17-03-18 00:00:07.888 -07 000000610 INF: =================== Cycle #81 ===================
17-03-18 00:00:07.888 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 00:00:07.888 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 00:00:07.888 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:00:07.888 -07 000000623 INF: FPGA: Recv YRDPOS 153256
17-03-18 00:00:07.898 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:00:07.898 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:00:07.898 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 00:00:07.898 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 00:00:07.898 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 00:00:08.008 -07 000000459 INF: FPGA: Recv YMVTO 154377 871
17-03-18 00:00:08.008 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 116 ms overall
17-03-18 00:00:08.008 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-18 00:00:08.008 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 00:00:08.008 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.729 mm/sec
17-03-18 00:00:11.008 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:00:11.008 -07 000000409 INF: FPGA: Recv YRDPOS 154380
17-03-18 00:00:11.018 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:00:11.018 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:00:11.038 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:00:11.038 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-18 00:00:11.038 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3150 ms
17-03-18 00:00:11.038 -07 000000610 INF: =================== Cycle #81, Flow Cell Temp 60° ===================
17-03-18 00:00:11.038 -07 000000610 INF: =================== Cycle #81, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 00:00:11.318 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 00:00:11.318 -07 000000429 INF: FPGA: Recv TEC2EN 
17-03-18 00:00:11.328 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:11.328 -07 000000610 INF: =================== Cycle #81, Flow Cell Temp 60° ===================
17-03-18 00:00:11.328 -07 000000610 INF: =================== Cycle #81 ===================
17-03-18 00:00:11.328 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 00:00:11.328 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:00:11.358 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 00:00:11.358 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 00:00:11.358 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 00:00:11.588 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.989471,
17-03-18 00:00:11.658 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 00:00:11.678 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 00:00:11.678 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 00:00:11.728 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:00:11.748 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 00:00:11.748 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 00:00:11.848 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3) ===================
17-03-18 00:00:11.848 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 00:00:11.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:12.008 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 00:00:12.008 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 00:00:12.008 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 00:00:12.118 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:00:12.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1291, R2=1342, Total=2633. Warn if over 250 bubbles per interval.
17-03-18 00:00:12.138 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 00:00:12.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:15.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:15.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:15.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:15.788 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:16.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:16.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:16.238 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 00:00:16.238 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3) ===================
17-03-18 00:00:16.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:16.398 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 00:00:16.398 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 00:00:16.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:16.558 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 00:00:16.558 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 00:00:16.558 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 00:00:16.688 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 00:00:16.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:16.968 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.000345,
17-03-18 00:00:17.118 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-18 00:00:17.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1294, R2=1344, Total=2638. Warn if over 250 bubbles per interval.
17-03-18 00:00:17.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:17.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:17.178 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 00:00:17.178 -07 000000610 INF: =================== Cycle #81 ===================
17-03-18 00:00:18.398 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 00:00:18.398 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 00:00:18.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:00:18.418 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 00:00:18.418 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 00:00:18.418 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 00:00:18.558 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 00:00:18.578 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 00:00:18.578 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 00:00:18.628 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:00:18.648 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 00:00:18.648 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 00:00:18.748 -07 000000610 INF: =================== Cycle #81, Pumping Reagent CMS (4) ===================
17-03-18 00:00:18.748 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 00:00:18.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:18.778 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 00:00:18.778 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 00:00:18.778 -07 000000610 INF: =================== Cycle #81, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 00:00:18.908 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 00:00:18.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:20.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:20.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:20.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:20.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:20.868 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 00:00:20.868 -07 000000610 INF: =================== Cycle #81, Pumping Reagent CMS (4) ===================
17-03-18 00:00:20.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:21.028 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 00:00:21.028 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 00:00:21.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:21.188 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 00:00:21.188 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 00:00:21.188 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 00:00:21.318 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 00:00:21.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:21.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:21.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:21.808 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 00:00:21.808 -07 000000610 INF: =================== Cycle #81 ===================
17-03-18 00:00:22.118 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-18 00:00:22.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:00:22.328 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.02213,
17-03-18 00:00:23.028 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 00:00:23.028 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 00:00:23.028 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:00:23.048 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 00:00:23.048 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 00:00:23.048 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 00:00:23.198 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 00:00:23.218 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 00:00:23.218 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 00:00:23.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:00:23.288 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 00:00:23.288 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 00:00:23.388 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3) ===================
17-03-18 00:00:23.388 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 00:00:23.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:23.418 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 00:00:23.418 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 00:00:23.418 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 00:00:23.548 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 00:00:23.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:24.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:24.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:24.488 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 00:00:24.488 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3) ===================
17-03-18 00:00:24.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:25.668 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 00:00:25.668 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 00:00:25.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:25.828 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 00:00:25.828 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 00:00:25.828 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 00:00:25.958 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 00:00:25.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:26.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:26.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:26.448 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 00:00:26.448 -07 000000610 INF: =================== Cycle #81 ===================
17-03-18 00:00:26.448 -07 000000618 INF: WaitCommand(10000) start
17-03-18 00:00:26.448 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 00:00:26.448 -07 000000480 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 00:00:27.118 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:00:27.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:00:27.668 -07 000000480 INF: AsyncDelayTimer waited 1216ms
17-03-18 00:00:27.668 -07 000000480 INF: LanePump: Xmit /1?\r
17-03-18 00:00:27.698 -07 000000480 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 00:00:27.698 -07 000000480 INF: LanePump: Current Position of Pump is: 1110
17-03-18 00:00:27.698 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.02213,
17-03-18 00:00:27.828 -07 000000480 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 00:00:27.868 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:29.398 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:29.428 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:29.848 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:29.878 -07 000000480 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:29.878 -07 000000480 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 00:00:29.878 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 00:00:29.878 -07 000000480 INF: ===================  ===================
17-03-18 00:00:32.118 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:00:32.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:00:33.078 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.993549,
17-03-18 00:00:36.458 -07 000000618 INF: WaitCommand(10000) end
17-03-18 00:00:36.458 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3) ===================
17-03-18 00:00:36.458 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 00:00:36.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:36.498 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 00:00:36.498 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 00:00:36.498 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 00:00:36.628 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 00:00:36.668 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:37.118 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:00:37.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:00:38.438 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.974486,
17-03-18 00:00:42.118 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:00:42.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:00:42.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:42.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:43.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:43.278 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:43.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:43.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:43.808 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.945808,
17-03-18 00:00:44.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:44.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:44.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:44.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:44.628 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 00:00:44.628 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3) ===================
17-03-18 00:00:44.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:44.788 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 00:00:44.788 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 00:00:44.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:44.948 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 00:00:44.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 00:00:44.948 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 00:00:45.078 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 00:00:45.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:45.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:45.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:45.568 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 00:00:45.568 -07 000000610 INF: =================== Cycle #81 ===================
17-03-18 00:00:46.788 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 00:00:46.788 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 00:00:46.788 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:00:46.808 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 00:00:46.808 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 00:00:46.808 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 00:00:47.018 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 00:00:47.038 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 00:00:47.038 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 00:00:47.088 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:00:47.108 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 00:00:47.108 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 00:00:47.118 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:00:47.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:00:47.208 -07 000000610 INF: =================== Cycle #81, Pumping Reagent IMT (1) ===================
17-03-18 00:00:47.208 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 00:00:47.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:47.238 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 00:00:47.238 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 00:00:47.238 -07 000000610 INF: =================== Cycle #81, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 00:00:47.368 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 00:00:47.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:48.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:48.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:49.188 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.009895,
17-03-18 00:00:49.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:49.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:49.328 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 00:00:49.328 -07 000000610 INF: =================== Cycle #81, Pumping Reagent IMT (1) ===================
17-03-18 00:00:49.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:49.488 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 00:00:49.488 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 00:00:49.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:49.648 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 00:00:49.648 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 00:00:49.648 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 00:00:49.778 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 00:00:49.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:50.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:50.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:50.268 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 00:00:50.268 -07 000000610 INF: =================== Cycle #81 ===================
17-03-18 00:00:51.488 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 00:00:51.488 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 00:00:51.488 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:00:51.508 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 00:00:51.508 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 00:00:51.508 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 00:00:51.738 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 00:00:51.758 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 00:00:51.758 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 00:00:51.808 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:00:51.828 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 00:00:51.828 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 00:00:51.928 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3) ===================
17-03-18 00:00:51.928 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 00:00:51.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:51.958 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 00:00:51.958 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 00:00:51.958 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 00:00:52.088 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 00:00:52.118 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:00:52.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:00:52.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:00:52.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:53.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:53.028 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 00:00:53.028 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3) ===================
17-03-18 00:00:53.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:53.188 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 00:00:53.188 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 00:00:53.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:00:53.348 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 00:00:53.348 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 00:00:53.348 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 00:00:53.478 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 00:00:53.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:53.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:00:53.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:00:53.968 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 00:00:53.968 -07 000000610 INF: =================== Cycle #81 ===================
17-03-18 00:00:53.968 -07 000000610 INF: =================== Cycle #81, Flow Cell Temp 65° ===================
17-03-18 00:00:53.968 -07 000000610 INF: =================== Cycle #81, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 00:00:54.278 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 00:00:54.278 -07 000000429 INF: FPGA: Recv TEC2EN 
17-03-18 00:00:54.288 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:00:54.288 -07 000000610 INF: =================== Cycle #81, Flow Cell Temp 65° ===================
17-03-18 00:00:54.288 -07 000000610 INF: =================== Cycle #81 ===================
17-03-18 00:00:54.288 -07 000000610 INF: WaitCommand(30000) start
17-03-18 00:00:54.548 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.009895,
17-03-18 00:00:57.118 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:00:57.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:00:59.928 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.007176,
17-03-18 00:01:02.118 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:01:02.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:01:06.028 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.011254,
17-03-18 00:01:07.118 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:01:07.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:01:11.388 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.98264,
17-03-18 00:01:12.128 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:01:12.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:01:16.768 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.951279,
17-03-18 00:01:17.128 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:01:17.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:01:22.128 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.96762,
17-03-18 00:01:22.128 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:01:22.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:01:24.298 -07 000000610 INF: WaitCommand(30000) end
17-03-18 00:01:24.298 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3) ===================
17-03-18 00:01:24.298 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 00:01:24.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:01:24.328 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 00:01:24.328 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 00:01:24.328 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 00:01:24.458 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 00:01:24.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:01:25.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:01:25.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:01:25.068 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 00:01:25.068 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3) ===================
17-03-18 00:01:25.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:01:25.228 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 00:01:25.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 00:01:25.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:01:25.388 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 00:01:25.388 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 00:01:25.388 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 00:01:25.518 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 00:01:25.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:01:25.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:01:26.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:01:26.008 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 00:01:26.008 -07 000000610 INF: =================== Cycle #81 ===================
17-03-18 00:01:26.008 -07 000000415 INF: WaitCommand(30000) start
17-03-18 00:01:26.008 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 00:01:26.008 -07 000000618 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 00:01:27.128 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:01:27.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:01:27.228 -07 000000618 INF: AsyncDelayTimer waited 1216ms
17-03-18 00:01:27.228 -07 000000618 INF: LanePump: Xmit /1?\r
17-03-18 00:01:27.898 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.974486,
17-03-18 00:01:27.908 -07 000000618 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 00:01:27.908 -07 000000618 INF: LanePump: Current Position of Pump is: 1920
17-03-18 00:01:28.038 -07 000000618 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 00:01:28.078 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:01:30.418 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-18 00:01:30.448 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:01:30.868 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-18 00:01:30.898 -07 000000618 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:01:30.898 -07 000000618 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 00:01:30.898 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 00:01:30.898 -07 000000618 INF: ===================  ===================
17-03-18 00:01:32.128 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:01:32.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:01:33.548 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.023489,
17-03-18 00:01:37.128 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:01:37.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:01:38.918 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.014009,
17-03-18 00:01:42.128 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:01:42.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:01:44.298 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.018051,
17-03-18 00:01:47.128 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:01:47.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:01:49.658 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.023489,
17-03-18 00:01:52.128 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:01:52.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:01:55.028 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.037119,
17-03-18 00:01:56.018 -07 000000415 INF: WaitCommand(30000) end
17-03-18 00:01:56.018 -07 000000610 INF: =================== Cycle #81, Flow Cell Temp 22° ===================
17-03-18 00:01:56.018 -07 000000610 INF: =================== Cycle #81, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 00:01:56.018 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 00:01:56.028 -07 000000547 INF: FPGA: Recv TEC2TEMP 
17-03-18 00:01:56.028 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 00:01:56.028 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 00:01:56.028 -07 000000576 INF: FPGA: Recv TEC2EN 
17-03-18 00:01:56.038 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:01:56.038 -07 000000610 INF: =================== Cycle #81, Flow Cell Temp 22° ===================
17-03-18 00:01:56.038 -07 000000610 INF: =================== Cycle #81 ===================
17-03-18 00:01:56.038 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3) ===================
17-03-18 00:01:56.038 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 00:01:56.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:01:56.068 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 00:01:56.068 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 00:01:56.068 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 00:01:56.198 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 00:01:56.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:01:57.128 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:01:57.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1295, R2=1346, Total=2641. Warn if over 250 bubbles per interval.
