33.788 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:33.788 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:57:33.788 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-17 23:57:33.788 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:57:33.798 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:57:33.798 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 38193, sync = True, waitForSettling = False)
17-03-17 23:57:33.798 -07 000000409 INF: Z Motor: Moving to -0.174836 mm, started at -0.168492 mm, distance = -6.34 um
17-03-17 23:57:33.798 -07 000000409 INF: FPGA: Xmit ZDACW 38193\n [Z Motor]
17-03-17 23:57:33.808 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:33.808 -07 000000576 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:57:33.808 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 332 ms to get response, and 343 ms overall
17-03-17 23:57:33.808 -07 000000480 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:33.808 -07 000000480 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:57:33.808 -07 000000480 INF: Y Motor: Moving 1346 steps-24
17-03-17 23:57:33.808 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:57:33.808 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 342 ms to get response, and 346 ms overall
17-03-17 23:57:33.808 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:57:33.808 -07 000000409 INF: FPGA: 'ZDACW 38193' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 23:57:33.818 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:57:33.828 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:33.828 -07 000000576 INF: FPGA: Recv ZDACR 38193
17-03-17 23:57:33.838 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:57:33.838 -07 000000409 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 23:57:34.018 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:57:34.018 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 23:57:34.188 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:57:34.188 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-17 23:57:34.228 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:34.228 -07 000000409 INF: FPGA: Recv YRDPOS 139683
17-03-17 23:57:34.238 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:57:34.238 -07 000000480 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:34.238 -07 000000480 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 23:57:34.238 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.841 mm, average velocity = 2.225 mm/sec
17-03-17 23:57:34.348 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.999021,
17-03-17 23:57:35.188 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:35.188 -07 000000512 INF: FPGA: Recv YRDPOS 139683
17-03-17 23:57:35.198 -07 000000480 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:35.198 -07 000000480 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:35.218 -07 000000480 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:57:35.218 -07 000000480 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:57:35.218 -07 000000480 INF: Y Motor: Moved to 68.2046 after 1757 ms (table move)
17-03-17 23:57:35.218 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174836 mm (DAC = 38193)
17-03-17 23:57:35.228 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:35.228 -07 000000576 INF: FPGA: Recv ZSGSRD 36511
17-03-17 23:57:35.238 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:35.238 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:35.238 -07 000000409 INF: FPGA: Recv ZSGSRD 36506
17-03-17 23:57:35.248 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:35.248 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:35.248 -07 000000512 INF: FPGA: Recv ZSGSRD 36500
17-03-17 23:57:35.258 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:35.258 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:35.258 -07 000000576 INF: FPGA: Recv ZSGSRD 36503
17-03-17 23:57:35.268 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:35.268 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:35.268 -07 000000512 INF: FPGA: Recv ZSGSRD 36510
17-03-17 23:57:35.278 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:35.278 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:35.278 -07 000000475 INF: FPGA: Recv ZSGSRD 36513
17-03-17 23:57:35.288 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:35.288 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:35.288 -07 000000512 INF: FPGA: Recv ZSGSRD 36504
17-03-17 23:57:35.298 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:35.298 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:35.298 -07 000000623 INF: FPGA: Recv ZSGSRD 36508
17-03-17 23:57:35.308 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:35.308 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:35.308 -07 000000409 INF: FPGA: Recv ZSGSRD 36507
17-03-17 23:57:35.318 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:35.318 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:35.318 -07 000000576 INF: FPGA: Recv ZSGSRD 36502
17-03-17 23:57:35.328 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:35.328 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:35.328 -07 000000478 INF: FPGA: Recv ZPIEZORD 32515
17-03-17 23:57:35.338 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:35.338 -07 000000382 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.8 V.
17-03-17 23:57:35.338 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36506 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36506 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36500 (-173.9 uncal um), Max = 36513 (-174.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:57:35.338 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36506, posNoise = 7, negNoise = 6
17-03-17 23:57:35.338 -07 000000382 INF: Z Motor: After move to -0.174836, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:35.338 -07 000000382 INF: Z Motor: Settle wait time = 1420 ms, measure time = 111 ms (allowed 150 ms), total time = 1531 ms
17-03-17 23:57:35.338 -07 000000382 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:57:35.378 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1913 ms
17-03-17 23:57:35.378 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:57:35.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:35.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:35.378 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:35.378 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:35.378 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:57:35.378 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:35.378 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:57:35.378 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:57:35.388 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:57:35.388 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:57:35.398 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:57:35.398 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:57:35.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:57:35.448 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:57:35.748 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:57:35.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:57:35.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:57:35.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 23:57:35.788 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:57:35.788 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 23:57:35.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-17 23:57:35.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 23:57:35.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:35.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:57:35.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:57:35.888 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:35.888 -07 000000382 INF: Autofocus start
17-03-17 23:57:35.888 -07 000000382 INF: MeasureProfile start
17-03-17 23:57:35.888 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:35.898 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:57:35.898 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:57:35.898 -07 000000382 INF: MeasureProfile done
17-03-17 23:57:35.898 -07 000000382 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:57:35.898 -07 000000382 INF: Autofocus finished
17-03-17 23:57:36.098 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:57:36.098 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:57:36.098 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.17484564045826. ----------
17-03-17 23:57:36.098 -07 000000610 INF: Cycle	80	Tile	11	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:57:36.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36708, sync = True, waitForSettling = True)
17-03-17 23:57:36.108 -07 000000610 INF: Z Motor: Moving to -0.168038 mm, started at -0.174846 mm, distance = 6.81 um
17-03-17 23:57:36.108 -07 000000610 INF: FPGA: Xmit ZDACW 36708\n [Z Motor]
17-03-17 23:57:36.108 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:57:36.118 -07 000000610 INF: FPGA: 'ZDACW 36708' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:57:36.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:36.118 -07 000000442 INF: FPGA: Recv ZDACR 36708
17-03-17 23:57:36.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:36.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:57:36.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:36.278 -07 000000382 INF: FPGA: Recv ZSGSRD 35442
17-03-17 23:57:36.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:36.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:36.288 -07 000000475 INF: FPGA: Recv ZSGSRD 35451
17-03-17 23:57:36.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:36.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:36.298 -07 000000512 INF: FPGA: Recv ZSGSRD 35451
17-03-17 23:57:36.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:36.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:36.308 -07 000000480 INF: FPGA: Recv ZSGSRD 35452
17-03-17 23:57:36.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:36.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:36.318 -07 000000478 INF: FPGA: Recv ZSGSRD 35448
17-03-17 23:57:36.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:36.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:36.328 -07 000000576 INF: FPGA: Recv ZSGSRD 35448
17-03-17 23:57:36.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:36.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:36.338 -07 000000623 INF: FPGA: Recv ZSGSRD 35449
17-03-17 23:57:36.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:36.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:36.348 -07 000000480 INF: FPGA: Recv ZSGSRD 35447
17-03-17 23:57:36.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:36.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:36.358 -07 000000576 INF: FPGA: Recv ZSGSRD 35446
17-03-17 23:57:36.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:36.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:36.368 -07 000000442 INF: FPGA: Recv ZSGSRD 35450
17-03-17 23:57:36.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:36.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:36.378 -07 000000480 INF: FPGA: Recv ZPIEZORD 31098
17-03-17 23:57:36.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:36.388 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.6 V.
17-03-17 23:57:36.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35448 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35448 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35442 (-167.1 uncal um), Max = 35452 (-167.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:57:36.388 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35448, posNoise = 4, negNoise = 6
17-03-17 23:57:36.388 -07 000000610 INF: Z Motor: After move to -0.168038, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:36.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:57:36.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:36.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:36.388 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:36.388 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:36.388 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:57:36.388 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:57:36.388 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:57:36.388 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:36.388 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:57:36.388 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:57:36.388 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:57:36.388 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:57:36.398 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:57:36.398 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:57:36.398 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:57:36.398 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:57:36.408 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:57:36.408 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:57:36.408 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:57:36.408 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:57:36.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36885 150\n [Camera]
17-03-17 23:57:36.618 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:57:37.118 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:57:37.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:57:37.648 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:57:37.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:57:37.648 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:37.648 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:37.648 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:57:37.658 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:57:37.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:57:37.658 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:37.658 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:37.658 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:57:37.848 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36885 1424
17-03-17 23:57:37.998 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:57:38.048 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:57:38.048 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:57:38.048 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:38.058 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:38.058 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:57:38.158 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 506 ms.
17-03-17 23:57:38.158 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-17 23:57:38.158 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:38.168 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:38.178 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 23:57:38.498 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:57:38.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:57:38.498 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:38.498 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:57:38.498 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:38.498 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:57:38.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:57:38.498 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:38.498 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:38.498 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:57:38.688 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:57:38.688 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:57:38.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36885 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:57:38.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:57:38.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168048824012277. ------
17-03-17 23:57:38.688 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:38.688 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17464 mm
17-03-17 23:57:38.688 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:57:38.698 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:57:38.698 -07 000000593 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 23:57:38.698 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:38.908 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 23:57:38.908 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:57:38.908 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:38.908 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 23:57:38.908 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:57:38.908 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:38.908 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:57:38.908 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 23:57:38.908 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:57:38.918 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 23:57:38.918 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38150, sync = True, waitForSettling = False)
17-03-17 23:57:38.918 -07 000000480 INF: Z Motor: Moving to -0.174640 mm, started at -0.168049 mm, distance = -6.59 um
17-03-17 23:57:38.918 -07 000000480 INF: FPGA: Xmit ZDACW 38150\n [Z Motor]
17-03-17 23:57:38.928 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:38.928 -07 000000478 INF: FPGA: Recv YRDPOS 139683
17-03-17 23:57:38.928 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:57:38.928 -07 000000480 INF: FPGA: 'ZDACW 38150' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 23:57:38.928 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:38.928 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 232 ms to get response, and 234 ms overall
17-03-17 23:57:38.928 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 222 ms to get response, and 232 ms overall
17-03-17 23:57:38.928 -07 000000593 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:38.928 -07 000000593 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:57:38.928 -07 000000593 INF: Y Motor: Moving 1341 steps-16
17-03-17 23:57:38.928 -07 000000478 INF: FPGA: Recv ZDACR 38150
17-03-17 23:57:38.938 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:57:38.938 -07 000000480 INF: Z Motor: MoveAbsStepped took 12 ms (did NOT wait for settling yet))
17-03-17 23:57:38.938 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:57:38.948 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:57:39.148 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:57:39.148 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 23:57:39.308 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 23:57:39.308 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 23:57:39.358 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:39.358 -07 000000480 INF: FPGA: Recv YRDPOS 141366
17-03-17 23:57:39.368 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:57:39.368 -07 000000593 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:39.368 -07 000000593 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 23:57:39.368 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.177 mm/sec
17-03-17 23:57:39.718 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.019446,
17-03-17 23:57:40.318 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:40.318 -07 000000429 INF: FPGA: Recv YRDPOS 141366
17-03-17 23:57:40.328 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:40.328 -07 000000593 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:40.348 -07 000000593 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:57:40.348 -07 000000593 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:57:40.348 -07 000000593 INF: Y Motor: Moved to 69.0264 after 1658 ms (table move)
17-03-17 23:57:40.358 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174640 mm (DAC = 38150)
17-03-17 23:57:40.358 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:40.358 -07 000000627 INF: FPGA: Recv ZSGSRD 36471
17-03-17 23:57:40.368 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:57:40.368 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:40.368 -07 000000429 INF: FPGA: Recv ZSGSRD 36474
17-03-17 23:57:40.378 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:40.378 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:40.378 -07 000000433 INF: FPGA: Recv ZSGSRD 36476
17-03-17 23:57:40.388 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:40.388 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:40.388 -07 000000478 INF: FPGA: Recv ZSGSRD 36470
17-03-17 23:57:40.398 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:40.398 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:40.398 -07 000000593 INF: FPGA: Recv ZSGSRD 36474
17-03-17 23:57:40.408 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:40.408 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:40.408 -07 000000409 INF: FPGA: Recv ZSGSRD 36476
17-03-17 23:57:40.418 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:40.418 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:40.418 -07 000000593 INF: FPGA: Recv ZSGSRD 36476
17-03-17 23:57:40.428 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:40.428 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:40.428 -07 000000409 INF: FPGA: Recv ZSGSRD 36470
17-03-17 23:57:40.438 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:40.438 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:40.438 -07 000000627 INF: FPGA: Recv ZSGSRD 36472
17-03-17 23:57:40.448 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:40.448 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:40.448 -07 000000433 INF: FPGA: Recv ZSGSRD 36481
17-03-17 23:57:40.458 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:40.458 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:40.458 -07 000000409 INF: FPGA: Recv ZPIEZORD 32506
17-03-17 23:57:40.468 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:40.468 -07 000000512 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.821 V. Piezo Error = -8.8 V.
17-03-17 23:57:40.468 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36474 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36474 (-173.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36470 (-173.7 uncal um), Max = 36481 (-173.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:57:40.468 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36474, posNoise = 7, negNoise = 4
17-03-17 23:57:40.468 -07 000000512 INF: Z Motor: After move to -0.174640, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:40.468 -07 000000512 INF: Z Motor: Settle wait time = 1434 ms, measure time = 109 ms (allowed 150 ms), total time = 1543 ms
17-03-17 23:57:40.468 -07 000000512 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:57:40.518 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1822 ms
17-03-17 23:57:40.518 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:57:40.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:40.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:40.518 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:40.518 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:57:40.518 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:40.518 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:40.518 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:57:40.518 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:57:40.528 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:57:40.528 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:57:40.528 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:57:40.528 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:57:40.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:57:40.578 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:57:40.878 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:57:40.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:57:40.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:57:40.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 23:57:40.918 -07 000000409 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:57:40.918 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 23:57:40.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-17 23:57:41.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:57:41.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:41.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:57:41.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:57:41.118 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:41.118 -07 000000478 INF: Autofocus start
17-03-17 23:57:41.118 -07 000000478 INF: MeasureProfile start
17-03-17 23:57:41.118 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:41.128 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:57:41.128 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:57:41.128 -07 000000478 INF: MeasureProfile done
17-03-17 23:57:41.128 -07 000000478 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:57:41.128 -07 000000478 INF: Autofocus finished
17-03-17 23:57:41.328 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:57:41.328 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:57:41.328 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174640065669724. ----------
17-03-17 23:57:41.328 -07 000000610 INF: Cycle	80	Tile	12	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:57:41.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36647, sync = True, waitForSettling = True)
17-03-17 23:57:41.338 -07 000000610 INF: Z Motor: Moving to -0.167759 mm, started at -0.174640 mm, distance = 6.88 um
17-03-17 23:57:41.338 -07 000000610 INF: FPGA: Xmit ZDACW 36647\n [Z Motor]
17-03-17 23:57:41.338 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 23:57:41.348 -07 000000610 INF: FPGA: 'ZDACW 36647' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:41.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:41.348 -07 000000627 INF: FPGA: Recv ZDACR 36647
17-03-17 23:57:41.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:41.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:57:41.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:41.508 -07 000000480 INF: FPGA: Recv ZSGSRD 35402
17-03-17 23:57:41.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:41.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:41.518 -07 000000593 INF: FPGA: Recv ZSGSRD 35402
17-03-17 23:57:41.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:41.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:41.528 -07 000000429 INF: FPGA: Recv ZSGSRD 35410
17-03-17 23:57:41.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:41.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:41.538 -07 000000512 INF: FPGA: Recv ZSGSRD 35400
17-03-17 23:57:41.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:41.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:41.548 -07 000000429 INF: FPGA: Recv ZSGSRD 35402
17-03-17 23:57:41.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:41.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:41.558 -07 000000478 INF: FPGA: Recv ZSGSRD 35404
17-03-17 23:57:41.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:41.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:41.568 -07 000000480 INF: FPGA: Recv ZSGSRD 35402
17-03-17 23:57:41.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:41.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:41.578 -07 000000593 INF: FPGA: Recv ZSGSRD 35408
17-03-17 23:57:41.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:41.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:41.588 -07 000000409 INF: FPGA: Recv ZSGSRD 35404
17-03-17 23:57:41.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:41.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:41.598 -07 000000478 INF: FPGA: Recv ZSGSRD 35403
17-03-17 23:57:41.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:41.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:41.608 -07 000000478 INF: FPGA: Recv ZPIEZORD 31024
17-03-17 23:57:41.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:41.618 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -9.6 V.
17-03-17 23:57:41.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35404 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35402 (-166.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35400 (-166.9 uncal um), Max = 35410 (-166.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:57:41.618 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35404, posNoise = 6, negNoise = 4
17-03-17 23:57:41.618 -07 000000610 INF: Z Motor: After move to -0.167759, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:41.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:57:41.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:41.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:41.618 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:41.618 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:57:41.618 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:57:41.618 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:41.618 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:57:41.618 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:41.618 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:57:41.618 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:57:41.618 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:57:41.618 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:57:41.618 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:57:41.618 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:57:41.628 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:57:41.628 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:57:41.638 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:57:41.638 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:57:41.638 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:57:41.638 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:57:41.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36824 150\n [Camera]
17-03-17 23:57:41.838 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:57:42.118 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:57:42.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:57:42.878 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:57:42.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:57:42.878 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:42.878 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:42.878 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:57:42.878 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:57:42.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:57:42.878 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:42.878 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:42.878 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:57:43.068 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36824 1422
17-03-17 23:57:43.218 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:57:43.278 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:57:43.278 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:57:43.278 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:43.278 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:57:43.278 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:57:43.278 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:43.288 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:57:43.288 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:57:43.288 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:57:43.298 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:57:43.718 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:57:43.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:57:43.718 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:43.718 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:43.718 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:57:43.728 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:57:43.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:57:43.728 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:43.728 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:43.728 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:57:43.908 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:57:43.918 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:57:43.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36824 150' command took 4 ms to send, 2260 ms to get response, and 2272 ms overall
17-03-17 23:57:43.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:57:43.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.16776615867804. ------
17-03-17 23:57:43.918 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:43.918 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17417 mm
17-03-17 23:57:43.918 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:57:43.928 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:43.928 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:57:43.928 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:57:43.928 -07 000000482 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-17 23:57:43.928 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:57:43.928 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38048, sync = True, waitForSettling = False)
17-03-17 23:57:43.928 -07 000000433 INF: Z Motor: Moving to -0.174173 mm, started at -0.167766 mm, distance = -6.41 um
17-03-17 23:57:43.938 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:43.948 -07 000000433 INF: FPGA: Xmit ZDACW 38048\n [Z Motor]
17-03-17 23:57:44.128 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:57:44.128 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:57:44.128 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:44.128 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:57:44.128 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:57:44.128 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:44.138 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:44.138 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:57:44.138 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:57:44.138 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:57:44.148 -07 000000409 INF: FPGA: Recv YRDPOS 141367
17-03-17 23:57:44.148 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:57:44.148 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:57:44.148 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 212 ms to get response, and 219 ms overall
17-03-17 23:57:44.148 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 201 ms to get response, and 219 ms overall
17-03-17 23:57:44.148 -07 000000482 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:44.148 -07 000000433 INF: FPGA: 'ZDACW 38048' command took 0 ms to send, 191 ms to get response, and 219 ms overall
17-03-17 23:57:44.148 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:44.148 -07 000000409 INF: FPGA: Recv ZDACR 38048
17-03-17 23:57:44.148 -07 000000482 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:57:44.148 -07 000000482 INF: Y Motor: Moving 1353 steps-33
17-03-17 23:57:44.158 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:57:44.158 -07 000000433 INF: Z Motor: MoveAbsStepped took 227 ms (did NOT wait for settling yet))
17-03-17 23:57:44.158 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:57:44.528 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 23:57:44.528 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 23:57:44.578 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:44.578 -07 000000512 INF: FPGA: Recv YRDPOS 143078
17-03-17 23:57:44.588 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:44.588 -07 000000482 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:44.588 -07 000000482 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 23:57:44.588 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.846 mm, average velocity = 2.233 mm/sec
17-03-17 23:57:45.088 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.026244,
17-03-17 23:57:45.538 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:45.538 -07 000000433 INF: FPGA: Recv YRDPOS 143079
17-03-17 23:57:45.548 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:45.548 -07 000000482 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:45.568 -07 000000482 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:57:45.568 -07 000000482 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:57:45.568 -07 000000482 INF: Y Motor: Moved to 69.8628 after 1646 ms (table move)
17-03-17 23:57:45.578 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174173 mm (DAC = 38048)
17-03-17 23:57:45.578 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:45.578 -07 000000618 INF: FPGA: Recv ZSGSRD 36400
17-03-17 23:57:45.588 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:57:45.588 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:45.588 -07 000000512 INF: FPGA: Recv ZSGSRD 36406
17-03-17 23:57:45.598 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:45.598 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:45.598 -07 000000433 INF: FPGA: Recv ZSGSRD 36404
17-03-17 23:57:45.608 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:45.608 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:45.608 -07 000000409 INF: FPGA: Recv ZSGSRD 36402
17-03-17 23:57:45.618 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:45.618 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:45.618 -07 000000433 INF: FPGA: Recv ZSGSRD 36407
17-03-17 23:57:45.628 -07 000000627 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:45.628 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:45.628 -07 000000512 INF: FPGA: Recv ZSGSRD 36396
17-03-17 23:57:45.638 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:45.638 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:45.638 -07 000000409 INF: FPGA: Recv ZSGSRD 36397
17-03-17 23:57:45.648 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:45.648 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:45.648 -07 000000482 INF: FPGA: Recv ZSGSRD 36402
17-03-17 23:57:45.658 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:45.658 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:45.658 -07 000000409 INF: FPGA: Recv ZSGSRD 36403
17-03-17 23:57:45.668 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:45.668 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:45.668 -07 000000512 INF: FPGA: Recv ZSGSRD 36410
17-03-17 23:57:45.678 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:45.678 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:45.678 -07 000000618 INF: FPGA: Recv ZPIEZORD 32384
17-03-17 23:57:45.688 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:45.688 -07 000000627 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.806 V. Piezo Error = -8.9 V.
17-03-17 23:57:45.688 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36403 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36402 (-173.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36396 (-173.3 uncal um), Max = 36410 (-173.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:57:45.688 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36403, posNoise = 7, negNoise = 7
17-03-17 23:57:45.688 -07 000000627 INF: Z Motor: After move to -0.174173, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:45.688 -07 000000627 INF: Z Motor: Settle wait time = 1649 ms, measure time = 109 ms (allowed 150 ms), total time = 1758 ms
17-03-17 23:57:45.688 -07 000000627 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:57:45.738 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1811 ms
17-03-17 23:57:45.738 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:57:45.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:45.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:45.738 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:45.738 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:45.738 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:57:45.738 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:45.738 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:57:45.738 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:57:45.748 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:57:45.748 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:57:45.748 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:57:45.748 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:57:45.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:57:45.798 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:57:46.098 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:57:46.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:57:46.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:57:46.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) start.
17-03-17 23:57:46.138 -07 000000433 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:57:46.138 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 23:57:46.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-17 23:57:46.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:57:46.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:46.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:57:46.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:57:46.238 -07 000000462 INF: Autofocus start
17-03-17 23:57:46.238 -07 000000462 INF: MeasureProfile start
17-03-17 23:57:46.238 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:46.238 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:46.248 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:57:46.248 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:57:46.248 -07 000000462 INF: MeasureProfile done
17-03-17 23:57:46.248 -07 000000462 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:57:46.248 -07 000000462 INF: Autofocus finished
17-03-17 23:57:46.448 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:57:46.448 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:57:46.448 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174183946607659. ----------
17-03-17 23:57:46.448 -07 000000610 INF: Cycle	80	Tile	13	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:57:46.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36545, sync = True, waitForSettling = True)
17-03-17 23:57:46.458 -07 000000610 INF: Z Motor: Moving to -0.167292 mm, started at -0.174184 mm, distance = 6.89 um
17-03-17 23:57:46.458 -07 000000610 INF: FPGA: Xmit ZDACW 36545\n [Z Motor]
17-03-17 23:57:46.458 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 23:57:46.468 -07 000000610 INF: FPGA: 'ZDACW 36545' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:46.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:46.468 -07 000000462 INF: FPGA: Recv ZDACR 36545
17-03-17 23:57:46.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:46.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:57:46.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:46.628 -07 000000576 INF: FPGA: Recv ZSGSRD 35329
17-03-17 23:57:46.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:46.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:46.638 -07 000000576 INF: FPGA: Recv ZSGSRD 35334
17-03-17 23:57:46.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:46.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:46.648 -07 000000576 INF: FPGA: Recv ZSGSRD 35332
17-03-17 23:57:46.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:46.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:46.658 -07 000000576 INF: FPGA: Recv ZSGSRD 35325
17-03-17 23:57:46.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:46.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:46.668 -07 000000576 INF: FPGA: Recv ZSGSRD 35335
17-03-17 23:57:46.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:46.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:46.678 -07 000000576 INF: FPGA: Recv ZSGSRD 35331
17-03-17 23:57:46.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:46.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:46.688 -07 000000627 INF: FPGA: Recv ZSGSRD 35331
17-03-17 23:57:46.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:46.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:46.698 -07 000000486 INF: FPGA: Recv ZSGSRD 35335
17-03-17 23:57:46.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:46.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:46.708 -07 000000486 INF: FPGA: Recv ZSGSRD 35332
17-03-17 23:57:46.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:46.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:46.718 -07 000000627 INF: FPGA: Recv ZSGSRD 35333
17-03-17 23:57:46.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:46.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:46.728 -07 000000512 INF: FPGA: Recv ZPIEZORD 30928
17-03-17 23:57:46.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:46.738 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.576 V. Piezo Error = -9.7 V.
17-03-17 23:57:46.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35332 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35332 (-166.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35325 (-166.4 uncal um), Max = 35335 (-166.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:57:46.738 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35332, posNoise = 3, negNoise = 7
17-03-17 23:57:46.738 -07 000000610 INF: Z Motor: After move to -0.167292, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:46.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:57:46.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:46.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:46.738 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:46.738 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:46.738 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:57:46.738 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:46.738 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:57:46.738 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:57:46.738 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:57:46.738 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:57:46.738 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:57:46.738 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:57:46.748 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:57:46.748 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:57:46.748 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:57:46.748 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:57:46.758 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:57:46.758 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:57:46.758 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:57:46.758 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:57:46.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36721 150\n [Camera]
17-03-17 23:57:46.968 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:57:47.118 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:57:47.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:57:47.998 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:57:47.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:57:47.998 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:47.998 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:47.998 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:57:48.008 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:57:48.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:57:48.008 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:48.128 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:48.128 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:57:48.198 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36721 1422
17-03-17 23:57:48.338 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:57:48.398 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:57:48.398 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:57:48.398 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:48.398 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:57:48.398 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:57:48.508 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:57:48.508 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:57:48.508 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:48.508 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:48.518 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 23:57:48.848 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:57:48.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:57:48.848 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:48.848 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:57:48.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:57:48.848 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:48.848 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:48.848 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:48.848 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:57:48.848 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:57:49.038 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:57:49.038 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:57:49.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36721 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:57:49.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:57:49.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167303615403833. ------
17-03-17 23:57:49.038 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:49.038 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17370 mm
17-03-17 23:57:49.038 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:57:49.048 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:57:49.048 -07 000000623 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 23:57:49.048 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 37944, sync = True, waitForSettling = False)
17-03-17 23:57:49.048 -07 000000482 INF: Z Motor: Moving to -0.173696 mm, started at -0.167304 mm, distance = -6.39 um
17-03-17 23:57:49.048 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:49.048 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 23:57:49.048 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:49.048 -07 000000459 INF: FPGA: Recv YRDPOS 143079
17-03-17 23:57:49.058 -07 000000623 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:57:49.058 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:57:49.058 -07 000000623 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:49.058 -07 000000623 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:57:49.058 -07 000000623 INF: Y Motor: Moving 1344 steps-21
17-03-17 23:57:49.068 -07 000000482 INF: FPGA: Xmit ZDACW 37944\n [Z Motor]
17-03-17 23:57:49.068 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 23:57:49.078 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:57:49.078 -07 000000482 INF: FPGA: 'ZDACW 37944' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:57:49.088 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:49.088 -07 000000627 INF: FPGA: Recv ZDACR 37944
17-03-17 23:57:49.098 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:57:49.098 -07 000000482 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 23:57:49.248 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:57:49.258 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:57:49.258 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:49.258 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 23:57:49.258 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:57:49.258 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:49.258 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:57:49.258 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 23:57:49.258 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:49.258 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:57:49.258 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 23:57:49.268 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:57:49.448 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 23:57:49.448 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:57:49.488 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:49.498 -07 000000627 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:57:49.498 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:57:49.498 -07 000000623 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:49.498 -07 000000623 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:57:49.498 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-17 23:57:50.458 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.008536,
17-03-17 23:57:50.468 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:50.468 -07 000000627 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:57:50.478 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:57:50.478 -07 000000623 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:50.498 -07 000000623 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:57:50.498 -07 000000623 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:57:50.498 -07 000000623 INF: Y Motor: Moved to 70.6880 after 1455 ms (table move)
17-03-17 23:57:50.508 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173696 mm (DAC = 37944)
17-03-17 23:57:50.518 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:50.518 -07 000000459 INF: FPGA: Recv ZSGSRD 36332
17-03-17 23:57:50.528 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:57:50.528 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:50.528 -07 000000475 INF: FPGA: Recv ZSGSRD 36328
17-03-17 23:57:50.538 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:50.538 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:50.538 -07 000000623 INF: FPGA: Recv ZSGSRD 36329
17-03-17 23:57:50.548 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:50.548 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:50.548 -07 000000627 INF: FPGA: Recv ZSGSRD 36328
17-03-17 23:57:50.558 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:50.558 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:50.558 -07 000000475 INF: FPGA: Recv ZSGSRD 36321
17-03-17 23:57:50.568 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:50.568 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:50.568 -07 000000459 INF: FPGA: Recv ZSGSRD 36329
17-03-17 23:57:50.578 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:50.578 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:50.578 -07 000000475 INF: FPGA: Recv ZSGSRD 36324
17-03-17 23:57:50.588 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:50.588 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:50.588 -07 000000433 INF: FPGA: Recv ZSGSRD 36329
17-03-17 23:57:50.598 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:50.598 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:50.598 -07 000000623 INF: FPGA: Recv ZSGSRD 36334
17-03-17 23:57:50.608 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:50.608 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:50.608 -07 000000627 INF: FPGA: Recv ZSGSRD 36329
17-03-17 23:57:50.618 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:50.618 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:50.618 -07 000000459 INF: FPGA: Recv ZPIEZORD 32317
17-03-17 23:57:50.628 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:50.628 -07 000000486 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.790 V. Piezo Error = -8.9 V.