17-03-18 00:01:59.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:01:59.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:01:59.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:01:59.848 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:02:00.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:02:00.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:02:00.298 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 00:02:00.298 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3) ===================
17-03-18 00:02:00.408 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.999021,
17-03-18 00:02:00.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:02:01.148 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 00:02:01.148 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 00:02:01.278 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:02:01.308 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 00:02:01.308 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 00:02:01.308 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 00:02:01.438 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 00:02:01.468 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:02:01.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:02:01.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:02:01.928 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 00:02:01.928 -07 000000610 INF: =================== Cycle #81 ===================
17-03-18 00:02:02.128 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 00:02:02.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:02:03.148 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 00:02:03.148 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 00:02:03.148 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:02:03.168 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 00:02:03.168 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 00:02:03.168 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 00:02:03.318 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 00:02:03.338 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 00:02:03.338 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 00:02:03.388 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:02:03.408 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 00:02:03.408 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 00:02:03.508 -07 000000610 INF: =================== Cycle #81, Pumping Reagent USM (2) ===================
17-03-18 00:02:03.508 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 00:02:03.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:02:03.538 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 00:02:03.538 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 00:02:03.538 -07 000000610 INF: =================== Cycle #81, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 00:02:03.668 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 00:02:03.708 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:02:05.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:02:05.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:02:05.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:02:05.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:02:05.628 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 00:02:05.628 -07 000000610 INF: =================== Cycle #81, Pumping Reagent USM (2) ===================
17-03-18 00:02:05.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:02:05.788 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 00:02:05.788 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 00:02:05.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:02:05.948 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 00:02:05.948 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 00:02:05.948 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 00:02:06.078 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 00:02:06.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:02:06.458 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.96762,
17-03-18 00:02:06.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:02:06.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:02:06.568 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 00:02:06.568 -07 000000610 INF: =================== Cycle #81 ===================
17-03-18 00:02:07.128 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:02:07.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:02:07.788 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 00:02:07.788 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 00:02:07.788 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:02:07.808 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 00:02:07.808 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 00:02:07.808 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 00:02:07.958 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 00:02:07.978 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 00:02:07.978 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 00:02:08.028 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:02:08.048 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 00:02:08.048 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 00:02:08.148 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3) ===================
17-03-18 00:02:08.148 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 00:02:08.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:02:08.178 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 00:02:08.178 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 00:02:08.178 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 00:02:08.308 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 00:02:08.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:02:09.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:02:09.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:02:09.248 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 00:02:09.248 -07 000000610 INF: =================== Cycle #81, Pumping Reagent PR2 (3) ===================
17-03-18 00:02:09.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:02:09.408 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 00:02:09.408 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 00:02:09.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 00:02:09.568 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 00:02:09.568 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 00:02:09.568 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 00:02:09.698 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 00:02:09.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:02:10.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 00:02:10.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:02:10.188 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 00:02:10.188 -07 000000610 INF: =================== Cycle #81 ===================
17-03-18 00:02:10.188 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 00:02:10.188 -07 000000458 INF: WaitCommand(10000) start
17-03-18 00:02:10.188 -07 000000618 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 00:02:11.408 -07 000000618 INF: AsyncDelayTimer waited 1214ms
17-03-18 00:02:11.408 -07 000000618 INF: LanePump: Xmit /1?\r
17-03-18 00:02:11.438 -07 000000618 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 00:02:11.438 -07 000000618 INF: LanePump: Current Position of Pump is: 1110
17-03-18 00:02:11.568 -07 000000618 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 00:02:11.608 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:02:11.818 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.990831,
17-03-18 00:02:12.128 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:02:12.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:02:13.138 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-18 00:02:13.168 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 00:02:13.588 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-18 00:02:13.618 -07 000000618 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 00:02:13.618 -07 000000618 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 00:02:13.618 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 00:02:13.618 -07 000000618 INF: ===================  ===================
17-03-18 00:02:17.128 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:02:17.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:02:17.178 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.994908,
17-03-18 00:02:20.198 -07 000000458 INF: WaitCommand(10000) end
17-03-18 00:02:20.198 -07 000000610 INF: =================== Cycle #81, Imaging ===================
17-03-18 00:02:20.198 -07 000000610 INF: Imaging Cycle 81: ScanTilesCommand Cycle 81 time start.
17-03-18 00:02:20.208 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 00:02:20.208 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:02:21.198 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 00:02:21.198 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 00:02:21.198 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 00:02:21.498 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 00:02:21.518 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 00:02:21.518 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 00:02:21.568 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 00:02:21.588 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 00:02:21.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:02:21.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:02:21.588 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 00:02:21.588 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:02:21.588 -07 000000501 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 00:02:21.588 -07 000000415 INF: FPGA: Recv EXLED1ON 
17-03-18 00:02:21.598 -07 000000501 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:02:21.598 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 00:02:21.598 -07 000000448 INF: FPGA: Recv EXLED1ADCR 23157
17-03-18 00:02:21.608 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:21.608 -07 000000501 INF: RedLED: Using Red data: Photodiode ADC 23157 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.8 mW
17-03-18 00:02:21.608 -07 000000501 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 00:02:21.608 -07 000000618 INF: FPGA: Recv EXLED1OFF 
17-03-18 00:02:21.618 -07 000000501 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:02:21.618 -07 000000501 INF: RedLED: LED was on for 19 ms
17-03-18 00:02:21.618 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 00:02:21.618 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 00:02:21.618 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:02:21.618 -07 000000501 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 00:02:21.618 -07 000000502 INF: FPGA: Recv EXLED2ON 
17-03-18 00:02:21.628 -07 000000501 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:02:21.628 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 00:02:21.628 -07 000000448 INF: FPGA: Recv EXLED1ADCR 2096
17-03-18 00:02:21.638 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:21.638 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 2096 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.2 mW
17-03-18 00:02:21.638 -07 000000501 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 00:02:21.638 -07 000000433 INF: FPGA: Recv EXLED2OFF 
17-03-18 00:02:21.648 -07 000000501 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:21.648 -07 000000501 INF: GreenLED: LED was on for 19 ms
17-03-18 00:02:21.648 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 00:02:21.648 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 00:02:21.648 -07 000000576 INF: FPGA: Recv EMCUR 
17-03-18 00:02:21.658 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:02:21.658 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 00:02:22.128 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:02:22.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:02:22.158 -07 000000576 INF: FPGA: Recv EMOUT
17-03-18 00:02:22.158 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 00:02:22.158 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 00:02:22.158 -07 000000561 INF: FPGA: Recv EMCUR 
17-03-18 00:02:22.168 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:02:22.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:02:22.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.126021628180877. ------
17-03-18 00:02:22.168 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:02:22.168 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17861 mm
17-03-18 00:02:22.168 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:02:22.168 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 00:02:22.168 -07 000000415 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-18 00:02:22.168 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 39017, sync = True, waitForSettling = False)
17-03-18 00:02:22.168 -07 000000429 INF: Z Motor: Moving to -0.178608 mm, started at -0.126022 mm, distance = -52.59 um
17-03-18 00:02:22.168 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:02:22.178 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 00:02:22.178 -07 000000429 INF: FPGA: Xmit ZDACW 39017\n [Z Motor]
17-03-18 00:02:22.178 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 00:02:22.188 -07 000000429 INF: FPGA: 'ZDACW 39017' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:22.188 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:02:22.188 -07 000000448 INF: FPGA: Recv ZDACR 39017
17-03-18 00:02:22.198 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:22.198 -07 000000429 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 00:02:22.198 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:22.198 -07 000000501 INF: FPGA: Recv YRDPOS 154379
17-03-18 00:02:22.208 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:02:22.208 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 00:02:22.208 -07 000000415 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:22.208 -07 000000415 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 00:02:22.208 -07 000000415 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 00:02:22.228 -07 000000415 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 00:02:22.408 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:02:22.408 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 00:02:22.538 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.970374,
17-03-18 00:02:23.908 -07 000000502 INF: FPGA: Recv YMVTO 122703 24776
17-03-18 00:02:23.908 -07 000000415 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1702 ms overall
17-03-18 00:02:23.908 -07 000000415 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 00:02:23.908 -07 000000415 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24776 steps (15.485 mm). Slippage = 0.018 mm (0.00%).
17-03-18 00:02:23.908 -07 000000415 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1702 ms, distance = 15.468 mm, average velocity = 9.088 mm/sec
17-03-18 00:02:26.758 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:26.758 -07 000000618 INF: FPGA: Recv YRDPOS 122696
17-03-18 00:02:26.768 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:26.768 -07 000000415 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:26.788 -07 000000415 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:02:26.788 -07 000000415 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 00:02:26.788 -07 000000415 INF: Y Motor: Moved to 59.9102 after 4617 ms
17-03-18 00:02:26.798 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178608 mm (DAC = 39017)
17-03-18 00:02:26.798 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:26.798 -07 000000429 INF: FPGA: Recv ZSGSRD 37096
17-03-18 00:02:26.808 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:26.808 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:26.808 -07 000000415 INF: FPGA: Recv ZSGSRD 37092
17-03-18 00:02:26.818 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:26.818 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:26.818 -07 000000448 INF: FPGA: Recv ZSGSRD 37095
17-03-18 00:02:26.828 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:26.828 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:26.828 -07 000000433 INF: FPGA: Recv ZSGSRD 37092
17-03-18 00:02:26.838 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:26.838 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:26.838 -07 000000448 INF: FPGA: Recv ZSGSRD 37094
17-03-18 00:02:26.848 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:26.848 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:26.848 -07 000000502 INF: FPGA: Recv ZSGSRD 37085
17-03-18 00:02:26.858 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:26.858 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:26.858 -07 000000502 INF: FPGA: Recv ZSGSRD 37085
17-03-18 00:02:26.868 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:26.868 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:26.868 -07 000000448 INF: FPGA: Recv ZSGSRD 37093
17-03-18 00:02:26.878 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:26.898 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:26.898 -07 000000429 INF: FPGA: Recv ZSGSRD 37095
17-03-18 00:02:26.908 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:02:26.928 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:26.928 -07 000000501 INF: FPGA: Recv ZSGSRD 37092
17-03-18 00:02:26.938 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:02:26.938 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:02:26.938 -07 000000502 INF: FPGA: Recv ZPIEZORD 33253
17-03-18 00:02:26.948 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:26.948 -07 000000561 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.954 V. Piezo Error = -8.5 V.
17-03-18 00:02:26.948 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37092 (-177.7 uncal um), Error = 0.9 uncal um, Median = 37092 (-177.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37085 (-177.7 uncal um), Max = 37096 (-177.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 00:02:26.948 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37092, posNoise = 4, negNoise = 7
17-03-18 00:02:26.948 -07 000000561 INF: Z Motor: After move to -0.178608, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:02:26.948 -07 000000561 INF: Z Motor: Settle wait time = 4620 ms, measure time = 150 ms (allowed 150 ms), total time = 4770 ms
17-03-18 00:02:26.948 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4774 ms
17-03-18 00:02:26.948 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:02:26.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:02:26.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:02:26.948 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:02:26.948 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:02:26.948 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:02:26.948 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:02:26.948 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:02:26.948 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 00:02:26.978 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 00:02:26.978 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:02:26.978 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 00:02:26.978 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:02:26.998 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 00:02:26.998 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-18 00:02:26.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:02:27.038 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:02:27.128 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:02:27.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:02:27.338 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:02:27.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:02:27.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:02:27.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 00:02:27.378 -07 000000433 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:02:27.378 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 00:02:27.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 00:02:27.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:02:27.468 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:27.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 00:02:27.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 00:02:27.578 -07 000000448 INF: Image SNR check: start
17-03-18 00:02:27.588 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:02:27.588 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:02:27.598 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 00:02:27.598 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:02:27.598 -07 000000448 INF: Image SNR check: pass  [peak (Max-Min)=80.53]
17-03-18 00:02:27.598 -07 000000448 INF: Autofocus start
17-03-18 00:02:27.598 -07 000000448 INF: MeasureProfile start
17-03-18 00:02:27.608 -07 000000448 INF: MeasureProfile done
17-03-18 00:02:27.608 -07 000000448 INF: X=-48  Z correction [um]=-0.3191189
17-03-18 00:02:27.608 -07 000000448 INF: Autofocus finished
17-03-18 00:02:27.798 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:02:27.798 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:02:27.798 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178610228773332. ----------
17-03-18 00:02:27.798 -07 000000610 INF: Cycle	81	Tile	1	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:02:27.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37460, sync = True, waitForSettling = True)
17-03-18 00:02:27.808 -07 000000610 INF: Z Motor: Moving to -0.171481 mm, started at -0.178610 mm, distance = 7.13 um
17-03-18 00:02:27.808 -07 000000610 INF: FPGA: Xmit ZDACW 37460\n [Z Motor]
17-03-18 00:02:27.808 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 00:02:27.818 -07 000000610 INF: FPGA: 'ZDACW 37460' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:27.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:02:27.818 -07 000000458 INF: FPGA: Recv ZDACR 37460
17-03-18 00:02:27.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:27.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:02:27.898 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.978563,
17-03-18 00:02:27.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:27.978 -07 000000424 INF: FPGA: Recv ZSGSRD 35984
17-03-18 00:02:27.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:27.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:27.988 -07 000000576 INF: FPGA: Recv ZSGSRD 35983
17-03-18 00:02:27.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:27.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:27.998 -07 000000476 INF: FPGA: Recv ZSGSRD 35982
17-03-18 00:02:28.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:28.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:28.008 -07 000000448 INF: FPGA: Recv ZSGSRD 35984
17-03-18 00:02:28.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:28.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:28.018 -07 000000502 INF: FPGA: Recv ZSGSRD 35986
17-03-18 00:02:28.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:28.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:28.028 -07 000000576 INF: FPGA: Recv ZSGSRD 35981
17-03-18 00:02:28.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:28.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:28.038 -07 000000433 INF: FPGA: Recv ZSGSRD 35983
17-03-18 00:02:28.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:28.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:28.048 -07 000000547 INF: FPGA: Recv ZSGSRD 35980
17-03-18 00:02:28.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:28.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:28.058 -07 000000448 INF: FPGA: Recv ZSGSRD 35983
17-03-18 00:02:28.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:28.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:28.068 -07 000000576 INF: FPGA: Recv ZSGSRD 35985
17-03-18 00:02:28.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:28.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:02:28.078 -07 000000433 INF: FPGA: Recv ZPIEZORD 31783
17-03-18 00:02:28.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:28.088 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.716 V. Piezo Error = -9.3 V.