17-03-17 23:57:50.628 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36328 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36329 (-172.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36321 (-172.8 uncal um), Max = 36334 (-172.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:57:50.628 -07 000000486 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36328, posNoise = 6, negNoise = 7
17-03-17 23:57:50.628 -07 000000486 INF: Z Motor: After move to -0.173696, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:50.628 -07 000000486 INF: Z Motor: Settle wait time = 1460 ms, measure time = 117 ms (allowed 150 ms), total time = 1577 ms
17-03-17 23:57:50.628 -07 000000486 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 23:57:50.668 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-17 23:57:50.668 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:57:50.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:50.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:50.668 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:50.668 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:50.668 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:57:50.668 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:50.668 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:57:50.668 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:57:50.678 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:57:50.678 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:57:50.678 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:57:50.678 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:57:50.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:57:50.728 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:57:51.028 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:57:51.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:57:51.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:57:51.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 23:57:51.068 -07 000000627 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:57:51.068 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 23:57:51.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 3 ms to send, 375 ms to get response, and 385 ms overall
17-03-17 23:57:51.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:57:51.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:51.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:57:51.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:57:51.168 -07 000000433 INF: Autofocus start
17-03-17 23:57:51.168 -07 000000433 INF: MeasureProfile start
17-03-17 23:57:51.278 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:51.288 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:51.288 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 114 ms to send, 0 ms to get response, and 117 ms overall
17-03-17 23:57:51.288 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:57:51.288 -07 000000433 INF: MeasureProfile done
17-03-17 23:57:51.298 -07 000000433 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 23:57:51.298 -07 000000433 INF: Autofocus finished
17-03-17 23:57:51.488 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:57:51.488 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 23:57:51.488 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173702130697027. ----------
17-03-17 23:57:51.488 -07 000000610 INF: Cycle	80	Tile	14	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:57:51.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36387, sync = True, waitForSettling = True)
17-03-17 23:57:51.498 -07 000000610 INF: Z Motor: Moving to -0.166569 mm, started at -0.173702 mm, distance = 7.13 um
17-03-17 23:57:51.498 -07 000000610 INF: FPGA: Xmit ZDACW 36387\n [Z Motor]
17-03-17 23:57:51.498 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:57:51.508 -07 000000610 INF: FPGA: 'ZDACW 36387' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:57:51.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:51.508 -07 000000478 INF: FPGA: Recv ZDACR 36387
17-03-17 23:57:51.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:51.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:57:51.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:51.668 -07 000000627 INF: FPGA: Recv ZSGSRD 35214
17-03-17 23:57:51.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:51.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:51.678 -07 000000433 INF: FPGA: Recv ZSGSRD 35224
17-03-17 23:57:51.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:51.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:51.688 -07 000000623 INF: FPGA: Recv ZSGSRD 35220
17-03-17 23:57:51.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:51.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:51.698 -07 000000382 INF: FPGA: Recv ZSGSRD 35217
17-03-17 23:57:51.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:51.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:51.708 -07 000000459 INF: FPGA: Recv ZSGSRD 35223
17-03-17 23:57:51.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:51.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:51.718 -07 000000442 INF: FPGA: Recv ZSGSRD 35223
17-03-17 23:57:51.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:51.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:51.728 -07 000000623 INF: FPGA: Recv ZSGSRD 35223
17-03-17 23:57:51.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:51.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:51.738 -07 000000433 INF: FPGA: Recv ZSGSRD 35217
17-03-17 23:57:51.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:51.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:51.748 -07 000000459 INF: FPGA: Recv ZSGSRD 35220
17-03-17 23:57:51.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:51.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:51.758 -07 000000486 INF: FPGA: Recv ZSGSRD 35218
17-03-17 23:57:51.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:51.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:51.768 -07 000000486 INF: FPGA: Recv ZPIEZORD 30821
17-03-17 23:57:51.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:51.778 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.7 V.
17-03-17 23:57:51.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35220 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35220 (-165.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35214 (-165.7 uncal um), Max = 35224 (-165.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:57:51.778 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35220, posNoise = 4, negNoise = 6
17-03-17 23:57:51.778 -07 000000610 INF: Z Motor: After move to -0.166569, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:51.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:57:51.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:51.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:51.778 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:51.778 -07 000000442 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:57:51.778 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:51.778 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:51.778 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:57:51.778 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:57:51.778 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:57:51.778 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:57:51.778 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:57:51.778 -07 000000442 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:57:51.788 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:57:51.788 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:57:51.788 -07 000000442 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:57:51.788 -07 000000442 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:57:51.798 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:57:51.798 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:57:51.798 -07 000000442 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:57:51.798 -07 000000442 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:57:51.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36563 150\n [Camera]
17-03-17 23:57:51.998 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:57:52.118 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:57:52.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:57:53.038 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:57:53.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:57:53.038 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:53.038 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:53.038 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:57:53.048 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:57:53.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:57:53.048 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:53.048 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:53.048 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:57:53.238 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36563 1422
17-03-17 23:57:53.378 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:57:53.438 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:57:53.438 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:57:53.438 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:53.448 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:57:53.448 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:57:53.448 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:53.448 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:53.448 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:57:53.448 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:53.458 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:57:53.888 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:57:53.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:57:53.888 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:53.888 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:57:53.888 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:53.888 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:57:53.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:57:53.888 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:53.888 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:53.888 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:57:54.078 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:57:54.078 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:57:54.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36563 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:57:54.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:57:54.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.166584103643956. ------
17-03-17 23:57:54.078 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:54.078 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17324 mm
17-03-17 23:57:54.078 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:57:54.078 -07 000000442 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:57:54.078 -07 000000442 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 23:57:54.078 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37844, sync = True, waitForSettling = False)
17-03-17 23:57:54.078 -07 000000627 INF: Z Motor: Moving to -0.173239 mm, started at -0.166584 mm, distance = -6.65 um
17-03-17 23:57:54.088 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:54.088 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:57:54.088 -07 000000627 INF: FPGA: Xmit ZDACW 37844\n [Z Motor]
17-03-17 23:57:54.088 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:57:54.098 -07 000000627 INF: FPGA: 'ZDACW 37844' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:54.098 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:57:54.108 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:54.108 -07 000000459 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:57:54.118 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:54.118 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:57:54.118 -07 000000442 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:54.118 -07 000000442 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:57:54.118 -07 000000442 INF: Y Motor: Moving 1351 steps-30
17-03-17 23:57:54.118 -07 000000512 INF: FPGA: Recv ZDACR 37844
17-03-17 23:57:54.128 -07 000000442 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:57:54.128 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:57:54.128 -07 000000627 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:57:54.288 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 23:57:54.288 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:57:54.288 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:54.288 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:57:54.288 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:57:54.288 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:54.298 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:57:54.298 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:57:54.298 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:57:54.298 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:57:54.298 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:57:54.308 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 23:57:54.498 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 23:57:54.498 -07 000000442 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:57:54.538 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:54.548 -07 000000512 INF: FPGA: Recv YRDPOS 146469
17-03-17 23:57:54.558 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:54.558 -07 000000442 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:54.558 -07 000000442 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:57:54.558 -07 000000442 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.182 mm/sec
17-03-17 23:57:55.508 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:55.508 -07 000000382 INF: FPGA: Recv YRDPOS 146470
17-03-17 23:57:55.518 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:55.518 -07 000000442 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:55.548 -07 000000442 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:57:55.548 -07 000000442 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:57:55.548 -07 000000442 INF: Y Motor: Moved to 71.5186 after 1462 ms (table move)
17-03-17 23:57:55.548 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173239 mm (DAC = 37844)
17-03-17 23:57:55.548 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:55.548 -07 000000475 INF: FPGA: Recv ZSGSRD 36256
17-03-17 23:57:55.558 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:57:55.558 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:55.558 -07 000000475 INF: FPGA: Recv ZSGSRD 36260
17-03-17 23:57:55.568 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:55.568 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:55.568 -07 000000475 INF: FPGA: Recv ZSGSRD 36258
17-03-17 23:57:55.578 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:55.578 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:55.578 -07 000000475 INF: FPGA: Recv ZSGSRD 36261
17-03-17 23:57:55.588 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:55.588 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:55.588 -07 000000512 INF: FPGA: Recv ZSGSRD 36255
17-03-17 23:57:55.598 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:55.598 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:55.598 -07 000000486 INF: FPGA: Recv ZSGSRD 36261
17-03-17 23:57:55.608 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:55.608 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:55.608 -07 000000512 INF: FPGA: Recv ZSGSRD 36258
17-03-17 23:57:55.618 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:55.618 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:55.618 -07 000000486 INF: FPGA: Recv ZSGSRD 36246
17-03-17 23:57:55.628 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:55.628 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:55.628 -07 000000475 INF: FPGA: Recv ZSGSRD 36256
17-03-17 23:57:55.638 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:55.638 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:55.638 -07 000000442 INF: FPGA: Recv ZSGSRD 36269
17-03-17 23:57:55.648 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:55.648 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:55.648 -07 000000486 INF: FPGA: Recv ZPIEZORD 32219
17-03-17 23:57:55.658 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:55.658 -07 000000480 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.775 V. Piezo Error = -8.9 V.
17-03-17 23:57:55.658 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36258 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36258 (-172.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 36246 (-172.3 uncal um), Max = 36269 (-172.4 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 23:57:55.658 -07 000000480 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36258, posNoise = 11, negNoise = 12
17-03-17 23:57:55.658 -07 000000480 INF: Z Motor: After move to -0.173239, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:55.658 -07 000000480 INF: Z Motor: Settle wait time = 1466 ms, measure time = 104 ms (allowed 150 ms), total time = 1570 ms
17-03-17 23:57:55.658 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 23:57:55.708 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-17 23:57:55.708 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:57:55.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:55.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:55.718 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:55.718 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:55.718 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:57:55.718 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:55.718 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:57:55.718 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:57:55.718 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:57:55.718 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:57:55.728 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:57:55.728 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:57:55.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:57:55.778 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:57:55.838 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.007176,
17-03-17 23:57:56.078 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:57:56.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:57:56.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:57:56.188 -07 000000475 INF: FPGA: Recv @CAMSNAP 383
17-03-17 23:57:56.188 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 23:57:56.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 453 ms to get response, and 457 ms overall
17-03-17 23:57:56.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 23:57:56.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 129 ms.
17-03-17 23:57:56.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:56.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:57:56.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 242 ms.
17-03-17 23:57:56.388 -07 000000512 INF: Autofocus start
17-03-17 23:57:56.388 -07 000000512 INF: MeasureProfile start
17-03-17 23:57:56.388 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:56.388 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:56.398 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:57:56.398 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:57:56.398 -07 000000512 INF: MeasureProfile done
17-03-17 23:57:56.398 -07 000000512 INF: X=-32  Z correction [um]=-0.2344
17-03-17 23:57:56.398 -07 000000512 INF: Autofocus finished
17-03-17 23:57:56.598 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:57:56.598 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 23:57:56.598 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173252435847104. ----------
17-03-17 23:57:56.598 -07 000000610 INF: Cycle	80	Tile	15	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:57:56.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36305, sync = True, waitForSettling = True)
17-03-17 23:57:56.608 -07 000000610 INF: Z Motor: Moving to -0.166194 mm, started at -0.173252 mm, distance = 7.06 um
17-03-17 23:57:56.608 -07 000000610 INF: FPGA: Xmit ZDACW 36305\n [Z Motor]
17-03-17 23:57:56.608 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:57:56.618 -07 000000610 INF: FPGA: 'ZDACW 36305' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:56.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:56.618 -07 000000576 INF: FPGA: Recv ZDACR 36305
17-03-17 23:57:56.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:56.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:57:56.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:56.778 -07 000000486 INF: FPGA: Recv ZSGSRD 35159
17-03-17 23:57:56.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:57:56.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:56.788 -07 000000480 INF: FPGA: Recv ZSGSRD 35164
17-03-17 23:57:56.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:56.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:56.798 -07 000000486 INF: FPGA: Recv ZSGSRD 35159
17-03-17 23:57:56.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:56.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:56.808 -07 000000512 INF: FPGA: Recv ZSGSRD 35161
17-03-17 23:57:56.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:56.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:56.818 -07 000000486 INF: FPGA: Recv ZSGSRD 35158
17-03-17 23:57:56.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:56.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:56.828 -07 000000512 INF: FPGA: Recv ZSGSRD 35159
17-03-17 23:57:56.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:56.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:56.838 -07 000000480 INF: FPGA: Recv ZSGSRD 35163
17-03-17 23:57:56.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:56.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:56.848 -07 000000512 INF: FPGA: Recv ZSGSRD 35168
17-03-17 23:57:56.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:56.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:56.858 -07 000000475 INF: FPGA: Recv ZSGSRD 35164
17-03-17 23:57:56.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:56.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:57:56.868 -07 000000512 INF: FPGA: Recv ZSGSRD 35155
17-03-17 23:57:56.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:56.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:57:56.878 -07 000000486 INF: FPGA: Recv ZPIEZORD 30775
17-03-17 23:57:56.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:56.888 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.540 V. Piezo Error = -9.7 V.
17-03-17 23:57:56.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35161 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35160 (-165.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35155 (-165.3 uncal um), Max = 35168 (-165.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:57:56.888 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35161, posNoise = 7, negNoise = 6
17-03-17 23:57:56.888 -07 000000610 INF: Z Motor: After move to -0.166194, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:57:56.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 23:57:56.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:57:56.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:57:56.888 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:57:56.888 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:57:56.888 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:57:56.888 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:57:56.888 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:57:56.888 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:57:56.888 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:57:56.888 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:57:56.888 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:57:56.888 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:57:56.898 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:57:56.898 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:57:56.898 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:57:56.898 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:57:56.908 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 23:57:56.908 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:57:56.908 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:57:56.908 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:57:56.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36482 150\n [Camera]
17-03-17 23:57:57.108 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:57:57.118 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:57:57.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:57:58.148 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1231
17-03-17 23:57:58.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1231
17-03-17 23:57:58.148 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:58.148 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:58.148 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:57:58.158 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1231
17-03-17 23:57:58.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1231
17-03-17 23:57:58.158 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:58.158 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:58.158 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:57:58.338 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36482 1422
17-03-17 23:57:58.488 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:57:58.548 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:57:58.548 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:57:58.548 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:58.558 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:58.558 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:57:58.558 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:57:58.558 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:57:58.558 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:58.558 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:58.568 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:57:58.988 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:57:58.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:57:58.998 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:57:58.998 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:57:58.998 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:57:58.998 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:57:58.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:57:58.998 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:57:58.998 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:57:58.998 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:57:59.188 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:57:59.188 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:57:59.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36482 150' command took 4 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:57:59.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:57:59.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.166205075127592. ------
17-03-17 23:57:59.188 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:57:59.188 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17253 mm
17-03-17 23:57:59.188 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:57:59.198 -07 000000442 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:57:59.198 -07 000000442 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 23:57:59.198 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 37689, sync = True, waitForSettling = False)
17-03-17 23:57:59.198 -07 000000429 INF: Z Motor: Moving to -0.172529 mm, started at -0.166205 mm, distance = -6.32 um
17-03-17 23:57:59.198 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:59.198 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:57:59.198 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:57:59.198 -07 000000462 INF: FPGA: Recv YRDPOS 146470
17-03-17 23:57:59.208 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:59.208 -07 000000442 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:59.208 -07 000000442 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:57:59.208 -07 000000442 INF: Y Motor: Moving 1350 steps-30
17-03-17 23:57:59.208 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:57:59.218 -07 000000429 INF: FPGA: Xmit ZDACW 37689\n [Z Motor]
17-03-17 23:57:59.218 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:57:59.228 -07 000000442 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:57:59.228 -07 000000429 INF: FPGA: 'ZDACW 37689' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:57:59.238 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:57:59.238 -07 000000486 INF: FPGA: Recv ZDACR 37689
17-03-17 23:57:59.248 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:57:59.248 -07 000000429 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:57:59.398 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:57:59.398 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:57:59.398 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:59.398 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 23:57:59.398 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:57:59.398 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:57:59.398 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:57:59.408 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:57:59.408 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 23:57:59.408 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:57:59.408 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:57:59.408 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 23:57:59.598 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 23:57:59.598 -07 000000442 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:57:59.648 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:57:59.648 -07 000000627 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:57:59.658 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:57:59.658 -07 000000442 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:57:59.658 -07 000000442 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:57:59.658 -07 000000442 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 23:58:00.608 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:00.608 -07 000000480 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:58:00.618 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:00.618 -07 000000442 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:00.638 -07 000000442 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:58:00.638 -07 000000442 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:58:00.648 -07 000000442 INF: Y Motor: Moved to 72.3491 after 1449 ms (table move)
17-03-17 23:58:00.648 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172529 mm (DAC = 37689)
17-03-17 23:58:00.648 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:00.648 -07 000000486 INF: FPGA: Recv ZSGSRD 36155
17-03-17 23:58:00.658 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:58:00.658 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:00.658 -07 000000486 INF: FPGA: Recv ZSGSRD 36148
17-03-17 23:58:00.668 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:00.668 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:00.668 -07 000000486 INF: FPGA: Recv ZSGSRD 36146
17-03-17 23:58:00.678 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:00.678 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:00.678 -07 000000486 INF: FPGA: Recv ZSGSRD 36150
17-03-17 23:58:00.688 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:00.688 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:00.688 -07 000000442 INF: FPGA: Recv ZSGSRD 36148
17-03-17 23:58:00.698 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:00.698 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:00.698 -07 000000486 INF: FPGA: Recv ZSGSRD 36145
17-03-17 23:58:00.708 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:00.708 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:00.708 -07 000000442 INF: FPGA: Recv ZSGSRD 36144
17-03-17 23:58:00.718 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:00.718 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:00.718 -07 000000442 INF: FPGA: Recv ZSGSRD 36144
17-03-17 23:58:00.728 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:00.728 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:00.728 -07 000000486 INF: FPGA: Recv ZSGSRD 36149
17-03-17 23:58:00.738 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:00.738 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:00.738 -07 000000486 INF: FPGA: Recv ZSGSRD 36152
17-03-17 23:58:00.748 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:00.748 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:00.748 -07 000000442 INF: FPGA: Recv ZPIEZORD 32123
17-03-17 23:58:00.758 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:00.758 -07 000000475 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.751 V. Piezo Error = -8.9 V.
17-03-17 23:58:00.758 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36148 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36148 (-171.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36144 (-171.6 uncal um), Max = 36155 (-171.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:58:00.758 -07 000000475 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36148, posNoise = 7, negNoise = 4
17-03-17 23:58:00.758 -07 000000475 INF: Z Motor: After move to -0.172529, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:00.758 -07 000000475 INF: Z Motor: Settle wait time = 1452 ms, measure time = 107 ms (allowed 150 ms), total time = 1559 ms
17-03-17 23:58:00.758 -07 000000475 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 23:58:00.808 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-17 23:58:00.808 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:58:00.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:00.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:00.808 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:00.808 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:00.808 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:58:00.808 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:00.808 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:00.808 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:58:00.818 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:58:00.818 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:58:00.828 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-17 23:58:00.828 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-17 23:58:00.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:58:00.878 -07 000000442 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:58:01.178 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:58:01.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:58:01.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:58:01.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 23:58:01.198 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.000345,
17-03-17 23:58:01.218 -07 000000475 INF: FPGA: Recv @CAMSNAP 381
17-03-17 23:58:01.218 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 23:58:01.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 385 ms overall
17-03-17 23:58:01.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 23:58:01.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:01.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:58:01.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 23:58:01.318 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:01.318 -07 000000475 INF: Autofocus start
17-03-17 23:58:01.318 -07 000000475 INF: MeasureProfile start
17-03-17 23:58:01.318 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:01.328 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:58:01.328 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:58:01.328 -07 000000475 INF: MeasureProfile done
17-03-17 23:58:01.328 -07 000000475 INF: X=48  Z correction [um]=0.1739867
17-03-17 23:58:01.328 -07 000000475 INF: Autofocus finished
17-03-17 23:58:01.528 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:58:01.528 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:58:01.528 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.17254577251151. ----------
17-03-17 23:58:01.528 -07 000000610 INF: Cycle	80	Tile	16	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:58:01.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36240, sync = True, waitForSettling = True)
17-03-17 23:58:01.538 -07 000000610 INF: Z Motor: Moving to -0.165896 mm, started at -0.172546 mm, distance = 6.65 um
17-03-17 23:58:01.538 -07 000000610 INF: FPGA: Xmit ZDACW 36240\n [Z Motor]
17-03-17 23:58:01.538 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:58:01.548 -07 000000610 INF: FPGA: 'ZDACW 36240' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:58:01.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:01.558 -07 000000475 INF: FPGA: Recv ZDACR 36240
17-03-17 23:58:01.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:58:01.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:58:01.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:01.718 -07 000000382 INF: FPGA: Recv ZSGSRD 35115
17-03-17 23:58:01.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:01.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:01.728 -07 000000482 INF: FPGA: Recv ZSGSRD 35114
17-03-17 23:58:01.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:01.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:01.738 -07 000000382 INF: FPGA: Recv ZSGSRD 35114
17-03-17 23:58:01.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:01.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:01.748 -07 000000482 INF: FPGA: Recv ZSGSRD 35110
17-03-17 23:58:01.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:01.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:01.758 -07 000000482 INF: FPGA: Recv ZSGSRD 35119
17-03-17 23:58:01.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:01.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:01.768 -07 000000382 INF: FPGA: Recv ZSGSRD 35126
17-03-17 23:58:01.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:01.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:01.778 -07 000000382 INF: FPGA: Recv ZSGSRD 35121
17-03-17 23:58:01.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:01.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:01.788 -07 000000482 INF: FPGA: Recv ZSGSRD 35113
17-03-17 23:58:01.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:01.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:01.798 -07 000000482 INF: FPGA: Recv ZSGSRD 35115
17-03-17 23:58:01.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:01.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:01.808 -07 000000382 INF: FPGA: Recv ZSGSRD 35117
17-03-17 23:58:01.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:01.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:01.818 -07 000000482 INF: FPGA: Recv ZPIEZORD 30714
17-03-17 23:58:01.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:01.828 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.530 V. Piezo Error = -9.7 V.
17-03-17 23:58:01.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35116 (-165.1 uncal um), Error = 0.8 uncal um, Median = 35115 (-165.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35110 (-165.0 uncal um), Max = 35126 (-165.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:58:01.828 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35116, posNoise = 10, negNoise = 6
17-03-17 23:58:01.828 -07 000000610 INF: Z Motor: After move to -0.165896, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:01.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 23:58:01.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:01.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:01.828 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:01.828 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:58:01.828 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:01.828 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:58:01.828 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:58:01.828 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:01.828 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:58:01.828 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:58:01.828 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:58:01.828 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:58:01.838 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:58:01.838 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:58:01.838 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:58:01.838 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:58:01.848 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:58:01.848 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:58:01.848 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:58:01.848 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:58:01.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36417 150\n [Camera]
17-03-17 23:58:02.058 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:58:02.118 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:58:02.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:58:03.088 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:58:03.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:58:03.088 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:03.088 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:03.088 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:58:03.098 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:58:03.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:58:03.098 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:03.098 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:03.098 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:58:03.288 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36417 1422
17-03-17 23:58:03.438 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:58:03.488 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:58:03.488 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:58:03.488 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:03.498 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:58:03.498 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:58:03.498 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:03.498 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:03.498 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:58:03.498 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:03.618 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-17 23:58:03.938 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:58:03.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:58:03.938 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:03.938 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:58:03.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:58:03.938 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:03.938 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:58:04.338 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 23:58:04.338 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:58:04.338 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:04.348 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:04.348 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:58:04.358 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:04.358 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:04.358 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:58:04.768 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 408 ms.
17-03-17 23:58:04.768 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:58:04.768 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:04.768 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:58:04.778 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 23:58:04.788 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:58:04.788 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:58:04.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36417 150' command took 2 ms to send, 2920 ms to get response, and 2929 ms overall
17-03-17 23:58:04.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:58:04.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.165915985581213. ------
17-03-17 23:58:04.788 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:05.718 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17248 mm
17-03-17 23:58:05.718 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:58:06.718 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:06.718 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1920 ms to get response, and 1926 ms overall
17-03-17 23:58:06.718 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:58:06.718 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:58:06.718 -07 000000627 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 23:58:06.728 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:07.718 -07 000000462 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:58:07.718 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:58:07.718 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:58:07.718 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 23:58:07.718 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 980 ms to get response, and 998 ms overall
17-03-17 23:58:07.718 -07 000000627 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:07.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:58:07.718 -07 000000627 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:58:07.718 -07 000000627 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:58:07.718 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:58:07.718 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37679, sync = True, waitForSettling = False)
17-03-17 23:58:07.718 -07 000000462 INF: Z Motor: Moving to -0.172483 mm, started at -0.165916 mm, distance = -6.57 um
17-03-17 23:58:07.718 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.990831,
17-03-17 23:58:07.728 -07 000000462 INF: FPGA: Xmit ZDACW 37679\n [Z Motor]
17-03-17 23:58:08.718 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:58:08.718 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:58:08.718 -07 000000462 INF: FPGA: 'ZDACW 37679' command took 0 ms to send, 982 ms to get response, and 999 ms overall
17-03-17 23:58:08.718 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 992 ms to get response, and 1000 ms overall
17-03-17 23:58:08.718 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:08.718 -07 000000429 INF: FPGA: Recv ZDACR 37679
17-03-17 23:58:08.728 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:58:08.728 -07 000000462 INF: Z Motor: MoveAbsStepped took 1007 ms (did NOT wait for settling yet))
17-03-17 23:58:08.788 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:08.788 -07 000000429 INF: FPGA: Recv YRDPOS 149863
17-03-17 23:58:08.798 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 23:58:08.798 -07 000000627 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:08.798 -07 000000627 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 23:58:08.798 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1000 ms, distance = 0.843 mm, average velocity = 0.843 mm/sec
17-03-17 23:58:09.748 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:09.748 -07 000000512 INF: FPGA: Recv YRDPOS 149863
17-03-17 23:58:09.758 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:09.758 -07 000000627 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:09.778 -07 000000627 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:58:09.778 -07 000000627 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:58:09.778 -07 000000627 INF: Y Motor: Moved to 73.1753 after 3065 ms (table move)
17-03-17 23:58:09.788 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172483 mm (DAC = 37679)
17-03-17 23:58:09.788 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:09.788 -07 000000429 INF: FPGA: Recv ZSGSRD 36142
17-03-17 23:58:09.798 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:09.798 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:09.798 -07 000000462 INF: FPGA: Recv ZSGSRD 36142
17-03-17 23:58:09.808 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:09.808 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:09.808 -07 000000512 INF: FPGA: Recv ZSGSRD 36138
17-03-17 23:58:09.818 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:09.818 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:09.818 -07 000000478 INF: FPGA: Recv ZSGSRD 36138
17-03-17 23:58:09.828 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:09.828 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:09.828 -07 000000462 INF: FPGA: Recv ZSGSRD 36143
17-03-17 23:58:09.838 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:09.838 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:09.838 -07 000000478 INF: FPGA: Recv ZSGSRD 36138
17-03-17 23:58:09.848 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:09.848 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:09.848 -07 000000576 INF: FPGA: Recv ZSGSRD 36139
17-03-17 23:58:09.858 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:09.858 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:09.858 -07 000000480 INF: FPGA: Recv ZSGSRD 36142
17-03-17 23:58:09.868 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:09.868 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:09.868 -07 000000478 INF: FPGA: Recv ZSGSRD 36141
17-03-17 23:58:09.878 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:09.878 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:09.878 -07 000000462 INF: FPGA: Recv ZSGSRD 36142
17-03-17 23:58:09.888 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:09.888 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:09.888 -07 000000480 INF: FPGA: Recv ZPIEZORD 32131
17-03-17 23:58:09.898 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:09.898 -07 000000409 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.749 V. Piezo Error = -8.9 V.
17-03-17 23:58:09.898 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36140 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36142 (-171.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 36138 (-171.6 uncal um), Max = 36143 (-171.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 23:58:09.898 -07 000000409 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36140, posNoise = 3, negNoise = 2
17-03-17 23:58:09.898 -07 000000409 INF: Z Motor: After move to -0.172483, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:09.898 -07 000000409 INF: Z Motor: Settle wait time = 2068 ms, measure time = 111 ms (allowed 150 ms), total time = 2179 ms
17-03-17 23:58:09.898 -07 000000409 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:58:09.938 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4218 ms
17-03-17 23:58:09.938 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:58:09.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:09.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:09.938 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:09.938 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:58:09.938 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:09.938 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:09.938 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:09.938 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:58:09.948 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:58:09.948 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:58:09.958 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:58:09.958 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:58:09.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:58:10.008 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:58:10.308 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:58:10.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:58:10.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:58:10.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 23:58:10.338 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:58:10.348 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 23:58:10.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-17 23:58:10.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:58:10.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:10.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:58:10.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:58:10.448 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:10.448 -07 000000512 INF: Autofocus start
17-03-17 23:58:10.448 -07 000000512 INF: MeasureProfile start
17-03-17 23:58:10.458 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:10.458 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:58:10.458 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:58:10.458 -07 000000512 INF: MeasureProfile done
17-03-17 23:58:10.458 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:58:10.458 -07 000000512 INF: Autofocus finished
17-03-17 23:58:10.658 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:58:10.658 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:58:10.658 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.172494378814376. ----------
17-03-17 23:58:10.658 -07 000000610 INF: Cycle	80	Tile	17	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:58:10.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36194, sync = True, waitForSettling = True)
17-03-17 23:58:10.668 -07 000000610 INF: Z Motor: Moving to -0.165686 mm, started at -0.172494 mm, distance = 6.81 um
17-03-17 23:58:10.668 -07 000000610 INF: FPGA: Xmit ZDACW 36194\n [Z Motor]
17-03-17 23:58:10.668 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:58:10.678 -07 000000610 INF: FPGA: 'ZDACW 36194' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:10.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:10.678 -07 000000429 INF: FPGA: Recv ZDACR 36194
17-03-17 23:58:10.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:58:10.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:58:10.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:10.838 -07 000000478 INF: FPGA: Recv ZSGSRD 35084
17-03-17 23:58:10.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:10.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:10.848 -07 000000576 INF: FPGA: Recv ZSGSRD 35082
17-03-17 23:58:10.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:10.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:10.858 -07 000000462 INF: FPGA: Recv ZSGSRD 35082
17-03-17 23:58:10.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:58:10.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:10.868 -07 000000478 INF: FPGA: Recv ZSGSRD 35083
17-03-17 23:58:10.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:10.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:10.878 -07 000000462 INF: FPGA: Recv ZSGSRD 35081
17-03-17 23:58:10.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:10.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:10.888 -07 000000480 INF: FPGA: Recv ZSGSRD 35085
17-03-17 23:58:10.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:10.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:10.898 -07 000000576 INF: FPGA: Recv ZSGSRD 35077
17-03-17 23:58:10.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:10.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:10.908 -07 000000478 INF: FPGA: Recv ZSGSRD 35087
17-03-17 23:58:10.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:10.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:10.918 -07 000000576 INF: FPGA: Recv ZSGSRD 35081
17-03-17 23:58:10.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:10.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:10.928 -07 000000480 INF: FPGA: Recv ZSGSRD 35083
17-03-17 23:58:10.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:10.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:10.938 -07 000000627 INF: FPGA: Recv ZPIEZORD 30715
17-03-17 23:58:10.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:10.948 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.523 V. Piezo Error = -9.6 V.
17-03-17 23:58:10.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35082 (-164.8 uncal um), Error = 0.9 uncal um, Median = 35082 (-164.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35077 (-164.8 uncal um), Max = 35087 (-164.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:58:10.948 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35082, posNoise = 5, negNoise = 5
17-03-17 23:58:10.948 -07 000000610 INF: Z Motor: After move to -0.165686, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:10.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:58:10.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:10.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:10.948 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:10.948 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:58:10.948 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:10.948 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:58:10.948 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:58:10.948 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:10.948 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:10.948 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:58:10.948 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:58:10.948 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:58:10.958 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:58:10.958 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:58:10.958 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:58:10.958 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:58:10.968 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:58:10.968 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:58:10.968 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:58:10.968 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:58:10.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36371 150\n [Camera]
17-03-17 23:58:11.168 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:58:12.118 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:58:12.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:58:12.208 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:58:12.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:58:12.208 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:12.208 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:12.208 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:58:12.208 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:58:12.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:58:12.208 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:12.328 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:12.328 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:58:12.598 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:58:12.598 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:58:12.598 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:12.598 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:12.598 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:58:12.718 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 23:58:12.718 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:58:12.718 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:12.718 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:58:12.728 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-17 23:58:12.738 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36371 1422
17-03-17 23:58:12.738 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:58:13.048 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:58:13.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:58:13.048 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:13.058 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:13.058 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:58:13.458 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:58:13.458 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:58:13.458 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:13.468 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:58:13.468 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 23:58:13.478 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:58:13.478 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:58:13.478 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:58:13.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36371 150' command took 2 ms to send, 2502 ms to get response, and 2506 ms overall
17-03-17 23:58:13.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:58:13.478 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:13.478 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:13.478 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:58:13.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:58:13.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.165697562368393. ------
17-03-17 23:58:13.878 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 23:58:13.878 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 23:58:13.878 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:13.888 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:13.888 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:58:13.898 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:14.488 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:14.488 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 580 ms to get response, and 581 ms overall
17-03-17 23:58:14.488 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:58:14.488 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17203 mm
17-03-17 23:58:14.488 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:58:15.548 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:58:15.548 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1050 ms to get response, and 1059 ms overall
17-03-17 23:58:15.548 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:58:15.548 -07 000000593 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-17 23:58:15.548 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 37579, sync = True, waitForSettling = False)
17-03-17 23:58:15.548 -07 000000478 INF: Z Motor: Moving to -0.172026 mm, started at -0.165698 mm, distance = -6.33 um
17-03-17 23:58:15.558 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:15.568 -07 000000478 INF: FPGA: Xmit ZDACW 37579\n [Z Motor]
17-03-17 23:58:16.088 -07 000000459 INF: FPGA: Recv YRDPOS 149863
17-03-17 23:58:16.088 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:58:16.088 -07 000000478 INF: FPGA: 'ZDACW 37579' command took 0 ms to send, 510 ms to get response, and 537 ms overall
17-03-17 23:58:16.088 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:16.088 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 520 ms to get response, and 538 ms overall
17-03-17 23:58:16.088 -07 000000593 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:16.088 -07 000000593 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:58:16.088 -07 000000593 INF: Y Motor: Moving 1356 steps-35
17-03-17 23:58:16.088 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.993549,
17-03-17 23:58:16.088 -07 000000459 INF: FPGA: Recv ZDACR 37579
17-03-17 23:58:16.098 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:16.098 -07 000000478 INF: Z Motor: MoveAbsStepped took 546 ms (did NOT wait for settling yet))
17-03-17 23:58:16.118 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:58:16.488 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 23:58:16.488 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 405 ms overall
17-03-17 23:58:16.528 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:16.528 -07 000000478 INF: FPGA: Recv YRDPOS 151567
17-03-17 23:58:16.538 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:58:16.538 -07 000000593 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:16.538 -07 000000593 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 23:58:16.538 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 405 ms, distance = 0.847 mm, average velocity = 2.092 mm/sec
17-03-17 23:58:17.118 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:58:17.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:58:17.488 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:17.488 -07 000000462 INF: FPGA: Recv YRDPOS 151568
17-03-17 23:58:17.498 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:17.498 -07 000000593 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:17.508 -07 000000593 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:58:17.508 -07 000000593 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:58:17.508 -07 000000593 INF: Y Motor: Moved to 74.0078 after 1967 ms (table move)
17-03-17 23:58:17.518 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172026 mm (DAC = 37579)
17-03-17 23:58:17.518 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:17.518 -07 000000623 INF: FPGA: Recv ZSGSRD 36067
17-03-17 23:58:17.528 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:58:17.528 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:17.528 -07 000000623 INF: FPGA: Recv ZSGSRD 36064
17-03-17 23:58:17.538 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:17.538 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:17.538 -07 000000593 INF: FPGA: Recv ZSGSRD 36067
17-03-17 23:58:17.548 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:17.548 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:17.548 -07 000000593 INF: FPGA: Recv ZSGSRD 36067
17-03-17 23:58:17.558 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:17.558 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:17.558 -07 000000593 INF: FPGA: Recv ZSGSRD 36073
17-03-17 23:58:17.568 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:17.568 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:17.568 -07 000000593 INF: FPGA: Recv ZSGSRD 36071
17-03-17 23:58:17.578 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:17.578 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:17.578 -07 000000382 INF: FPGA: Recv ZSGSRD 36074
17-03-17 23:58:17.588 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:17.588 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:17.588 -07 000000623 INF: FPGA: Recv ZSGSRD 36072
17-03-17 23:58:17.598 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:17.598 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:17.598 -07 000000478 INF: FPGA: Recv ZSGSRD 36065
17-03-17 23:58:17.608 -07 000000618 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:17.608 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:17.608 -07 000000478 INF: FPGA: Recv ZSGSRD 36066
17-03-17 23:58:17.618 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:17.618 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:17.618 -07 000000409 INF: FPGA: Recv ZPIEZORD 32028
17-03-17 23:58:17.628 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:17.628 -07 000000618 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.734 V. Piezo Error = -8.9 V.
17-03-17 23:58:17.628 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36069 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36067 (-171.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36064 (-171.1 uncal um), Max = 36074 (-171.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:58:17.628 -07 000000618 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36069, posNoise = 5, negNoise = 5
17-03-17 23:58:17.628 -07 000000618 INF: Z Motor: After move to -0.172026, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:17.628 -07 000000618 INF: Z Motor: Settle wait time = 1969 ms, measure time = 108 ms (allowed 150 ms), total time = 2077 ms
17-03-17 23:58:17.628 -07 000000618 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:58:17.678 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3187 ms
17-03-17 23:58:17.678 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:58:17.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:17.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:17.678 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:17.678 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:17.678 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:58:17.678 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:17.678 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:17.678 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:58:17.688 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 9 ms.
17-03-17 23:58:17.688 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:58:17.708 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:58:17.708 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 26 ms.
17-03-17 23:58:17.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:58:17.758 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 23:58:18.058 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-17 23:58:18.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-17 23:58:18.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:58:18.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 23:58:18.088 -07 000000593 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:58:18.088 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 23:58:18.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-17 23:58:18.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:58:18.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:18.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:58:18.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:58:18.288 -07 000000442 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:18.288 -07 000000623 INF: Autofocus start
17-03-17 23:58:18.288 -07 000000623 INF: MeasureProfile start
17-03-17 23:58:18.288 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:18.298 -07 000000442 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:58:18.298 -07 000000442 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:58:18.298 -07 000000623 INF: MeasureProfile done
17-03-17 23:58:18.298 -07 000000623 INF: X=48  Z correction [um]=0.1739867
17-03-17 23:58:18.298 -07 000000623 INF: Autofocus finished
17-03-17 23:58:18.498 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:58:18.498 -07 000000442 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:58:18.498 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172038259752311. ----------
17-03-17 23:58:18.498 -07 000000610 INF: Cycle	80	Tile	18	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:58:18.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36130, sync = True, waitForSettling = True)
17-03-17 23:58:18.508 -07 000000610 INF: Z Motor: Moving to -0.165393 mm, started at -0.172038 mm, distance = 6.65 um
17-03-17 23:58:18.508 -07 000000610 INF: FPGA: Xmit ZDACW 36130\n [Z Motor]
17-03-17 23:58:18.508 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:58:18.518 -07 000000610 INF: FPGA: 'ZDACW 36130' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:18.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:18.518 -07 000000478 INF: FPGA: Recv ZDACR 36130
17-03-17 23:58:18.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:18.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:58:18.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:18.678 -07 000000623 INF: FPGA: Recv ZSGSRD 35036
17-03-17 23:58:18.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:18.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:18.688 -07 000000459 INF: FPGA: Recv ZSGSRD 35035
17-03-17 23:58:18.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:18.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:18.698 -07 000000623 INF: FPGA: Recv ZSGSRD 35038
17-03-17 23:58:18.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:18.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:18.708 -07 000000459 INF: FPGA: Recv ZSGSRD 35039
17-03-17 23:58:18.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:18.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:18.718 -07 000000618 INF: FPGA: Recv ZSGSRD 35040
17-03-17 23:58:18.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:18.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:18.728 -07 000000623 INF: FPGA: Recv ZSGSRD 35034
17-03-17 23:58:18.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:18.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:18.738 -07 000000618 INF: FPGA: Recv ZSGSRD 35037
17-03-17 23:58:18.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:18.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:18.748 -07 000000459 INF: FPGA: Recv ZSGSRD 35039
17-03-17 23:58:18.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:18.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:18.758 -07 000000475 INF: FPGA: Recv ZSGSRD 35036
17-03-17 23:58:18.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:18.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:18.768 -07 000000459 INF: FPGA: Recv ZSGSRD 35036
17-03-17 23:58:18.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:18.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:18.778 -07 000000459 INF: FPGA: Recv ZPIEZORD 30645
17-03-17 23:58:18.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:18.788 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.513 V. Piezo Error = -9.7 V.
17-03-17 23:58:18.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35037 (-164.5 uncal um), Error = 0.8 uncal um, Median = 35036 (-164.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35034 (-164.5 uncal um), Max = 35040 (-164.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:58:18.788 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35037, posNoise = 3, negNoise = 3
17-03-17 23:58:18.788 -07 000000610 INF: Z Motor: After move to -0.165393, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:18.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:58:18.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:18.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:18.788 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:18.788 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:18.788 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:58:18.788 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:58:18.788 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:58:18.788 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:18.788 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:58:18.788 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:18.788 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:58:18.788 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:58:18.798 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:58:18.798 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:58:18.798 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:58:18.798 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:58:18.808 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:58:18.808 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:58:18.808 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:58:18.808 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:58:18.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36306 150\n [Camera]
17-03-17 23:58:19.018 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:58:20.058 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:58:20.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:58:20.058 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:20.058 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:20.058 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:58:20.058 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:58:20.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:58:20.058 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:20.058 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:20.058 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:58:20.448 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:58:20.448 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:58:20.458 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:20.458 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:58:20.458 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:58:20.458 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:20.458 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:58:20.458 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:58:20.458 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:20.468 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:58:20.468 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36306 1422
17-03-17 23:58:20.468 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:58:20.898 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:58:20.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:58:20.898 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:20.898 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:20.898 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:58:20.898 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:58:20.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:58:20.898 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:20.898 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:20.898 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:58:21.298 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:58:21.298 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:58:21.298 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:21.298 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:58:21.298 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:58:21.298 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:21.298 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:21.308 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:58:21.308 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 23:58:21.308 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 23:58:21.318 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:58:21.318 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:58:21.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36306 150' command took 2 ms to send, 2493 ms to get response, and 2504 ms overall
17-03-17 23:58:21.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:58:21.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165408472822014. ------
17-03-17 23:58:21.318 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17139 mm
17-03-17 23:58:21.318 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:58:21.318 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:22.148 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 23:58:22.148 -07 000000576 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 23:58:22.148 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:22.678 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:22.678 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:58:22.678 -07 000000480 INF: FPGA: Recv YRDPOS 151568
17-03-17 23:58:22.678 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 520 ms to get response, and 528 ms overall
17-03-17 23:58:22.678 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1350 ms to get response, and 1351 ms overall
17-03-17 23:58:22.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:58:22.678 -07 000000576 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:22.678 -07 000000576 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:58:22.678 -07 000000576 INF: Y Motor: Moving 1352 steps-31
17-03-17 23:58:22.678 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37440, sync = True, waitForSettling = False)
17-03-17 23:58:22.678 -07 000000480 INF: Z Motor: Moving to -0.171389 mm, started at -0.165408 mm, distance = -5.98 um
17-03-17 23:58:22.678 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:58:22.688 -07 000000480 INF: FPGA: Xmit ZDACW 37440\n [Z Motor]
17-03-17 23:58:22.698 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:58:23.208 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 23:58:23.208 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:58:23.208 -07 000000480 INF: FPGA: 'ZDACW 37440' command took 0 ms to send, 510 ms to get response, and 528 ms overall
17-03-17 23:58:23.208 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 23:58:23.208 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 500 ms to get response, and 528 ms overall
17-03-17 23:58:23.208 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.001704,
17-03-17 23:58:23.208 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 520 ms to get response, and 529 ms overall
17-03-17 23:58:23.218 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:23.218 -07 000000512 INF: FPGA: Recv ZDACR 37440
17-03-17 23:58:23.228 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:58:23.228 -07 000000480 INF: Z Motor: MoveAbsStepped took 547 ms (did NOT wait for settling yet))
17-03-17 23:58:23.268 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:23.268 -07 000000459 INF: FPGA: Recv YRDPOS 153254
17-03-17 23:58:23.278 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-17 23:58:23.278 -07 000000576 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:23.278 -07 000000576 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-17 23:58:23.278 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 529 ms, distance = 0.845 mm, average velocity = 1.597 mm/sec
17-03-17 23:58:24.228 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:24.228 -07 000000480 INF: FPGA: Recv YRDPOS 153254
17-03-17 23:58:24.238 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:24.238 -07 000000576 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:24.248 -07 000000576 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:58:24.248 -07 000000576 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:58:24.248 -07 000000576 INF: Y Motor: Moved to 74.8311 after 2107 ms (table move)
17-03-17 23:58:24.258 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171389 mm (DAC = 37440)
17-03-17 23:58:24.258 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:24.258 -07 000000482 INF: FPGA: Recv ZSGSRD 35975
17-03-17 23:58:24.268 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:58:24.268 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:24.268 -07 000000512 INF: FPGA: Recv ZSGSRD 35965
17-03-17 23:58:24.278 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:24.278 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:24.278 -07 000000576 INF: FPGA: Recv ZSGSRD 35970
17-03-17 23:58:24.288 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:24.288 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:24.288 -07 000000512 INF: FPGA: Recv ZSGSRD 35965
17-03-17 23:58:24.298 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:24.298 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:24.298 -07 000000482 INF: FPGA: Recv ZSGSRD 35977
17-03-17 23:58:24.308 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:24.308 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:24.308 -07 000000627 INF: FPGA: Recv ZSGSRD 35975
17-03-17 23:58:24.318 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:24.318 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:24.318 -07 000000429 INF: FPGA: Recv ZSGSRD 35970
17-03-17 23:58:24.328 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:24.328 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:24.328 -07 000000512 INF: FPGA: Recv ZSGSRD 35972
17-03-17 23:58:24.338 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:24.338 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:24.338 -07 000000480 INF: FPGA: Recv ZSGSRD 35964
17-03-17 23:58:24.348 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:24.348 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:24.348 -07 000000627 INF: FPGA: Recv ZSGSRD 35967
17-03-17 23:58:24.358 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:24.358 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:24.358 -07 000000576 INF: FPGA: Recv ZPIEZORD 31877
17-03-17 23:58:24.368 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:24.368 -07 000000623 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.713 V. Piezo Error = -9.0 V.
17-03-17 23:58:24.368 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35970 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35970 (-170.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35964 (-170.5 uncal um), Max = 35977 (-170.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:58:24.368 -07 000000623 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35970, posNoise = 7, negNoise = 6
17-03-17 23:58:24.368 -07 000000623 INF: Z Motor: After move to -0.171389, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:24.368 -07 000000623 INF: Z Motor: Settle wait time = 1580 ms, measure time = 108 ms (allowed 150 ms), total time = 1688 ms
17-03-17 23:58:24.368 -07 000000623 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:58:24.418 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3091 ms
17-03-17 23:58:24.418 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:58:24.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:24.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:24.418 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:24.418 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:24.418 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:58:24.418 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:24.418 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:24.418 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:58:24.428 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:58:24.428 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:58:24.438 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:58:24.438 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 23:58:24.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:58:24.488 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:58:24.788 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:58:24.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:58:24.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:58:24.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) start.
17-03-17 23:58:24.828 -07 000000459 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:58:24.828 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:58:24.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 387 ms overall
17-03-17 23:58:24.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:58:24.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:24.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:58:24.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:58:24.928 -07 000000627 INF: Autofocus start
17-03-17 23:58:24.928 -07 000000627 INF: MeasureProfile start
17-03-17 23:58:24.928 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:24.928 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:24.938 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:58:24.938 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:58:24.938 -07 000000627 INF: MeasureProfile done
17-03-17 23:58:24.938 -07 000000627 INF: X=-32  Z correction [um]=-0.2344
17-03-17 23:58:24.938 -07 000000627 INF: Autofocus finished
17-03-17 23:58:25.138 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:58:25.138 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:58:25.138 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171402262750277. ----------
17-03-17 23:58:25.148 -07 000000610 INF: Cycle	80	Tile	19	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:58:25.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35901, sync = True, waitForSettling = True)
17-03-17 23:58:25.148 -07 000000610 INF: Z Motor: Moving to -0.164344 mm, started at -0.171402 mm, distance = 7.06 um
17-03-17 23:58:25.148 -07 000000610 INF: FPGA: Xmit ZDACW 35901\n [Z Motor]
17-03-17 23:58:25.148 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 23:58:25.158 -07 000000610 INF: FPGA: 'ZDACW 35901' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:58:25.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:25.158 -07 000000623 INF: FPGA: Recv ZDACR 35901
17-03-17 23:58:25.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:25.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:58:25.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:25.318 -07 000000480 INF: FPGA: Recv ZSGSRD 34872
17-03-17 23:58:25.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:25.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:25.328 -07 000000623 INF: FPGA: Recv ZSGSRD 34874
17-03-17 23:58:25.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:25.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:25.338 -07 000000482 INF: FPGA: Recv ZSGSRD 34872
17-03-17 23:58:25.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:25.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:25.348 -07 000000623 INF: FPGA: Recv ZSGSRD 34876
17-03-17 23:58:25.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:25.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:25.358 -07 000000576 INF: FPGA: Recv ZSGSRD 34867
17-03-17 23:58:25.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:25.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:25.368 -07 000000512 INF: FPGA: Recv ZSGSRD 34875
17-03-17 23:58:25.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:25.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:25.378 -07 000000482 INF: FPGA: Recv ZSGSRD 34876
17-03-17 23:58:25.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:25.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:25.388 -07 000000429 INF: FPGA: Recv ZSGSRD 34869
17-03-17 23:58:25.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:25.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:25.398 -07 000000576 INF: FPGA: Recv ZSGSRD 34873
17-03-17 23:58:25.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:25.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:25.408 -07 000000623 INF: FPGA: Recv ZSGSRD 34866
17-03-17 23:58:25.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:25.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:25.418 -07 000000482 INF: FPGA: Recv ZPIEZORD 30426
17-03-17 23:58:25.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:25.428 -07 000000610 INF: Z Motor: Piezo is near 45.0 V (nominally 0 to 100 V), expect near 54.8 V, since DAC is at 5.478 V. Piezo Error = -9.8 V.
17-03-17 23:58:25.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.3 um, Read 10 ADC samples: Avg = 34872 (-163.5 uncal um), Error = 0.9 uncal um, Median = 34872 (-163.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 34866 (-163.4 uncal um), Max = 34876 (-163.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:58:25.428 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34872, posNoise = 4, negNoise = 6
17-03-17 23:58:25.428 -07 000000610 INF: Z Motor: After move to -0.164344, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:25.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:58:25.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:25.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:25.428 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:25.428 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:25.428 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:58:25.428 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:58:25.428 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:58:25.428 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:25.428 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:58:25.428 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:58:25.428 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:25.428 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:58:25.438 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:58:25.438 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:58:25.438 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:58:25.438 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:58:25.448 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:58:25.448 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:58:25.448 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:58:25.448 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:58:25.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36078 150\n [Camera]
17-03-17 23:58:25.658 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:58:26.688 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:58:26.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:58:26.688 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:26.688 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:26.688 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:58:26.698 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:58:26.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:58:26.698 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:26.698 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:26.698 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:58:26.888 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36078 1422
17-03-17 23:58:27.038 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:58:27.078 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:58:27.078 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:58:27.078 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:27.078 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:58:27.078 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 23:58:27.078 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:27.078 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:58:27.078 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:58:27.078 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:58:27.088 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:58:27.118 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:58:27.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:58:27.538 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:58:27.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:58:27.538 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:27.538 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:27.538 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 23:58:27.538 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:58:27.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:58:27.538 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:27.538 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:27.538 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 23:58:27.728 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:58:27.728 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:58:27.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36078 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:58:27.918 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 23:58:27.918 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:58:27.918 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:27.918 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 23:58:27.918 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:58:27.918 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:27.918 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:27.928 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:58:27.928 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:58:27.928 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 23:58:27.928 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:58:28.068 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 148 ms.
17-03-17 23:58:28.068 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 23:58:28.118 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 23:58:28.118 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 23:58:28.118 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:58:28.118 -07 000000512 INF: FPGA: Recv EMCUR 
17-03-17 23:58:28.128 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:58:28.128 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 23:58:28.628 -07 000000623 INF: FPGA: Recv EMIN
17-03-17 23:58:28.628 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-17 23:58:28.648 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 23:58:28.648 -07 000000512 INF: FPGA: Recv EMCUR 
17-03-17 23:58:28.658 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:58:28.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:58:28.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164348477818623. ------
17-03-17 23:58:28.658 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:28.658 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13938 mm
17-03-17 23:58:28.658 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:58:28.658 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:28.658 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:58:28.658 -07 000000576 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-17 23:58:28.668 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:58:28.668 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:28.668 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30449, sync = True, waitForSettling = False)
17-03-17 23:58:28.668 -07 000000512 INF: Z Motor: Moving to -0.139387 mm, started at -0.164348 mm, distance = 24.96 um
17-03-17 23:58:28.668 -07 000000382 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:58:28.678 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:28.678 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:58:28.678 -07 000000576 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:28.678 -07 000000576 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 23:58:28.678 -07 000000576 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:58:28.688 -07 000000512 INF: FPGA: Xmit ZDACW 30449\n [Z Motor]
17-03-17 23:58:28.688 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:58:28.698 -07 000000512 INF: FPGA: 'ZDACW 30449' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:58:28.698 -07 000000576 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:58:28.708 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:28.708 -07 000000480 INF: FPGA: Recv ZDACR 30449
17-03-17 23:58:28.718 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:58:28.718 -07 000000512 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:58:28.878 -07 000000442 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:58:28.878 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 23:58:28.918 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.011254,
17-03-17 23:58:30.328 -07 000000409 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 23:58:30.328 -07 000000576 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1621 ms to get response, and 1644 ms overall
17-03-17 23:58:30.328 -07 000000576 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:58:30.328 -07 000000576 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-17 23:58:30.328 -07 000000576 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.918 mm, average velocity = 9.074 mm/sec
17-03-17 23:58:32.118 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:58:32.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:58:33.178 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:33.178 -07 000000478 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:58:33.188 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:33.188 -07 000000576 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:33.228 -07 000000576 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:58:33.228 -07 000000576 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 23:58:33.228 -07 000000576 INF: Y Motor: Moved to 59.9111 after 4569 ms
17-03-17 23:58:33.238 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139387 mm (DAC = 30449)
17-03-17 23:58:33.238 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:33.248 -07 000000512 INF: FPGA: Recv ZSGSRD 30996
17-03-17 23:58:33.248 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:58:33.248 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:33.248 -07 000000576 INF: FPGA: Recv ZSGSRD 30989
17-03-17 23:58:33.258 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:33.258 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:33.258 -07 000000442 INF: FPGA: Recv ZSGSRD 30987
17-03-17 23:58:33.268 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:33.268 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:33.268 -07 000000576 INF: FPGA: Recv ZSGSRD 30986
17-03-17 23:58:33.278 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:33.278 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:33.278 -07 000000442 INF: FPGA: Recv ZSGSRD 30984
17-03-17 23:58:33.288 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:33.288 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:33.288 -07 000000512 INF: FPGA: Recv ZSGSRD 30986
17-03-17 23:58:33.298 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:33.298 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:33.298 -07 000000593 INF: FPGA: Recv ZSGSRD 30987
17-03-17 23:58:33.308 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:33.308 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:33.308 -07 000000478 INF: FPGA: Recv ZSGSRD 30982
17-03-17 23:58:33.318 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:33.318 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:33.318 -07 000000478 INF: FPGA: Recv ZSGSRD 30993
17-03-17 23:58:33.328 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:33.328 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:33.328 -07 000000512 INF: FPGA: Recv ZSGSRD 30987
17-03-17 23:58:33.338 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:33.338 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:33.338 -07 000000462 INF: FPGA: Recv ZPIEZORD 26356
17-03-17 23:58:33.348 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:33.348 -07 000000623 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.646 V. Piezo Error = -10.2 V.
17-03-17 23:58:33.348 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30988 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30987 (-138.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30982 (-138.6 uncal um), Max = 30996 (-138.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:58:33.348 -07 000000623 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30988, posNoise = 8, negNoise = 6
17-03-17 23:58:33.348 -07 000000623 INF: Z Motor: After move to -0.139387, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:33.348 -07 000000623 INF: Z Motor: Settle wait time = 4576 ms, measure time = 103 ms (allowed 150 ms), total time = 4679 ms
17-03-17 23:58:33.348 -07 000000623 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 23:58:33.398 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4734 ms
17-03-17 23:58:33.398 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:58:33.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:33.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:33.398 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:58:33.398 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:33.398 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:33.398 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:33.398 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:33.398 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:58:33.418 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 23:58:33.418 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:58:33.428 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:58:33.428 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:58:33.428 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:58:33.428 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-17 23:58:33.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:58:33.478 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:58:33.778 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:58:33.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:58:33.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:58:33.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:58:33.818 -07 000000442 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:58:33.818 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 23:58:33.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 387 ms overall
17-03-17 23:58:33.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:58:33.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:33.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:58:33.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:58:33.918 -07 000000623 INF: Image SNR check: start
17-03-17 23:58:33.918 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:33.918 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:33.928 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:58:33.928 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:58:33.928 -07 000000623 INF: Image SNR check: pass  [peak (Max-Min)=104.84]
17-03-17 23:58:33.928 -07 000000623 INF: Autofocus start
17-03-17 23:58:33.928 -07 000000623 INF: MeasureProfile start
17-03-17 23:58:33.948 -07 000000623 INF: MeasureProfile done
17-03-17 23:58:33.948 -07 000000623 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:58:33.948 -07 000000623 INF: Autofocus finished
17-03-17 23:58:34.128 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:58:34.128 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:58:34.128 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139396837860024. ----------
17-03-17 23:58:34.128 -07 000000610 INF: Cycle	80	Tile	1	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:58:34.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28943, sync = True, waitForSettling = True)
17-03-17 23:58:34.138 -07 000000610 INF: Z Motor: Moving to -0.132493 mm, started at -0.139397 mm, distance = 6.90 um
17-03-17 23:58:34.138 -07 000000610 INF: FPGA: Xmit ZDACW 28943\n [Z Motor]
17-03-17 23:58:34.138 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:58:34.148 -07 000000610 INF: FPGA: 'ZDACW 28943' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:34.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:34.148 -07 000000593 INF: FPGA: Recv ZDACR 28943
17-03-17 23:58:34.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:34.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:58:34.298 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.031682,
17-03-17 23:58:34.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:34.308 -07 000000409 INF: FPGA: Recv ZSGSRD 29913
17-03-17 23:58:34.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:34.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:34.318 -07 000000478 INF: FPGA: Recv ZSGSRD 29911
17-03-17 23:58:34.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:34.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:34.348 -07 000000462 INF: FPGA: Recv ZSGSRD 29917
17-03-17 23:58:34.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:58:34.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:34.358 -07 000000462 INF: FPGA: Recv ZSGSRD 29910
17-03-17 23:58:34.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:34.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:34.378 -07 000000462 INF: FPGA: Recv ZSGSRD 29915
17-03-17 23:58:34.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:58:34.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:34.388 -07 000000462 INF: FPGA: Recv ZSGSRD 29914
17-03-17 23:58:34.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:34.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:34.398 -07 000000478 INF: FPGA: Recv ZSGSRD 29913
17-03-17 23:58:34.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:34.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:34.408 -07 000000478 INF: FPGA: Recv ZSGSRD 29914
17-03-17 23:58:34.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:34.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:34.418 -07 000000478 INF: FPGA: Recv ZSGSRD 29914
17-03-17 23:58:34.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:34.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:34.428 -07 000000462 INF: FPGA: Recv ZSGSRD 29920
17-03-17 23:58:34.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:34.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:34.438 -07 000000462 INF: FPGA: Recv ZPIEZORD 25228
17-03-17 23:58:34.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:34.448 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -10.3 V.
17-03-17 23:58:34.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29914 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29914 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29910 (-131.7 uncal um), Max = 29920 (-131.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:58:34.448 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29914, posNoise = 6, negNoise = 4
17-03-17 23:58:34.448 -07 000000610 INF: Z Motor: After move to -0.132493, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:34.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 310 ms)
17-03-17 23:58:34.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:34.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:34.448 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:34.448 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:34.448 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:58:34.448 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:34.448 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:58:34.448 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:58:34.448 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:58:34.448 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:58:34.448 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:58:34.448 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:58:34.458 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:58:34.458 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:58:34.468 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:58:34.468 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:58:34.478 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 23:58:34.478 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:58:34.478 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:58:34.478 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:58:34.488 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 23:58:34.488 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 23:58:34.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 29120 150\n [Camera]
17-03-17 23:58:34.688 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:58:35.728 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:58:35.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:58:35.728 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:35.728 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:58:35.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:58:35.728 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:35.738 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:35.738 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:58:35.738 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:35.738 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:58:35.918 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29120 1422
17-03-17 23:58:36.068 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:58:36.138 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:58:36.138 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:58:36.138 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:36.138 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:58:36.138 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:58:36.138 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:36.138 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:58:36.138 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:58:36.138 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:58:36.148 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 23:58:36.568 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:58:36.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:58:36.568 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:36.578 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:58:36.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:58:36.578 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:36.578 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:36.578 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:58:36.688 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:36.688 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:58:36.758 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:58:36.768 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:58:36.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 29120 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall
17-03-17 23:58:36.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:58:36.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.132497234019772. ------
17-03-17 23:58:36.768 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13876 mm
17-03-17 23:58:36.768 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:58:36.768 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:36.768 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:58:36.768 -07 000000593 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 23:58:36.768 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:36.768 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30313, sync = True, waitForSettling = False)
17-03-17 23:58:36.768 -07 000000459 INF: Z Motor: Moving to -0.138764 mm, started at -0.132497 mm, distance = -6.27 um
17-03-17 23:58:36.778 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:58:36.778 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:36.778 -07 000000627 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:58:36.788 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:58:36.788 -07 000000593 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:36.788 -07 000000593 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:58:36.788 -07 000000593 INF: Y Motor: Moving 1330 steps2
17-03-17 23:58:36.788 -07 000000459 INF: FPGA: Xmit ZDACW 30313\n [Z Motor]
17-03-17 23:58:36.788 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:58:36.798 -07 000000459 INF: FPGA: 'ZDACW 30313' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:58:36.798 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:58:36.808 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:58:36.818 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:36.818 -07 000000623 INF: FPGA: Recv ZDACR 30313
17-03-17 23:58:36.828 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:58:36.828 -07 000000459 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:58:36.968 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:58:36.968 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:58:36.968 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:36.968 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:36.978 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:58:36.998 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:58:36.998 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:58:37.088 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:58:37.088 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:58:37.088 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:37.088 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:58:37.088 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 23:58:37.118 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:58:37.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:58:37.178 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 23:58:37.178 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:58:37.218 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:37.218 -07 000000627 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:58:37.228 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:58:37.228 -07 000000593 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:37.228 -07 000000593 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:58:37.228 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 23:58:38.178 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:38.178 -07 000000433 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:58:38.188 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:38.188 -07 000000593 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:38.208 -07 000000593 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:58:38.208 -07 000000593 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:58:38.208 -07 000000593 INF: Y Motor: Moved to 60.7329 after 1439 ms (table move)
17-03-17 23:58:38.218 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138764 mm (DAC = 30313)
17-03-17 23:58:38.218 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:38.218 -07 000000593 INF: FPGA: Recv ZSGSRD 30894
17-03-17 23:58:38.228 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:38.228 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:38.228 -07 000000482 INF: FPGA: Recv ZSGSRD 30886
17-03-17 23:58:38.238 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:38.238 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:38.238 -07 000000482 INF: FPGA: Recv ZSGSRD 30890
17-03-17 23:58:38.248 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:38.248 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:38.248 -07 000000627 INF: FPGA: Recv ZSGSRD 30894
17-03-17 23:58:38.258 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:38.258 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:38.258 -07 000000429 INF: FPGA: Recv ZSGSRD 30894
17-03-17 23:58:38.268 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:38.268 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:38.268 -07 000000429 INF: FPGA: Recv ZSGSRD 30897
17-03-17 23:58:38.278 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:38.278 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:38.278 -07 000000442 INF: FPGA: Recv ZSGSRD 30888
17-03-17 23:58:38.288 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:38.288 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:38.288 -07 000000442 INF: FPGA: Recv ZSGSRD 30889
17-03-17 23:58:38.298 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:38.298 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:38.298 -07 000000475 INF: FPGA: Recv ZSGSRD 30892
17-03-17 23:58:38.308 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:38.308 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:38.308 -07 000000475 INF: FPGA: Recv ZSGSRD 30888
17-03-17 23:58:38.318 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:38.318 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:38.318 -07 000000429 INF: FPGA: Recv ZPIEZORD 26564
17-03-17 23:58:38.328 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:38.328 -07 000000618 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.625 V. Piezo Error = -9.5 V.