17-03-18 00:02:28.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35983 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35983 (-170.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35980 (-170.6 uncal um), Max = 35986 (-170.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 00:02:28.088 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35983, posNoise = 3, negNoise = 3
17-03-18 00:02:28.088 -07 000000610 INF: Z Motor: After move to -0.171481, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:02:28.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 00:02:28.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:02:28.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:02:28.088 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:02:28.088 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:02:28.088 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:02:28.088 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:02:28.088 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:02:28.088 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:02:28.088 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:02:28.088 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:02:28.088 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:02:28.088 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 00:02:28.098 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:02:28.098 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:02:28.108 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 00:02:28.108 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 00:02:28.108 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 00:02:28.108 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:02:28.118 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:02:28.118 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:02:28.128 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 00:02:28.128 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-18 00:02:28.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37637 150\n [Camera]
17-03-18 00:02:28.328 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:02:29.368 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:02:29.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:02:29.368 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:02:29.368 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:02:29.368 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 00:02:29.368 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:02:29.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:02:29.368 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:02:29.368 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:02:29.368 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 00:02:29.558 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37637 1422
17-03-18 00:02:29.708 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:02:29.768 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 00:02:29.768 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 00:02:29.768 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:29.768 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 00:02:29.768 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 00:02:29.768 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:29.778 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 00:02:29.778 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 00:02:29.778 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 00:02:29.788 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 00:02:30.208 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:02:30.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:02:30.208 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:02:30.208 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:02:30.208 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 00:02:30.218 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:02:30.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:02:30.218 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:02:30.218 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:02:30.218 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 00:02:30.398 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:02:30.398 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:02:30.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37637 150' command took 2 ms to send, 2269 ms to get response, and 2272 ms overall
17-03-18 00:02:30.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:02:30.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171485777508119. ------
17-03-18 00:02:30.408 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:02:30.408 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17732 mm
17-03-18 00:02:30.408 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:02:30.408 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:02:30.418 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:02:30.418 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 00:02:30.418 -07 000000618 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 00:02:30.418 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:30.418 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38735, sync = True, waitForSettling = False)
17-03-18 00:02:30.418 -07 000000415 INF: Z Motor: Moving to -0.177317 mm, started at -0.171486 mm, distance = -5.83 um
17-03-18 00:02:30.418 -07 000000501 INF: FPGA: Recv YRDPOS 122696
17-03-18 00:02:30.428 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:30.428 -07 000000415 INF: FPGA: Xmit ZDACW 38735\n [Z Motor]
17-03-18 00:02:30.428 -07 000000618 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:30.428 -07 000000618 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:02:30.428 -07 000000618 INF: Y Motor: Moving 1332 steps2
17-03-18 00:02:30.428 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 00:02:30.438 -07 000000415 INF: FPGA: 'ZDACW 38735' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 00:02:30.438 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:02:30.448 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:02:30.458 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:02:30.458 -07 000000012 INF: FPGA: Recv ZDACR 38735
17-03-18 00:02:30.468 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:02:30.468 -07 000000415 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 00:02:30.618 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 00:02:30.618 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 00:02:30.618 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:30.618 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 00:02:30.618 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 00:02:30.618 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:30.628 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 00:02:30.628 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 00:02:30.628 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 00:02:30.628 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 00:02:30.638 -07 000000586 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:02:30.638 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 00:02:30.828 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 00:02:30.828 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 402 ms overall
17-03-18 00:02:30.858 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:30.868 -07 000000547 INF: FPGA: Recv YRDPOS 124379
17-03-18 00:02:30.868 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 00:02:30.868 -07 000000618 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:30.868 -07 000000618 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 00:02:30.868 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 402 ms, distance = 0.832 mm, average velocity = 2.071 mm/sec
17-03-18 00:02:31.818 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:31.818 -07 000000431 INF: FPGA: Recv YRDPOS 124380
17-03-18 00:02:31.828 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:31.828 -07 000000618 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:31.848 -07 000000618 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:02:31.848 -07 000000618 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 00:02:31.848 -07 000000618 INF: Y Motor: Moved to 60.7324 after 1438 ms (table move)
17-03-18 00:02:31.858 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177317 mm (DAC = 38735)
17-03-18 00:02:31.858 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:31.858 -07 000000429 INF: FPGA: Recv ZSGSRD 36900
17-03-18 00:02:31.868 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:02:31.868 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:31.868 -07 000000576 INF: FPGA: Recv ZSGSRD 36891
17-03-18 00:02:31.878 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:31.878 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:31.878 -07 000000429 INF: FPGA: Recv ZSGSRD 36884
17-03-18 00:02:31.888 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:31.888 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:31.888 -07 000000501 INF: FPGA: Recv ZSGSRD 36893
17-03-18 00:02:31.898 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:02:31.898 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:31.898 -07 000000576 INF: FPGA: Recv ZSGSRD 36891
17-03-18 00:02:31.908 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:31.908 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:31.908 -07 000000618 INF: FPGA: Recv ZSGSRD 36885
17-03-18 00:02:31.918 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:31.918 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:31.918 -07 000000586 INF: FPGA: Recv ZSGSRD 36896
17-03-18 00:02:31.928 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:31.928 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:31.928 -07 000000501 INF: FPGA: Recv ZSGSRD 36893
17-03-18 00:02:31.938 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:31.938 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:31.938 -07 000000424 INF: FPGA: Recv ZSGSRD 36895
17-03-18 00:02:31.948 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:31.948 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:31.948 -07 000000429 INF: FPGA: Recv ZSGSRD 36891
17-03-18 00:02:31.958 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:31.968 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:02:31.968 -07 000000501 INF: FPGA: Recv ZPIEZORD 33002
17-03-18 00:02:31.978 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:02:31.978 -07 000000476 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.6 V.
17-03-18 00:02:31.978 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36892 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36892 (-176.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36884 (-176.4 uncal um), Max = 36900 (-176.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 00:02:31.978 -07 000000476 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36892, posNoise = 8, negNoise = 8
17-03-18 00:02:31.978 -07 000000476 INF: Z Motor: After move to -0.177317, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:02:31.978 -07 000000476 INF: Z Motor: Settle wait time = 1440 ms, measure time = 119 ms (allowed 150 ms), total time = 1559 ms
17-03-18 00:02:31.978 -07 000000476 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-18 00:02:32.018 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 00:02:32.018 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:02:32.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:02:32.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:02:32.018 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:02:32.018 -07 000000586 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:02:32.018 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:02:32.018 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:02:32.018 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 00:02:32.018 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:02:32.028 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:02:32.028 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:02:32.038 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 00:02:32.038 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 00:02:32.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:02:32.078 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:02:32.128 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:02:32.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:02:32.378 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:02:32.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:02:32.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:02:32.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 00:02:32.418 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:02:32.418 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 00:02:32.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 00:02:32.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:02:32.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:32.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 00:02:32.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:02:32.618 -07 000000586 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:02:32.618 -07 000000429 INF: Autofocus start
17-03-18 00:02:32.618 -07 000000429 INF: MeasureProfile start
17-03-18 00:02:32.618 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:02:32.628 -07 000000586 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:02:32.628 -07 000000586 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:02:32.628 -07 000000429 INF: MeasureProfile done
17-03-18 00:02:32.628 -07 000000429 INF: X=64  Z correction [um]=0.2557664
17-03-18 00:02:32.628 -07 000000429 INF: Autofocus finished
17-03-18 00:02:32.828 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:02:32.828 -07 000000586 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 00:02:32.828 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.17732538634498. ----------
17-03-18 00:02:32.828 -07 000000610 INF: Cycle	81	Tile	2	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:02:32.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37304, sync = True, waitForSettling = True)
17-03-18 00:02:32.838 -07 000000610 INF: Z Motor: Moving to -0.170767 mm, started at -0.177325 mm, distance = 6.56 um
17-03-18 00:02:32.838 -07 000000610 INF: FPGA: Xmit ZDACW 37304\n [Z Motor]
17-03-18 00:02:32.838 -07 000000476 INF: FPGA: Recv ZDACW
17-03-18 00:02:32.848 -07 000000610 INF: FPGA: 'ZDACW 37304' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:02:32.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:02:32.848 -07 000000429 INF: FPGA: Recv ZDACR 37304
17-03-18 00:02:32.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:32.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:02:33.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:33.008 -07 000000424 INF: FPGA: Recv ZSGSRD 35875
17-03-18 00:02:33.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:33.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:33.018 -07 000000586 INF: FPGA: Recv ZSGSRD 35877
17-03-18 00:02:33.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:33.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:33.028 -07 000000501 INF: FPGA: Recv ZSGSRD 35877
17-03-18 00:02:33.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:33.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:33.038 -07 000000429 INF: FPGA: Recv ZSGSRD 35872
17-03-18 00:02:33.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:33.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:33.048 -07 000000476 INF: FPGA: Recv ZSGSRD 35875
17-03-18 00:02:33.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:33.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:33.058 -07 000000618 INF: FPGA: Recv ZSGSRD 35873
17-03-18 00:02:33.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:33.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:33.068 -07 000000586 INF: FPGA: Recv ZSGSRD 35878
17-03-18 00:02:33.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:33.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:33.078 -07 000000618 INF: FPGA: Recv ZSGSRD 35876
17-03-18 00:02:33.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:33.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:33.088 -07 000000501 INF: FPGA: Recv ZSGSRD 35867
17-03-18 00:02:33.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:33.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:33.098 -07 000000429 INF: FPGA: Recv ZSGSRD 35874
17-03-18 00:02:33.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:33.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:02:33.108 -07 000000586 INF: FPGA: Recv ZPIEZORD 31612
17-03-18 00:02:33.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:33.118 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.692 V. Piezo Error = -9.4 V.
17-03-18 00:02:33.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35874 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35875 (-169.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35867 (-169.9 uncal um), Max = 35878 (-169.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 00:02:33.118 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35874, posNoise = 4, negNoise = 7
17-03-18 00:02:33.118 -07 000000610 INF: Z Motor: After move to -0.170767, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:02:33.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 00:02:33.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:02:33.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:02:33.118 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:02:33.118 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:02:33.118 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:02:33.118 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:02:33.118 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:02:33.118 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:02:33.118 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:02:33.118 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:02:33.118 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:02:33.118 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:02:33.128 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:02:33.128 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:02:33.128 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:02:33.128 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:02:33.138 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:02:33.138 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:02:33.138 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 00:02:33.138 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:02:33.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37480 150\n [Camera]
17-03-18 00:02:33.258 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.96762,
17-03-18 00:02:33.348 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:02:34.378 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:02:34.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:02:34.388 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:02:34.388 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:02:34.388 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 00:02:34.388 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:02:34.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:02:34.388 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:02:34.388 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:02:34.388 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 00:02:34.578 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37480 1422
17-03-18 00:02:34.728 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:02:34.778 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 00:02:34.778 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 00:02:34.778 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:34.778 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 00:02:34.778 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 00:02:34.778 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:34.778 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:02:34.778 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:02:34.778 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 00:02:34.788 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 00:02:35.228 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:02:35.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:02:35.228 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:02:35.358 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:02:35.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:02:35.358 -07 000000586 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:02:35.368 -07 000000586 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:02:35.368 -07 000000586 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 00:02:35.368 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:02:35.368 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 00:02:35.418 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:02:35.418 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:02:35.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37480 150' command took 2 ms to send, 2264 ms to get response, and 2272 ms overall
17-03-18 00:02:35.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:02:35.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.170785538384668. ------
17-03-18 00:02:35.418 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:02:35.418 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17738 mm
17-03-18 00:02:35.418 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:02:35.428 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 00:02:35.428 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38749, sync = True, waitForSettling = False)
17-03-18 00:02:35.428 -07 000000561 INF: Z Motor: Moving to -0.177382 mm, started at -0.170786 mm, distance = -6.60 um
17-03-18 00:02:35.428 -07 000000561 INF: FPGA: Xmit ZDACW 38749\n [Z Motor]
17-03-18 00:02:35.428 -07 000000626 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 00:02:35.428 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:02:35.428 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 00:02:35.428 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 00:02:35.438 -07 000000561 INF: FPGA: 'ZDACW 38749' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:02:35.438 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:02:35.448 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:35.448 -07 000000547 INF: FPGA: Recv YRDPOS 124380
17-03-18 00:02:35.458 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:02:35.458 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 00:02:35.458 -07 000000626 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:35.458 -07 000000626 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:02:35.458 -07 000000626 INF: Y Motor: Moving 1344 steps-22
17-03-18 00:02:35.458 -07 000000429 INF: FPGA: Recv ZDACR 38749
17-03-18 00:02:35.468 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:02:35.468 -07 000000561 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 00:02:35.468 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:02:35.638 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:02:35.638 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 207 ms overall
17-03-18 00:02:35.758 -07 000000586 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 00:02:35.758 -07 000000586 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 00:02:35.758 -07 000000586 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:35.758 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 00:02:35.758 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 00:02:35.758 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:35.768 -07 000000586 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:02:35.768 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:02:35.768 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 538 ms.