17-03-17 23:58:38.328 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30891 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30891 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30886 (-137.9 uncal um), Max = 30897 (-138.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:58:38.328 -07 000000618 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30891, posNoise = 6, negNoise = 5
17-03-17 23:58:38.328 -07 000000618 INF: Z Motor: After move to -0.138764, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:38.328 -07 000000618 INF: Z Motor: Settle wait time = 1441 ms, measure time = 110 ms (allowed 150 ms), total time = 1551 ms
17-03-17 23:58:38.328 -07 000000618 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:58:38.368 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 23:58:38.368 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:58:38.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:38.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:38.368 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:38.368 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:38.368 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:58:38.368 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:38.368 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:38.378 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:58:38.378 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:58:38.378 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:58:38.388 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:58:38.388 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:58:38.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:58:38.438 -07 000000442 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:58:38.738 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:58:38.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:58:38.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:58:38.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:58:38.778 -07 000000429 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:58:38.778 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 23:58:38.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-17 23:58:38.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:58:38.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:38.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:58:38.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:58:38.878 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:38.878 -07 000000627 INF: Autofocus start
17-03-17 23:58:38.878 -07 000000627 INF: MeasureProfile start
17-03-17 23:58:38.878 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:38.888 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:58:38.888 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:58:38.888 -07 000000627 INF: MeasureProfile done
17-03-17 23:58:38.888 -07 000000627 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 23:58:38.888 -07 000000627 INF: Autofocus finished
17-03-17 23:58:39.088 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:58:39.088 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:58:39.088 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.138773689282273. ----------
17-03-17 23:58:39.088 -07 000000610 INF: Cycle	80	Tile	2	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:58:39.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28790, sync = True, waitForSettling = True)
17-03-17 23:58:39.098 -07 000000610 INF: Z Motor: Moving to -0.131792 mm, started at -0.138774 mm, distance = 6.98 um
17-03-17 23:58:39.098 -07 000000610 INF: FPGA: Xmit ZDACW 28790\n [Z Motor]
17-03-17 23:58:39.098 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:58:39.108 -07 000000610 INF: FPGA: 'ZDACW 28790' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:39.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:39.108 -07 000000623 INF: FPGA: Recv ZDACR 28790
17-03-17 23:58:39.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:39.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:58:39.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:39.268 -07 000000475 INF: FPGA: Recv ZSGSRD 29805
17-03-17 23:58:39.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:39.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:39.278 -07 000000478 INF: FPGA: Recv ZSGSRD 29810
17-03-17 23:58:39.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:39.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:39.288 -07 000000462 INF: FPGA: Recv ZSGSRD 29802
17-03-17 23:58:39.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:39.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:39.298 -07 000000462 INF: FPGA: Recv ZSGSRD 29805
17-03-17 23:58:39.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:39.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:39.308 -07 000000462 INF: FPGA: Recv ZSGSRD 29804
17-03-17 23:58:39.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:39.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:39.318 -07 000000475 INF: FPGA: Recv ZSGSRD 29812
17-03-17 23:58:39.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:39.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:39.348 -07 000000478 INF: FPGA: Recv ZSGSRD 29801
17-03-17 23:58:39.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:58:39.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:39.358 -07 000000462 INF: FPGA: Recv ZSGSRD 29809
17-03-17 23:58:39.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:39.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:39.388 -07 000000462 INF: FPGA: Recv ZSGSRD 29809
17-03-17 23:58:39.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:58:39.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:39.418 -07 000000475 INF: FPGA: Recv ZSGSRD 29798
17-03-17 23:58:39.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:58:39.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:39.428 -07 000000462 INF: FPGA: Recv ZPIEZORD 25143
17-03-17 23:58:39.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:39.438 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -10.2 V.
17-03-17 23:58:39.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29806 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29805 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29798 (-131.0 uncal um), Max = 29812 (-131.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:58:39.438 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29806, posNoise = 6, negNoise = 8
17-03-17 23:58:39.438 -07 000000610 INF: Z Motor: After move to -0.131792, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:39.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 341 ms)
17-03-17 23:58:39.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:39.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:39.438 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:39.438 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:39.438 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:58:39.438 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:39.438 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:39.438 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:58:39.438 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:58:39.438 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:58:39.438 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:58:39.438 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:58:39.438 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:58:39.438 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:58:39.448 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:58:39.448 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:58:39.458 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:58:39.458 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:58:39.458 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:58:39.458 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:58:39.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28967 150\n [Camera]
17-03-17 23:58:39.668 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:58:39.698 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.0344,
17-03-17 23:58:40.698 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:58:40.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:58:40.698 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:40.708 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:58:40.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:58:40.708 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:40.708 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:40.708 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:58:40.708 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:40.708 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) start.
17-03-17 23:58:40.898 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28967 1422
17-03-17 23:58:41.048 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:58:41.098 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:58:41.098 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:58:41.098 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:41.108 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:58:41.108 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:58:41.108 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:41.108 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:41.108 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:58:41.108 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:41.118 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:58:41.548 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:58:41.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:58:41.548 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:41.548 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:58:41.548 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:41.548 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:58:41.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:58:41.548 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:41.548 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:41.548 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:58:41.738 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:58:41.738 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:58:41.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28967 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:58:41.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:58:41.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.131803419108462. ------
17-03-17 23:58:41.738 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13844 mm
17-03-17 23:58:41.738 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:58:41.738 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:41.748 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30243, sync = True, waitForSettling = False)
17-03-17 23:58:41.748 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:58:41.748 -07 000000512 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 23:58:41.748 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:41.748 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:41.748 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:58:41.748 -07 000000480 INF: Z Motor: Moving to -0.138444 mm, started at -0.131803 mm, distance = -6.64 um
17-03-17 23:58:41.748 -07 000000486 INF: FPGA: Recv YRDPOS 124382
17-03-17 23:58:41.758 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:58:41.758 -07 000000512 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:41.758 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:58:41.758 -07 000000512 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:58:41.758 -07 000000512 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:58:41.768 -07 000000480 INF: FPGA: Xmit ZDACW 30243\n [Z Motor]
17-03-17 23:58:41.768 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:58:41.778 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:58:41.778 -07 000000480 INF: FPGA: 'ZDACW 30243' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:58:41.788 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:41.788 -07 000000618 INF: FPGA: Recv ZDACR 30243
17-03-17 23:58:41.798 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:58:41.798 -07 000000480 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 23:58:41.948 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:58:41.948 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:58:41.948 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:41.948 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:58:41.948 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:58:41.948 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:41.948 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:41.948 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:58:41.948 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:41.958 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:58:41.958 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 23:58:41.958 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:58:42.118 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:58:42.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:58:42.148 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 23:58:42.148 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 23:58:42.198 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:42.198 -07 000000576 INF: FPGA: Recv YRDPOS 126082
17-03-17 23:58:42.208 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:42.208 -07 000000512 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:42.208 -07 000000512 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:58:42.208 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.840 mm, average velocity = 2.153 mm/sec
17-03-17 23:58:43.158 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:43.158 -07 000000382 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:58:43.168 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:43.168 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:43.188 -07 000000512 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:58:43.188 -07 000000512 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:58:43.188 -07 000000512 INF: Y Motor: Moved to 61.5640 after 1444 ms (table move)
17-03-17 23:58:43.198 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138444 mm (DAC = 30243)
17-03-17 23:58:43.198 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:43.198 -07 000000462 INF: FPGA: Recv ZSGSRD 30839
17-03-17 23:58:43.208 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:58:43.208 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:43.208 -07 000000462 INF: FPGA: Recv ZSGSRD 30840
17-03-17 23:58:43.218 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:43.218 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:43.218 -07 000000512 INF: FPGA: Recv ZSGSRD 30843
17-03-17 23:58:43.228 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:43.228 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:43.228 -07 000000512 INF: FPGA: Recv ZSGSRD 30843
17-03-17 23:58:43.238 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:43.238 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:43.238 -07 000000512 INF: FPGA: Recv ZSGSRD 30841
17-03-17 23:58:43.248 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:43.248 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:43.248 -07 000000627 INF: FPGA: Recv ZSGSRD 30839
17-03-17 23:58:43.258 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:43.258 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:43.258 -07 000000627 INF: FPGA: Recv ZSGSRD 30840
17-03-17 23:58:43.268 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:43.268 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:43.268 -07 000000627 INF: FPGA: Recv ZSGSRD 30833
17-03-17 23:58:43.278 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:43.278 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:43.278 -07 000000486 INF: FPGA: Recv ZSGSRD 30837
17-03-17 23:58:43.288 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:43.288 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:43.288 -07 000000486 INF: FPGA: Recv ZSGSRD 30841
17-03-17 23:58:43.298 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:43.298 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:43.298 -07 000000409 INF: FPGA: Recv ZPIEZORD 26550
17-03-17 23:58:43.308 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:43.308 -07 000000475 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.615 V. Piezo Error = -9.4 V.
17-03-17 23:58:43.308 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30840 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30840 (-137.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30833 (-137.6 uncal um), Max = 30843 (-137.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:58:43.308 -07 000000475 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30840, posNoise = 3, negNoise = 7
17-03-17 23:58:43.308 -07 000000475 INF: Z Motor: After move to -0.138444, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:43.308 -07 000000475 INF: Z Motor: Settle wait time = 1448 ms, measure time = 110 ms (allowed 150 ms), total time = 1558 ms
17-03-17 23:58:43.308 -07 000000475 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:58:43.348 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 23:58:43.348 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:58:43.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:43.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:43.348 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:43.348 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:43.358 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:58:43.358 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:43.358 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:43.358 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:58:43.358 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:58:43.358 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:58:43.368 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:58:43.368 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:58:43.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:58:43.418 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:58:43.708 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:58:43.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:58:43.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:58:43.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1445873368, 0x0, 559484976) start.
17-03-17 23:58:43.748 -07 000000409 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:58:43.748 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 23:58:43.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-17 23:58:43.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1445873368, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:58:43.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:43.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:58:43.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:58:43.858 -07 000000409 INF: Autofocus start
17-03-17 23:58:43.858 -07 000000409 INF: MeasureProfile start
17-03-17 23:58:43.858 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:43.868 -07 000000409 INF: MeasureProfile done
17-03-17 23:58:43.868 -07 000000409 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:58:43.868 -07 000000409 INF: Autofocus finished
17-03-17 23:58:43.868 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:43.868 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 8 ms to get response, and 14 ms overall
17-03-17 23:58:43.868 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:58:44.078 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:58:44.078 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 201 ms to get response, and 202 ms overall
17-03-17 23:58:44.078 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.138446054463043. ----------
17-03-17 23:58:44.078 -07 000000610 INF: Cycle	80	Tile	3	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:58:44.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28750, sync = True, waitForSettling = True)
17-03-17 23:58:44.088 -07 000000610 INF: Z Motor: Moving to -0.131609 mm, started at -0.138446 mm, distance = 6.84 um
17-03-17 23:58:44.088 -07 000000610 INF: FPGA: Xmit ZDACW 28750\n [Z Motor]
17-03-17 23:58:44.088 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:58:44.098 -07 000000610 INF: FPGA: 'ZDACW 28750' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:44.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:44.098 -07 000000475 INF: FPGA: Recv ZDACR 28750
17-03-17 23:58:44.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:44.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:58:44.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:44.258 -07 000000475 INF: FPGA: Recv ZSGSRD 29776
17-03-17 23:58:44.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:44.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:44.268 -07 000000475 INF: FPGA: Recv ZSGSRD 29776
17-03-17 23:58:44.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:44.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:44.278 -07 000000409 INF: FPGA: Recv ZSGSRD 29779
17-03-17 23:58:44.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:44.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:44.288 -07 000000475 INF: FPGA: Recv ZSGSRD 29772
17-03-17 23:58:44.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:44.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:44.298 -07 000000409 INF: FPGA: Recv ZSGSRD 29780
17-03-17 23:58:44.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:44.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:44.308 -07 000000475 INF: FPGA: Recv ZSGSRD 29781
17-03-17 23:58:44.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:44.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:44.318 -07 000000409 INF: FPGA: Recv ZSGSRD 29774
17-03-17 23:58:44.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:44.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:44.328 -07 000000409 INF: FPGA: Recv ZSGSRD 29782
17-03-17 23:58:44.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:44.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:44.338 -07 000000409 INF: FPGA: Recv ZSGSRD 29778
17-03-17 23:58:44.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:44.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:44.348 -07 000000409 INF: FPGA: Recv ZSGSRD 29777
17-03-17 23:58:44.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:44.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:44.358 -07 000000409 INF: FPGA: Recv ZPIEZORD 25146
17-03-17 23:58:44.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:44.368 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -10.2 V.
17-03-17 23:58:44.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29778 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29778 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29772 (-130.8 uncal um), Max = 29782 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:58:44.368 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29778, posNoise = 4, negNoise = 6
17-03-17 23:58:44.368 -07 000000610 INF: Z Motor: After move to -0.131609, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:44.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:58:44.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:44.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:44.368 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:44.368 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:44.368 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:58:44.368 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:44.368 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:58:44.368 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:58:44.368 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:58:44.368 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:58:44.368 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:44.368 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:58:44.378 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:58:44.378 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:58:44.378 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:58:44.378 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:58:44.388 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:58:44.388 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:58:44.388 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:58:44.388 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:58:44.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28927 150\n [Camera]
17-03-17 23:58:44.598 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:58:45.058 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.027603,
17-03-17 23:58:45.628 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:58:45.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:58:45.628 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:45.638 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:45.638 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:58:45.638 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:58:45.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:58:45.638 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:45.638 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:45.638 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:58:45.828 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28927 1422
17-03-17 23:58:45.978 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:58:46.018 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:58:46.018 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 23:58:46.018 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:46.018 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:46.018 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:58:46.018 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:58:46.018 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:46.028 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:46.028 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:58:46.028 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:58:46.478 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:58:46.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:58:46.478 -07 000000442 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:46.478 -07 000000442 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:46.478 -07 000000442 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:58:46.478 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:58:46.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:58:46.478 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:46.478 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:46.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:58:46.668 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:58:46.668 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:58:46.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28927 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall
17-03-17 23:58:46.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:58:46.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.131623541168493. ------
17-03-17 23:58:46.668 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13803 mm
17-03-17 23:58:46.668 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:58:46.668 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:46.678 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:58:46.678 -07 000000478 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 23:58:46.678 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:46.678 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30152, sync = True, waitForSettling = False)
17-03-17 23:58:46.678 -07 000000593 INF: Z Motor: Moving to -0.138027 mm, started at -0.131624 mm, distance = -6.40 um
17-03-17 23:58:46.688 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:46.688 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:46.688 -07 000000623 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:58:46.698 -07 000000593 INF: FPGA: Xmit ZDACW 30152\n [Z Motor]
17-03-17 23:58:46.698 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:58:46.698 -07 000000478 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:46.698 -07 000000478 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:58:46.698 -07 000000478 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:58:46.698 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:58:46.708 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:58:46.708 -07 000000593 INF: FPGA: 'ZDACW 30152' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:58:46.718 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:58:46.728 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:46.728 -07 000000475 INF: FPGA: Recv ZDACR 30152
17-03-17 23:58:46.738 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:58:46.738 -07 000000593 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 23:58:46.878 -07 000000442 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 23:58:46.878 -07 000000442 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:58:46.878 -07 000000442 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:46.878 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:58:46.878 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:58:46.878 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:46.888 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:46.888 -07 000000442 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:58:46.888 -07 000000442 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:58:46.888 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:58:46.908 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:58:46.908 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:58:47.088 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 23:58:47.088 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:58:47.118 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:58:47.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:58:47.138 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:47.718 -07 000000480 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:58:47.718 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 570 ms to get response, and 579 ms overall
17-03-17 23:58:47.718 -07 000000478 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:47.718 -07 000000478 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 23:58:47.718 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-17 23:58:48.668 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:48.668 -07 000000482 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:58:48.678 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:48.678 -07 000000478 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:48.698 -07 000000478 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:58:48.698 -07 000000478 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:58:48.698 -07 000000478 INF: Y Motor: Moved to 62.3955 after 2023 ms (table move)
17-03-17 23:58:48.698 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138027 mm (DAC = 30152)
17-03-17 23:58:48.698 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:48.708 -07 000000623 INF: FPGA: Recv ZSGSRD 30771
17-03-17 23:58:48.708 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:58:48.708 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:48.708 -07 000000482 INF: FPGA: Recv ZSGSRD 30779
17-03-17 23:58:48.718 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:58:48.718 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:48.718 -07 000000593 INF: FPGA: Recv ZSGSRD 30775
17-03-17 23:58:48.728 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:48.728 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:48.728 -07 000000429 INF: FPGA: Recv ZSGSRD 30779
17-03-17 23:58:48.738 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:48.738 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:48.738 -07 000000429 INF: FPGA: Recv ZSGSRD 30772
17-03-17 23:58:48.748 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:48.748 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:48.748 -07 000000382 INF: FPGA: Recv ZSGSRD 30770
17-03-17 23:58:48.758 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:48.758 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:48.758 -07 000000382 INF: FPGA: Recv ZSGSRD 30777
17-03-17 23:58:48.768 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:48.768 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:48.768 -07 000000382 INF: FPGA: Recv ZSGSRD 30781
17-03-17 23:58:48.778 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:48.778 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:48.778 -07 000000442 INF: FPGA: Recv ZSGSRD 30777
17-03-17 23:58:48.788 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:48.788 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:48.788 -07 000000382 INF: FPGA: Recv ZSGSRD 30779
17-03-17 23:58:48.798 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:48.798 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:48.798 -07 000000442 INF: FPGA: Recv ZPIEZORD 26488
17-03-17 23:58:48.808 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:48.808 -07 000000459 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -9.4 V.
17-03-17 23:58:48.808 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30776 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30777 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30770 (-137.2 uncal um), Max = 30781 (-137.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:58:48.808 -07 000000459 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30776, posNoise = 5, negNoise = 6
17-03-17 23:58:48.808 -07 000000459 INF: Z Motor: After move to -0.138027, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:48.808 -07 000000459 INF: Z Motor: Settle wait time = 2025 ms, measure time = 101 ms (allowed 150 ms), total time = 2126 ms
17-03-17 23:58:48.808 -07 000000459 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:58:48.858 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2180 ms
17-03-17 23:58:48.858 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:58:48.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:48.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:48.858 -07 000000442 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:48.858 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:48.858 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:58:48.858 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:48.858 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:48.858 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:58:48.868 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:58:48.868 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:58:48.878 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:58:48.878 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:58:48.878 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:58:48.928 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:58:49.228 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:58:49.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:58:49.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:58:49.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) start.
17-03-17 23:58:49.268 -07 000000482 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:58:49.268 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 23:58:49.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-17 23:58:49.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 23:58:49.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:49.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:58:49.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:58:49.368 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:49.368 -07 000000480 INF: Autofocus start
17-03-17 23:58:49.368 -07 000000480 INF: MeasureProfile start
17-03-17 23:58:49.368 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:49.378 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:58:49.378 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:58:49.378 -07 000000480 INF: MeasureProfile done
17-03-17 23:58:49.378 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:58:49.378 -07 000000480 INF: Autofocus finished
17-03-17 23:58:49.578 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:58:49.578 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:58:49.578 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.13803490488597. ----------
17-03-17 23:58:49.578 -07 000000610 INF: Cycle	80	Tile	4	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:58:49.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28659, sync = True, waitForSettling = True)
17-03-17 23:58:49.588 -07 000000610 INF: Z Motor: Moving to -0.131192 mm, started at -0.138035 mm, distance = 6.84 um
17-03-17 23:58:49.588 -07 000000610 INF: FPGA: Xmit ZDACW 28659\n [Z Motor]
17-03-17 23:58:49.588 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 23:58:49.598 -07 000000610 INF: FPGA: 'ZDACW 28659' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:49.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:49.598 -07 000000382 INF: FPGA: Recv ZDACR 28659
17-03-17 23:58:49.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:49.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:58:49.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:49.758 -07 000000478 INF: FPGA: Recv ZSGSRD 29710
17-03-17 23:58:49.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:49.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:49.768 -07 000000480 INF: FPGA: Recv ZSGSRD 29712
17-03-17 23:58:49.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:49.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:49.778 -07 000000478 INF: FPGA: Recv ZSGSRD 29716
17-03-17 23:58:49.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:49.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:49.798 -07 000000382 INF: FPGA: Recv ZSGSRD 29715
17-03-17 23:58:49.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:58:49.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:49.808 -07 000000382 INF: FPGA: Recv ZSGSRD 29707
17-03-17 23:58:49.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:49.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:49.818 -07 000000459 INF: FPGA: Recv ZSGSRD 29712
17-03-17 23:58:49.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:49.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:49.828 -07 000000382 INF: FPGA: Recv ZSGSRD 29708
17-03-17 23:58:49.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:49.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:49.838 -07 000000627 INF: FPGA: Recv ZSGSRD 29708
17-03-17 23:58:49.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:49.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:49.848 -07 000000382 INF: FPGA: Recv ZSGSRD 29711
17-03-17 23:58:49.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:49.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:49.858 -07 000000442 INF: FPGA: Recv ZSGSRD 29710
17-03-17 23:58:49.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:49.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:49.868 -07 000000382 INF: FPGA: Recv ZPIEZORD 25121
17-03-17 23:58:49.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:49.878 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -10.1 V.
17-03-17 23:58:49.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29711 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29710 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29707 (-130.4 uncal um), Max = 29716 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:58:49.878 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29711, posNoise = 5, negNoise = 4
17-03-17 23:58:49.878 -07 000000610 INF: Z Motor: After move to -0.131192, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:49.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 23:58:49.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:49.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:49.878 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:49.878 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:49.878 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:58:49.878 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:49.878 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:58:49.878 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:58:49.878 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:49.878 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:58:49.878 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:58:49.878 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:58:49.888 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:58:49.888 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:58:49.888 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:58:49.888 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:58:49.898 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:58:49.898 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:58:49.898 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:58:49.898 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:58:49.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28836 150\n [Camera]
17-03-17 23:58:50.098 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:58:50.428 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.997626,
17-03-17 23:58:51.138 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:58:51.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:58:51.138 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:51.138 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:51.138 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:58:51.148 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:58:51.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:58:51.148 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:51.148 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:51.148 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:58:51.328 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28836 1422
17-03-17 23:58:51.478 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:58:51.538 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:58:51.538 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:58:51.538 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:51.548 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:58:51.548 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:58:51.548 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:51.548 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:51.548 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:58:51.548 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:51.558 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:58:51.978 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:58:51.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:58:51.988 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:51.988 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:51.988 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 23:58:51.988 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:58:51.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:58:51.988 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:51.988 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:51.988 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 23:58:52.118 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:58:52.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:58:52.178 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-17 23:58:52.178 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:58:52.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28836 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:58:52.178 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:58:52.178 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131193118954995. ------
17-03-17 23:58:52.178 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13792 mm
17-03-17 23:58:52.178 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:58:52.178 -07 000000442 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:52.188 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:52.188 -07 000000442 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:58:52.188 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:58:52.188 -07 000000382 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 23:58:52.188 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:52.188 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30129, sync = True, waitForSettling = False)
17-03-17 23:58:52.188 -07 000000482 INF: Z Motor: Moving to -0.137922 mm, started at -0.131193 mm, distance = -6.73 um
17-03-17 23:58:52.188 -07 000000627 INF: FPGA: Recv YRDPOS 127787
17-03-17 23:58:52.198 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:58:52.198 -07 000000382 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:52.198 -07 000000482 INF: FPGA: Xmit ZDACW 30129\n [Z Motor]
17-03-17 23:58:52.198 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:58:52.198 -07 000000382 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:58:52.198 -07 000000382 INF: Y Motor: Moving 1339 steps-15
17-03-17 23:58:52.208 -07 000000442 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:58:52.208 -07 000000482 INF: FPGA: 'ZDACW 30129' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:58:52.218 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:58:52.228 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:52.228 -07 000000459 INF: FPGA: Recv ZDACR 30129
17-03-17 23:58:52.238 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:58:52.238 -07 000000482 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 23:58:52.368 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 23:58:52.368 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:58:52.368 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:52.378 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:58:52.378 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:58:52.378 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:52.378 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:52.378 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:58:52.378 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:58:52.378 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:58:52.408 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:58:52.408 -07 000000442 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 23:58:52.588 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:58:52.588 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 23:58:52.638 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:52.638 -07 000000442 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:58:52.648 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:58:52.648 -07 000000382 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:52.648 -07 000000382 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:58:52.648 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.125 mm/sec
17-03-17 23:58:53.598 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:53.598 -07 000000459 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:58:53.608 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:53.608 -07 000000382 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:53.628 -07 000000382 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:58:53.628 -07 000000382 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:58:53.628 -07 000000382 INF: Y Motor: Moved to 63.2241 after 1444 ms (table move)
17-03-17 23:58:53.638 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137922 mm (DAC = 30129)
17-03-17 23:58:53.638 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:53.638 -07 000000576 INF: FPGA: Recv ZSGSRD 30754
17-03-17 23:58:53.648 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:53.648 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:53.648 -07 000000442 INF: FPGA: Recv ZSGSRD 30756
17-03-17 23:58:53.658 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:53.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:53.658 -07 000000382 INF: FPGA: Recv ZSGSRD 30764
17-03-17 23:58:53.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:53.668 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:53.668 -07 000000433 INF: FPGA: Recv ZSGSRD 30762
17-03-17 23:58:53.678 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:53.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:53.678 -07 000000480 INF: FPGA: Recv ZSGSRD 30766
17-03-17 23:58:53.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:53.688 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:53.688 -07 000000486 INF: FPGA: Recv ZSGSRD 30756
17-03-17 23:58:53.698 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:53.698 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:53.698 -07 000000459 INF: FPGA: Recv ZSGSRD 30758
17-03-17 23:58:53.708 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:53.708 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:53.708 -07 000000433 INF: FPGA: Recv ZSGSRD 30755
17-03-17 23:58:53.718 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:53.718 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:53.718 -07 000000593 INF: FPGA: Recv ZSGSRD 30752
17-03-17 23:58:53.728 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:53.728 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:53.728 -07 000000442 INF: FPGA: Recv ZSGSRD 30761
17-03-17 23:58:53.738 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:53.738 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:53.738 -07 000000459 INF: FPGA: Recv ZPIEZORD 26511
17-03-17 23:58:53.748 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:53.748 -07 000000429 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.597 V. Piezo Error = -9.3 V.
17-03-17 23:58:53.748 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30758 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30757 (-137.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30752 (-137.1 uncal um), Max = 30766 (-137.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:58:53.748 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30758, posNoise = 8, negNoise = 6
17-03-17 23:58:53.748 -07 000000429 INF: Z Motor: After move to -0.137922, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:53.748 -07 000000429 INF: Z Motor: Settle wait time = 1446 ms, measure time = 110 ms (allowed 150 ms), total time = 1556 ms
17-03-17 23:58:53.748 -07 000000429 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:58:53.788 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 23:58:53.788 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:58:53.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:53.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:53.788 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:53.788 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:58:53.788 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:53.788 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:53.788 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:53.788 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:58:53.798 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:58:53.798 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:58:53.808 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:58:53.808 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:58:53.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:58:53.858 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:58:54.148 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:58:54.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:58:54.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:58:54.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 23:58:54.188 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:58:54.188 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 23:58:54.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-17 23:58:54.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:58:54.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:54.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:58:54.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:58:54.298 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:54.298 -07 000000512 INF: Autofocus start
17-03-17 23:58:54.298 -07 000000512 INF: MeasureProfile start
17-03-17 23:58:54.298 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:54.308 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:58:54.308 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:58:54.308 -07 000000512 INF: MeasureProfile done
17-03-17 23:58:54.308 -07 000000512 INF: X=32  Z correction [um]=0.1299841
17-03-17 23:58:54.308 -07 000000512 INF: Autofocus finished
17-03-17 23:58:54.508 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:58:54.508 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:58:54.508 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.137919269067419. ----------
17-03-17 23:58:54.508 -07 000000610 INF: Cycle	80	Tile	5	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:58:54.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28670, sync = True, waitForSettling = True)
17-03-17 23:58:54.518 -07 000000610 INF: Z Motor: Moving to -0.131243 mm, started at -0.137919 mm, distance = 6.68 um
17-03-17 23:58:54.518 -07 000000610 INF: FPGA: Xmit ZDACW 28670\n [Z Motor]
17-03-17 23:58:54.518 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:58:54.528 -07 000000610 INF: FPGA: 'ZDACW 28670' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:58:54.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:54.528 -07 000000623 INF: FPGA: Recv ZDACR 28670
17-03-17 23:58:54.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:54.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:58:54.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:54.688 -07 000000480 INF: FPGA: Recv ZSGSRD 29717
17-03-17 23:58:54.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:54.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:54.698 -07 000000478 INF: FPGA: Recv ZSGSRD 29718
17-03-17 23:58:54.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:54.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:54.708 -07 000000433 INF: FPGA: Recv ZSGSRD 29723
17-03-17 23:58:54.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:54.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:54.718 -07 000000593 INF: FPGA: Recv ZSGSRD 29717
17-03-17 23:58:54.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:54.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:54.728 -07 000000429 INF: FPGA: Recv ZSGSRD 29714
17-03-17 23:58:54.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:54.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:54.738 -07 000000618 INF: FPGA: Recv ZSGSRD 29720
17-03-17 23:58:54.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:54.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:54.748 -07 000000482 INF: FPGA: Recv ZSGSRD 29722
17-03-17 23:58:54.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:54.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:54.758 -07 000000576 INF: FPGA: Recv ZSGSRD 29724
17-03-17 23:58:54.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:54.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:54.768 -07 000000382 INF: FPGA: Recv ZSGSRD 29716
17-03-17 23:58:54.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:54.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:54.778 -07 000000478 INF: FPGA: Recv ZSGSRD 29717
17-03-17 23:58:54.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:54.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:54.788 -07 000000459 INF: FPGA: Recv ZPIEZORD 25125
17-03-17 23:58:54.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:54.798 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.375 V. Piezo Error = -10.1 V.
17-03-17 23:58:54.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29719 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29718 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29714 (-130.4 uncal um), Max = 29724 (-130.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:58:54.798 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29719, posNoise = 5, negNoise = 5
17-03-17 23:58:54.798 -07 000000610 INF: Z Motor: After move to -0.131243, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:54.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:58:54.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:54.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:54.798 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:54.798 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:54.798 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:58:54.798 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:58:54.798 -07 000000442 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:58:54.798 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:54.798 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:58:54.798 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:58:54.798 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:54.798 -07 000000442 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:58:54.808 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:58:54.808 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:58:54.808 -07 000000442 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:58:54.808 -07 000000442 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:58:54.818 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:58:54.818 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:58:54.818 -07 000000442 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:58:54.818 -07 000000442 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:58:54.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28847 150\n [Camera]
17-03-17 23:58:55.028 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:58:55.798 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.996267,
17-03-17 23:58:56.068 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:58:56.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:58:56.068 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:56.068 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:56.068 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:58:56.068 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:58:56.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:58:56.068 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:56.068 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:56.068 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 23:58:56.258 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28847 1422
17-03-17 23:58:56.408 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:58:56.468 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:58:56.468 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:58:56.468 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:56.468 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:58:56.468 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:58:56.468 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:56.468 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:56.468 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:58:56.468 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:58:56.478 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 23:58:56.908 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:58:56.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:58:56.908 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:58:56.908 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:58:56.908 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 23:58:56.908 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:58:56.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:58:56.908 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:58:56.908 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:58:56.908 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 23:58:57.098 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:58:57.098 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:58:57.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28847 150' command took 2 ms to send, 2264 ms to get response, and 2272 ms overall
17-03-17 23:58:57.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:58:57.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131244512652129. ------
17-03-17 23:58:57.098 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:57.098 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13771 mm
17-03-17 23:58:57.098 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:58:57.108 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:57.108 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:58:57.108 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:58:57.108 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30083, sync = True, waitForSettling = False)
17-03-17 23:58:57.108 -07 000000623 INF: Z Motor: Moving to -0.137711 mm, started at -0.131245 mm, distance = -6.47 um
17-03-17 23:58:57.108 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:58:57.108 -07 000000486 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 23:58:57.118 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:57.118 -07 000000482 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:58:57.118 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:58:57.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:58:57.128 -07 000000623 INF: FPGA: Xmit ZDACW 30083\n [Z Motor]
17-03-17 23:58:57.128 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:58:57.128 -07 000000486 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:57.128 -07 000000486 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:58:57.128 -07 000000486 INF: Y Motor: Moving 1342 steps-18
17-03-17 23:58:57.128 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 23:58:57.138 -07 000000623 INF: FPGA: 'ZDACW 30083' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:58:57.138 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:58:57.148 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:57.148 -07 000000482 INF: FPGA: Recv ZDACR 30083
17-03-17 23:58:57.158 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:58:57.158 -07 000000623 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 23:58:57.298 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 23:58:57.298 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:58:57.298 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:57.298 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 23:58:57.298 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:58:57.298 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:57.308 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:58:57.308 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:58:57.308 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:58:57.308 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:58:57.308 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 23:58:57.308 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:58:57.508 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 23:58:57.508 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:58:57.558 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:57.558 -07 000000433 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:58:57.568 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:58:57.568 -07 000000486 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:57.568 -07 000000486 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 23:58:57.568 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.167 mm/sec
17-03-17 23:58:58.518 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:58:58.518 -07 000000433 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:58:58.528 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:58.528 -07 000000486 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:58:58.548 -07 000000486 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:58:58.548 -07 000000486 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:58:58.548 -07 000000486 INF: Y Motor: Moved to 64.0571 after 1439 ms (table move)
17-03-17 23:58:58.548 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137711 mm (DAC = 30083)
17-03-17 23:58:58.548 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:58.558 -07 000000459 INF: FPGA: Recv ZSGSRD 30731
17-03-17 23:58:58.558 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:58:58.558 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:58.558 -07 000000593 INF: FPGA: Recv ZSGSRD 30722
17-03-17 23:58:58.568 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:58:58.568 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:58.568 -07 000000623 INF: FPGA: Recv ZSGSRD 30729
17-03-17 23:58:58.578 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:58.578 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:58.578 -07 000000429 INF: FPGA: Recv ZSGSRD 30731
17-03-17 23:58:58.588 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:58.588 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:58.588 -07 000000593 INF: FPGA: Recv ZSGSRD 30730
17-03-17 23:58:58.598 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:58.598 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:58.598 -07 000000486 INF: FPGA: Recv ZSGSRD 30721
17-03-17 23:58:58.608 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:58.608 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:58.608 -07 000000459 INF: FPGA: Recv ZSGSRD 30722
17-03-17 23:58:58.618 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:58.618 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:58.618 -07 000000429 INF: FPGA: Recv ZSGSRD 30723
17-03-17 23:58:58.628 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:58.628 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:58.628 -07 000000576 INF: FPGA: Recv ZSGSRD 30722
17-03-17 23:58:58.638 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:58.638 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:58.638 -07 000000486 INF: FPGA: Recv ZSGSRD 30732
17-03-17 23:58:58.648 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:58.648 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:58.648 -07 000000459 INF: FPGA: Recv ZPIEZORD 26522
17-03-17 23:58:58.658 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:58.658 -07 000000627 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -9.2 V.
17-03-17 23:58:58.658 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30726 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30726 (-136.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30721 (-136.9 uncal um), Max = 30732 (-137.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:58:58.658 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30726, posNoise = 6, negNoise = 5
17-03-17 23:58:58.658 -07 000000627 INF: Z Motor: After move to -0.137711, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:58.658 -07 000000627 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 23:58:58.658 -07 000000627 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:58:58.708 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 23:58:58.708 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:58:58.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:58.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:58.708 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:58.708 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:58.708 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:58:58.708 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:58.708 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:58.718 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:58:58.718 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:58:58.718 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:58:58.728 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:58:58.728 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:58:58.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:58:58.778 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:58:59.078 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:58:59.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:58:59.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:58:59.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 23:58:59.118 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:58:59.118 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 23:58:59.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-17 23:58:59.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:58:59.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:58:59.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:58:59.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:58:59.218 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:58:59.218 -07 000000593 INF: Autofocus start
17-03-17 23:58:59.218 -07 000000593 INF: MeasureProfile start
17-03-17 23:58:59.218 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:58:59.228 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:58:59.228 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:58:59.228 -07 000000593 INF: MeasureProfile done
17-03-17 23:58:59.228 -07 000000593 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:58:59.228 -07 000000593 INF: Autofocus finished
17-03-17 23:58:59.428 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:58:59.428 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:58:59.428 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.137713694278882. ----------
17-03-17 23:58:59.428 -07 000000610 INF: Cycle	80	Tile	6	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:58:59.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28591, sync = True, waitForSettling = True)
17-03-17 23:58:59.438 -07 000000610 INF: Z Motor: Moving to -0.130881 mm, started at -0.137714 mm, distance = 6.83 um
17-03-17 23:58:59.438 -07 000000610 INF: FPGA: Xmit ZDACW 28591\n [Z Motor]
17-03-17 23:58:59.438 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 23:58:59.448 -07 000000610 INF: FPGA: 'ZDACW 28591' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:58:59.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:58:59.448 -07 000000627 INF: FPGA: Recv ZDACR 28591
17-03-17 23:58:59.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:59.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:58:59.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:59.608 -07 000000627 INF: FPGA: Recv ZSGSRD 29669
17-03-17 23:58:59.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:58:59.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:59.618 -07 000000627 INF: FPGA: Recv ZSGSRD 29666
17-03-17 23:58:59.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:59.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:59.628 -07 000000627 INF: FPGA: Recv ZSGSRD 29659
17-03-17 23:58:59.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:59.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:59.638 -07 000000627 INF: FPGA: Recv ZSGSRD 29666
17-03-17 23:58:59.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:59.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:59.648 -07 000000480 INF: FPGA: Recv ZSGSRD 29666
17-03-17 23:58:59.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:59.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:59.658 -07 000000627 INF: FPGA: Recv ZSGSRD 29664
17-03-17 23:58:59.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:59.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:59.668 -07 000000486 INF: FPGA: Recv ZSGSRD 29664
17-03-17 23:58:59.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:59.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:59.678 -07 000000627 INF: FPGA: Recv ZSGSRD 29665
17-03-17 23:58:59.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:59.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:59.688 -07 000000486 INF: FPGA: Recv ZSGSRD 29668
17-03-17 23:58:59.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:59.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:58:59.698 -07 000000627 INF: FPGA: Recv ZSGSRD 29662
17-03-17 23:58:59.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:59.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:58:59.708 -07 000000627 INF: FPGA: Recv ZPIEZORD 25069
17-03-17 23:58:59.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:58:59.718 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -10.1 V.
17-03-17 23:58:59.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29665 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29666 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29659 (-130.1 uncal um), Max = 29669 (-130.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:58:59.718 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29665, posNoise = 4, negNoise = 6
17-03-17 23:58:59.718 -07 000000610 INF: Z Motor: After move to -0.130881, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:58:59.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:58:59.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:58:59.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:58:59.718 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:58:59.718 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:58:59.718 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:58:59.718 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:58:59.718 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:58:59.718 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:58:59.718 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:58:59.718 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:58:59.718 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:58:59.718 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:58:59.728 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:58:59.728 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:58:59.728 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:58:59.728 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:58:59.738 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:58:59.738 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:58:59.738 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:58:59.738 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:58:59.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28767 150\n [Camera]
17-03-17 23:58:59.938 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:59:00.978 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:59:00.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:59:00.978 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:00.978 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:00.978 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 23:59:00.988 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:59:00.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:59:00.988 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:00.988 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:00.988 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 23:59:01.168 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.983999,
17-03-17 23:59:01.168 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28767 1422
17-03-17 23:59:01.318 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:59:01.378 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:59:01.378 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:59:01.378 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:01.388 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:59:01.388 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:59:01.388 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:01.388 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:01.388 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:59:01.388 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:01.398 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:59:01.828 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:59:01.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:59:01.828 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:01.968 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:59:01.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:59:01.968 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:01.968 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 23:59:01.968 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:01.978 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:01.978 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:59:02.018 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:59:02.018 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:59:02.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28767 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:59:02.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:59:02.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.130897605196474. ------
17-03-17 23:59:02.018 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:02.018 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13736 mm
17-03-17 23:59:02.018 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:59:02.028 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:02.028 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:59:02.028 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30005, sync = True, waitForSettling = False)
17-03-17 23:59:02.028 -07 000000480 INF: Z Motor: Moving to -0.137354 mm, started at -0.130898 mm, distance = -6.46 um
17-03-17 23:59:02.028 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:59:02.028 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:59:02.028 -07 000000459 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 23:59:02.038 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:02.038 -07 000000486 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:59:02.048 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:59:02.048 -07 000000480 INF: FPGA: Xmit ZDACW 30005\n [Z Motor]
17-03-17 23:59:02.048 -07 000000459 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:02.048 -07 000000459 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:59:02.048 -07 000000459 INF: Y Motor: Moving 1337 steps-11
17-03-17 23:59:02.048 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:59:02.058 -07 000000480 INF: FPGA: 'ZDACW 30005' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 23:59:02.058 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:02.058 -07 000000623 INF: FPGA: Recv ZDACR 30005
17-03-17 23:59:02.068 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:59:02.068 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:02.068 -07 000000480 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 23:59:02.118 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:59:02.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:59:02.228 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:59:02.228 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 23:59:02.368 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:59:02.368 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:59:02.368 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:02.368 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 23:59:02.368 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:59:02.368 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:02.378 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:02.378 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 552 ms.
17-03-17 23:59:02.378 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:02.388 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:59:02.438 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 23:59:02.438 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:59:02.478 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:02.488 -07 000000475 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:59:02.488 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:59:02.488 -07 000000459 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:02.488 -07 000000459 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:59:02.488 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 23:59:03.438 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:03.438 -07 000000627 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:59:03.448 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:03.448 -07 000000459 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:03.468 -07 000000459 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:59:03.468 -07 000000459 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:59:03.468 -07 000000459 INF: Y Motor: Moved to 64.8789 after 1445 ms (table move)
17-03-17 23:59:03.478 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137354 mm (DAC = 30005)
17-03-17 23:59:03.478 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:03.478 -07 000000429 INF: FPGA: Recv ZSGSRD 30673
17-03-17 23:59:03.488 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:03.488 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:03.488 -07 000000627 INF: FPGA: Recv ZSGSRD 30669
17-03-17 23:59:03.498 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:03.498 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:03.498 -07 000000459 INF: FPGA: Recv ZSGSRD 30667
17-03-17 23:59:03.508 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:03.508 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:03.508 -07 000000623 INF: FPGA: Recv ZSGSRD 30671
17-03-17 23:59:03.518 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:03.518 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:03.518 -07 000000627 INF: FPGA: Recv ZSGSRD 30682
17-03-17 23:59:03.528 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:03.528 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:03.528 -07 000000459 INF: FPGA: Recv ZSGSRD 30678
17-03-17 23:59:03.538 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:03.538 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:03.538 -07 000000627 INF: FPGA: Recv ZSGSRD 30676
17-03-17 23:59:03.548 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:03.548 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:03.548 -07 000000480 INF: FPGA: Recv ZSGSRD 30665
17-03-17 23:59:03.558 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:03.558 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:03.558 -07 000000429 INF: FPGA: Recv ZSGSRD 30666
17-03-17 23:59:03.568 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:03.568 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:03.568 -07 000000475 INF: FPGA: Recv ZSGSRD 30658
17-03-17 23:59:03.578 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:03.578 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:03.578 -07 000000623 INF: FPGA: Recv ZPIEZORD 26419
17-03-17 23:59:03.588 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:03.588 -07 000000433 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.578 V. Piezo Error = -9.3 V.
17-03-17 23:59:03.588 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30670 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30670 (-136.6 uncal um), StdDev = 7 (0.0 uncal um), Range = 24 (0.2 uncal um), Min = 30658 (-136.5 uncal um), Max = 30682 (-136.6 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 23:59:03.588 -07 000000433 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30670, posNoise = 12, negNoise = 12
17-03-17 23:59:03.588 -07 000000433 INF: Z Motor: After move to -0.137354, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:03.588 -07 000000433 INF: Z Motor: Settle wait time = 1448 ms, measure time = 110 ms (allowed 150 ms), total time = 1558 ms
17-03-17 23:59:03.588 -07 000000433 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:59:03.628 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 23:59:03.628 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:59:03.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:03.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:03.628 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:03.628 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:03.628 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:59:03.628 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:03.628 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:59:03.628 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:59:03.628 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:59:03.638 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:59:03.638 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 23:59:03.638 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:59:03.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:59:03.688 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:59:03.988 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:59:03.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:59:03.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:59:03.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-17 23:59:04.038 -07 000000482 INF: FPGA: Recv @CAMSNAP 383
17-03-17 23:59:04.038 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 23:59:04.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 388 ms overall
17-03-17 23:59:04.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:59:04.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:04.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:59:04.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:59:04.138 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:04.138 -07 000000433 INF: Autofocus start
17-03-17 23:59:04.138 -07 000000433 INF: MeasureProfile start
17-03-17 23:59:04.138 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:04.148 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:59:04.148 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:59:04.148 -07 000000433 INF: MeasureProfile done
17-03-17 23:59:04.148 -07 000000433 INF: X=27  Z correction [um]=0.1059322
17-03-17 23:59:04.148 -07 000000433 INF: Autofocus finished
17-03-17 23:59:04.348 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:59:04.348 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:59:04.348 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137353938398944. ----------
17-03-17 23:59:04.348 -07 000000610 INF: Cycle	80	Tile	7	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:59:04.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28541, sync = True, waitForSettling = True)
17-03-17 23:59:04.358 -07 000000610 INF: Z Motor: Moving to -0.130652 mm, started at -0.137354 mm, distance = 6.70 um
17-03-17 23:59:04.358 -07 000000610 INF: FPGA: Xmit ZDACW 28541\n [Z Motor]
17-03-17 23:59:04.358 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 23:59:04.368 -07 000000610 INF: FPGA: 'ZDACW 28541' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:04.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:04.368 -07 000000623 INF: FPGA: Recv ZDACR 28541
17-03-17 23:59:04.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:04.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:59:04.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:04.528 -07 000000482 INF: FPGA: Recv ZSGSRD 29629
17-03-17 23:59:04.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:04.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:04.538 -07 000000480 INF: FPGA: Recv ZSGSRD 29632
17-03-17 23:59:04.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:59:04.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:04.548 -07 000000459 INF: FPGA: Recv ZSGSRD 29631
17-03-17 23:59:04.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:04.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:04.558 -07 000000480 INF: FPGA: Recv ZSGSRD 29625
17-03-17 23:59:04.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:04.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:04.568 -07 000000576 INF: FPGA: Recv ZSGSRD 29624
17-03-17 23:59:04.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:04.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:04.578 -07 000000475 INF: FPGA: Recv ZSGSRD 29627
17-03-17 23:59:04.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:04.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:04.588 -07 000000576 INF: FPGA: Recv ZSGSRD 29629
17-03-17 23:59:04.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:04.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:04.598 -07 000000627 INF: FPGA: Recv ZSGSRD 29629
17-03-17 23:59:04.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:04.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:04.608 -07 000000482 INF: FPGA: Recv ZSGSRD 29628
17-03-17 23:59:04.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:04.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:04.618 -07 000000475 INF: FPGA: Recv ZSGSRD 29632
17-03-17 23:59:04.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:04.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:04.628 -07 000000623 INF: FPGA: Recv ZPIEZORD 25036
17-03-17 23:59:04.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:04.638 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.355 V. Piezo Error = -10.1 V.
17-03-17 23:59:04.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29629 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29629 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29624 (-129.9 uncal um), Max = 29632 (-129.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:59:04.638 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29629, posNoise = 3, negNoise = 5
17-03-17 23:59:04.638 -07 000000610 INF: Z Motor: After move to -0.130652, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:04.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:59:04.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:04.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:04.638 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:04.638 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:04.638 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:59:04.638 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:04.638 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:59:04.638 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:59:04.638 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:04.638 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:59:04.638 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:59:04.638 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:59:04.648 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:59:04.648 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:59:04.648 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:59:04.648 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:59:04.658 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:59:04.658 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:59:04.658 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 23:59:04.658 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:59:04.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28718 150\n [Camera]
17-03-17 23:59:04.868 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:59:05.908 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:59:05.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:59:05.908 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:05.908 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:59:05.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:59:05.908 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:05.908 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:05.908 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 23:59:05.908 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:05.908 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2336209168, 0x0, 391868352) start.
17-03-17 23:59:06.098 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28718 1422
17-03-17 23:59:06.248 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:59:06.288 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:59:06.288 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:59:06.288 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:06.298 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:06.298 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:59:06.298 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2336209168, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 23:59:06.298 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:59:06.298 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:06.308 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:06.308 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:59:06.538 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.024884,
17-03-17 23:59:06.748 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:59:06.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:59:06.858 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:59:06.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:59:06.858 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:06.858 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:06.858 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:06.858 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2331803864, 0x0, 391868352) start.
17-03-17 23:59:06.868 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:06.868 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:59:06.938 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:59:06.938 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:59:06.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28718 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:59:06.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:59:06.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.13066633355937. ------
17-03-17 23:59:06.938 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:06.938 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13737 mm
17-03-17 23:59:06.938 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:59:06.948 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:59:06.948 -07 000000576 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 23:59:06.948 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:06.948 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30008, sync = True, waitForSettling = False)
17-03-17 23:59:06.948 -07 000000482 INF: Z Motor: Moving to -0.137368 mm, started at -0.130666 mm, distance = -6.70 um
17-03-17 23:59:06.948 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:06.948 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:59:06.948 -07 000000512 INF: FPGA: Recv YRDPOS 132873
17-03-17 23:59:06.958 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:06.958 -07 000000576 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:06.958 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:59:06.958 -07 000000576 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:59:06.958 -07 000000576 INF: Y Motor: Moving 1349 steps-28
17-03-17 23:59:06.968 -07 000000482 INF: FPGA: Xmit ZDACW 30008\n [Z Motor]
17-03-17 23:59:06.968 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:59:06.978 -07 000000482 INF: FPGA: 'ZDACW 30008' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:59:06.978 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:59:06.988 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:06.988 -07 000000623 INF: FPGA: Recv ZDACR 30008
17-03-17 23:59:06.998 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:59:06.998 -07 000000482 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:59:07.118 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:59:07.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:59:07.158 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:59:07.158 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 23:59:07.248 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:59:07.248 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:59:07.248 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:07.248 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:07.258 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:59:07.258 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2331803864, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:59:07.258 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:59:07.258 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:07.258 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:07.258 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:59:07.348 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 23:59:07.348 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 23:59:07.398 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:07.398 -07 000000482 INF: FPGA: Recv YRDPOS 134583
17-03-17 23:59:07.408 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:07.408 -07 000000576 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:07.408 -07 000000576 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 23:59:07.408 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.158 mm/sec
17-03-17 23:59:08.358 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:08.358 -07 000000480 INF: FPGA: Recv YRDPOS 134583
17-03-17 23:59:08.368 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:08.368 -07 000000576 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:08.388 -07 000000576 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:59:08.388 -07 000000576 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:59:08.388 -07 000000576 INF: Y Motor: Moved to 65.7144 after 1449 ms (table move)
17-03-17 23:59:08.398 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137368 mm (DAC = 30008)
17-03-17 23:59:08.398 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:08.398 -07 000000442 INF: FPGA: Recv ZSGSRD 30671
17-03-17 23:59:08.408 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:59:08.408 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:08.408 -07 000000429 INF: FPGA: Recv ZSGSRD 30683
17-03-17 23:59:08.418 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:08.418 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:08.418 -07 000000512 INF: FPGA: Recv ZSGSRD 30678
17-03-17 23:59:08.428 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:08.428 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:08.428 -07 000000480 INF: FPGA: Recv ZSGSRD 30672
17-03-17 23:59:08.438 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:08.438 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:08.438 -07 000000512 INF: FPGA: Recv ZSGSRD 30673
17-03-17 23:59:08.448 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:08.448 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:08.448 -07 000000627 INF: FPGA: Recv ZSGSRD 30664
17-03-17 23:59:08.458 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:08.458 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:08.458 -07 000000429 INF: FPGA: Recv ZSGSRD 30673
17-03-17 23:59:08.468 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:08.468 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:08.468 -07 000000480 INF: FPGA: Recv ZSGSRD 30669
17-03-17 23:59:08.478 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:08.478 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:08.478 -07 000000429 INF: FPGA: Recv ZSGSRD 30672
17-03-17 23:59:08.488 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:08.488 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:08.488 -07 000000480 INF: FPGA: Recv ZSGSRD 30678
17-03-17 23:59:08.498 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:08.498 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:08.498 -07 000000512 INF: FPGA: Recv ZPIEZORD 26420
17-03-17 23:59:08.508 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:08.508 -07 000000459 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.579 V. Piezo Error = -9.3 V.
17-03-17 23:59:08.508 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30673 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30672 (-136.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30664 (-136.5 uncal um), Max = 30683 (-136.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:59:08.508 -07 000000459 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30673, posNoise = 10, negNoise = 9
17-03-17 23:59:08.508 -07 000000459 INF: Z Motor: After move to -0.137368, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:08.508 -07 000000459 INF: Z Motor: Settle wait time = 1452 ms, measure time = 108 ms (allowed 150 ms), total time = 1560 ms
17-03-17 23:59:08.508 -07 000000459 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:59:08.558 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-17 23:59:08.558 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:59:08.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:08.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:08.558 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:08.558 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:08.558 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:59:08.558 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:08.568 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:08.568 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:59:08.568 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:59:08.568 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:59:08.568 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:59:08.568 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:59:08.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:59:08.618 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:59:08.918 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:59:08.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:59:08.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:59:08.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 23:59:08.958 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:59:08.958 -07 000000442 INF: FPGA: Recv CAMSNAP
17-03-17 23:59:08.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-17 23:59:09.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:59:09.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:09.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:59:09.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:59:09.158 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:09.158 -07 000000429 INF: Autofocus start
17-03-17 23:59:09.158 -07 000000429 INF: MeasureProfile start
17-03-17 23:59:09.158 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:09.168 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:59:09.168 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:59:09.168 -07 000000429 INF: MeasureProfile done
17-03-17 23:59:09.168 -07 000000429 INF: X=-14  Z correction [um]=-0.07155244
17-03-17 23:59:09.168 -07 000000429 INF: Autofocus finished
17-03-17 23:59:09.368 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:59:09.368 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 23:59:09.368 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137373211035369. ----------
17-03-17 23:59:09.378 -07 000000610 INF: Cycle	80	Tile	8	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:59:09.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28505, sync = True, waitForSettling = True)
17-03-17 23:59:09.378 -07 000000610 INF: Z Motor: Moving to -0.130488 mm, started at -0.137373 mm, distance = 6.89 um
17-03-17 23:59:09.378 -07 000000610 INF: FPGA: Xmit ZDACW 28505\n [Z Motor]
17-03-17 23:59:09.378 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:59:09.388 -07 000000610 INF: FPGA: 'ZDACW 28505' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:59:09.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:09.388 -07 000000382 INF: FPGA: Recv ZDACR 28505
17-03-17 23:59:09.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:09.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:59:09.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:09.548 -07 000000576 INF: FPGA: Recv ZSGSRD 29597
17-03-17 23:59:09.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:09.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:09.558 -07 000000382 INF: FPGA: Recv ZSGSRD 29602
17-03-17 23:59:09.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:09.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:09.568 -07 000000576 INF: FPGA: Recv ZSGSRD 29599
17-03-17 23:59:09.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:09.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:09.578 -07 000000627 INF: FPGA: Recv ZSGSRD 29602
17-03-17 23:59:09.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:09.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:09.588 -07 000000478 INF: FPGA: Recv ZSGSRD 29601
17-03-17 23:59:09.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:09.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:09.598 -07 000000576 INF: FPGA: Recv ZSGSRD 29603
17-03-17 23:59:09.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:09.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:09.608 -07 000000475 INF: FPGA: Recv ZSGSRD 29597
17-03-17 23:59:09.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:09.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:09.618 -07 000000442 INF: FPGA: Recv ZSGSRD 29604
17-03-17 23:59:09.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:09.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:09.628 -07 000000382 INF: FPGA: Recv ZSGSRD 29603
17-03-17 23:59:09.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:09.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:09.638 -07 000000512 INF: FPGA: Recv ZSGSRD 29600
17-03-17 23:59:09.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:09.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:09.648 -07 000000382 INF: FPGA: Recv ZPIEZORD 24988
17-03-17 23:59:09.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:09.658 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.350 V. Piezo Error = -10.1 V.
17-03-17 23:59:09.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29601 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29602 (-129.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29597 (-129.7 uncal um), Max = 29604 (-129.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:59:09.658 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29601, posNoise = 3, negNoise = 4
17-03-17 23:59:09.658 -07 000000610 INF: Z Motor: After move to -0.130488, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:09.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:59:09.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:09.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:09.658 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:09.658 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:09.658 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:59:09.658 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:59:09.658 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:59:09.658 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:09.658 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:59:09.658 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:59:09.658 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:09.658 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:59:09.668 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:59:09.668 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:59:09.668 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:59:09.668 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:59:09.678 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:59:09.678 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:59:09.678 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:59:09.678 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:59:09.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28682 150\n [Camera]
17-03-17 23:59:09.888 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:59:10.918 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:59:10.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:59:10.918 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:10.918 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:10.918 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2367226128, 0x0, 391868352) start.
17-03-17 23:59:10.928 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:59:10.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:59:10.928 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:10.928 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:10.928 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:59:11.118 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28682 1422
17-03-17 23:59:11.268 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:59:11.298 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:59:11.298 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:59:11.298 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:11.308 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:11.308 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2367226128, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:59:11.308 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:59:11.308 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:11.308 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:11.308 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:59:11.308 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:59:11.768 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:59:11.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:59:11.768 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:11.878 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:59:11.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:59:11.878 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:11.878 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:11.878 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:59:11.878 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:11.878 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:59:11.918 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.019446,
17-03-17 23:59:11.958 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:59:11.958 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:59:11.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28682 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:59:11.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:59:11.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130486455619401. ------
17-03-17 23:59:11.958 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:11.958 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13681 mm
17-03-17 23:59:11.958 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:59:11.958 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:59:11.958 -07 000000459 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 23:59:11.958 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29886, sync = True, waitForSettling = False)
17-03-17 23:59:11.968 -07 000000576 INF: Z Motor: Moving to -0.136809 mm, started at -0.130486 mm, distance = -6.32 um
17-03-17 23:59:11.968 -07 000000576 INF: FPGA: Xmit ZDACW 29886\n [Z Motor]
17-03-17 23:59:11.968 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:11.968 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:59:11.968 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:59:11.978 -07 000000576 INF: FPGA: 'ZDACW 29886' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:11.978 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:11.978 -07 000000623 INF: FPGA: Recv ZDACR 29886
17-03-17 23:59:11.988 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:11.988 -07 000000576 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:11.988 -07 000000576 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 23:59:11.988 -07 000000576 INF: FPGA: Recv YRDPOS 134583
17-03-17 23:59:11.998 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:59:11.998 -07 000000459 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:11.998 -07 000000459 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:59:11.998 -07 000000459 INF: Y Motor: Moving 1341 steps-17
17-03-17 23:59:11.998 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:59:12.008 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:59:12.118 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:59:12.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:59:12.198 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:59:12.198 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 233 ms overall
17-03-17 23:59:12.278 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:59:12.278 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:59:12.278 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:12.288 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:59:12.288 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:59:12.288 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:12.288 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:12.288 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 23:59:12.288 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:12.298 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 23:59:12.378 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 23:59:12.378 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:59:12.428 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:12.428 -07 000000433 INF: FPGA: Recv YRDPOS 136273
17-03-17 23:59:12.438 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:12.438 -07 000000459 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:12.438 -07 000000459 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 23:59:12.438 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.166 mm/sec
17-03-17 23:59:13.388 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:13.388 -07 000000623 INF: FPGA: Recv YRDPOS 136273
17-03-17 23:59:13.398 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:13.398 -07 000000459 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:13.418 -07 000000459 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:59:13.418 -07 000000459 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:59:13.418 -07 000000459 INF: Y Motor: Moved to 66.5396 after 1458 ms (table move)
17-03-17 23:59:13.428 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136809 mm (DAC = 29886)
17-03-17 23:59:13.428 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:13.428 -07 000000576 INF: FPGA: Recv ZSGSRD 30588
17-03-17 23:59:13.438 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:59:13.438 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:13.438 -07 000000459 INF: FPGA: Recv ZSGSRD 30584
17-03-17 23:59:13.448 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:13.448 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:13.448 -07 000000478 INF: FPGA: Recv ZSGSRD 30593
17-03-17 23:59:13.458 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:13.458 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:13.458 -07 000000623 INF: FPGA: Recv ZSGSRD 30593
17-03-17 23:59:13.468 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:13.468 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:13.468 -07 000000618 INF: FPGA: Recv ZSGSRD 30580
17-03-17 23:59:13.478 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:13.478 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:13.478 -07 000000576 INF: FPGA: Recv ZSGSRD 30584
17-03-17 23:59:13.488 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:13.488 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:13.488 -07 000000459 INF: FPGA: Recv ZSGSRD 30584
17-03-17 23:59:13.498 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:13.498 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:13.498 -07 000000623 INF: FPGA: Recv ZSGSRD 30586
17-03-17 23:59:13.508 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:13.508 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:13.508 -07 000000478 INF: FPGA: Recv ZSGSRD 30583
17-03-17 23:59:13.518 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:13.518 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:13.518 -07 000000576 INF: FPGA: Recv ZSGSRD 30589
17-03-17 23:59:13.528 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:13.528 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:13.528 -07 000000618 INF: FPGA: Recv ZPIEZORD 26323
17-03-17 23:59:13.538 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:13.538 -07 000000480 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -9.4 V.