17-03-18 00:02:35.768 -07 000000586 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 00:02:35.838 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 00:02:35.838 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 00:02:35.878 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:35.888 -07 000000012 INF: FPGA: Recv YRDPOS 126081
17-03-18 00:02:35.898 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:35.898 -07 000000626 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:35.898 -07 000000626 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 00:02:35.898 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.177 mm/sec
17-03-18 00:02:36.848 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:36.848 -07 000000501 INF: FPGA: Recv YRDPOS 126081
17-03-18 00:02:36.858 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:36.858 -07 000000626 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:36.878 -07 000000626 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:02:36.878 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:02:36.878 -07 000000626 INF: Y Motor: Moved to 61.5630 after 1454 ms (table move)
17-03-18 00:02:36.888 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177382 mm (DAC = 38749)
17-03-18 00:02:36.888 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:36.888 -07 000000626 INF: FPGA: Recv ZSGSRD 36895
17-03-18 00:02:36.898 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:02:36.898 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:36.898 -07 000000448 INF: FPGA: Recv ZSGSRD 36899
17-03-18 00:02:36.908 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:36.908 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:36.908 -07 000000618 INF: FPGA: Recv ZSGSRD 36906
17-03-18 00:02:36.918 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:36.918 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:36.918 -07 000000547 INF: FPGA: Recv ZSGSRD 36903
17-03-18 00:02:36.928 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:36.928 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:36.928 -07 000000502 INF: FPGA: Recv ZSGSRD 36899
17-03-18 00:02:36.938 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:36.938 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:36.938 -07 000000501 INF: FPGA: Recv ZSGSRD 36907
17-03-18 00:02:36.948 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:36.948 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:36.948 -07 000000012 INF: FPGA: Recv ZSGSRD 36903
17-03-18 00:02:36.958 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:36.958 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:36.958 -07 000000424 INF: FPGA: Recv ZSGSRD 36897
17-03-18 00:02:36.968 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:36.968 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:36.968 -07 000000576 INF: FPGA: Recv ZSGSRD 36896
17-03-18 00:02:36.978 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:36.978 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:36.978 -07 000000626 INF: FPGA: Recv ZSGSRD 36904
17-03-18 00:02:36.988 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:36.988 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:02:36.988 -07 000000433 INF: FPGA: Recv ZPIEZORD 33019
17-03-18 00:02:36.998 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:36.998 -07 000000476 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.913 V. Piezo Error = -8.6 V.
17-03-18 00:02:36.998 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36901 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36901 (-176.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36895 (-176.5 uncal um), Max = 36907 (-176.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:02:36.998 -07 000000476 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36901, posNoise = 6, negNoise = 6
17-03-18 00:02:36.998 -07 000000476 INF: Z Motor: After move to -0.177382, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:02:36.998 -07 000000476 INF: Z Motor: Settle wait time = 1457 ms, measure time = 110 ms (allowed 150 ms), total time = 1567 ms
17-03-18 00:02:36.998 -07 000000476 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 00:02:37.038 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 00:02:37.038 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:02:37.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:02:37.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:02:37.038 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:02:37.038 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:02:37.038 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:02:37.038 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:02:37.048 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:02:37.048 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:02:37.048 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:02:37.048 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:02:37.058 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 00:02:37.058 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 00:02:37.058 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:02:37.098 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:02:37.128 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:02:37.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:02:37.398 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:02:37.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:02:37.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:02:37.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-18 00:02:37.438 -07 000000429 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:02:37.438 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-18 00:02:37.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 00:02:37.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 00:02:37.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:37.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:02:37.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:02:37.638 -07 000000501 INF: Autofocus start
17-03-18 00:02:37.638 -07 000000501 INF: MeasureProfile start
17-03-18 00:02:37.648 -07 000000501 INF: MeasureProfile done
17-03-18 00:02:37.648 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-18 00:02:37.648 -07 000000501 INF: Autofocus finished
17-03-18 00:02:37.658 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:02:37.658 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:02:37.668 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 00:02:37.668 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:02:37.868 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:02:37.868 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:02:37.868 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177383204254256. ----------
17-03-18 00:02:37.868 -07 000000610 INF: Cycle	81	Tile	3	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:02:37.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37246, sync = True, waitForSettling = True)
17-03-18 00:02:37.878 -07 000000610 INF: Z Motor: Moving to -0.170501 mm, started at -0.177383 mm, distance = 6.88 um
17-03-18 00:02:37.878 -07 000000610 INF: FPGA: Xmit ZDACW 37246\n [Z Motor]
17-03-18 00:02:37.878 -07 000000458 INF: FPGA: Recv ZDACW
17-03-18 00:02:37.888 -07 000000610 INF: FPGA: 'ZDACW 37246' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:02:37.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:02:37.888 -07 000000429 INF: FPGA: Recv ZDACR 37246
17-03-18 00:02:37.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:37.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:02:38.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:38.048 -07 000000618 INF: FPGA: Recv ZSGSRD 35834
17-03-18 00:02:38.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:38.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:38.058 -07 000000433 INF: FPGA: Recv ZSGSRD 35833
17-03-18 00:02:38.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:38.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:38.068 -07 000000012 INF: FPGA: Recv ZSGSRD 35829
17-03-18 00:02:38.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:38.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:38.078 -07 000000561 INF: FPGA: Recv ZSGSRD 35827
17-03-18 00:02:38.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:38.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:38.088 -07 000000586 INF: FPGA: Recv ZSGSRD 35833
17-03-18 00:02:38.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:38.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:38.098 -07 000000502 INF: FPGA: Recv ZSGSRD 35830
17-03-18 00:02:38.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:38.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:38.108 -07 000000458 INF: FPGA: Recv ZSGSRD 35834
17-03-18 00:02:38.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:38.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:38.118 -07 000000476 INF: FPGA: Recv ZSGSRD 35833
17-03-18 00:02:38.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:38.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:38.128 -07 000000576 INF: FPGA: Recv ZSGSRD 35830
17-03-18 00:02:38.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:38.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:38.138 -07 000000476 INF: FPGA: Recv ZSGSRD 35829
17-03-18 00:02:38.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:38.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:02:38.148 -07 000000012 INF: FPGA: Recv ZPIEZORD 31560
17-03-18 00:02:38.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:38.158 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.683 V. Piezo Error = -9.4 V.
17-03-18 00:02:38.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35831 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35832 (-169.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35827 (-169.6 uncal um), Max = 35834 (-169.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 00:02:38.158 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35831, posNoise = 3, negNoise = 4
17-03-18 00:02:38.158 -07 000000610 INF: Z Motor: After move to -0.170501, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:02:38.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 00:02:38.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:02:38.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:02:38.158 -07 000000586 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:02:38.158 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:02:38.158 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:02:38.158 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:02:38.158 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:02:38.158 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:02:38.158 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:02:38.158 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:02:38.158 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:02:38.168 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:02:38.168 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:02:38.168 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:02:38.168 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 00:02:38.168 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:02:38.178 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:02:38.178 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:02:38.188 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:02:38.188 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:02:38.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37423 150\n [Camera]
17-03-18 00:02:38.388 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:02:38.618 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.988112,
17-03-18 00:02:39.418 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:02:39.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:02:39.428 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:02:39.428 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:02:39.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:02:39.428 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:02:39.538 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:02:39.538 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 00:02:39.548 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:02:39.548 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 00:02:39.618 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37423 1422
17-03-18 00:02:39.768 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:02:39.938 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 00:02:39.938 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 00:02:39.938 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:39.938 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 00:02:39.938 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 00:02:39.938 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:39.938 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:02:39.938 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-18 00:02:39.938 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:02:39.948 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 523 ms.
17-03-18 00:02:40.268 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:02:40.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:02:40.268 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:02:40.268 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:02:40.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:02:40.268 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:02:40.268 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:02:40.268 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 00:02:40.278 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:02:40.278 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 00:02:40.458 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:02:40.458 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:02:40.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37423 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall
17-03-18 00:02:40.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:02:40.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.170509297262572. ------
17-03-18 00:02:40.468 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:02:40.468 -07 000000586 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17675 mm
17-03-18 00:02:40.468 -07 000000586 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:02:40.468 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:02:40.468 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 00:02:40.468 -07 000000547 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 00:02:40.468 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38610, sync = True, waitForSettling = False)
17-03-18 00:02:40.468 -07 000000458 INF: Z Motor: Moving to -0.176745 mm, started at -0.170509 mm, distance = -6.24 um
17-03-18 00:02:40.478 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:40.478 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:40.478 -07 000000476 INF: FPGA: Recv YRDPOS 126082
17-03-18 00:02:40.488 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 00:02:40.488 -07 000000547 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:40.488 -07 000000458 INF: FPGA: Xmit ZDACW 38610\n [Z Motor]
17-03-18 00:02:40.488 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 00:02:40.488 -07 000000547 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:02:40.488 -07 000000547 INF: Y Motor: Moving 1343 steps-20
17-03-18 00:02:40.498 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:02:40.498 -07 000000458 INF: FPGA: 'ZDACW 38610' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 00:02:40.508 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:02:40.518 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:02:40.518 -07 000000561 INF: FPGA: Recv ZDACR 38610
17-03-18 00:02:40.528 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:02:40.528 -07 000000458 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 00:02:40.668 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 00:02:40.668 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 00:02:40.668 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:40.668 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 00:02:40.668 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 00:02:40.668 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:40.668 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:02:40.668 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 00:02:40.678 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:02:40.678 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 00:02:40.698 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:02:40.698 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 00:02:40.878 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-18 00:02:40.878 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 00:02:40.918 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:40.928 -07 000000458 INF: FPGA: Recv YRDPOS 127785
17-03-18 00:02:40.938 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:40.938 -07 000000547 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:40.938 -07 000000547 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 00:02:40.938 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.126 mm/sec
17-03-18 00:02:41.888 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:41.888 -07 000000576 INF: FPGA: Recv YRDPOS 127785
17-03-18 00:02:41.898 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:41.898 -07 000000547 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:41.918 -07 000000547 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:02:41.918 -07 000000547 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:02:41.918 -07 000000547 INF: Y Motor: Moved to 62.3950 after 1451 ms (table move)
17-03-18 00:02:41.928 -07 000000586 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176745 mm (DAC = 38610)
17-03-18 00:02:41.928 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:41.928 -07 000000429 INF: FPGA: Recv ZSGSRD 36805
17-03-18 00:02:41.938 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:41.938 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:41.938 -07 000000012 INF: FPGA: Recv ZSGSRD 36806
17-03-18 00:02:41.948 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:41.948 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:41.948 -07 000000429 INF: FPGA: Recv ZSGSRD 36805
17-03-18 00:02:41.958 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:41.958 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:41.958 -07 000000012 INF: FPGA: Recv ZSGSRD 36806
17-03-18 00:02:41.968 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:41.968 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:41.968 -07 000000547 INF: FPGA: Recv ZSGSRD 36805
17-03-18 00:02:41.978 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:41.978 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:41.978 -07 000000012 INF: FPGA: Recv ZSGSRD 36798
17-03-18 00:02:41.988 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:41.988 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:41.988 -07 000000561 INF: FPGA: Recv ZSGSRD 36800
17-03-18 00:02:41.998 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:41.998 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:41.998 -07 000000012 INF: FPGA: Recv ZSGSRD 36801
17-03-18 00:02:42.008 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:42.008 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:42.008 -07 000000429 INF: FPGA: Recv ZSGSRD 36802
17-03-18 00:02:42.018 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:42.018 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:42.018 -07 000000012 INF: FPGA: Recv ZSGSRD 36806
17-03-18 00:02:42.028 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:42.028 -07 000000586 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:02:42.028 -07 000000561 INF: FPGA: Recv ZPIEZORD 32892
17-03-18 00:02:42.038 -07 000000586 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:42.038 -07 000000586 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.892 V. Piezo Error = -8.6 V.
17-03-18 00:02:42.038 -07 000000586 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36803 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36805 (-175.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36798 (-175.8 uncal um), Max = 36806 (-175.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 00:02:42.038 -07 000000586 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36803, posNoise = 3, negNoise = 5
17-03-18 00:02:42.038 -07 000000586 INF: Z Motor: After move to -0.176745, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:02:42.038 -07 000000586 INF: Z Motor: Settle wait time = 1453 ms, measure time = 110 ms (allowed 150 ms), total time = 1563 ms
17-03-18 00:02:42.038 -07 000000586 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 00:02:42.078 -07 000000586 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 00:02:42.078 -07 000000586 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:02:42.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:02:42.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:02:42.078 -07 000000586 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:02:42.078 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:02:42.078 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:02:42.078 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:02:42.078 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 00:02:42.078 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:02:42.088 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:02:42.088 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:02:42.088 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 00:02:42.088 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 00:02:42.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:02:42.128 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:02:42.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:02:42.138 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:02:42.438 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:02:42.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:02:42.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:02:42.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-18 00:02:42.478 -07 000000429 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:02:42.478 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 00:02:42.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 00:02:42.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:02:42.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:42.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:02:42.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 132 ms.
17-03-18 00:02:42.678 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:02:42.678 -07 000000429 INF: Autofocus start
17-03-18 00:02:42.678 -07 000000429 INF: MeasureProfile start
17-03-18 00:02:42.678 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:02:42.688 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:02:42.688 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:02:42.688 -07 000000429 INF: MeasureProfile done
17-03-18 00:02:42.688 -07 000000429 INF: X=16  Z correction [um]=0.01042744
17-03-18 00:02:42.688 -07 000000429 INF: Autofocus finished
17-03-18 00:02:42.888 -07 000000586 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:02:42.888 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:02:42.888 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.176753631464363. ----------
17-03-18 00:02:42.888 -07 000000610 INF: Cycle	81	Tile	4	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:02:42.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37125, sync = True, waitForSettling = True)
17-03-18 00:02:42.898 -07 000000610 INF: Z Motor: Moving to -0.169947 mm, started at -0.176754 mm, distance = 6.81 um
17-03-18 00:02:42.898 -07 000000610 INF: FPGA: Xmit ZDACW 37125\n [Z Motor]
17-03-18 00:02:42.898 -07 000000586 INF: FPGA: Recv ZDACW
17-03-18 00:02:42.908 -07 000000610 INF: FPGA: 'ZDACW 37125' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:42.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:02:42.908 -07 000000561 INF: FPGA: Recv ZDACR 37125
17-03-18 00:02:42.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:42.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:02:43.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:43.068 -07 000000429 INF: FPGA: Recv ZSGSRD 35744
17-03-18 00:02:43.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:43.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:43.078 -07 000000476 INF: FPGA: Recv ZSGSRD 35742
17-03-18 00:02:43.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:43.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:43.088 -07 000000586 INF: FPGA: Recv ZSGSRD 35748
17-03-18 00:02:43.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:43.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:43.098 -07 000000561 INF: FPGA: Recv ZSGSRD 35741
17-03-18 00:02:43.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:43.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:43.108 -07 000000458 INF: FPGA: Recv ZSGSRD 35743
17-03-18 00:02:43.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:43.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:43.118 -07 000000476 INF: FPGA: Recv ZSGSRD 35755
17-03-18 00:02:43.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:43.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:43.128 -07 000000586 INF: FPGA: Recv ZSGSRD 35742
17-03-18 00:02:43.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:43.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:43.138 -07 000000429 INF: FPGA: Recv ZSGSRD 35746
17-03-18 00:02:43.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:43.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:43.148 -07 000000012 INF: FPGA: Recv ZSGSRD 35743
17-03-18 00:02:43.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:43.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:43.158 -07 000000547 INF: FPGA: Recv ZSGSRD 35749
17-03-18 00:02:43.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:02:43.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:02:43.168 -07 000000561 INF: FPGA: Recv ZPIEZORD 31456
17-03-18 00:02:43.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:43.178 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.665 V. Piezo Error = -9.5 V.