17-03-17 23:59:13.538 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30586 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30585 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30580 (-136.0 uncal um), Max = 30593 (-136.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:59:13.538 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30586, posNoise = 7, negNoise = 6
17-03-17 23:59:13.538 -07 000000480 INF: Z Motor: After move to -0.136809, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:13.538 -07 000000480 INF: Z Motor: Settle wait time = 1463 ms, measure time = 107 ms (allowed 150 ms), total time = 1570 ms
17-03-17 23:59:13.538 -07 000000480 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 23:59:13.588 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-17 23:59:13.588 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:59:13.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:13.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:13.588 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:13.588 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:59:13.588 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:13.588 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:13.588 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:13.588 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:59:13.598 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:59:13.598 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:59:13.608 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:59:13.608 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:59:13.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:59:13.658 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:59:13.958 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:59:13.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:59:13.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:59:13.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 23:59:13.988 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:59:13.998 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 23:59:13.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-17 23:59:14.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:59:14.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:14.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:59:14.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:59:14.098 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:14.098 -07 000000480 INF: Autofocus start
17-03-17 23:59:14.098 -07 000000480 INF: MeasureProfile start
17-03-17 23:59:14.098 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:14.108 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:59:14.108 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:59:14.108 -07 000000480 INF: MeasureProfile done
17-03-17 23:59:14.108 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:59:14.108 -07 000000480 INF: Autofocus finished
17-03-17 23:59:14.308 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:59:14.308 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:59:14.308 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.136814304579036. ----------
17-03-17 23:59:14.308 -07 000000610 INF: Cycle	80	Tile	9	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:59:14.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28394, sync = True, waitForSettling = True)
17-03-17 23:59:14.318 -07 000000610 INF: Z Motor: Moving to -0.129979 mm, started at -0.136814 mm, distance = 6.83 um
17-03-17 23:59:14.318 -07 000000610 INF: FPGA: Xmit ZDACW 28394\n [Z Motor]
17-03-17 23:59:14.318 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:59:14.328 -07 000000610 INF: FPGA: 'ZDACW 28394' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:59:14.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:14.328 -07 000000618 INF: FPGA: Recv ZDACR 28394
17-03-17 23:59:14.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:14.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:59:14.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:14.488 -07 000000480 INF: FPGA: Recv ZSGSRD 29523
17-03-17 23:59:14.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:14.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:14.498 -07 000000482 INF: FPGA: Recv ZSGSRD 29521
17-03-17 23:59:14.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:14.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:14.508 -07 000000459 INF: FPGA: Recv ZSGSRD 29525
17-03-17 23:59:14.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:14.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:14.518 -07 000000576 INF: FPGA: Recv ZSGSRD 29524
17-03-17 23:59:14.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:14.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:14.528 -07 000000618 INF: FPGA: Recv ZSGSRD 29521
17-03-17 23:59:14.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:14.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:14.538 -07 000000478 INF: FPGA: Recv ZSGSRD 29525
17-03-17 23:59:14.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:14.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:14.548 -07 000000433 INF: FPGA: Recv ZSGSRD 29527
17-03-17 23:59:14.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:14.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:14.558 -07 000000482 INF: FPGA: Recv ZSGSRD 29531
17-03-17 23:59:14.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:14.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:14.568 -07 000000576 INF: FPGA: Recv ZSGSRD 29521
17-03-17 23:59:14.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:14.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:14.578 -07 000000459 INF: FPGA: Recv ZSGSRD 29518
17-03-17 23:59:14.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:14.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:14.588 -07 000000459 INF: FPGA: Recv ZPIEZORD 24898
17-03-17 23:59:14.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:14.598 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -10.1 V.
17-03-17 23:59:14.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29524 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29524 (-129.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29518 (-129.2 uncal um), Max = 29531 (-129.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:59:14.598 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29524, posNoise = 7, negNoise = 6
17-03-17 23:59:14.598 -07 000000610 INF: Z Motor: After move to -0.129979, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:14.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:59:14.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:14.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:14.598 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:14.598 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:14.598 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:59:14.598 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:59:14.598 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:59:14.598 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:14.598 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:59:14.598 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:59:14.598 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:14.598 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:59:14.608 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:59:14.608 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:59:14.608 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:59:14.608 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:59:14.618 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:59:14.618 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:59:14.618 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:59:14.618 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:59:14.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28570 150\n [Camera]
17-03-17 23:59:14.828 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:59:15.858 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:59:15.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:59:15.858 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:15.858 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:15.858 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:59:15.868 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:59:15.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:59:15.868 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:15.868 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:15.868 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:59:16.058 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28570 1422
17-03-17 23:59:16.208 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:59:16.268 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:59:16.368 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 503 ms.
17-03-17 23:59:16.368 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-17 23:59:16.368 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:16.368 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 23:59:16.368 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:16.378 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:16.378 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:16.378 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 23:59:16.378 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-17 23:59:16.708 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:59:16.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:59:16.708 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:16.708 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:59:16.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:59:16.708 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:16.718 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:16.718 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:59:16.718 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:16.718 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:59:16.898 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:59:16.898 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:59:16.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28570 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall
17-03-17 23:59:16.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:59:16.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.129991791284486. ------
17-03-17 23:59:16.898 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:16.898 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13674 mm
17-03-17 23:59:16.898 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:59:16.908 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:16.908 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:59:16.908 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:59:16.908 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29871, sync = True, waitForSettling = False)
17-03-17 23:59:16.908 -07 000000623 INF: Z Motor: Moving to -0.136741 mm, started at -0.129992 mm, distance = -6.75 um
17-03-17 23:59:16.908 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:59:16.908 -07 000000576 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 23:59:16.918 -07 000000623 INF: FPGA: Xmit ZDACW 29871\n [Z Motor]
17-03-17 23:59:16.918 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:59:16.928 -07 000000623 INF: FPGA: 'ZDACW 29871' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:59:16.928 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:16.928 -07 000000429 INF: FPGA: Recv YRDPOS 136273
17-03-17 23:59:16.938 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:59:16.938 -07 000000576 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:16.938 -07 000000576 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:59:16.938 -07 000000576 INF: Y Motor: Moving 1349 steps-27
17-03-17 23:59:16.938 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:59:16.948 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:16.948 -07 000000618 INF: FPGA: Recv ZDACR 29871
17-03-17 23:59:16.958 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:59:16.958 -07 000000623 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 23:59:17.108 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:59:17.108 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 23:59:17.108 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:59:17.118 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:59:17.118 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:17.118 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:59:17.118 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:59:17.118 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:17.118 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:17.118 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:59:17.118 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:17.118 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:59:17.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:59:17.128 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 23:59:17.288 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.016692,
17-03-17 23:59:17.308 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 23:59:17.308 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 23:59:17.358 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:17.358 -07 000000593 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:59:17.368 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:17.368 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:17.368 -07 000000576 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 23:59:17.368 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.230 mm/sec
17-03-17 23:59:18.318 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:18.318 -07 000000593 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:59:18.328 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:18.328 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:18.348 -07 000000576 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:59:18.348 -07 000000576 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:59:18.348 -07 000000576 INF: Y Motor: Moved to 67.3721 after 1443 ms (table move)
17-03-17 23:59:18.358 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136741 mm (DAC = 29871)
17-03-17 23:59:18.358 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:18.358 -07 000000618 INF: FPGA: Recv ZSGSRD 30568
17-03-17 23:59:18.368 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:59:18.368 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:18.368 -07 000000576 INF: FPGA: Recv ZSGSRD 30572
17-03-17 23:59:18.378 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:18.378 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:18.378 -07 000000576 INF: FPGA: Recv ZSGSRD 30580
17-03-17 23:59:18.388 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:18.388 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:18.388 -07 000000593 INF: FPGA: Recv ZSGSRD 30576
17-03-17 23:59:18.398 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:18.398 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:18.398 -07 000000576 INF: FPGA: Recv ZSGSRD 30574
17-03-17 23:59:18.408 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:18.408 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:18.408 -07 000000618 INF: FPGA: Recv ZSGSRD 30576
17-03-17 23:59:18.418 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:18.418 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:18.418 -07 000000618 INF: FPGA: Recv ZSGSRD 30571
17-03-17 23:59:18.428 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:18.428 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:18.428 -07 000000593 INF: FPGA: Recv ZSGSRD 30576
17-03-17 23:59:18.438 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:18.438 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:18.438 -07 000000618 INF: FPGA: Recv ZSGSRD 30568
17-03-17 23:59:18.448 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:18.448 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:18.448 -07 000000576 INF: FPGA: Recv ZSGSRD 30575
17-03-17 23:59:18.458 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:18.458 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:18.458 -07 000000623 INF: FPGA: Recv ZPIEZORD 26341
17-03-17 23:59:18.468 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:18.468 -07 000000478 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.558 V. Piezo Error = -9.3 V.
17-03-17 23:59:18.468 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30574 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30574 (-135.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30568 (-135.9 uncal um), Max = 30580 (-136.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:59:18.468 -07 000000478 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30574, posNoise = 6, negNoise = 6
17-03-17 23:59:18.468 -07 000000478 INF: Z Motor: After move to -0.136741, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:18.468 -07 000000478 INF: Z Motor: Settle wait time = 1448 ms, measure time = 108 ms (allowed 150 ms), total time = 1556 ms
17-03-17 23:59:18.468 -07 000000478 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:59:18.518 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-17 23:59:18.518 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:59:18.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:18.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:18.518 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:18.518 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:18.518 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:59:18.518 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:18.518 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:18.518 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:59:18.528 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:59:18.528 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:59:18.528 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:59:18.528 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:59:18.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:59:18.578 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:59:18.878 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:59:18.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:59:18.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:59:18.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 23:59:18.918 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:59:18.918 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 23:59:18.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-17 23:59:19.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:59:19.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:19.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:59:19.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:59:19.118 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:19.118 -07 000000576 INF: Autofocus start
17-03-17 23:59:19.118 -07 000000576 INF: MeasureProfile start
17-03-17 23:59:19.118 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:19.128 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:59:19.128 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:59:19.128 -07 000000576 INF: MeasureProfile done
17-03-17 23:59:19.128 -07 000000576 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:59:19.128 -07 000000576 INF: Autofocus finished
17-03-17 23:59:19.328 -07 000000442 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:59:19.328 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:59:19.328 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.136737214033335. ----------
17-03-17 23:59:19.328 -07 000000610 INF: Cycle	80	Tile	10	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:59:19.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28366, sync = True, waitForSettling = True)
17-03-17 23:59:19.338 -07 000000610 INF: Z Motor: Moving to -0.129851 mm, started at -0.136737 mm, distance = 6.89 um
17-03-17 23:59:19.338 -07 000000610 INF: FPGA: Xmit ZDACW 28366\n [Z Motor]
17-03-17 23:59:19.338 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:59:19.348 -07 000000610 INF: FPGA: 'ZDACW 28366' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:19.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:19.348 -07 000000593 INF: FPGA: Recv ZDACR 28366
17-03-17 23:59:19.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:19.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:59:19.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:19.508 -07 000000478 INF: FPGA: Recv ZSGSRD 29505
17-03-17 23:59:19.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:19.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:19.518 -07 000000512 INF: FPGA: Recv ZSGSRD 29503
17-03-17 23:59:19.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:19.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:19.528 -07 000000623 INF: FPGA: Recv ZSGSRD 29500
17-03-17 23:59:19.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:19.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:19.538 -07 000000382 INF: FPGA: Recv ZSGSRD 29501
17-03-17 23:59:19.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:19.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:19.548 -07 000000478 INF: FPGA: Recv ZSGSRD 29504
17-03-17 23:59:19.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:19.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:19.558 -07 000000576 INF: FPGA: Recv ZSGSRD 29508
17-03-17 23:59:19.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:19.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:19.568 -07 000000623 INF: FPGA: Recv ZSGSRD 29500
17-03-17 23:59:19.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:19.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:19.578 -07 000000512 INF: FPGA: Recv ZSGSRD 29502
17-03-17 23:59:19.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:19.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:19.588 -07 000000382 INF: FPGA: Recv ZSGSRD 29502
17-03-17 23:59:19.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:19.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:19.598 -07 000000576 INF: FPGA: Recv ZSGSRD 29507
17-03-17 23:59:19.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:19.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:19.608 -07 000000618 INF: FPGA: Recv ZPIEZORD 24885
17-03-17 23:59:19.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:19.618 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.328 V. Piezo Error = -10.1 V.
17-03-17 23:59:19.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29503 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29502 (-129.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29500 (-129.1 uncal um), Max = 29508 (-129.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:59:19.618 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29503, posNoise = 5, negNoise = 3
17-03-17 23:59:19.618 -07 000000610 INF: Z Motor: After move to -0.129851, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:19.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 23:59:19.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:19.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:19.618 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:19.618 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:19.618 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:59:19.618 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:19.618 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:59:19.618 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:59:19.618 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:19.618 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:59:19.618 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:59:19.618 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:59:19.628 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:59:19.628 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:59:19.628 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:59:19.628 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:59:19.638 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:59:19.638 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:59:19.638 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:59:19.638 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:59:19.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28542 150\n [Camera]
17-03-17 23:59:19.848 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:59:20.878 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:59:20.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:59:20.878 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:20.878 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:20.878 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:59:20.888 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:59:20.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:59:20.888 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:20.888 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:20.888 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:59:21.078 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28542 1422
17-03-17 23:59:21.228 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:59:21.268 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:59:21.268 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 23:59:21.268 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:21.268 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:21.268 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:59:21.268 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:59:21.268 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:21.278 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:21.278 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:59:21.278 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:59:21.728 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:59:21.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:59:21.728 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:21.728 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:21.728 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:59:21.728 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:59:21.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:59:21.728 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:21.728 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:21.728 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:59:21.918 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:59:21.918 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:59:21.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28542 150' command took 4 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:59:21.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:59:21.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.129856882829509. ------
17-03-17 23:59:21.928 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13628 mm
17-03-17 23:59:21.928 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:59:21.928 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:21.928 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:59:21.928 -07 000000623 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 23:59:21.928 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:21.928 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29771, sync = True, waitForSettling = False)
17-03-17 23:59:21.928 -07 000000478 INF: Z Motor: Moving to -0.136283 mm, started at -0.129857 mm, distance = -6.43 um
17-03-17 23:59:21.938 -07 000000478 INF: FPGA: Xmit ZDACW 29771\n [Z Motor]
17-03-17 23:59:21.938 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:21.938 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:59:21.948 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:21.948 -07 000000478 INF: FPGA: 'ZDACW 29771' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:59:21.948 -07 000000627 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:59:21.958 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:59:21.958 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:59:21.958 -07 000000623 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:21.958 -07 000000623 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:59:21.958 -07 000000623 INF: Y Motor: Moving 1345 steps-22
17-03-17 23:59:21.968 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:21.968 -07 000000593 INF: FPGA: Recv ZDACR 29771
17-03-17 23:59:21.978 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:59:21.978 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:59:21.978 -07 000000478 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 23:59:22.118 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:59:22.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:59:22.128 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:59:22.128 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:59:22.128 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:22.128 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:59:22.128 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:59:22.128 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:22.128 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:22.138 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:59:22.138 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:59:22.138 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:59:22.158 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:59:22.158 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:59:22.348 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:59:22.348 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:59:22.398 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:22.398 -07 000000486 INF: FPGA: Recv YRDPOS 139684
17-03-17 23:59:22.408 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:59:22.408 -07 000000623 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:22.408 -07 000000623 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 23:59:22.408 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.117 mm/sec
17-03-17 23:59:22.658 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.012614,
17-03-17 23:59:23.358 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:23.358 -07 000000627 INF: FPGA: Recv YRDPOS 139685
17-03-17 23:59:23.368 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:23.368 -07 000000623 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:23.388 -07 000000623 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:59:23.388 -07 000000623 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:59:23.388 -07 000000623 INF: Y Motor: Moved to 68.2056 after 1463 ms (table move)
17-03-17 23:59:23.388 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136283 mm (DAC = 29771)
17-03-17 23:59:23.388 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:23.398 -07 000000593 INF: FPGA: Recv ZSGSRD 30509
17-03-17 23:59:23.408 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:23.408 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:23.408 -07 000000409 INF: FPGA: Recv ZSGSRD 30510
17-03-17 23:59:23.418 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:23.418 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:23.418 -07 000000623 INF: FPGA: Recv ZSGSRD 30501
17-03-17 23:59:23.428 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:23.428 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:23.428 -07 000000409 INF: FPGA: Recv ZSGSRD 30509
17-03-17 23:59:23.438 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:23.438 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:23.438 -07 000000593 INF: FPGA: Recv ZSGSRD 30501
17-03-17 23:59:23.448 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:23.448 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:23.448 -07 000000409 INF: FPGA: Recv ZSGSRD 30495
17-03-17 23:59:23.458 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:23.458 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:23.458 -07 000000593 INF: FPGA: Recv ZSGSRD 30500
17-03-17 23:59:23.468 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:23.468 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:23.468 -07 000000623 INF: FPGA: Recv ZSGSRD 30503
17-03-17 23:59:23.478 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:23.478 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:23.478 -07 000000623 INF: FPGA: Recv ZSGSRD 30509
17-03-17 23:59:23.488 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:23.488 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:23.488 -07 000000593 INF: FPGA: Recv ZSGSRD 30502
17-03-17 23:59:23.498 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:23.498 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:23.498 -07 000000623 INF: FPGA: Recv ZPIEZORD 26252
17-03-17 23:59:23.508 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:23.508 -07 000000576 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.543 V. Piezo Error = -9.3 V.
17-03-17 23:59:23.508 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30504 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30502 (-135.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30495 (-135.4 uncal um), Max = 30510 (-135.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:59:23.508 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30504, posNoise = 6, negNoise = 9
17-03-17 23:59:23.508 -07 000000576 INF: Z Motor: After move to -0.136283, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:23.508 -07 000000576 INF: Z Motor: Settle wait time = 1465 ms, measure time = 111 ms (allowed 150 ms), total time = 1576 ms
17-03-17 23:59:23.508 -07 000000576 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:59:23.548 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-17 23:59:23.548 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:59:23.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:23.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:23.548 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:23.548 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:23.548 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:59:23.548 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:23.548 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:23.548 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:59:23.558 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:59:23.558 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:59:23.568 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:59:23.568 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:59:23.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:59:23.618 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:59:23.918 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:59:23.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:59:23.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:59:23.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) start.
17-03-17 23:59:23.958 -07 000000409 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:59:23.958 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 23:59:23.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-17 23:59:24.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:59:24.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:24.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:59:24.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:59:24.058 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:24.058 -07 000000593 INF: Autofocus start
17-03-17 23:59:24.058 -07 000000593 INF: MeasureProfile start
17-03-17 23:59:24.058 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:24.068 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:59:24.068 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:59:24.068 -07 000000593 INF: MeasureProfile done
17-03-17 23:59:24.068 -07 000000593 INF: X=32  Z correction [um]=0.1299841
17-03-17 23:59:24.068 -07 000000593 INF: Autofocus finished
17-03-17 23:59:24.268 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:59:24.268 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:59:24.268 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136287519183411. ----------
17-03-17 23:59:24.268 -07 000000610 INF: Cycle	80	Tile	11	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:59:24.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28312, sync = True, waitForSettling = True)
17-03-17 23:59:24.278 -07 000000610 INF: Z Motor: Moving to -0.129604 mm, started at -0.136288 mm, distance = 6.68 um
17-03-17 23:59:24.278 -07 000000610 INF: FPGA: Xmit ZDACW 28312\n [Z Motor]
17-03-17 23:59:24.278 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:59:24.288 -07 000000610 INF: FPGA: 'ZDACW 28312' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:24.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:24.288 -07 000000409 INF: FPGA: Recv ZDACR 28312
17-03-17 23:59:24.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:24.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:59:24.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:24.448 -07 000000576 INF: FPGA: Recv ZSGSRD 29467
17-03-17 23:59:24.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:24.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:24.458 -07 000000409 INF: FPGA: Recv ZSGSRD 29463
17-03-17 23:59:24.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:24.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:24.468 -07 000000593 INF: FPGA: Recv ZSGSRD 29464
17-03-17 23:59:24.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:24.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:24.478 -07 000000623 INF: FPGA: Recv ZSGSRD 29456
17-03-17 23:59:24.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:24.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:24.488 -07 000000576 INF: FPGA: Recv ZSGSRD 29466
17-03-17 23:59:24.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:24.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:24.498 -07 000000593 INF: FPGA: Recv ZSGSRD 29469
17-03-17 23:59:24.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:24.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:24.508 -07 000000593 INF: FPGA: Recv ZSGSRD 29460
17-03-17 23:59:24.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:24.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:24.518 -07 000000576 INF: FPGA: Recv ZSGSRD 29469
17-03-17 23:59:24.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:24.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:24.528 -07 000000623 INF: FPGA: Recv ZSGSRD 29467
17-03-17 23:59:24.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:24.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:24.538 -07 000000593 INF: FPGA: Recv ZSGSRD 29460
17-03-17 23:59:24.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:24.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:24.548 -07 000000409 INF: FPGA: Recv ZPIEZORD 24880
17-03-17 23:59:24.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:24.558 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -10.1 V.
17-03-17 23:59:24.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29464 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29465 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29456 (-128.8 uncal um), Max = 29469 (-128.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:59:24.558 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29464, posNoise = 5, negNoise = 8
17-03-17 23:59:24.558 -07 000000610 INF: Z Motor: After move to -0.129604, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:24.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:59:24.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:24.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:24.558 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:24.558 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:59:24.558 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:59:24.558 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:24.558 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:59:24.558 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:24.558 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:59:24.558 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:59:24.558 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:24.558 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:59:24.558 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:59:24.558 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:59:24.568 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:59:24.568 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:59:24.578 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:59:24.578 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:59:24.578 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:59:24.578 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:59:24.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28489 150\n [Camera]
17-03-17 23:59:24.778 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:59:25.818 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:59:25.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:59:25.818 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:25.818 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:25.818 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:59:25.828 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:59:25.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:59:25.828 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:25.828 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:25.828 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:59:26.018 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28489 1422
17-03-17 23:59:26.158 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:59:26.218 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:59:26.218 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:59:26.228 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:26.228 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:59:26.228 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:59:26.228 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:26.228 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:26.228 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:59:26.228 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:26.238 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:59:26.668 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:59:26.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:59:26.668 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:26.668 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:26.668 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 23:59:26.668 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:59:26.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:59:26.668 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:26.668 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:26.668 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 23:59:26.858 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-17 23:59:26.858 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:59:26.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28489 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:59:26.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:59:26.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.12960633855598. ------
17-03-17 23:59:26.858 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:26.858 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13635 mm
17-03-17 23:59:26.858 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:59:26.868 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:26.868 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:59:26.868 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:59:26.868 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 29785, sync = True, waitForSettling = False)
17-03-17 23:59:26.868 -07 000000409 INF: Z Motor: Moving to -0.136347 mm, started at -0.129606 mm, distance = -6.74 um
17-03-17 23:59:26.868 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:59:26.868 -07 000000482 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 23:59:26.878 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:26.878 -07 000000459 INF: FPGA: Recv YRDPOS 139685
17-03-17 23:59:26.888 -07 000000409 INF: FPGA: Xmit ZDACW 29785\n [Z Motor]
17-03-17 23:59:26.888 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:59:26.888 -07 000000482 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:26.888 -07 000000482 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:59:26.888 -07 000000482 INF: Y Motor: Moving 1339 steps-15
17-03-17 23:59:26.888 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:59:26.898 -07 000000409 INF: FPGA: 'ZDACW 29785' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:59:26.898 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:26.898 -07 000000623 INF: FPGA: Recv ZDACR 29785
17-03-17 23:59:26.908 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:59:26.908 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:26.908 -07 000000409 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 23:59:27.068 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:59:27.068 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:59:27.068 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:59:27.068 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:27.068 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 23:59:27.068 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:59:27.068 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:59:27.068 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:27.078 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:27.078 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:59:27.078 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:59:27.078 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:59:27.118 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:59:27.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:59:27.278 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:59:27.278 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:59:27.328 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:27.328 -07 000000576 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:59:27.338 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:59:27.338 -07 000000482 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:27.338 -07 000000482 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 23:59:27.338 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-17 23:59:28.028 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.969015,
17-03-17 23:59:28.288 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:28.288 -07 000000475 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:59:28.298 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:28.298 -07 000000482 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:28.318 -07 000000482 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:59:28.318 -07 000000482 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:59:28.318 -07 000000482 INF: Y Motor: Moved to 69.0273 after 1454 ms (table move)
17-03-17 23:59:28.328 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136347 mm (DAC = 29785)
17-03-17 23:59:28.328 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:28.328 -07 000000576 INF: FPGA: Recv ZSGSRD 30522
17-03-17 23:59:28.338 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:59:28.338 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:28.338 -07 000000409 INF: FPGA: Recv ZSGSRD 30510
17-03-17 23:59:28.348 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:28.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:28.348 -07 000000409 INF: FPGA: Recv ZSGSRD 30515
17-03-17 23:59:28.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:28.358 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:28.358 -07 000000409 INF: FPGA: Recv ZSGSRD 30520
17-03-17 23:59:28.368 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:28.368 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:28.368 -07 000000409 INF: FPGA: Recv ZSGSRD 30516
17-03-17 23:59:28.378 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:28.378 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:28.378 -07 000000409 INF: FPGA: Recv ZSGSRD 30514
17-03-17 23:59:28.388 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:28.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:28.388 -07 000000409 INF: FPGA: Recv ZSGSRD 30506
17-03-17 23:59:28.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:28.398 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:28.398 -07 000000409 INF: FPGA: Recv ZSGSRD 30514
17-03-17 23:59:28.408 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:28.408 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:28.408 -07 000000409 INF: FPGA: Recv ZSGSRD 30513
17-03-17 23:59:28.418 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:28.418 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:28.418 -07 000000409 INF: FPGA: Recv ZSGSRD 30512
17-03-17 23:59:28.428 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:28.428 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:28.428 -07 000000409 INF: FPGA: Recv ZPIEZORD 26311
17-03-17 23:59:28.438 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:28.438 -07 000000627 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.545 V. Piezo Error = -9.2 V.
17-03-17 23:59:28.438 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30514 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30514 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30506 (-135.5 uncal um), Max = 30522 (-135.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:59:28.438 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30514, posNoise = 8, negNoise = 8
17-03-17 23:59:28.438 -07 000000627 INF: Z Motor: After move to -0.136347, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:28.438 -07 000000627 INF: Z Motor: Settle wait time = 1459 ms, measure time = 108 ms (allowed 150 ms), total time = 1567 ms
17-03-17 23:59:28.438 -07 000000627 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:59:28.488 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-17 23:59:28.488 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:59:28.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:28.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:28.488 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:28.488 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:28.498 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:59:28.498 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:28.498 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:28.498 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:59:28.498 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:59:28.498 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:59:28.508 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:59:28.508 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:59:28.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:59:28.548 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:59:28.848 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:59:28.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:59:28.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:59:28.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 23:59:28.888 -07 000000409 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:59:28.888 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 23:59:28.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-17 23:59:28.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:59:28.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:28.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:59:28.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:59:29.088 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:29.088 -07 000000409 INF: Autofocus start
17-03-17 23:59:29.088 -07 000000409 INF: MeasureProfile start
17-03-17 23:59:29.098 -07 000000409 INF: MeasureProfile done
17-03-17 23:59:29.098 -07 000000409 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:59:29.098 -07 000000409 INF: Autofocus finished
17-03-17 23:59:29.108 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:29.108 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 10 ms to get response, and 14 ms overall
17-03-17 23:59:29.108 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:59:29.308 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:59:29.308 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:59:29.308 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136351761304829. ----------
17-03-17 23:59:29.318 -07 000000610 INF: Cycle	80	Tile	12	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:59:29.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28280, sync = True, waitForSettling = True)
17-03-17 23:59:29.318 -07 000000610 INF: Z Motor: Moving to -0.129458 mm, started at -0.136352 mm, distance = 6.89 um
17-03-17 23:59:29.318 -07 000000610 INF: FPGA: Xmit ZDACW 28280\n [Z Motor]
17-03-17 23:59:29.318 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:59:29.328 -07 000000610 INF: FPGA: 'ZDACW 28280' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:59:29.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:29.328 -07 000000409 INF: FPGA: Recv ZDACR 28280
17-03-17 23:59:29.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:29.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:59:29.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:29.488 -07 000000429 INF: FPGA: Recv ZSGSRD 29439
17-03-17 23:59:29.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:29.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:29.498 -07 000000478 INF: FPGA: Recv ZSGSRD 29445
17-03-17 23:59:29.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:29.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:29.508 -07 000000429 INF: FPGA: Recv ZSGSRD 29448
17-03-17 23:59:29.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:29.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:29.518 -07 000000627 INF: FPGA: Recv ZSGSRD 29440
17-03-17 23:59:29.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:29.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:29.528 -07 000000429 INF: FPGA: Recv ZSGSRD 29440
17-03-17 23:59:29.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:29.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:29.538 -07 000000627 INF: FPGA: Recv ZSGSRD 29445
17-03-17 23:59:29.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:29.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:29.548 -07 000000429 INF: FPGA: Recv ZSGSRD 29447
17-03-17 23:59:29.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:29.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:29.558 -07 000000478 INF: FPGA: Recv ZSGSRD 29439
17-03-17 23:59:29.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:29.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:29.568 -07 000000429 INF: FPGA: Recv ZSGSRD 29439
17-03-17 23:59:29.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:29.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:29.578 -07 000000409 INF: FPGA: Recv ZSGSRD 29438
17-03-17 23:59:29.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:29.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:29.588 -07 000000429 INF: FPGA: Recv ZPIEZORD 24883
17-03-17 23:59:29.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:29.598 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.315 V. Piezo Error = -10.0 V.
17-03-17 23:59:29.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29442 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29440 (-128.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29438 (-128.7 uncal um), Max = 29448 (-128.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:59:29.598 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29442, posNoise = 6, negNoise = 4
17-03-17 23:59:29.598 -07 000000610 INF: Z Motor: After move to -0.129458, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:29.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:59:29.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:29.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:29.598 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:29.598 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:59:29.598 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:29.598 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:59:29.598 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:59:29.598 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:29.598 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:29.598 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:59:29.598 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:59:29.598 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:59:29.608 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:59:29.608 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:59:29.608 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:59:29.608 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:59:29.618 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:59:29.618 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:59:29.618 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:59:29.618 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:59:29.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28456 150\n [Camera]
17-03-17 23:59:29.828 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:59:30.858 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:59:30.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:59:30.868 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:30.868 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:30.868 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:59:30.868 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:59:30.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:59:30.868 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:30.868 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:30.868 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:59:31.058 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28456 1422
17-03-17 23:59:31.208 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:59:31.248 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 23:59:31.248 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:59:31.248 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:31.258 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:31.258 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:59:31.258 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:59:31.258 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:31.258 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:31.258 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:59:31.258 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:59:31.708 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:59:31.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:59:31.708 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:31.708 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:31.708 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 23:59:31.708 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:59:31.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:59:31.708 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:31.708 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:31.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:59:31.898 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:59:31.898 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:59:31.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28456 150' command took 2 ms to send, 2264 ms to get response, and 2272 ms overall
17-03-17 23:59:31.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:59:31.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129465005888861. ------
17-03-17 23:59:31.898 -07 000000442 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:31.898 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13577 mm
17-03-17 23:59:31.898 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:59:31.908 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:31.908 -07 000000442 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:59:31.908 -07 000000442 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:59:31.908 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29659, sync = True, waitForSettling = False)
17-03-17 23:59:31.908 -07 000000618 INF: Z Motor: Moving to -0.135770 mm, started at -0.129465 mm, distance = -6.31 um
17-03-17 23:59:31.908 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:59:31.908 -07 000000593 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 23:59:31.918 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:31.918 -07 000000512 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:59:31.928 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:59:31.928 -07 000000593 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:31.928 -07 000000593 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:59:31.928 -07 000000593 INF: Y Motor: Moving 1352 steps-31
17-03-17 23:59:31.928 -07 000000618 INF: FPGA: Xmit ZDACW 29659\n [Z Motor]
17-03-17 23:59:31.928 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:59:31.938 -07 000000618 INF: FPGA: 'ZDACW 29659' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:59:31.938 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:31.938 -07 000000459 INF: FPGA: Recv ZDACR 29659
17-03-17 23:59:31.948 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:59:31.948 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:31.948 -07 000000618 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 23:59:32.108 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:59:32.108 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:59:32.108 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:32.108 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:59:32.108 -07 000000442 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 23:59:32.108 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:59:32.108 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:59:32.108 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:32.118 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:32.118 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:59:32.118 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:59:32.118 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:59:32.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:59:32.128 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:59:32.318 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:59:32.318 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:59:32.368 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:32.368 -07 000000627 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:59:32.378 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:32.378 -07 000000593 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:32.378 -07 000000593 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:59:32.378 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-17 23:59:33.328 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:33.718 -07 000000486 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:59:33.718 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 381 ms to get response, and 391 ms overall
17-03-17 23:59:33.718 -07 000000593 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:33.718 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.954032,
17-03-17 23:59:33.748 -07 000000593 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:59:33.748 -07 000000593 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:59:33.748 -07 000000593 INF: Y Motor: Moved to 69.8633 after 1835 ms (table move)
17-03-17 23:59:33.748 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135770 mm (DAC = 29659)
17-03-17 23:59:33.768 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:33.768 -07 000000486 INF: FPGA: Recv ZSGSRD 30427
17-03-17 23:59:33.778 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:59:33.778 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:33.778 -07 000000382 INF: FPGA: Recv ZSGSRD 30429
17-03-17 23:59:33.788 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:33.788 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:33.788 -07 000000442 INF: FPGA: Recv ZSGSRD 30418
17-03-17 23:59:33.798 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:33.798 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:33.798 -07 000000382 INF: FPGA: Recv ZSGSRD 30425
17-03-17 23:59:33.808 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:33.808 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:33.808 -07 000000486 INF: FPGA: Recv ZSGSRD 30424
17-03-17 23:59:33.818 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:33.818 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:33.818 -07 000000593 INF: FPGA: Recv ZSGSRD 30425
17-03-17 23:59:33.828 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:33.828 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:33.828 -07 000000459 INF: FPGA: Recv ZSGSRD 30428
17-03-17 23:59:33.838 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:33.838 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:33.838 -07 000000593 INF: FPGA: Recv ZSGSRD 30419
17-03-17 23:59:33.848 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:33.848 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:33.848 -07 000000486 INF: FPGA: Recv ZSGSRD 30429
17-03-17 23:59:33.858 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:33.858 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:33.858 -07 000000409 INF: FPGA: Recv ZSGSRD 30420
17-03-17 23:59:33.868 -07 000000433 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:33.868 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:33.868 -07 000000429 INF: FPGA: Recv ZPIEZORD 26163
17-03-17 23:59:33.878 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:33.878 -07 000000433 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.526 V. Piezo Error = -9.4 V.