17-03-18 00:02:43.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35745 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35744 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35741 (-169.1 uncal um), Max = 35755 (-169.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 00:02:43.178 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35745, posNoise = 10, negNoise = 4
17-03-18 00:02:43.178 -07 000000610 INF: Z Motor: After move to -0.169947, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:02:43.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 00:02:43.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:02:43.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:02:43.178 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:02:43.178 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:02:43.178 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:02:43.178 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:02:43.178 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:02:43.178 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:02:43.178 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:02:43.178 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:02:43.178 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:02:43.178 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:02:43.188 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:02:43.188 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:02:43.188 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:02:43.188 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:02:43.198 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:02:43.198 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:02:43.198 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:02:43.198 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:02:43.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37302 150\n [Camera]
17-03-18 00:02:43.408 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:02:43.978 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.99219,
17-03-18 00:02:44.438 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:02:44.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:02:44.438 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:02:44.448 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:02:44.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:02:44.448 -07 000000586 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:02:44.448 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:02:44.448 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 00:02:44.458 -07 000000586 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:02:44.458 -07 000000586 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 00:02:44.638 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37302 1422
17-03-18 00:02:44.778 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:02:44.848 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 00:02:44.848 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 00:02:44.848 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:44.848 -07 000000586 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 00:02:44.848 -07 000000586 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 00:02:44.848 -07 000000586 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:44.848 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:02:44.848 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 00:02:44.858 -07 000000586 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:02:44.858 -07 000000586 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 00:02:45.288 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:02:45.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:02:45.288 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:02:45.288 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:02:45.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:02:45.288 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:02:45.298 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:02:45.298 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 00:02:45.298 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:02:45.298 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 00:02:45.478 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:02:45.478 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:02:45.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37302 150' command took 4 ms to send, 2262 ms to get response, and 2273 ms overall
17-03-18 00:02:45.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:02:45.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.16995681501838. ------
17-03-18 00:02:45.488 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:02:45.488 -07 000000586 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17661 mm
17-03-18 00:02:45.488 -07 000000586 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:02:45.488 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 00:02:45.488 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:02:45.488 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38579, sync = True, waitForSettling = False)
17-03-18 00:02:45.488 -07 000000576 INF: Z Motor: Moving to -0.176603 mm, started at -0.169957 mm, distance = -6.65 um
17-03-18 00:02:45.488 -07 000000429 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 00:02:45.498 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:45.498 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:45.498 -07 000000626 INF: FPGA: Recv YRDPOS 127785
17-03-18 00:02:45.508 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 00:02:45.508 -07 000000429 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:45.508 -07 000000429 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:02:45.508 -07 000000429 INF: Y Motor: Moving 1340 steps-16
17-03-18 00:02:45.508 -07 000000576 INF: FPGA: Xmit ZDACW 38579\n [Z Motor]
17-03-18 00:02:45.508 -07 000000415 INF: FPGA: Recv ZDACW
17-03-18 00:02:45.518 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:02:45.518 -07 000000576 INF: FPGA: 'ZDACW 38579' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 00:02:45.528 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:02:45.538 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:02:45.538 -07 000000561 INF: FPGA: Recv ZDACR 38579
17-03-18 00:02:45.548 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:02:45.548 -07 000000576 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 00:02:45.698 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 00:02:45.698 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 00:02:45.698 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:45.698 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 00:02:45.698 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 00:02:45.698 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:45.698 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:02:45.698 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:02:45.698 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 417 ms.
17-03-18 00:02:45.708 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-18 00:02:45.718 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:02:45.718 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 00:02:45.898 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 00:02:45.898 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 00:02:45.938 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:45.948 -07 000000547 INF: FPGA: Recv YRDPOS 129481
17-03-18 00:02:45.958 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:45.958 -07 000000429 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:45.958 -07 000000429 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 00:02:45.958 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-18 00:02:46.908 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:46.908 -07 000000576 INF: FPGA: Recv YRDPOS 129481
17-03-18 00:02:46.918 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:46.918 -07 000000429 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:46.938 -07 000000429 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:02:46.938 -07 000000429 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:02:46.938 -07 000000429 INF: Y Motor: Moved to 63.2231 after 1455 ms (table move)
17-03-18 00:02:46.948 -07 000000586 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176603 mm (DAC = 38579)
17-03-18 00:02:46.948 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:46.948 -07 000000547 INF: FPGA: Recv ZSGSRD 36786
17-03-18 00:02:46.958 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:02:46.958 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:46.958 -07 000000431 INF: FPGA: Recv ZSGSRD 36780
17-03-18 00:02:46.968 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:46.968 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:46.968 -07 000000547 INF: FPGA: Recv ZSGSRD 36780
17-03-18 00:02:46.978 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:46.978 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:46.978 -07 000000431 INF: FPGA: Recv ZSGSRD 36783
17-03-18 00:02:46.988 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:46.988 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:46.988 -07 000000547 INF: FPGA: Recv ZSGSRD 36785
17-03-18 00:02:46.998 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:46.998 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:46.998 -07 000000561 INF: FPGA: Recv ZSGSRD 36780
17-03-18 00:02:47.008 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:47.008 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:47.008 -07 000000626 INF: FPGA: Recv ZSGSRD 36778
17-03-18 00:02:47.018 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:47.018 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:47.018 -07 000000576 INF: FPGA: Recv ZSGSRD 36779
17-03-18 00:02:47.028 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:47.028 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:47.028 -07 000000626 INF: FPGA: Recv ZSGSRD 36774
17-03-18 00:02:47.038 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:47.038 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:47.038 -07 000000561 INF: FPGA: Recv ZSGSRD 36779
17-03-18 00:02:47.048 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:47.048 -07 000000586 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:02:47.048 -07 000000547 INF: FPGA: Recv ZPIEZORD 32864
17-03-18 00:02:47.058 -07 000000586 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:47.058 -07 000000586 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.887 V. Piezo Error = -8.7 V.
17-03-18 00:02:47.058 -07 000000586 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36780 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36780 (-175.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36774 (-175.7 uncal um), Max = 36786 (-175.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:02:47.058 -07 000000586 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36780, posNoise = 6, negNoise = 6
17-03-18 00:02:47.058 -07 000000586 INF: Z Motor: After move to -0.176603, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:02:47.058 -07 000000586 INF: Z Motor: Settle wait time = 1459 ms, measure time = 108 ms (allowed 150 ms), total time = 1567 ms
17-03-18 00:02:47.058 -07 000000586 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 00:02:47.108 -07 000000586 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 00:02:47.108 -07 000000586 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:02:47.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:02:47.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:02:47.108 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:02:47.108 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:02:47.108 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:02:47.108 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:02:47.108 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 00:02:47.108 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:02:47.108 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:02:47.118 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:02:47.118 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 00:02:47.118 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 00:02:47.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:02:47.128 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:02:47.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:02:47.168 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:02:47.468 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:02:47.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:02:47.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:02:47.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 00:02:47.508 -07 000000431 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:02:47.508 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-18 00:02:47.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 00:02:47.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 00:02:47.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:47.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:02:47.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 00:02:47.708 -07 000000586 INF: Autofocus start
17-03-18 00:02:47.708 -07 000000586 INF: MeasureProfile start
17-03-18 00:02:47.708 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:02:47.708 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:02:47.718 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:02:47.718 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:02:47.718 -07 000000586 INF: MeasureProfile done
17-03-18 00:02:47.718 -07 000000586 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 00:02:47.718 -07 000000586 INF: Autofocus finished
17-03-18 00:02:47.918 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:02:47.918 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 00:02:47.918 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.176605874585103. ----------
17-03-18 00:02:47.918 -07 000000610 INF: Cycle	81	Tile	5	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:02:47.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37059, sync = True, waitForSettling = True)
17-03-18 00:02:47.928 -07 000000610 INF: Z Motor: Moving to -0.169645 mm, started at -0.176606 mm, distance = 6.96 um
17-03-18 00:02:47.928 -07 000000610 INF: FPGA: Xmit ZDACW 37059\n [Z Motor]
17-03-18 00:02:47.928 -07 000000431 INF: FPGA: Recv ZDACW
17-03-18 00:02:47.938 -07 000000610 INF: FPGA: 'ZDACW 37059' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:47.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:02:47.938 -07 000000576 INF: FPGA: Recv ZDACR 37059
17-03-18 00:02:47.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:47.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:02:48.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:48.098 -07 000000586 INF: FPGA: Recv ZSGSRD 35703
17-03-18 00:02:48.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:48.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:48.108 -07 000000626 INF: FPGA: Recv ZSGSRD 35696
17-03-18 00:02:48.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:48.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:48.118 -07 000000586 INF: FPGA: Recv ZSGSRD 35698
17-03-18 00:02:48.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:48.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:48.128 -07 000000431 INF: FPGA: Recv ZSGSRD 35696
17-03-18 00:02:48.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:48.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:48.138 -07 000000586 INF: FPGA: Recv ZSGSRD 35696
17-03-18 00:02:48.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:48.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:48.148 -07 000000429 INF: FPGA: Recv ZSGSRD 35699
17-03-18 00:02:48.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:48.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:48.158 -07 000000586 INF: FPGA: Recv ZSGSRD 35694
17-03-18 00:02:48.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:48.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:48.168 -07 000000431 INF: FPGA: Recv ZSGSRD 35704
17-03-18 00:02:48.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:48.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:48.178 -07 000000626 INF: FPGA: Recv ZSGSRD 35698
17-03-18 00:02:48.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:48.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:48.188 -07 000000429 INF: FPGA: Recv ZSGSRD 35695
17-03-18 00:02:48.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:48.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:02:48.198 -07 000000586 INF: FPGA: Recv ZPIEZORD 31393
17-03-18 00:02:48.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:48.208 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.655 V. Piezo Error = -9.5 V.
17-03-18 00:02:48.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35698 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35697 (-168.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35694 (-168.8 uncal um), Max = 35704 (-168.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 00:02:48.208 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35698, posNoise = 6, negNoise = 4
17-03-18 00:02:48.208 -07 000000610 INF: Z Motor: After move to -0.169645, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:02:48.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 00:02:48.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:02:48.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:02:48.208 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:02:48.208 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:02:48.208 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:02:48.208 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:02:48.208 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:02:48.208 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:02:48.208 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:02:48.208 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:02:48.208 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:02:48.208 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:02:48.208 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 00:02:48.208 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:02:48.218 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:02:48.218 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:02:48.228 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 00:02:48.228 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 00:02:48.228 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 00:02:48.228 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:02:48.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37236 150\n [Camera]
17-03-18 00:02:48.438 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 00:02:49.338 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.993549,
17-03-18 00:02:49.468 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:02:49.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:02:49.468 -07 000000586 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:02:49.468 -07 000000586 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:02:49.468 -07 000000586 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 00:02:49.468 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:02:49.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:02:49.478 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:02:49.478 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:02:49.478 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2482896656, 0x0, 418435064) start.