17-03-17 23:59:33.878 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.8 um, Read 10 ADC samples: Avg = 30424 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30425 (-135.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30418 (-134.9 uncal um), Max = 30429 (-135.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:59:33.878 -07 000000433 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30424, posNoise = 5, negNoise = 6
17-03-17 23:59:33.878 -07 000000433 INF: Z Motor: After move to -0.135770, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:33.878 -07 000000433 INF: Z Motor: Settle wait time = 1839 ms, measure time = 127 ms (allowed 150 ms), total time = 1966 ms
17-03-17 23:59:33.878 -07 000000433 INF: Z Motor: Waiting extra 23 ms after reading position to reach expected total of 150 ms
17-03-17 23:59:33.908 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2000 ms
17-03-17 23:59:33.908 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:59:33.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:33.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:33.908 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:33.908 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:33.908 -07 000000442 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:59:33.908 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:33.908 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:33.908 -07 000000442 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:59:33.908 -07 000000442 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:59:33.908 -07 000000442 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:59:33.918 -07 000000442 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 23:59:33.918 -07 000000442 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:59:33.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:59:33.968 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:59:34.268 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:59:34.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:59:34.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:59:34.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 23:59:34.308 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:59:34.308 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 23:59:34.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-17 23:59:34.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:59:34.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:34.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:59:34.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:59:34.508 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:34.508 -07 000000618 INF: Autofocus start
17-03-17 23:59:34.508 -07 000000618 INF: MeasureProfile start
17-03-17 23:59:34.508 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:34.518 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:59:34.518 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:59:34.518 -07 000000618 INF: MeasureProfile done
17-03-17 23:59:34.518 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:59:34.518 -07 000000618 INF: Autofocus finished
17-03-17 23:59:34.718 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:59:34.718 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 2 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 23:59:34.718 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.13577358221207. ----------
17-03-17 23:59:34.728 -07 000000610 INF: Cycle	80	Tile	13	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:59:34.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28166, sync = True, waitForSettling = True)
17-03-17 23:59:34.728 -07 000000610 INF: Z Motor: Moving to -0.128936 mm, started at -0.135774 mm, distance = 6.84 um
17-03-17 23:59:34.728 -07 000000610 INF: FPGA: Xmit ZDACW 28166\n [Z Motor]
17-03-17 23:59:34.728 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:59:34.738 -07 000000610 INF: FPGA: 'ZDACW 28166' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:59:34.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:34.738 -07 000000459 INF: FPGA: Recv ZDACR 28166
17-03-17 23:59:34.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:34.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:59:34.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:34.898 -07 000000512 INF: FPGA: Recv ZSGSRD 29361
17-03-17 23:59:34.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:34.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:34.908 -07 000000486 INF: FPGA: Recv ZSGSRD 29359
17-03-17 23:59:34.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:34.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:34.918 -07 000000512 INF: FPGA: Recv ZSGSRD 29366
17-03-17 23:59:34.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:59:34.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:34.928 -07 000000433 INF: FPGA: Recv ZSGSRD 29362
17-03-17 23:59:34.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:34.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:34.938 -07 000000382 INF: FPGA: Recv ZSGSRD 29358
17-03-17 23:59:34.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:34.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:34.948 -07 000000618 INF: FPGA: Recv ZSGSRD 29366
17-03-17 23:59:34.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:34.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:34.958 -07 000000382 INF: FPGA: Recv ZSGSRD 29359
17-03-17 23:59:34.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:34.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:34.968 -07 000000429 INF: FPGA: Recv ZSGSRD 29361
17-03-17 23:59:34.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:34.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:34.978 -07 000000459 INF: FPGA: Recv ZSGSRD 29356
17-03-17 23:59:34.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:34.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:34.988 -07 000000512 INF: FPGA: Recv ZSGSRD 29359
17-03-17 23:59:34.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:34.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:34.998 -07 000000382 INF: FPGA: Recv ZPIEZORD 24766
17-03-17 23:59:35.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:35.008 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.298 V. Piezo Error = -10.1 V.
17-03-17 23:59:35.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29361 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29360 (-128.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29356 (-128.1 uncal um), Max = 29366 (-128.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:59:35.008 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29361, posNoise = 5, negNoise = 5
17-03-17 23:59:35.008 -07 000000610 INF: Z Motor: After move to -0.128936, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:35.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:59:35.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:35.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:35.008 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:35.008 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:35.008 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:59:35.008 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:35.008 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:59:35.008 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:59:35.008 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:35.008 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:59:35.008 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:59:35.008 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:59:35.018 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:59:35.018 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:59:35.018 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:59:35.018 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:59:35.028 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:59:35.028 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:59:35.028 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:59:35.028 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:59:35.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28343 150\n [Camera]
17-03-17 23:59:35.238 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:59:36.278 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:59:36.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:59:36.278 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:36.278 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:36.278 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 23:59:36.278 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:59:36.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:59:36.278 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:36.278 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:36.278 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 23:59:36.468 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28343 1422
17-03-17 23:59:36.618 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:59:36.678 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:59:36.678 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:59:36.678 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:36.678 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:59:36.678 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:59:36.678 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:36.678 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:36.678 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:59:36.688 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:36.698 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 23:59:37.118 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:59:37.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:59:37.118 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:37.118 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:37.118 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 23:59:37.118 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:59:37.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:59:37.118 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:37.268 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:59:37.268 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:59:37.278 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:37.278 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:59:37.308 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:59:37.308 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:59:37.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28343 150' command took 2 ms to send, 2264 ms to get response, and 2274 ms overall
17-03-17 23:59:37.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:59:37.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.128944644705378. ------
17-03-17 23:59:37.308 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:37.318 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13520 mm
17-03-17 23:59:37.318 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:59:37.318 -07 000000442 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:37.318 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:59:37.318 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 29534, sync = True, waitForSettling = False)
17-03-17 23:59:37.318 -07 000000512 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 23:59:37.318 -07 000000593 INF: Z Motor: Moving to -0.135198 mm, started at -0.128945 mm, distance = -6.25 um
17-03-17 23:59:37.328 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:37.328 -07 000000593 INF: FPGA: Xmit ZDACW 29534\n [Z Motor]
17-03-17 23:59:37.328 -07 000000442 INF: FPGA: Recv ZDACW
17-03-17 23:59:37.338 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:37.338 -07 000000593 INF: FPGA: 'ZDACW 29534' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:59:37.338 -07 000000480 INF: FPGA: Recv YRDPOS 143081
17-03-17 23:59:37.348 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:59:37.348 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:59:37.348 -07 000000512 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:37.348 -07 000000512 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:59:37.348 -07 000000512 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:59:37.358 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:37.358 -07 000000382 INF: FPGA: Recv ZDACR 29534
17-03-17 23:59:37.368 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:59:37.368 -07 000000593 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 23:59:37.368 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:59:37.538 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 419 ms.
17-03-17 23:59:37.538 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 420 ms.
17-03-17 23:59:37.538 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:37.538 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:59:37.538 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 426 ms.
17-03-17 23:59:37.548 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:59:37.548 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:59:37.658 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:59:37.658 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 23:59:37.658 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:37.658 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:59:37.668 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 547 ms.
17-03-17 23:59:37.738 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 23:59:37.738 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 23:59:37.788 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:37.788 -07 000000442 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:59:37.798 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:59:37.798 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:37.798 -07 000000512 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:59:37.798 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.125 mm/sec
17-03-17 23:59:38.748 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:38.748 -07 000000442 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:59:38.758 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:38.758 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:38.778 -07 000000512 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:59:38.778 -07 000000512 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:59:38.778 -07 000000512 INF: Y Motor: Moved to 70.6885 after 1465 ms (table move)
17-03-17 23:59:38.788 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135198 mm (DAC = 29534)
17-03-17 23:59:38.788 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:38.788 -07 000000480 INF: FPGA: Recv ZSGSRD 30340
17-03-17 23:59:38.798 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:59:38.798 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:38.798 -07 000000480 INF: FPGA: Recv ZSGSRD 30335
17-03-17 23:59:38.808 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:38.808 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:38.808 -07 000000593 INF: FPGA: Recv ZSGSRD 30336
17-03-17 23:59:38.818 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:38.818 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:38.818 -07 000000593 INF: FPGA: Recv ZSGSRD 30340
17-03-17 23:59:38.828 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:38.828 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:38.828 -07 000000593 INF: FPGA: Recv ZSGSRD 30337
17-03-17 23:59:38.838 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:38.838 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:38.838 -07 000000593 INF: FPGA: Recv ZSGSRD 30336
17-03-17 23:59:38.848 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:38.848 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:38.848 -07 000000593 INF: FPGA: Recv ZSGSRD 30334
17-03-17 23:59:38.858 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:38.858 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:38.858 -07 000000593 INF: FPGA: Recv ZSGSRD 30334
17-03-17 23:59:38.868 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:38.868 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:38.868 -07 000000593 INF: FPGA: Recv ZSGSRD 30338
17-03-17 23:59:38.878 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:38.878 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:38.878 -07 000000442 INF: FPGA: Recv ZSGSRD 30335
17-03-17 23:59:38.888 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:38.888 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:38.888 -07 000000442 INF: FPGA: Recv ZPIEZORD 26060
17-03-17 23:59:38.898 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:38.898 -07 000000429 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.507 V. Piezo Error = -9.4 V.
17-03-17 23:59:38.898 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30336 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30336 (-134.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30334 (-134.4 uncal um), Max = 30340 (-134.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 23:59:38.898 -07 000000429 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30336, posNoise = 4, negNoise = 2
17-03-17 23:59:38.898 -07 000000429 INF: Z Motor: After move to -0.135198, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:38.898 -07 000000429 INF: Z Motor: Settle wait time = 1470 ms, measure time = 106 ms (allowed 150 ms), total time = 1576 ms
17-03-17 23:59:38.898 -07 000000429 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 23:59:38.948 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-17 23:59:38.948 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:59:38.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:38.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:38.948 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:38.948 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:38.948 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:59:38.948 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:38.948 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:38.948 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:59:38.958 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:59:38.958 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:59:38.968 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:59:38.968 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:59:38.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:59:39.018 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:59:39.318 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:59:39.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:59:39.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:59:39.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-17 23:59:39.348 -07 000000593 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:59:39.358 -07 000000442 INF: FPGA: Recv CAMSNAP
17-03-17 23:59:39.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-17 23:59:39.358 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 3.994908,
17-03-17 23:59:39.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:59:39.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:39.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:59:39.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:59:39.458 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:39.458 -07 000000433 INF: Autofocus start
17-03-17 23:59:39.458 -07 000000433 INF: MeasureProfile start
17-03-17 23:59:39.458 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:39.468 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:59:39.468 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:59:39.468 -07 000000433 INF: MeasureProfile done
17-03-17 23:59:39.468 -07 000000433 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:59:39.468 -07 000000433 INF: Autofocus finished
17-03-17 23:59:39.668 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:59:39.668 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:59:39.668 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135208251543595. ----------
17-03-17 23:59:39.668 -07 000000610 INF: Cycle	80	Tile	14	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:59:39.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28029, sync = True, waitForSettling = True)
17-03-17 23:59:39.678 -07 000000610 INF: Z Motor: Moving to -0.128309 mm, started at -0.135208 mm, distance = 6.90 um
17-03-17 23:59:39.678 -07 000000610 INF: FPGA: Xmit ZDACW 28029\n [Z Motor]
17-03-17 23:59:39.678 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:59:39.688 -07 000000610 INF: FPGA: 'ZDACW 28029' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:59:39.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:39.688 -07 000000512 INF: FPGA: Recv ZDACR 28029
17-03-17 23:59:39.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:39.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:59:39.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:39.848 -07 000000512 INF: FPGA: Recv ZSGSRD 29269
17-03-17 23:59:39.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:39.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:39.858 -07 000000593 INF: FPGA: Recv ZSGSRD 29266
17-03-17 23:59:39.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:39.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:39.868 -07 000000512 INF: FPGA: Recv ZSGSRD 29259
17-03-17 23:59:39.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:39.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:39.878 -07 000000593 INF: FPGA: Recv ZSGSRD 29268
17-03-17 23:59:39.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:39.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:39.888 -07 000000429 INF: FPGA: Recv ZSGSRD 29265
17-03-17 23:59:39.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:39.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:39.898 -07 000000618 INF: FPGA: Recv ZSGSRD 29260
17-03-17 23:59:39.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:39.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:39.908 -07 000000512 INF: FPGA: Recv ZSGSRD 29256
17-03-17 23:59:39.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:39.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:39.918 -07 000000593 INF: FPGA: Recv ZSGSRD 29266
17-03-17 23:59:39.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:39.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:39.928 -07 000000512 INF: FPGA: Recv ZSGSRD 29267
17-03-17 23:59:39.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:39.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:39.938 -07 000000593 INF: FPGA: Recv ZSGSRD 29262
17-03-17 23:59:39.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:39.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:39.948 -07 000000429 INF: FPGA: Recv ZPIEZORD 24652
17-03-17 23:59:39.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:39.958 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.277 V. Piezo Error = -10.1 V.
17-03-17 23:59:39.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29264 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29266 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29256 (-127.5 uncal um), Max = 29269 (-127.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:59:39.958 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29264, posNoise = 5, negNoise = 8
17-03-17 23:59:39.958 -07 000000610 INF: Z Motor: After move to -0.128309, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:39.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:59:39.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:39.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:39.958 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:39.958 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:39.958 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:59:39.958 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:59:39.958 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:59:39.958 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:39.958 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:59:39.958 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:59:39.958 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:39.958 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:59:39.968 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:59:39.968 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:59:39.968 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:59:39.968 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:59:39.978 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:59:39.978 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:59:39.978 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:59:39.978 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:59:39.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28206 150\n [Camera]
17-03-17 23:59:40.188 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:59:41.218 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:59:41.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:59:41.218 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:41.228 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:59:41.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:59:41.228 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:41.228 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:41.228 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 23:59:41.228 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:41.228 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2470426896, 0x0, 391868352) start.
17-03-17 23:59:41.418 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28206 1422
17-03-17 23:59:41.558 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:59:41.618 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:59:41.628 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:59:41.628 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:41.628 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2470426896, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:59:41.628 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:59:41.628 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:41.628 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:41.628 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:41.628 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:59:41.638 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 23:59:42.068 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:59:42.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:59:42.068 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:42.178 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:59:42.178 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:59:42.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:59:42.178 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:59:42.178 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:42.178 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:42.178 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 23:59:42.178 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:42.178 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:59:42.258 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:59:42.258 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:59:42.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28206 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:59:42.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:59:42.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128321496127628. ------
17-03-17 23:59:42.258 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:42.258 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13494 mm
17-03-17 23:59:42.258 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:59:42.258 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:59:42.258 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29477, sync = True, waitForSettling = False)
17-03-17 23:59:42.268 -07 000000480 INF: Z Motor: Moving to -0.134937 mm, started at -0.128321 mm, distance = -6.62 um
17-03-17 23:59:42.268 -07 000000480 INF: FPGA: Xmit ZDACW 29477\n [Z Motor]
17-03-17 23:59:42.268 -07 000000459 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 23:59:42.278 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:42.578 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:59:42.578 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:59:42.578 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:42.578 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 23:59:42.578 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:59:42.578 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:42.588 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:42.588 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:42.588 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 23:59:42.588 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:59:42.598 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:42.598 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 23:59:42.598 -07 000000433 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:59:42.598 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 314 ms to get response, and 333 ms overall
17-03-17 23:59:42.598 -07 000000459 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:42.598 -07 000000459 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:59:42.598 -07 000000459 INF: Y Motor: Moving 1351 steps-29
17-03-17 23:59:42.598 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:59:42.598 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 334 ms to get response, and 337 ms overall
17-03-17 23:59:42.598 -07 000000480 INF: FPGA: 'ZDACW 29477' command took 0 ms to send, 324 ms to get response, and 334 ms overall
17-03-17 23:59:42.608 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:42.608 -07 000000433 INF: FPGA: Recv ZDACR 29477
17-03-17 23:59:42.618 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:59:42.618 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:59:42.618 -07 000000480 INF: Z Motor: MoveAbsStepped took 350 ms (did NOT wait for settling yet))
17-03-17 23:59:42.818 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:59:42.818 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-17 23:59:42.978 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 23:59:42.978 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 374 ms to get response, and 378 ms overall
17-03-17 23:59:43.018 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:43.018 -07 000000382 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:59:43.028 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:59:43.028 -07 000000459 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:43.028 -07 000000459 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:59:43.028 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.844 mm, average velocity = 2.227 mm/sec
17-03-17 23:59:43.978 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:43.978 -07 000000433 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:59:43.988 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:43.988 -07 000000459 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:44.008 -07 000000459 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:59:44.008 -07 000000459 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:59:44.008 -07 000000459 INF: Y Motor: Moved to 71.5190 after 1749 ms (table move)
17-03-17 23:59:44.018 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134937 mm (DAC = 29477)
17-03-17 23:59:44.018 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:44.018 -07 000000459 INF: FPGA: Recv ZSGSRD 30302
17-03-17 23:59:44.028 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:59:44.028 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:44.028 -07 000000459 INF: FPGA: Recv ZSGSRD 30289
17-03-17 23:59:44.038 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:44.038 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:44.038 -07 000000480 INF: FPGA: Recv ZSGSRD 30294
17-03-17 23:59:44.048 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:44.048 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:44.048 -07 000000382 INF: FPGA: Recv ZSGSRD 30302
17-03-17 23:59:44.058 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:44.058 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:44.058 -07 000000459 INF: FPGA: Recv ZSGSRD 30298
17-03-17 23:59:44.068 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:44.068 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:44.068 -07 000000459 INF: FPGA: Recv ZSGSRD 30294
17-03-17 23:59:44.078 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:44.078 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:44.078 -07 000000480 INF: FPGA: Recv ZSGSRD 30293
17-03-17 23:59:44.088 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:44.098 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:44.098 -07 000000480 INF: FPGA: Recv ZSGSRD 30292
17-03-17 23:59:44.108 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:59:44.108 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:44.108 -07 000000433 INF: FPGA: Recv ZSGSRD 30293
17-03-17 23:59:44.118 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:44.118 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:44.118 -07 000000433 INF: FPGA: Recv ZSGSRD 30297
17-03-17 23:59:44.128 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:44.128 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:44.128 -07 000000480 INF: FPGA: Recv ZPIEZORD 26011
17-03-17 23:59:44.138 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:44.138 -07 000000429 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.498 V. Piezo Error = -9.4 V.
17-03-17 23:59:44.138 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30295 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30294 (-134.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30289 (-134.1 uncal um), Max = 30302 (-134.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:59:44.138 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30295, posNoise = 7, negNoise = 6
17-03-17 23:59:44.138 -07 000000429 INF: Z Motor: After move to -0.134937, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:44.138 -07 000000429 INF: Z Motor: Settle wait time = 1752 ms, measure time = 118 ms (allowed 150 ms), total time = 1870 ms
17-03-17 23:59:44.138 -07 000000429 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 23:59:44.178 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1912 ms
17-03-17 23:59:44.178 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:59:44.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:44.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:44.178 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:44.178 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:44.178 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:59:44.178 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:44.188 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:44.188 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:59:44.188 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:59:44.188 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:59:44.188 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:59:44.188 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:59:44.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:59:44.238 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:59:44.538 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:59:44.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:59:44.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:59:44.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-17 23:59:44.578 -07 000000482 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:59:44.578 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 23:59:44.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-17 23:59:44.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:59:44.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:44.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:59:44.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:59:44.678 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:44.678 -07 000000475 INF: Autofocus start
17-03-17 23:59:44.678 -07 000000475 INF: MeasureProfile start
17-03-17 23:59:44.678 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:44.688 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:59:44.688 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:59:44.688 -07 000000475 INF: MeasureProfile done
17-03-17 23:59:44.688 -07 000000475 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 23:59:44.688 -07 000000475 INF: Autofocus finished
17-03-17 23:59:44.728 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.011254,
17-03-17 23:59:44.888 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:59:44.888 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:59:44.888 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.134944858845783. ----------
17-03-17 23:59:44.888 -07 000000610 INF: Cycle	80	Tile	15	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:59:44.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27955, sync = True, waitForSettling = True)
17-03-17 23:59:44.898 -07 000000610 INF: Z Motor: Moving to -0.127970 mm, started at -0.134945 mm, distance = 6.98 um
17-03-17 23:59:44.898 -07 000000610 INF: FPGA: Xmit ZDACW 27955\n [Z Motor]
17-03-17 23:59:44.898 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 23:59:44.908 -07 000000610 INF: FPGA: 'ZDACW 27955' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:59:44.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:44.908 -07 000000576 INF: FPGA: Recv ZDACR 27955
17-03-17 23:59:44.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:44.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:59:45.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:45.068 -07 000000475 INF: FPGA: Recv ZSGSRD 29209
17-03-17 23:59:45.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:45.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:45.078 -07 000000433 INF: FPGA: Recv ZSGSRD 29206
17-03-17 23:59:45.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:45.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:45.088 -07 000000478 INF: FPGA: Recv ZSGSRD 29212
17-03-17 23:59:45.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:45.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:45.098 -07 000000459 INF: FPGA: Recv ZSGSRD 29204
17-03-17 23:59:45.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:45.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:45.108 -07 000000482 INF: FPGA: Recv ZSGSRD 29214
17-03-17 23:59:45.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:45.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:45.118 -07 000000475 INF: FPGA: Recv ZSGSRD 29207
17-03-17 23:59:45.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:45.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:45.128 -07 000000429 INF: FPGA: Recv ZSGSRD 29209
17-03-17 23:59:45.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:45.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:45.138 -07 000000433 INF: FPGA: Recv ZSGSRD 29208
17-03-17 23:59:45.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:45.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:45.148 -07 000000459 INF: FPGA: Recv ZSGSRD 29205
17-03-17 23:59:45.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:45.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:45.158 -07 000000480 INF: FPGA: Recv ZSGSRD 29214
17-03-17 23:59:45.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:45.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:45.168 -07 000000382 INF: FPGA: Recv ZPIEZORD 24559
17-03-17 23:59:45.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:45.178 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.266 V. Piezo Error = -10.2 V.
17-03-17 23:59:45.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29209 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29208 (-127.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29204 (-127.2 uncal um), Max = 29214 (-127.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:59:45.178 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29209, posNoise = 5, negNoise = 5
17-03-17 23:59:45.178 -07 000000610 INF: Z Motor: After move to -0.127970, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:45.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:59:45.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:45.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:45.178 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:45.178 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:45.178 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:59:45.178 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:45.178 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:59:45.178 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:59:45.178 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:59:45.178 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:59:45.178 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:59:45.178 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:59:45.188 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:59:45.188 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:59:45.188 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:59:45.188 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:59:45.198 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:59:45.198 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:59:45.198 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:59:45.198 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:59:45.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28131 150\n [Camera]
17-03-17 23:59:45.398 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:59:46.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:59:46.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:59:46.438 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:46.448 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:59:46.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:59:46.448 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:46.448 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:46.448 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 23:59:46.458 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:46.458 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 23:59:46.628 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28131 1422
17-03-17 23:59:46.778 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:59:46.848 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:59:46.848 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:59:46.848 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:46.848 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:46.848 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:59:46.848 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:59:46.848 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:59:46.848 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:46.858 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:46.858 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:59:47.118 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:59:47.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:59:47.278 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:59:47.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:59:47.288 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:47.288 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:47.288 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2466021592, 0x0, 391868352) start.
17-03-17 23:59:47.288 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:59:47.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:59:47.288 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:47.288 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:47.288 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2501443856, 0x0, 418435064) start.
17-03-17 23:59:47.478 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:59:47.478 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:59:47.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28131 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-17 23:59:47.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:59:47.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.127968164459831. ------
17-03-17 23:59:47.478 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:47.478 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13431 mm
17-03-17 23:59:47.478 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:59:47.478 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:47.488 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:59:47.488 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:59:47.488 -07 000000442 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:59:47.488 -07 000000442 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 23:59:47.488 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29339, sync = True, waitForSettling = False)
17-03-17 23:59:47.488 -07 000000382 INF: Z Motor: Moving to -0.134305 mm, started at -0.127968 mm, distance = -6.34 um
17-03-17 23:59:47.498 -07 000000382 INF: FPGA: Xmit ZDACW 29339\n [Z Motor]
17-03-17 23:59:47.498 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:59:47.508 -07 000000382 INF: FPGA: 'ZDACW 29339' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:59:47.508 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:47.508 -07 000000512 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:59:47.518 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 23:59:47.518 -07 000000442 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:47.518 -07 000000442 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:59:47.518 -07 000000442 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:59:47.518 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:47.518 -07 000000512 INF: FPGA: Recv ZDACR 29339
17-03-17 23:59:47.528 -07 000000382 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:59:47.528 -07 000000382 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 23:59:47.528 -07 000000442 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:59:47.688 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:59:47.688 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:59:47.688 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2466021592, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 23:59:47.688 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:59:47.688 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:47.688 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2501443856, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:59:47.688 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:59:47.688 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:47.698 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:47.698 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:59:47.698 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:59:47.698 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:59:47.898 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 23:59:47.898 -07 000000442 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:59:47.948 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:47.948 -07 000000627 INF: FPGA: Recv YRDPOS 148173
17-03-17 23:59:47.958 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:59:47.958 -07 000000442 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:47.958 -07 000000442 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 23:59:47.958 -07 000000442 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-17 23:59:48.908 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:48.908 -07 000000627 INF: FPGA: Recv YRDPOS 148173
17-03-17 23:59:48.918 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:48.918 -07 000000442 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:48.938 -07 000000442 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:59:48.938 -07 000000442 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:59:48.938 -07 000000442 INF: Y Motor: Moved to 72.3501 after 1456 ms (table move)
17-03-17 23:59:48.948 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134305 mm (DAC = 29339)
17-03-17 23:59:48.948 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:48.948 -07 000000627 INF: FPGA: Recv ZSGSRD 30193
17-03-17 23:59:48.958 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:59:48.958 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:48.958 -07 000000442 INF: FPGA: Recv ZSGSRD 30195
17-03-17 23:59:48.968 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:48.968 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:48.968 -07 000000627 INF: FPGA: Recv ZSGSRD 30192
17-03-17 23:59:48.978 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:48.978 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:48.978 -07 000000459 INF: FPGA: Recv ZSGSRD 30196
17-03-17 23:59:48.988 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:48.988 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:48.988 -07 000000627 INF: FPGA: Recv ZSGSRD 30203
17-03-17 23:59:48.998 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:48.998 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:48.998 -07 000000459 INF: FPGA: Recv ZSGSRD 30193
17-03-17 23:59:49.008 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:49.008 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:49.008 -07 000000627 INF: FPGA: Recv ZSGSRD 30197
17-03-17 23:59:49.018 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:49.018 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:49.018 -07 000000627 INF: FPGA: Recv ZSGSRD 30189
17-03-17 23:59:49.028 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:49.028 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:49.028 -07 000000627 INF: FPGA: Recv ZSGSRD 30194
17-03-17 23:59:49.038 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:49.038 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:49.038 -07 000000459 INF: FPGA: Recv ZSGSRD 30198
17-03-17 23:59:49.048 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:49.048 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:49.048 -07 000000627 INF: FPGA: Recv ZPIEZORD 25913
17-03-17 23:59:49.058 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:49.058 -07 000000409 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.477 V. Piezo Error = -9.4 V.
17-03-17 23:59:49.058 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30195 (-133.5 uncal um), Error = 0.8 uncal um, Median = 30194 (-133.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30189 (-133.5 uncal um), Max = 30203 (-133.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:59:49.058 -07 000000409 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30195, posNoise = 8, negNoise = 6
17-03-17 23:59:49.058 -07 000000409 INF: Z Motor: After move to -0.134305, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:49.058 -07 000000409 INF: Z Motor: Settle wait time = 1459 ms, measure time = 109 ms (allowed 150 ms), total time = 1568 ms
17-03-17 23:59:49.058 -07 000000409 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:59:49.108 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-17 23:59:49.108 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:59:49.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:49.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:49.108 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:49.108 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:59:49.108 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:49.108 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:49.108 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:59:49.108 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:59:49.118 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:59:49.118 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:59:49.128 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:59:49.128 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:59:49.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:59:49.178 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:59:49.478 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:59:49.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:59:49.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:59:49.588 -07 000000409 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:59:49.588 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 23:59:49.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 454 ms to get response, and 458 ms overall
17-03-17 23:59:49.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2536866120, 0x0, 559484976) start.
17-03-17 23:59:49.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2536866120, 0x0, 559484976) end. Duration was 129 ms.
17-03-17 23:59:49.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:49.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:59:49.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 243 ms.
17-03-17 23:59:49.788 -07 000000459 INF: Autofocus start
17-03-17 23:59:49.788 -07 000000459 INF: MeasureProfile start
17-03-17 23:59:49.798 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:49.798 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:49.798 -07 000000459 INF: MeasureProfile done
17-03-17 23:59:49.798 -07 000000459 INF: X=32  Z correction [um]=0.1299841
17-03-17 23:59:49.798 -07 000000459 INF: Autofocus finished
17-03-17 23:59:49.808 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:59:49.818 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:59:50.018 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:59:50.018 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 23:59:50.018 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.134302437631607. ----------
17-03-17 23:59:50.018 -07 000000610 INF: Cycle	80	Tile	16	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:59:50.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27880, sync = True, waitForSettling = True)
17-03-17 23:59:50.018 -07 000000610 INF: Z Motor: Moving to -0.127626 mm, started at -0.134302 mm, distance = 6.68 um
17-03-17 23:59:50.028 -07 000000610 INF: FPGA: Xmit ZDACW 27880\n [Z Motor]
17-03-17 23:59:50.028 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:59:50.038 -07 000000610 INF: FPGA: 'ZDACW 27880' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:50.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:50.038 -07 000000475 INF: FPGA: Recv ZDACR 27880
17-03-17 23:59:50.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:50.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:59:50.098 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.014009,
17-03-17 23:59:50.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:50.198 -07 000000475 INF: FPGA: Recv ZSGSRD 29156
17-03-17 23:59:50.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:50.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:50.208 -07 000000593 INF: FPGA: Recv ZSGSRD 29168
17-03-17 23:59:50.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:50.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:50.218 -07 000000475 INF: FPGA: Recv ZSGSRD 29160
17-03-17 23:59:50.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:50.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:50.228 -07 000000593 INF: FPGA: Recv ZSGSRD 29154
17-03-17 23:59:50.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:50.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:50.238 -07 000000627 INF: FPGA: Recv ZSGSRD 29154
17-03-17 23:59:50.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:50.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:50.248 -07 000000442 INF: FPGA: Recv ZSGSRD 29157
17-03-17 23:59:50.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:50.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:50.258 -07 000000627 INF: FPGA: Recv ZSGSRD 29158
17-03-17 23:59:50.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:50.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:50.268 -07 000000442 INF: FPGA: Recv ZSGSRD 29156
17-03-17 23:59:50.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:59:50.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:50.278 -07 000000475 INF: FPGA: Recv ZSGSRD 29155
17-03-17 23:59:50.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:50.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:50.288 -07 000000593 INF: FPGA: Recv ZSGSRD 29157
17-03-17 23:59:50.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:50.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:50.298 -07 000000442 INF: FPGA: Recv ZPIEZORD 24544
17-03-17 23:59:50.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:50.308 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.254 V. Piezo Error = -10.1 V.