17-03-18 00:02:49.658 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37236 1422
17-03-18 00:02:49.808 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:02:49.848 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2482896656, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 00:02:49.848 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 00:02:49.848 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:49.848 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:02:49.858 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 00:02:49.858 -07 000000586 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 00:02:49.858 -07 000000586 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 00:02:49.858 -07 000000586 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:49.868 -07 000000586 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:02:49.868 -07 000000586 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 00:02:50.308 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:02:50.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:02:50.318 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:02:50.318 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:02:50.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:02:50.318 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:02:50.318 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 00:02:50.318 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:02:50.318 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:02:50.318 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 00:02:50.508 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:02:50.508 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:02:50.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37236 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-18 00:02:50.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:02:50.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.169654877047718. ------
17-03-18 00:02:50.508 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:02:50.508 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17602 mm
17-03-18 00:02:50.508 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:02:50.508 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 00:02:50.508 -07 000000576 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 00:02:50.508 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:02:50.508 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38452, sync = True, waitForSettling = False)
17-03-18 00:02:50.508 -07 000000561 INF: Z Motor: Moving to -0.176022 mm, started at -0.169655 mm, distance = -6.37 um
17-03-18 00:02:50.518 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 00:02:50.518 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:50.518 -07 000000433 INF: FPGA: Recv YRDPOS 129482
17-03-18 00:02:50.638 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:02:50.638 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-18 00:02:50.638 -07 000000576 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:50.638 -07 000000576 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:02:50.638 -07 000000576 INF: Y Motor: Moving 1342 steps-19
17-03-18 00:02:50.648 -07 000000561 INF: FPGA: Xmit ZDACW 38452\n [Z Motor]
17-03-18 00:02:50.648 -07 000000429 INF: FPGA: Recv ZDACW
17-03-18 00:02:50.658 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:02:50.658 -07 000000561 INF: FPGA: 'ZDACW 38452' command took 0 ms to send, 0 ms to get response, and 140 ms overall
17-03-18 00:02:50.668 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:02:50.668 -07 000000448 INF: FPGA: Recv ZDACR 38452
17-03-18 00:02:50.678 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:02:50.678 -07 000000561 INF: Z Motor: MoveAbsStepped took 160 ms (did NOT wait for settling yet))
17-03-18 00:02:50.718 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 00:02:50.718 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 00:02:50.718 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:50.718 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 00:02:50.718 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 00:02:50.718 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:50.728 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:02:50.728 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:02:50.728 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 00:02:50.728 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 00:02:50.838 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:02:50.838 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 325 ms overall
17-03-18 00:02:51.028 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 00:02:51.028 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 00:02:51.078 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:51.078 -07 000000431 INF: FPGA: Recv YRDPOS 131187
17-03-18 00:02:51.088 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:51.088 -07 000000576 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:51.088 -07 000000576 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 00:02:51.088 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.839 mm, average velocity = 2.147 mm/sec
17-03-18 00:02:52.038 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:52.038 -07 000000431 INF: FPGA: Recv YRDPOS 131187
17-03-18 00:02:52.048 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:52.048 -07 000000576 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:52.068 -07 000000576 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:02:52.068 -07 000000576 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:02:52.068 -07 000000576 INF: Y Motor: Moved to 64.0562 after 1558 ms (table move)
17-03-18 00:02:52.078 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176022 mm (DAC = 38452)
17-03-18 00:02:52.078 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:52.078 -07 000000424 INF: FPGA: Recv ZSGSRD 36685
17-03-18 00:02:52.088 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:02:52.088 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:52.088 -07 000000431 INF: FPGA: Recv ZSGSRD 36695
17-03-18 00:02:52.098 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:52.098 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:52.098 -07 000000448 INF: FPGA: Recv ZSGSRD 36698
17-03-18 00:02:52.108 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:52.108 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:52.108 -07 000000547 INF: FPGA: Recv ZSGSRD 36691
17-03-18 00:02:52.118 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:52.118 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:52.118 -07 000000433 INF: FPGA: Recv ZSGSRD 36690
17-03-18 00:02:52.128 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:52.128 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:52.128 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:02:52.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:02:52.128 -07 000000586 INF: FPGA: Recv ZSGSRD 36691
17-03-18 00:02:52.138 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:52.138 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:52.138 -07 000000448 INF: FPGA: Recv ZSGSRD 36690
17-03-18 00:02:52.148 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:52.148 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:52.148 -07 000000586 INF: FPGA: Recv ZSGSRD 36684
17-03-18 00:02:52.158 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:52.158 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:52.158 -07 000000561 INF: FPGA: Recv ZSGSRD 36686
17-03-18 00:02:52.168 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:52.168 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:52.168 -07 000000586 INF: FPGA: Recv ZSGSRD 36689
17-03-18 00:02:52.178 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:52.178 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:02:52.178 -07 000000429 INF: FPGA: Recv ZPIEZORD 32765
17-03-18 00:02:52.188 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:52.188 -07 000000502 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.867 V. Piezo Error = -8.7 V.
17-03-18 00:02:52.188 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36690 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36690 (-175.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36684 (-175.1 uncal um), Max = 36698 (-175.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:02:52.188 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36690, posNoise = 8, negNoise = 6
17-03-18 00:02:52.188 -07 000000502 INF: Z Motor: After move to -0.176022, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:02:52.188 -07 000000502 INF: Z Motor: Settle wait time = 1561 ms, measure time = 109 ms (allowed 150 ms), total time = 1670 ms
17-03-18 00:02:52.188 -07 000000502 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 00:02:52.238 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1723 ms
17-03-18 00:02:52.238 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:02:52.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:02:52.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:02:52.238 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:02:52.238 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:02:52.238 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:02:52.238 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:02:52.238 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:02:52.238 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:02:52.248 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:02:52.248 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:02:52.258 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 00:02:52.258 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 00:02:52.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:02:52.298 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:02:52.598 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:02:52.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:02:52.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:02:52.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 00:02:52.638 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:02:52.638 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-18 00:02:52.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 00:02:52.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 00:02:52.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:52.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:02:52.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 00:02:52.838 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:02:52.838 -07 000000547 INF: Autofocus start
17-03-18 00:02:52.838 -07 000000547 INF: MeasureProfile start
17-03-18 00:02:52.838 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:02:52.848 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:02:52.848 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:02:52.848 -07 000000547 INF: MeasureProfile done
17-03-18 00:02:52.848 -07 000000547 INF: X=48  Z correction [um]=0.1739867
17-03-18 00:02:52.848 -07 000000547 INF: Autofocus finished
17-03-18 00:02:53.048 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:02:53.048 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:02:53.048 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.176027695492344. ----------
17-03-18 00:02:53.048 -07 000000610 INF: Cycle	81	Tile	6	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:02:53.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37003, sync = True, waitForSettling = True)
17-03-18 00:02:53.058 -07 000000610 INF: Z Motor: Moving to -0.169389 mm, started at -0.176028 mm, distance = 6.64 um
17-03-18 00:02:53.058 -07 000000610 INF: FPGA: Xmit ZDACW 37003\n [Z Motor]
17-03-18 00:02:53.058 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 00:02:53.068 -07 000000610 INF: FPGA: 'ZDACW 37003' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:02:53.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:02:53.068 -07 000000431 INF: FPGA: Recv ZDACR 37003
17-03-18 00:02:53.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:53.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:02:53.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:53.228 -07 000000501 INF: FPGA: Recv ZSGSRD 35663
17-03-18 00:02:53.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:53.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:53.238 -07 000000618 INF: FPGA: Recv ZSGSRD 35655
17-03-18 00:02:53.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:53.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:53.248 -07 000000431 INF: FPGA: Recv ZSGSRD 35658
17-03-18 00:02:53.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:53.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:53.258 -07 000000576 INF: FPGA: Recv ZSGSRD 35656
17-03-18 00:02:53.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:53.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:53.268 -07 000000502 INF: FPGA: Recv ZSGSRD 35657
17-03-18 00:02:53.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:53.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:53.278 -07 000000576 INF: FPGA: Recv ZSGSRD 35660
17-03-18 00:02:53.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:53.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:53.288 -07 000000502 INF: FPGA: Recv ZSGSRD 35658
17-03-18 00:02:53.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:53.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:53.298 -07 000000618 INF: FPGA: Recv ZSGSRD 35658
17-03-18 00:02:53.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:53.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:53.308 -07 000000448 INF: FPGA: Recv ZSGSRD 35658
17-03-18 00:02:53.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:53.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:53.318 -07 000000576 INF: FPGA: Recv ZSGSRD 35664
17-03-18 00:02:53.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:53.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:02:53.328 -07 000000431 INF: FPGA: Recv ZPIEZORD 31357
17-03-18 00:02:53.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:53.338 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.5 V.
17-03-18 00:02:53.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35659 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35658 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35655 (-168.5 uncal um), Max = 35664 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 00:02:53.338 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35659, posNoise = 5, negNoise = 4
17-03-18 00:02:53.338 -07 000000610 INF: Z Motor: After move to -0.169389, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:02:53.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 00:02:53.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:02:53.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:02:53.338 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:02:53.338 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:02:53.338 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:02:53.338 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:02:53.338 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:02:53.338 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:02:53.338 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:02:53.338 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:02:53.338 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 00:02:53.338 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:02:53.348 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:02:53.348 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:02:53.348 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 00:02:53.348 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:02:53.358 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:02:53.358 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:02:53.358 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 00:02:53.358 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:02:53.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37179 150\n [Camera]
17-03-18 00:02:53.558 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:02:54.598 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:02:54.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:02:54.598 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:02:54.598 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:02:54.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:02:54.608 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:02:54.608 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:02:54.608 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 00:02:54.608 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:02:54.608 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 00:02:54.698 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.999021,
17-03-18 00:02:54.788 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37179 1422
17-03-18 00:02:54.938 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:02:54.998 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 00:02:54.998 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 00:02:54.998 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:55.008 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 00:02:55.008 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 00:02:55.008 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:55.008 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:02:55.008 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 00:02:55.008 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:02:55.018 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 00:02:55.438 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:02:55.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:02:55.448 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:02:55.448 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:02:55.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:02:55.448 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:02:55.558 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:02:55.558 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 00:02:55.558 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:02:55.558 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 00:02:55.638 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 2266
17-03-18 00:02:55.638 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:02:55.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37179 150' command took 2 ms to send, 2263 ms to get response, and 2274 ms overall
17-03-18 00:02:55.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:02:55.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.169404332774189. ------
17-03-18 00:02:55.638 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:02:55.638 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17592 mm
17-03-18 00:02:55.638 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:02:55.648 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 00:02:55.648 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38430, sync = True, waitForSettling = False)
17-03-18 00:02:55.648 -07 000000448 INF: Z Motor: Moving to -0.175921 mm, started at -0.169404 mm, distance = -6.52 um
17-03-18 00:02:55.648 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:02:55.648 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 00:02:55.648 -07 000000618 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 00:02:55.648 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:55.648 -07 000000458 INF: FPGA: Recv YRDPOS 131188
17-03-18 00:02:55.658 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:02:55.658 -07 000000618 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:55.658 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:02:55.658 -07 000000618 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:02:55.658 -07 000000618 INF: Y Motor: Moving 1338 steps-13
17-03-18 00:02:55.668 -07 000000448 INF: FPGA: Xmit ZDACW 38430\n [Z Motor]
17-03-18 00:02:55.668 -07 000000415 INF: FPGA: Recv ZDACW
17-03-18 00:02:55.678 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:02:55.678 -07 000000448 INF: FPGA: 'ZDACW 38430' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 00:02:55.688 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:02:55.688 -07 000000415 INF: FPGA: Recv ZDACR 38430
17-03-18 00:02:55.698 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:02:55.698 -07 000000448 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 00:02:55.858 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:02:55.858 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 00:02:55.958 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 00:02:55.958 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 00:02:55.958 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:55.958 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 00:02:55.958 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 00:02:55.958 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:55.958 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:02:55.968 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:02:55.968 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 00:02:55.968 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-18 00:02:56.048 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 00:02:56.048 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 00:02:56.088 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:56.098 -07 000000576 INF: FPGA: Recv YRDPOS 132870
17-03-18 00:02:56.108 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:56.108 -07 000000618 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:56.108 -07 000000618 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 00:02:56.108 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.836 mm, average velocity = 2.139 mm/sec
17-03-18 00:02:57.058 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:02:57.058 -07 000000431 INF: FPGA: Recv YRDPOS 132870
17-03-18 00:02:57.068 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:57.068 -07 000000618 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:02:57.088 -07 000000618 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:02:57.088 -07 000000618 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:02:57.088 -07 000000618 INF: Y Motor: Moved to 64.8779 after 1446 ms (table move)
17-03-18 00:02:57.098 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175921 mm (DAC = 38430)
17-03-18 00:02:57.098 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:57.098 -07 000000502 INF: FPGA: Recv ZSGSRD 36679
17-03-18 00:02:57.108 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:02:57.108 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:57.108 -07 000000618 INF: FPGA: Recv ZSGSRD 36675
17-03-18 00:02:57.118 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:57.118 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:57.118 -07 000000576 INF: FPGA: Recv ZSGSRD 36672
17-03-18 00:02:57.128 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:57.128 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:57.128 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:02:57.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:02:57.128 -07 000000501 INF: FPGA: Recv ZSGSRD 36674
17-03-18 00:02:57.138 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:57.138 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:57.138 -07 000000476 INF: FPGA: Recv ZSGSRD 36676
17-03-18 00:02:57.148 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:57.148 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:57.148 -07 000000576 INF: FPGA: Recv ZSGSRD 36683
17-03-18 00:02:57.158 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:57.158 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:57.158 -07 000000576 INF: FPGA: Recv ZSGSRD 36679
17-03-18 00:02:57.168 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:57.168 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:57.168 -07 000000476 INF: FPGA: Recv ZSGSRD 36666
17-03-18 00:02:57.178 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:57.178 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:57.178 -07 000000476 INF: FPGA: Recv ZSGSRD 36672
17-03-18 00:02:57.188 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:57.188 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:57.188 -07 000000576 INF: FPGA: Recv ZSGSRD 36674
17-03-18 00:02:57.198 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:57.198 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:02:57.198 -07 000000502 INF: FPGA: Recv ZPIEZORD 32716
17-03-18 00:02:57.208 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:57.208 -07 000000429 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.864 V. Piezo Error = -8.8 V.