17-03-17 23:59:50.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29158 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29156 (-126.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29154 (-126.8 uncal um), Max = 29168 (-126.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:59:50.308 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29158, posNoise = 10, negNoise = 4
17-03-17 23:59:50.308 -07 000000610 INF: Z Motor: After move to -0.127626, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:50.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:59:50.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:50.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:50.308 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:50.308 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:50.308 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:59:50.308 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:50.308 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:59:50.308 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:59:50.308 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:50.308 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:59:50.308 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:59:50.308 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:59:50.318 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:59:50.318 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:59:50.318 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:59:50.318 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:59:50.328 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:59:50.328 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:59:50.328 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:59:50.328 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:59:50.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28057 150\n [Camera]
17-03-17 23:59:50.538 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:59:51.568 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:59:51.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:59:51.568 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:51.578 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:59:51.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:59:51.578 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:51.578 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:51.578 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:59:51.578 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:51.578 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:59:51.768 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28057 1422
17-03-17 23:59:51.908 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:59:51.968 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 23:59:51.968 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:59:51.968 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:51.968 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:51.968 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:59:51.968 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:59:51.968 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:51.968 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:51.968 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:59:51.978 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:59:52.118 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:59:52.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:59:52.418 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:59:52.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:59:52.418 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:52.418 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:59:52.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:59:52.418 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:52.418 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:52.418 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:59:52.528 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:52.528 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 23:59:52.608 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:59:52.608 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:59:52.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28057 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:59:52.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:59:52.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.127640529640601. ------
17-03-17 23:59:52.608 -07 000000442 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:52.608 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13418 mm
17-03-17 23:59:52.608 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:59:52.618 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:52.618 -07 000000442 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:59:52.618 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:59:52.618 -07 000000459 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 23:59:52.618 -07 000000442 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:59:52.618 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 29311, sync = True, waitForSettling = False)
17-03-17 23:59:52.618 -07 000000409 INF: Z Motor: Moving to -0.134177 mm, started at -0.127641 mm, distance = -6.54 um
17-03-17 23:59:52.628 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:52.628 -07 000000627 INF: FPGA: Recv YRDPOS 148173
17-03-17 23:59:52.638 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:59:52.638 -07 000000459 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:52.638 -07 000000459 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:59:52.638 -07 000000459 INF: Y Motor: Moving 1348 steps-26
17-03-17 23:59:52.638 -07 000000409 INF: FPGA: Xmit ZDACW 29311\n [Z Motor]
17-03-17 23:59:52.638 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 23:59:52.648 -07 000000409 INF: FPGA: 'ZDACW 29311' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:59:52.648 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:52.648 -07 000000480 INF: FPGA: Recv ZDACR 29311
17-03-17 23:59:52.658 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:59:52.658 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:52.658 -07 000000409 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 23:59:52.808 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 23:59:52.808 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:59:52.808 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:52.818 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:52.818 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:59:52.818 -07 000000442 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 23:59:52.828 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:59:52.918 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:59:52.918 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:59:52.918 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:52.928 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:59:52.928 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 23:59:53.028 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 23:59:53.028 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:59:53.078 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:53.078 -07 000000433 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:59:53.088 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:59:53.088 -07 000000459 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:53.088 -07 000000459 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 23:59:53.088 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 23:59:54.038 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:54.038 -07 000000442 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:59:54.048 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:54.048 -07 000000459 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:54.068 -07 000000459 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:59:54.068 -07 000000459 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:59:54.068 -07 000000459 INF: Y Motor: Moved to 73.1763 after 1454 ms (table move)
17-03-17 23:59:54.078 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134177 mm (DAC = 29311)
17-03-17 23:59:54.078 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:54.078 -07 000000482 INF: FPGA: Recv ZSGSRD 30174
17-03-17 23:59:54.088 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:59:54.088 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:54.088 -07 000000623 INF: FPGA: Recv ZSGSRD 30174
17-03-17 23:59:54.098 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:54.098 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:54.098 -07 000000459 INF: FPGA: Recv ZSGSRD 30177
17-03-17 23:59:54.108 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:54.108 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:54.108 -07 000000442 INF: FPGA: Recv ZSGSRD 30180
17-03-17 23:59:54.118 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:54.118 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:54.118 -07 000000442 INF: FPGA: Recv ZSGSRD 30176
17-03-17 23:59:54.128 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:54.128 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:54.128 -07 000000442 INF: FPGA: Recv ZSGSRD 30176
17-03-17 23:59:54.138 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:54.138 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:54.138 -07 000000475 INF: FPGA: Recv ZSGSRD 30182
17-03-17 23:59:54.148 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:54.148 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:54.148 -07 000000475 INF: FPGA: Recv ZSGSRD 30176
17-03-17 23:59:54.158 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:54.158 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:54.158 -07 000000512 INF: FPGA: Recv ZSGSRD 30171
17-03-17 23:59:54.168 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:54.168 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:54.168 -07 000000512 INF: FPGA: Recv ZSGSRD 30173
17-03-17 23:59:54.178 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:54.178 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:54.178 -07 000000475 INF: FPGA: Recv ZPIEZORD 25889
17-03-17 23:59:54.188 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:54.188 -07 000000593 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.473 V. Piezo Error = -9.4 V.
17-03-17 23:59:54.188 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.2 um, Read 10 ADC samples: Avg = 30176 (-133.4 uncal um), Error = 0.8 uncal um, Median = 30176 (-133.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30171 (-133.4 uncal um), Max = 30182 (-133.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:59:54.188 -07 000000593 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30176, posNoise = 6, negNoise = 5
17-03-17 23:59:54.188 -07 000000593 INF: Z Motor: After move to -0.134177, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:54.188 -07 000000593 INF: Z Motor: Settle wait time = 1456 ms, measure time = 111 ms (allowed 150 ms), total time = 1567 ms
17-03-17 23:59:54.188 -07 000000593 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:59:54.228 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 23:59:54.228 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:59:54.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:54.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:54.228 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:54.228 -07 000000442 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:59:54.228 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:54.228 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:54.228 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:54.228 -07 000000442 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:59:54.238 -07 000000442 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:59:54.238 -07 000000442 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:59:54.248 -07 000000442 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 23:59:54.248 -07 000000442 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:59:54.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:59:54.288 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:59:54.588 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:59:54.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:59:54.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:59:54.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 23:59:54.628 -07 000000442 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:59:54.628 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 23:59:54.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-17 23:59:54.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:59:54.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:54.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:59:54.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:59:54.828 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:54.828 -07 000000512 INF: Autofocus start
17-03-17 23:59:54.828 -07 000000512 INF: MeasureProfile start
17-03-17 23:59:54.828 -07 000000442 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:54.838 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:59:54.838 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:59:54.838 -07 000000512 INF: MeasureProfile done
17-03-17 23:59:54.838 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:59:54.838 -07 000000512 INF: Autofocus finished
17-03-17 23:59:55.038 -07 000000442 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:59:55.038 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:59:55.038 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134180377600914. ----------
17-03-17 23:59:55.038 -07 000000610 INF: Cycle	80	Tile	17	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:59:55.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27818, sync = True, waitForSettling = True)
17-03-17 23:59:55.048 -07 000000610 INF: Z Motor: Moving to -0.127343 mm, started at -0.134180 mm, distance = 6.84 um
17-03-17 23:59:55.048 -07 000000610 INF: FPGA: Xmit ZDACW 27818\n [Z Motor]
17-03-17 23:59:55.048 -07 000000442 INF: FPGA: Recv ZDACW
17-03-17 23:59:55.058 -07 000000610 INF: FPGA: 'ZDACW 27818' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:59:55.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:55.058 -07 000000512 INF: FPGA: Recv ZDACR 27818
17-03-17 23:59:55.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:55.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:59:55.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:55.218 -07 000000593 INF: FPGA: Recv ZSGSRD 29104
17-03-17 23:59:55.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:55.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:55.228 -07 000000442 INF: FPGA: Recv ZSGSRD 29117
17-03-17 23:59:55.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:55.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:55.238 -07 000000442 INF: FPGA: Recv ZSGSRD 29117
17-03-17 23:59:55.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:55.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:55.248 -07 000000593 INF: FPGA: Recv ZSGSRD 29116
17-03-17 23:59:55.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:55.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:55.258 -07 000000512 INF: FPGA: Recv ZSGSRD 29108
17-03-17 23:59:55.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:55.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:55.268 -07 000000593 INF: FPGA: Recv ZSGSRD 29107
17-03-17 23:59:55.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:55.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:55.278 -07 000000512 INF: FPGA: Recv ZSGSRD 29118
17-03-17 23:59:55.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:55.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:55.288 -07 000000512 INF: FPGA: Recv ZSGSRD 29114
17-03-17 23:59:55.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:55.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:55.298 -07 000000442 INF: FPGA: Recv ZSGSRD 29111
17-03-17 23:59:55.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:55.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:55.308 -07 000000512 INF: FPGA: Recv ZSGSRD 29114
17-03-17 23:59:55.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:55.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:55.318 -07 000000442 INF: FPGA: Recv ZPIEZORD 24468
17-03-17 23:59:55.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:55.328 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.245 V. Piezo Error = -10.2 V.
17-03-17 23:59:55.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29113 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29114 (-126.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29104 (-126.5 uncal um), Max = 29118 (-126.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:59:55.328 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29113, posNoise = 5, negNoise = 9
17-03-17 23:59:55.328 -07 000000610 INF: Z Motor: After move to -0.127343, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:55.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:59:55.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:55.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:55.328 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:55.328 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:55.328 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:59:55.328 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:55.328 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:59:55.328 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:59:55.328 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:59:55.328 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:59:55.328 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:59:55.328 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:59:55.338 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:59:55.338 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:59:55.338 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:59:55.338 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:59:55.348 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:59:55.348 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:59:55.348 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:59:55.348 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:59:55.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 27995 150\n [Camera]
17-03-17 23:59:55.478 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.015368,
17-03-17 23:59:55.558 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:59:56.588 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-17 23:59:56.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-17 23:59:56.588 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:56.598 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-17 23:59:56.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-17 23:59:56.598 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:56.598 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:56.598 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:59:56.598 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:56.598 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2420328552, 0x0, 391868352) start.
17-03-17 23:59:56.788 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27995 1422
17-03-17 23:59:56.928 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-17 23:59:56.988 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2420328552, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:59:56.988 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:59:56.988 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:56.998 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:56.998 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:59:56.998 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:59:56.998 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:59:56.998 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:56.998 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:59:57.008 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:59:57.118 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:59:57.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-17 23:59:57.438 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-17 23:59:57.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-17 23:59:57.438 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:59:57.438 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-17 23:59:57.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-17 23:59:57.438 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:59:57.438 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:59:57.438 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:59:57.438 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:59:57.438 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:59:57.628 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-17 23:59:57.628 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:59:57.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 27995 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-17 23:59:57.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:59:57.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127351440094222. ------
17-03-17 23:59:57.628 -07 000000442 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:57.628 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13368 mm
17-03-17 23:59:57.628 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:59:57.638 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:57.638 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:59:57.638 -07 000000442 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 23:59:57.638 -07 000000618 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 23:59:57.638 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:57.638 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29203, sync = True, waitForSettling = False)
17-03-17 23:59:57.638 -07 000000486 INF: Z Motor: Moving to -0.133683 mm, started at -0.127351 mm, distance = -6.33 um
17-03-17 23:59:57.638 -07 000000482 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:59:57.648 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:59:57.648 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:57.648 -07 000000618 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:59:57.648 -07 000000618 INF: Y Motor: Moving 1354 steps-33
17-03-17 23:59:57.648 -07 000000442 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:59:57.658 -07 000000486 INF: FPGA: Xmit ZDACW 29203\n [Z Motor]
17-03-17 23:59:57.658 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:59:57.668 -07 000000486 INF: FPGA: 'ZDACW 29203' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:59:57.668 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:59:57.678 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:57.678 -07 000000478 INF: FPGA: Recv ZDACR 29203
17-03-17 23:59:57.688 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:59:57.688 -07 000000486 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 23:59:57.838 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 23:59:57.838 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:59:57.838 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:57.838 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:59:57.838 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:59:57.838 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:57.848 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:57.848 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:59:57.848 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:59:57.848 -07 000000442 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 23:59:57.848 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:59:57.858 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 23:59:58.038 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 23:59:58.038 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:59:58.078 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:58.078 -07 000000433 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:59:58.088 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:59:58.088 -07 000000618 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:58.088 -07 000000618 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:59:58.088 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-17 23:59:59.038 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:59:59.038 -07 000000478 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:59:59.048 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:59.048 -07 000000618 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:59:59.068 -07 000000618 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:59:59.068 -07 000000618 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:59:59.068 -07 000000618 INF: Y Motor: Moved to 74.0083 after 1426 ms (table move)
17-03-17 23:59:59.068 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133683 mm (DAC = 29203)
17-03-17 23:59:59.068 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:59.068 -07 000000512 INF: FPGA: Recv ZSGSRD 30103
17-03-17 23:59:59.078 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:59:59.078 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:59.078 -07 000000627 INF: FPGA: Recv ZSGSRD 30097
17-03-17 23:59:59.088 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:59.088 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:59.088 -07 000000482 INF: FPGA: Recv ZSGSRD 30094
17-03-17 23:59:59.098 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:59.098 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:59.098 -07 000000442 INF: FPGA: Recv ZSGSRD 30101
17-03-17 23:59:59.108 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:59.108 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:59.108 -07 000000382 INF: FPGA: Recv ZSGSRD 30108
17-03-17 23:59:59.118 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:59.118 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:59.118 -07 000000433 INF: FPGA: Recv ZSGSRD 30104
17-03-17 23:59:59.128 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:59.128 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:59.128 -07 000000576 INF: FPGA: Recv ZSGSRD 30096
17-03-17 23:59:59.138 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:59.138 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:59.138 -07 000000623 INF: FPGA: Recv ZSGSRD 30097
17-03-17 23:59:59.148 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:59.148 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:59.148 -07 000000618 INF: FPGA: Recv ZSGSRD 30102
17-03-17 23:59:59.158 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:59.158 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:59:59.158 -07 000000618 INF: FPGA: Recv ZSGSRD 30094
17-03-17 23:59:59.168 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:59.168 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:59:59.168 -07 000000618 INF: FPGA: Recv ZPIEZORD 25838
17-03-17 23:59:59.178 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:59.178 -07 000000462 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.456 V. Piezo Error = -9.4 V.
17-03-17 23:59:59.178 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30100 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30099 (-132.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30094 (-132.9 uncal um), Max = 30108 (-133.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:59:59.178 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30100, posNoise = 8, negNoise = 6
17-03-17 23:59:59.178 -07 000000462 INF: Z Motor: After move to -0.133683, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:59:59.178 -07 000000462 INF: Z Motor: Settle wait time = 1430 ms, measure time = 105 ms (allowed 150 ms), total time = 1535 ms
17-03-17 23:59:59.178 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 23:59:59.228 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 23:59:59.228 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:59:59.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:59:59.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:59:59.228 -07 000000442 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:59:59.228 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:59:59.228 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:59:59.228 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:59:59.228 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:59:59.228 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:59:59.238 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:59:59.238 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:59:59.238 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:59:59.238 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:59:59.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-17 23:59:59.288 -07 000000442 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:59:59.588 -07 000000442 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-17 23:59:59.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-17 23:59:59.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:59:59.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2472625880, 0x0, 559484976) start.
17-03-17 23:59:59.628 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-17 23:59:59.628 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 23:59:59.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-17 23:59:59.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2472625880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:59:59.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:59:59.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:59:59.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:59:59.728 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:59:59.728 -07 000000442 INF: Autofocus start
17-03-17 23:59:59.728 -07 000000442 INF: MeasureProfile start
17-03-17 23:59:59.728 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:59:59.738 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:59:59.738 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:59:59.748 -07 000000442 INF: MeasureProfile done
17-03-17 23:59:59.748 -07 000000442 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:59:59.748 -07 000000442 INF: Autofocus finished
17-03-17 23:59:59.938 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:59:59.938 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:59:59.938 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.13369213747814. ----------
17-03-17 23:59:59.938 -07 000000610 INF: Cycle	80	Tile	18	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-17 23:59:59.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27710, sync = True, waitForSettling = True)
17-03-17 23:59:59.948 -07 000000610 INF: Z Motor: Moving to -0.126848 mm, started at -0.133692 mm, distance = 6.84 um
17-03-17 23:59:59.948 -07 000000610 INF: FPGA: Xmit ZDACW 27710\n [Z Motor]
17-03-17 23:59:59.948 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:59:59.958 -07 000000610 INF: FPGA: 'ZDACW 27710' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:59:59.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:59:59.958 -07 000000442 INF: FPGA: Recv ZDACR 27710
17-03-17 23:59:59.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:59:59.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:00:00.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:00.118 -07 000000442 INF: FPGA: Recv ZSGSRD 29031
17-03-18 00:00:00.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:00.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:00.128 -07 000000442 INF: FPGA: Recv ZSGSRD 29038
17-03-18 00:00:00.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:00.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:00.138 -07 000000462 INF: FPGA: Recv ZSGSRD 29035
17-03-18 00:00:00.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:00.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:00.148 -07 000000442 INF: FPGA: Recv ZSGSRD 29033
17-03-18 00:00:00.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:00.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:00.158 -07 000000462 INF: FPGA: Recv ZSGSRD 29038
17-03-18 00:00:00.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:00.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:00.168 -07 000000618 INF: FPGA: Recv ZSGSRD 29040
17-03-18 00:00:00.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:00.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:00.178 -07 000000618 INF: FPGA: Recv ZSGSRD 29037
17-03-18 00:00:00.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:00.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:00.188 -07 000000462 INF: FPGA: Recv ZSGSRD 29036
17-03-18 00:00:00.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:00.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:00.198 -07 000000462 INF: FPGA: Recv ZSGSRD 29033
17-03-18 00:00:00.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:00.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:00.218 -07 000000459 INF: FPGA: Recv ZSGSRD 29038
17-03-18 00:00:00.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:00:00.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:00:00.228 -07 000000462 INF: FPGA: Recv ZPIEZORD 24439
17-03-18 00:00:00.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:00.238 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.228 V. Piezo Error = -10.1 V.
17-03-18 00:00:00.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.8 um, Read 10 ADC samples: Avg = 29036 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29036 (-126.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29031 (-126.1 uncal um), Max = 29040 (-126.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 00:00:00.238 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29036, posNoise = 4, negNoise = 5
17-03-18 00:00:00.238 -07 000000610 INF: Z Motor: After move to -0.126848, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:00:00.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 00:00:00.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:00:00.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:00:00.238 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:00:00.238 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:00:00.238 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:00:00.238 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:00:00.238 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:00:00.238 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:00:00.238 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:00:00.238 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:00:00.238 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:00:00.238 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:00:00.248 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:00:00.248 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:00:00.248 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 00:00:00.248 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:00:00.258 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 00:00:00.258 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 00:00:00.258 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 00:00:00.258 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 00:00:00.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 27887 150\n [Camera]
17-03-18 00:00:00.458 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:00:00.848 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.004458,
17-03-18 00:00:01.498 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:00:01.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:00:01.498 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:00:01.498 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:00:01.498 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 00:00:01.498 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:00:01.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:00:01.498 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:00:01.498 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:00:01.498 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 00:00:01.688 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27887 1422
17-03-18 00:00:01.838 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:00:01.898 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 00:00:01.898 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 00:00:01.898 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:00:01.898 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 00:00:01.898 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 00:00:01.898 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:00:01.908 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:00:01.908 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 00:00:01.908 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:00:01.908 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 00:00:02.118 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:00:02.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-18 00:00:02.338 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:00:02.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:00:02.338 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:00:02.338 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:00:02.338 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 00:00:02.338 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:00:02.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:00:02.348 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:00:02.348 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:00:02.348 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 00:00:02.528 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-18 00:00:02.528 -07 000000442 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:00:02.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 27887 150' command took 2 ms to send, 2268 ms to get response, and 2272 ms overall
17-03-18 00:00:02.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:00:02.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.126856775759306. ------
17-03-18 00:00:02.538 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:00:02.538 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13299 mm
17-03-18 00:00:02.538 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:00:02.538 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 00:00:02.538 -07 000000459 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 00:00:02.538 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:00:02.538 -07 000000442 INF: Z Motor: Entering MoveAbsStepped (DAC = 29051, sync = True, waitForSettling = False)
17-03-18 00:00:02.538 -07 000000442 INF: Z Motor: Moving to -0.132987 mm, started at -0.126857 mm, distance = -6.13 um
17-03-18 00:00:02.548 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:00:02.548 -07 000000442 INF: FPGA: Xmit ZDACW 29051\n [Z Motor]
17-03-18 00:00:02.548 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 00:00:02.558 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:00:02.558 -07 000000442 INF: FPGA: 'ZDACW 29051' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:00:02.558 -07 000000576 INF: FPGA: Recv YRDPOS 151569
17-03-18 00:00:02.568 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 00:00:02.568 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:00:02.568 -07 000000459 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:00:02.568 -07 000000459 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:00:02.568 -07 000000459 INF: Y Motor: Moving 1351 steps-29
17-03-18 00:00:02.578 -07 000000442 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:00:02.578 -07 000000576 INF: FPGA: Recv ZDACR 29051
17-03-18 00:00:02.588 -07 000000442 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:00:02.588 -07 000000442 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 00:00:02.588 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:00:02.748 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 00:00:02.748 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 00:00:02.748 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:00:02.748 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 00:00:02.748 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 00:00:02.748 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:00:02.748 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:00:02.748 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 00:00:02.748 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 00:00:02.758 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 00:00:02.768 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:00:02.768 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 00:00:02.958 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-18 00:00:02.958 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 00:00:02.988 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:00:02.988 -07 000000433 INF: FPGA: Recv YRDPOS 153255
17-03-18 00:00:02.998 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:00:02.998 -07 000000459 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:00:02.998 -07 000000459 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 00:00:02.998 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 00:00:03.948 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:00:03.948 -07 000000627 INF: FPGA: Recv YRDPOS 153256
17-03-18 00:00:03.958 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:03.958 -07 000000459 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:00:03.968 -07 000000459 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:00:03.968 -07 000000459 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 00:00:03.968 -07 000000459 INF: Y Motor: Moved to 74.8320 after 1430 ms (table move)
17-03-18 00:00:03.978 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132987 mm (DAC = 29051)
17-03-18 00:00:03.978 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:03.978 -07 000000482 INF: FPGA: Recv ZSGSRD 29999
17-03-18 00:00:03.988 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:00:03.988 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:03.988 -07 000000475 INF: FPGA: Recv ZSGSRD 29997
17-03-18 00:00:03.998 -07 000000593 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:03.998 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:03.998 -07 000000475 INF: FPGA: Recv ZSGSRD 29988
17-03-18 00:00:04.008 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:04.008 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:04.008 -07 000000462 INF: FPGA: Recv ZSGSRD 29994
17-03-18 00:00:04.018 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:04.018 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:04.018 -07 000000482 INF: FPGA: Recv ZSGSRD 29989
17-03-18 00:00:04.028 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:04.028 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:04.028 -07 000000462 INF: FPGA: Recv ZSGSRD 29992
17-03-18 00:00:04.038 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:04.038 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:04.038 -07 000000462 INF: FPGA: Recv ZSGSRD 29999
17-03-18 00:00:04.048 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:04.048 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:04.048 -07 000000482 INF: FPGA: Recv ZSGSRD 29984
17-03-18 00:00:04.058 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:04.058 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:04.058 -07 000000475 INF: FPGA: Recv ZSGSRD 29984
17-03-18 00:00:04.068 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:04.068 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:04.068 -07 000000482 INF: FPGA: Recv ZSGSRD 29983
17-03-18 00:00:04.078 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:04.078 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:00:04.078 -07 000000442 INF: FPGA: Recv ZPIEZORD 25713
17-03-18 00:00:04.088 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:04.088 -07 000000593 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.433 V. Piezo Error = -9.4 V.
17-03-18 00:00:04.088 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29991 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29990 (-132.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29983 (-132.2 uncal um), Max = 29999 (-132.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 00:00:04.088 -07 000000593 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29991, posNoise = 8, negNoise = 8
17-03-18 00:00:04.088 -07 000000593 INF: Z Motor: After move to -0.132987, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:00:04.088 -07 000000593 INF: Z Motor: Settle wait time = 1432 ms, measure time = 108 ms (allowed 150 ms), total time = 1540 ms
17-03-18 00:00:04.088 -07 000000593 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 00:00:04.138 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 00:00:04.138 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:00:04.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:00:04.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:00:04.138 -07 000000442 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:00:04.138 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:00:04.148 -07 000000442 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:00:04.148 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:00:04.148 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:00:04.148 -07 000000442 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:00:04.148 -07 000000442 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:00:04.148 -07 000000442 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:00:04.158 -07 000000442 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 00:00:04.158 -07 000000442 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 00:00:04.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:00:04.198 -07 000000442 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:00:04.498 -07 000000442 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:00:04.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:00:04.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:00:04.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) start.
17-03-18 00:00:04.538 -07 000000593 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:00:04.538 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-18 00:00:04.538 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 00:00:04.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 00:00:04.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:00:04.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 00:00:04.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 00:00:04.638 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:00:04.638 -07 000000442 INF: Autofocus start
17-03-18 00:00:04.638 -07 000000442 INF: MeasureProfile start
17-03-18 00:00:04.658 -07 000000442 INF: MeasureProfile done
17-03-18 00:00:04.658 -07 000000442 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 00:00:04.658 -07 000000442 INF: Autofocus finished
17-03-18 00:00:04.658 -07 000000442 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:00:04.658 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 16 ms to get response, and 20 ms overall
17-03-18 00:00:04.658 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:00:04.858 -07 000000442 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:00:04.858 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-18 00:00:04.868 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.132991898354688. ----------
17-03-18 00:00:04.868 -07 000000610 INF: Cycle	80	Tile	19	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:00:04.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27529, sync = True, waitForSettling = True)
17-03-18 00:00:04.868 -07 000000610 INF: Z Motor: Moving to -0.126020 mm, started at -0.132992 mm, distance = 6.97 um
17-03-18 00:00:04.868 -07 000000610 INF: FPGA: Xmit ZDACW 27529\n [Z Motor]
17-03-18 00:00:04.878 -07 000000593 INF: FPGA: Recv ZDACW
17-03-18 00:00:04.878 -07 000000610 INF: FPGA: 'ZDACW 27529' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 00:00:04.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:00:04.878 -07 000000442 INF: FPGA: Recv ZDACR 27529
17-03-18 00:00:04.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:00:04.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:00:05.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:05.038 -07 000000593 INF: FPGA: Recv ZSGSRD 28903
17-03-18 00:00:05.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:05.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:05.048 -07 000000593 INF: FPGA: Recv ZSGSRD 28903
17-03-18 00:00:05.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:05.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:05.058 -07 000000593 INF: FPGA: Recv ZSGSRD 28907
17-03-18 00:00:05.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:05.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:05.068 -07 000000593 INF: FPGA: Recv ZSGSRD 28907
17-03-18 00:00:05.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:05.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:05.078 -07 000000442 INF: FPGA: Recv ZSGSRD 28906
17-03-18 00:00:05.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:05.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:05.088 -07 000000442 INF: FPGA: Recv ZSGSRD 28908
17-03-18 00:00:05.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:05.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:05.098 -07 000000593 INF: FPGA: Recv ZSGSRD 28909
17-03-18 00:00:05.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:05.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:05.108 -07 000000593 INF: FPGA: Recv ZSGSRD 28905
17-03-18 00:00:05.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:05.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:05.118 -07 000000593 INF: FPGA: Recv ZSGSRD 28901
17-03-18 00:00:05.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:05.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:00:05.128 -07 000000593 INF: FPGA: Recv ZSGSRD 28906
17-03-18 00:00:05.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:05.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:00:05.138 -07 000000442 INF: FPGA: Recv ZPIEZORD 24266
17-03-18 00:00:05.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:05.148 -07 000000610 INF: Z Motor: Piezo is near 31.8 V (nominally 0 to 100 V), expect near 42.0 V, since DAC is at 4.201 V. Piezo Error = -10.2 V.
17-03-18 00:00:05.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.0 um, Read 10 ADC samples: Avg = 28906 (-125.3 uncal um), Error = 0.8 uncal um, Median = 28906 (-125.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 28901 (-125.2 uncal um), Max = 28909 (-125.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 00:00:05.148 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28906, posNoise = 3, negNoise = 5
17-03-18 00:00:05.148 -07 000000610 INF: Z Motor: After move to -0.126020, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:00:05.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 00:00:05.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:00:05.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:00:05.148 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:00:05.148 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:00:05.148 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:00:05.148 -07 000000442 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:00:05.148 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:00:05.148 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:00:05.148 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:00:05.148 -07 000000442 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:00:05.148 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:00:05.148 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:00:05.158 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 00:00:05.158 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:00:05.158 -07 000000442 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:00:05.158 -07 000000442 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:00:05.168 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 00:00:05.168 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 00:00:05.168 -07 000000442 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 00:00:05.168 -07 000000442 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 00:00:05.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 27706 150\n [Camera]
17-03-18 00:00:05.368 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:00:06.228 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.016692,
17-03-18 00:00:06.408 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:00:06.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:00:06.408 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:00:06.408 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:00:06.408 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 00:00:06.418 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:00:06.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:00:06.418 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:00:06.418 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:00:06.418 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 00:00:06.608 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27706 1422
17-03-18 00:00:06.758 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:00:06.808 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 00:00:06.808 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 00:00:06.808 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:00:06.818 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:00:06.818 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 00:00:06.818 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 00:00:06.818 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 00:00:06.818 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:00:06.818 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:00:06.828 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 00:00:07.118 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:00:07.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 79. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-18 00:00:07.258 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:00:07.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:00:07.258 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:00:07.258 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:00:07.258 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 00:00:07.258 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:00:07.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:00:07.258 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:00:07.258 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:00:07.258 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 00:00:07.448 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-18 00:00:07.448 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:00:07.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 27706 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-18 00:00:07.658 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 00:00:07.658 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 00:00:07.658 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:00:07.658 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 00:00:07.658 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 00:00:07.658 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:00:07.668 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:00:07.668 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 00:00:07.668 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 00:00:07.668 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 00:00:07.668 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 00:00:07.708 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 00:00:07.708 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 00:00:07.758 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 00:00:07.768 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 00:00:07.768 -07 000000610 INF: Imaging Cycle 80: ScanTilesCommand Cycle 80 time end. Duration was 210333 ms.
17-03-18 00:00:07.768 -07 000000610 INF: =================== Cycle #80 ===================
17-03-18 00:00:07.768 -07 000000610 INF: ===================  ===================
17-03-18 00:00:07.768 -07 000000459 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 00:00:07.768 -07 000000486 INF: FPGA: Recv EXLED1ADCR 24
17-03-18 00:00:07.778 -07 000000459 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:00:07.778 -07 000000459 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-18 00:00:07.778 -07 000000459 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 80, FrontChillerTemperature: 4.016692, FrontChillerHeatSinkTemperature: 0.330522, AmbientTemperature: 18.53434, FlowCellCompartmentTemperature: 21.98965, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.09243, GreenLEDSensorTemperature: 30.35114, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-18 00:00:07.828 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.