17-03-18 00:02:57.208 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36675 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36674 (-175.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36666 (-175.0 uncal um), Max = 36683 (-175.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 00:02:57.208 -07 000000429 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36675, posNoise = 8, negNoise = 9
17-03-18 00:02:57.208 -07 000000429 INF: Z Motor: After move to -0.175921, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:02:57.208 -07 000000429 INF: Z Motor: Settle wait time = 1450 ms, measure time = 109 ms (allowed 150 ms), total time = 1559 ms
17-03-18 00:02:57.208 -07 000000429 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 00:02:57.258 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 00:02:57.258 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:02:57.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:02:57.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:02:57.268 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:02:57.278 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:02:57.278 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:02:57.278 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:02:57.278 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:02:57.278 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:02:57.278 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 00:02:57.278 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:02:57.288 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 00:02:57.288 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 00:02:57.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:02:57.338 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:02:57.638 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:02:57.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:02:57.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:02:57.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-18 00:02:57.678 -07 000000448 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:02:57.678 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-18 00:02:57.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 385 ms overall
17-03-18 00:02:57.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 00:02:57.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:57.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 00:02:57.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:02:57.778 -07 000000502 INF: Autofocus start
17-03-18 00:02:57.778 -07 000000502 INF: MeasureProfile start
17-03-18 00:02:57.778 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:02:57.778 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:02:57.788 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:02:57.788 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:02:57.788 -07 000000502 INF: MeasureProfile done
17-03-18 00:02:57.788 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-18 00:02:57.788 -07 000000502 INF: Autofocus finished
17-03-18 00:02:57.988 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:02:57.988 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:02:57.988 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.175931332310218. ----------
17-03-18 00:02:57.988 -07 000000610 INF: Cycle	81	Tile	7	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:02:57.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36927, sync = True, waitForSettling = True)
17-03-18 00:02:57.998 -07 000000610 INF: Z Motor: Moving to -0.169041 mm, started at -0.175931 mm, distance = 6.89 um
17-03-18 00:02:57.998 -07 000000610 INF: FPGA: Xmit ZDACW 36927\n [Z Motor]
17-03-18 00:02:57.998 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 00:02:58.008 -07 000000610 INF: FPGA: 'ZDACW 36927' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:02:58.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:02:58.008 -07 000000502 INF: FPGA: Recv ZDACR 36927
17-03-18 00:02:58.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:58.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:02:58.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:58.168 -07 000000012 INF: FPGA: Recv ZSGSRD 35605
17-03-18 00:02:58.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:02:58.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:58.178 -07 000000502 INF: FPGA: Recv ZSGSRD 35606
17-03-18 00:02:58.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:58.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:58.188 -07 000000476 INF: FPGA: Recv ZSGSRD 35606
17-03-18 00:02:58.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:58.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:58.198 -07 000000502 INF: FPGA: Recv ZSGSRD 35604
17-03-18 00:02:58.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:58.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:58.208 -07 000000476 INF: FPGA: Recv ZSGSRD 35604
17-03-18 00:02:58.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:58.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:58.218 -07 000000561 INF: FPGA: Recv ZSGSRD 35610
17-03-18 00:02:58.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:58.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:58.228 -07 000000476 INF: FPGA: Recv ZSGSRD 35605
17-03-18 00:02:58.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:58.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:58.238 -07 000000501 INF: FPGA: Recv ZSGSRD 35600
17-03-18 00:02:58.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:58.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:58.248 -07 000000576 INF: FPGA: Recv ZSGSRD 35599
17-03-18 00:02:58.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:58.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:02:58.258 -07 000000501 INF: FPGA: Recv ZSGSRD 35607
17-03-18 00:02:58.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:58.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:02:58.268 -07 000000012 INF: FPGA: Recv ZPIEZORD 31278
17-03-18 00:02:58.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:02:58.278 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.635 V. Piezo Error = -9.5 V.
17-03-18 00:02:58.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35605 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35605 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35599 (-168.1 uncal um), Max = 35610 (-168.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:02:58.278 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35605, posNoise = 5, negNoise = 6
17-03-18 00:02:58.278 -07 000000610 INF: Z Motor: After move to -0.169041, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:02:58.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 00:02:58.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:02:58.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:02:58.278 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:02:58.278 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:02:58.278 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:02:58.278 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:02:58.278 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:02:58.278 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:02:58.278 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:02:58.278 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:02:58.278 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:02:58.278 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:02:58.288 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:02:58.288 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:02:58.288 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 00:02:58.288 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:02:58.298 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:02:58.298 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:02:58.298 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 00:02:58.298 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:02:58.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37103 150\n [Camera]
17-03-18 00:02:58.508 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:02:59.538 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:02:59.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:02:59.538 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:02:59.548 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:02:59.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:02:59.548 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:02:59.548 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:02:59.548 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 00:02:59.548 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:02:59.548 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 00:02:59.738 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37103 1425
17-03-18 00:02:59.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:02:59.948 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 00:02:59.948 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 00:02:59.948 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:59.948 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 00:02:59.948 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 00:02:59.948 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:02:59.948 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:02:59.948 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 00:02:59.948 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:02:59.958 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 00:03:00.058 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.019446,
17-03-18 00:03:00.388 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:03:00.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:03:00.388 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:00.388 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:03:00.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:03:00.388 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:00.388 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:00.388 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 00:03:00.398 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:00.398 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 00:03:00.578 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:03:00.578 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:03:00.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37103 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-18 00:03:00.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:03:00.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.169057425318534. ------
17-03-18 00:03:00.578 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:00.578 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17547 mm
17-03-18 00:03:00.578 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:03:00.588 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:00.588 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 00:03:00.588 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:03:00.588 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38330, sync = True, waitForSettling = False)
17-03-18 00:03:00.588 -07 000000012 INF: Z Motor: Moving to -0.175463 mm, started at -0.169057 mm, distance = -6.41 um
17-03-18 00:03:00.588 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 00:03:00.588 -07 000000476 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 00:03:00.598 -07 000000012 INF: FPGA: Xmit ZDACW 38330\n [Z Motor]
17-03-18 00:03:00.598 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 00:03:00.608 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:00.608 -07 000000012 INF: FPGA: 'ZDACW 38330' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 00:03:00.608 -07 000000501 INF: FPGA: Recv YRDPOS 132871
17-03-18 00:03:00.618 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 00:03:00.618 -07 000000476 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:00.618 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:00.618 -07 000000501 INF: FPGA: Recv ZDACR 38330
17-03-18 00:03:00.618 -07 000000476 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:03:00.618 -07 000000476 INF: Y Motor: Moving 1351 steps-30
17-03-18 00:03:00.628 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:03:00.628 -07 000000012 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 00:03:00.628 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:03:00.788 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:03:00.788 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 00:03:00.798 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 00:03:00.798 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 00:03:00.798 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:00.798 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 00:03:00.798 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 00:03:00.798 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:00.798 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 00:03:00.798 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 00:03:00.798 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 00:03:00.808 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 00:03:00.998 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 00:03:00.998 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 00:03:01.048 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:01.048 -07 000000501 INF: FPGA: Recv YRDPOS 134581
17-03-18 00:03:01.058 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:01.058 -07 000000476 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:01.058 -07 000000476 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 00:03:01.058 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.200 mm/sec
17-03-18 00:03:02.008 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:02.008 -07 000000576 INF: FPGA: Recv YRDPOS 134581
17-03-18 00:03:02.018 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:02.018 -07 000000476 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:02.048 -07 000000476 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:03:02.048 -07 000000476 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:03:02.048 -07 000000476 INF: Y Motor: Moved to 65.7134 after 1460 ms (table move)
17-03-18 00:03:02.048 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175463 mm (DAC = 38330)
17-03-18 00:03:02.048 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:02.058 -07 000000476 INF: FPGA: Recv ZSGSRD 36607
17-03-18 00:03:02.058 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 00:03:02.058 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:02.058 -07 000000576 INF: FPGA: Recv ZSGSRD 36599
17-03-18 00:03:02.068 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:03:02.068 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:02.068 -07 000000012 INF: FPGA: Recv ZSGSRD 36600
17-03-18 00:03:02.078 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:02.078 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:02.078 -07 000000429 INF: FPGA: Recv ZSGSRD 36609
17-03-18 00:03:02.088 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:02.088 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:02.088 -07 000000476 INF: FPGA: Recv ZSGSRD 36599
17-03-18 00:03:02.098 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:02.098 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:02.098 -07 000000618 INF: FPGA: Recv ZSGSRD 36594
17-03-18 00:03:02.108 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:02.108 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:02.108 -07 000000476 INF: FPGA: Recv ZSGSRD 36606
17-03-18 00:03:02.118 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:02.118 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:02.118 -07 000000012 INF: FPGA: Recv ZSGSRD 36602
17-03-18 00:03:02.128 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:02.128 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:02.128 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:03:02.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:03:02.128 -07 000000012 INF: FPGA: Recv ZSGSRD 36609
17-03-18 00:03:02.138 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:02.138 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:02.138 -07 000000618 INF: FPGA: Recv ZSGSRD 36604
17-03-18 00:03:02.148 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:02.148 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:02.148 -07 000000012 INF: FPGA: Recv ZPIEZORD 32662
17-03-18 00:03:02.158 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:02.158 -07 000000502 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.849 V. Piezo Error = -8.7 V.
17-03-18 00:03:02.158 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36603 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36603 (-174.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36594 (-174.5 uncal um), Max = 36609 (-174.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 00:03:02.158 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36603, posNoise = 6, negNoise = 9
17-03-18 00:03:02.158 -07 000000502 INF: Z Motor: After move to -0.175463, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:02.158 -07 000000502 INF: Z Motor: Settle wait time = 1465 ms, measure time = 102 ms (allowed 150 ms), total time = 1567 ms
17-03-18 00:03:02.158 -07 000000502 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 00:03:02.208 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 00:03:02.208 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:03:02.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:02.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:02.208 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:02.208 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:02.208 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:03:02.208 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:02.208 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 00:03:02.208 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:03:02.218 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:03:02.218 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:03:02.218 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 00:03:02.218 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 00:03:02.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:03:02.268 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:03:02.568 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:03:02.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:03:02.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:03:02.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 00:03:02.608 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:03:02.608 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 00:03:02.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 00:03:02.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:03:02.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:02.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:03:02.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:03:02.808 -07 000000012 INF: Autofocus start
17-03-18 00:03:02.808 -07 000000012 INF: MeasureProfile start
17-03-18 00:03:02.808 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:02.808 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:02.818 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:03:02.818 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:03:02.818 -07 000000012 INF: MeasureProfile done
17-03-18 00:03:02.818 -07 000000012 INF: X=48  Z correction [um]=0.1739867
17-03-18 00:03:02.818 -07 000000012 INF: Autofocus finished
17-03-18 00:03:03.018 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:03:03.018 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:03:03.018 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175468789036011. ----------
17-03-18 00:03:03.018 -07 000000610 INF: Cycle	81	Tile	8	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:03:03.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36881, sync = True, waitForSettling = True)
17-03-18 00:03:03.028 -07 000000610 INF: Z Motor: Moving to -0.168830 mm, started at -0.175469 mm, distance = 6.64 um
17-03-18 00:03:03.028 -07 000000610 INF: FPGA: Xmit ZDACW 36881\n [Z Motor]
17-03-18 00:03:03.028 -07 000000429 INF: FPGA: Recv ZDACW
17-03-18 00:03:03.038 -07 000000610 INF: FPGA: 'ZDACW 36881' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:03:03.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:03.038 -07 000000576 INF: FPGA: Recv ZDACR 36881
17-03-18 00:03:03.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:03.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:03:03.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:03.198 -07 000000476 INF: FPGA: Recv ZSGSRD 35572
17-03-18 00:03:03.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:03.208 -07 000000433 INF: FPGA: Recv ZSGSRD 35572
17-03-18 00:03:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:03.218 -07 000000618 INF: FPGA: Recv ZSGSRD 35570
17-03-18 00:03:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:03.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:03.228 -07 000000433 INF: FPGA: Recv ZSGSRD 35573
17-03-18 00:03:03.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:03.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:03.238 -07 000000502 INF: FPGA: Recv ZSGSRD 35572
17-03-18 00:03:03.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:03.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:03.248 -07 000000433 INF: FPGA: Recv ZSGSRD 35573
17-03-18 00:03:03.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:03.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:03.258 -07 000000618 INF: FPGA: Recv ZSGSRD 35568
17-03-18 00:03:03.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:03.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:03.268 -07 000000429 INF: FPGA: Recv ZSGSRD 35571
17-03-18 00:03:03.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:03.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:03.278 -07 000000424 INF: FPGA: Recv ZSGSRD 35574
17-03-18 00:03:03.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:03.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:03.288 -07 000000433 INF: FPGA: Recv ZSGSRD 35566
17-03-18 00:03:03.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:03.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:03.298 -07 000000576 INF: FPGA: Recv ZPIEZORD 31240
17-03-18 00:03:03.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:03.308 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -9.5 V.
17-03-18 00:03:03.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35571 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35572 (-168.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35566 (-167.9 uncal um), Max = 35574 (-168.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 00:03:03.308 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35571, posNoise = 3, negNoise = 5
17-03-18 00:03:03.308 -07 000000610 INF: Z Motor: After move to -0.168830, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:03.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 00:03:03.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:03.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:03.308 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:03.308 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:03:03.308 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:03:03.308 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:03.308 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:03.308 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:03:03.308 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:03.308 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:03:03.308 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:03:03.308 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:03:03.318 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:03:03.318 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:03:03.318 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:03:03.318 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:03:03.328 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 00:03:03.328 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 00:03:03.328 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 00:03:03.328 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 00:03:03.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37058 150\n [Camera]
17-03-18 00:03:03.528 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:03:04.568 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:03:04.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:03:04.568 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:04.568 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:03:04.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:03:04.568 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:04.568 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:04.568 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 00:03:04.578 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:04.578 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) start.
17-03-18 00:03:04.758 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37058 1423
17-03-18 00:03:04.908 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:03:04.968 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 00:03:04.968 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 00:03:04.968 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:04.978 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 00:03:04.978 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 00:03:04.978 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:04.978 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:04.978 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 00:03:04.978 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:04.988 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 00:03:05.408 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:03:05.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:03:05.408 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:05.518 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:03:05.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:03:05.518 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.008536,
17-03-18 00:03:05.518 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:05.518 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 00:03:05.518 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:05.528 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:05.528 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 00:03:05.598 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-18 00:03:05.598 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:03:05.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37058 150' command took 2 ms to send, 2268 ms to get response, and 2274 ms overall
17-03-18 00:03:05.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:03:05.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.168839002105714. ------
17-03-18 00:03:05.608 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:05.608 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17533 mm
17-03-18 00:03:05.608 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:03:05.608 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 00:03:05.608 -07 000000012 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 00:03:05.608 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38301, sync = True, waitForSettling = False)
17-03-18 00:03:05.608 -07 000000576 INF: Z Motor: Moving to -0.175331 mm, started at -0.168839 mm, distance = -6.49 um
17-03-18 00:03:05.608 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:05.618 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:03:05.618 -07 000000576 INF: FPGA: Xmit ZDACW 38301\n [Z Motor]
17-03-18 00:03:05.618 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 00:03:05.628 -07 000000576 INF: FPGA: 'ZDACW 38301' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 00:03:05.628 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:05.628 -07 000000547 INF: FPGA: Recv ZDACR 38301
17-03-18 00:03:05.638 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:05.638 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:05.638 -07 000000576 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 00:03:05.638 -07 000000476 INF: FPGA: Recv YRDPOS 134581
17-03-18 00:03:05.648 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:03:05.648 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 00:03:05.648 -07 000000012 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:05.648 -07 000000012 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:03:05.648 -07 000000012 INF: Y Motor: Moving 1343 steps-19
17-03-18 00:03:05.658 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:03:05.848 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:03:05.848 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 00:03:05.908 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 00:03:05.908 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 00:03:05.908 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:05.908 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:05.908 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 00:03:05.908 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 00:03:05.908 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:05.918 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:05.918 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-18 00:03:05.918 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 00:03:06.038 -07 000000586 INF: FPGA: Recv YMVTILE
17-03-18 00:03:06.038 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 391 ms overall
17-03-18 00:03:06.078 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:06.078 -07 000000561 INF: FPGA: Recv YRDPOS 136271
17-03-18 00:03:06.088 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:03:06.088 -07 000000012 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:06.088 -07 000000012 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 00:03:06.088 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.839 mm, average velocity = 2.146 mm/sec
17-03-18 00:03:07.038 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:07.038 -07 000000502 INF: FPGA: Recv YRDPOS 136271
17-03-18 00:03:07.048 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:07.048 -07 000000012 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:07.068 -07 000000012 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:03:07.068 -07 000000012 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:03:07.068 -07 000000012 INF: Y Motor: Moved to 66.5386 after 1461 ms (table move)
17-03-18 00:03:07.078 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175331 mm (DAC = 38301)
17-03-18 00:03:07.078 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:07.078 -07 000000502 INF: FPGA: Recv ZSGSRD 36587
17-03-18 00:03:07.088 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:03:07.088 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:07.088 -07 000000424 INF: FPGA: Recv ZSGSRD 36578
17-03-18 00:03:07.098 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:07.098 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:07.098 -07 000000626 INF: FPGA: Recv ZSGSRD 36581
17-03-18 00:03:07.108 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:07.108 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:07.108 -07 000000424 INF: FPGA: Recv ZSGSRD 36579
17-03-18 00:03:07.118 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:07.118 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:07.118 -07 000000626 INF: FPGA: Recv ZSGSRD 36585
17-03-18 00:03:07.128 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:07.128 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:07.128 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:03:07.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:03:07.128 -07 000000476 INF: FPGA: Recv ZSGSRD 36592
17-03-18 00:03:07.138 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:07.138 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:07.138 -07 000000626 INF: FPGA: Recv ZSGSRD 36588
17-03-18 00:03:07.148 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:07.148 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:07.148 -07 000000561 INF: FPGA: Recv ZSGSRD 36581
17-03-18 00:03:07.158 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:07.158 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:07.158 -07 000000626 INF: FPGA: Recv ZSGSRD 36582
17-03-18 00:03:07.168 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:07.168 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:07.168 -07 000000561 INF: FPGA: Recv ZSGSRD 36584
17-03-18 00:03:07.178 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:07.178 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:07.178 -07 000000626 INF: FPGA: Recv ZPIEZORD 32602
17-03-18 00:03:07.188 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:07.188 -07 000000501 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.844 V. Piezo Error = -8.8 V.
17-03-18 00:03:07.188 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36584 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36583 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36578 (-174.4 uncal um), Max = 36592 (-174.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:03:07.188 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36584, posNoise = 8, negNoise = 6
17-03-18 00:03:07.188 -07 000000501 INF: Z Motor: After move to -0.175331, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:07.188 -07 000000501 INF: Z Motor: Settle wait time = 1465 ms, measure time = 107 ms (allowed 150 ms), total time = 1572 ms
17-03-18 00:03:07.188 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 00:03:07.238 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 00:03:07.238 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:03:07.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:07.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:07.238 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:07.238 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:07.238 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:03:07.238 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:07.238 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:07.238 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:03:07.248 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:03:07.248 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:03:07.248 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 00:03:07.258 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 00:03:07.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:03:07.298 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:03:07.598 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:03:07.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:03:07.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:03:07.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-18 00:03:07.638 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:03:07.638 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 00:03:07.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 00:03:07.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:03:07.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:07.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:03:07.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:03:07.838 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:07.838 -07 000000501 INF: Autofocus start
17-03-18 00:03:07.838 -07 000000501 INF: MeasureProfile start
17-03-18 00:03:07.838 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:07.848 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:03:07.848 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:03:07.848 -07 000000501 INF: MeasureProfile done
17-03-18 00:03:07.848 -07 000000501 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 00:03:07.848 -07 000000501 INF: Autofocus finished
17-03-18 00:03:08.048 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:03:08.048 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:03:08.048 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175346729005318. ----------
17-03-18 00:03:08.048 -07 000000610 INF: Cycle	81	Tile	9	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:03:08.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36781, sync = True, waitForSettling = True)
17-03-18 00:03:08.058 -07 000000610 INF: Z Motor: Moving to -0.168373 mm, started at -0.175347 mm, distance = 6.97 um
17-03-18 00:03:08.058 -07 000000610 INF: FPGA: Xmit ZDACW 36781\n [Z Motor]
17-03-18 00:03:08.058 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 00:03:08.068 -07 000000610 INF: FPGA: 'ZDACW 36781' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:03:08.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:08.068 -07 000000626 INF: FPGA: Recv ZDACR 36781
17-03-18 00:03:08.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:08.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:03:08.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:08.228 -07 000000561 INF: FPGA: Recv ZSGSRD 35500
17-03-18 00:03:08.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:08.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:08.238 -07 000000501 INF: FPGA: Recv ZSGSRD 35501
17-03-18 00:03:08.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:08.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:08.248 -07 000000618 INF: FPGA: Recv ZSGSRD 35499
17-03-18 00:03:08.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:08.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:08.258 -07 000000561 INF: FPGA: Recv ZSGSRD 35501
17-03-18 00:03:08.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:08.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:08.268 -07 000000502 INF: FPGA: Recv ZSGSRD 35508
17-03-18 00:03:08.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:08.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:08.278 -07 000000424 INF: FPGA: Recv ZSGSRD 35497
17-03-18 00:03:08.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:08.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:08.288 -07 000000501 INF: FPGA: Recv ZSGSRD 35493
17-03-18 00:03:08.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:08.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:08.298 -07 000000561 INF: FPGA: Recv ZSGSRD 35500
17-03-18 00:03:08.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:08.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:08.308 -07 000000424 INF: FPGA: Recv ZSGSRD 35500
17-03-18 00:03:08.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:08.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:08.318 -07 000000618 INF: FPGA: Recv ZSGSRD 35501
17-03-18 00:03:08.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:08.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:08.328 -07 000000501 INF: FPGA: Recv ZPIEZORD 31139
17-03-18 00:03:08.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:08.338 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.612 V. Piezo Error = -9.6 V.
17-03-18 00:03:08.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35500 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35500 (-167.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35493 (-167.5 uncal um), Max = 35508 (-167.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 00:03:08.338 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35500, posNoise = 8, negNoise = 7
17-03-18 00:03:08.338 -07 000000610 INF: Z Motor: After move to -0.168373, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:08.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 00:03:08.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:08.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:08.338 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:08.338 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:03:08.338 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:08.338 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:03:08.338 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:03:08.338 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:08.338 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:08.338 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 00:03:08.338 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:03:08.338 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:03:08.348 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:03:08.348 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:03:08.348 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 00:03:08.348 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:03:08.358 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:03:08.358 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:03:08.358 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:03:08.358 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:03:08.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36958 150\n [Camera]
17-03-18 00:03:08.568 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:03:09.598 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:03:09.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:03:09.598 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:09.608 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:03:09.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:03:09.608 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:09.608 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:09.608 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-18 00:03:09.608 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:09.718 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-18 00:03:09.798 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36958 1422
17-03-18 00:03:09.948 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:03:09.998 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 00:03:09.998 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 00:03:09.998 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:09.998 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:09.998 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 00:03:10.108 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 00:03:10.108 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-18 00:03:10.108 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:10.118 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:10.118 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 00:03:10.448 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:03:10.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:03:10.448 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:10.448 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:03:10.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:03:10.448 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:10.448 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:10.448 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 00:03:10.458 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:10.458 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 00:03:10.638 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 2268
17-03-18 00:03:10.638 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:03:10.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36958 150' command took 2 ms to send, 2265 ms to get response, and 2275 ms overall
17-03-18 00:03:10.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:03:10.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168382883043649. ------
17-03-18 00:03:10.648 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17512 mm
17-03-18 00:03:10.648 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:03:10.648 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:10.648 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 00:03:10.648 -07 000000501 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 00:03:10.648 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38255, sync = True, waitForSettling = False)
17-03-18 00:03:10.648 -07 000000618 INF: Z Motor: Moving to -0.175120 mm, started at -0.168383 mm, distance = -6.74 um
17-03-18 00:03:10.648 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:10.658 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:03:10.658 -07 000000618 INF: FPGA: Xmit ZDACW 38255\n [Z Motor]
17-03-18 00:03:10.658 -07 000000431 INF: FPGA: Recv ZDACW
17-03-18 00:03:10.668 -07 000000618 INF: FPGA: 'ZDACW 38255' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 00:03:10.668 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:10.668 -07 000000431 INF: FPGA: Recv YRDPOS 136271
17-03-18 00:03:10.678 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 00:03:10.678 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:10.678 -07 000000501 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:03:10.678 -07 000000501 INF: Y Motor: Moving 1350 steps-29
17-03-18 00:03:10.678 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:03:10.688 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:10.688 -07 000000476 INF: FPGA: Recv ZDACR 38255
17-03-18 00:03:10.698 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:03:10.698 -07 000000618 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 00:03:10.698 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:03:10.848 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 00:03:10.848 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 00:03:10.848 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:10.848 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 00:03:10.848 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 00:03:10.848 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:10.858 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:03:10.858 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 00:03:10.858 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:03:10.858 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 00:03:10.878 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.978563,
17-03-18 00:03:10.878 -07 000000586 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:03:10.878 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 00:03:11.068 -07 000000586 INF: FPGA: Recv YMVTILE
17-03-18 00:03:11.068 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 00:03:11.118 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:11.118 -07 000000448 INF: FPGA: Recv YRDPOS 137977
17-03-18 00:03:11.128 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:11.128 -07 000000501 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:11.128 -07 000000501 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 00:03:11.128 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 00:03:12.078 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:12.078 -07 000000547 INF: FPGA: Recv YRDPOS 137977
17-03-18 00:03:12.088 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:12.088 -07 000000501 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:12.108 -07 000000501 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:03:12.108 -07 000000501 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:03:12.108 -07 000000501 INF: Y Motor: Moved to 67.3716 after 1460 ms (table move)
17-03-18 00:03:12.118 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175120 mm (DAC = 38255)
17-03-18 00:03:12.118 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:12.118 -07 000000626 INF: FPGA: Recv ZSGSRD 36555
17-03-18 00:03:12.128 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:03:12.128 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:12.128 -07 000000586 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:03:12.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:03:12.128 -07 000000424 INF: FPGA: Recv ZSGSRD 36557
17-03-18 00:03:12.138 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:12.138 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:12.138 -07 000000618 INF: FPGA: Recv ZSGSRD 36546
17-03-18 00:03:12.148 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:12.148 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:12.148 -07 000000458 INF: FPGA: Recv ZSGSRD 36560
17-03-18 00:03:12.158 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:12.158 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:12.158 -07 000000448 INF: FPGA: Recv ZSGSRD 36543
17-03-18 00:03:12.168 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:12.168 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:12.168 -07 000000424 INF: FPGA: Recv ZSGSRD 36548
17-03-18 00:03:12.178 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:12.178 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:12.178 -07 000000431 INF: FPGA: Recv ZSGSRD 36540
17-03-18 00:03:12.188 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:12.188 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:12.188 -07 000000458 INF: FPGA: Recv ZSGSRD 36549
17-03-18 00:03:12.198 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:12.198 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:12.198 -07 000000448 INF: FPGA: Recv ZSGSRD 36552
17-03-18 00:03:12.208 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:12.208 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:12.208 -07 000000415 INF: FPGA: Recv ZSGSRD 36551
17-03-18 00:03:12.218 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:12.218 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:12.218 -07 000000501 INF: FPGA: Recv ZPIEZORD 32601
17-03-18 00:03:12.228 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:12.228 -07 000000561 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.837 V. Piezo Error = -8.7 V.
17-03-18 00:03:12.228 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36550 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36550 (-174.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36540 (-174.2 uncal um), Max = 36560 (-174.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 00:03:12.228 -07 000000561 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36550, posNoise = 10, negNoise = 10
17-03-18 00:03:12.228 -07 000000561 INF: Z Motor: After move to -0.175120, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:12.228 -07 000000561 INF: Z Motor: Settle wait time = 1463 ms, measure time = 111 ms (allowed 150 ms), total time = 1574 ms
17-03-18 00:03:12.228 -07 000000561 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 00:03:12.268 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 00:03:12.268 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:03:12.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:12.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:12.268 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:12.268 -07 000000586 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:12.268 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:03:12.268 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:12.268 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:12.268 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:03:12.278 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 00:03:12.278 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:03:12.278 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 00:03:12.278 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 00:03:12.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:03:12.328 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:03:12.628 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:03:12.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:03:12.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:03:12.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-18 00:03:12.668 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:03:12.668 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 00:03:12.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 00:03:12.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:03:12.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:12.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:03:12.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:03:12.868 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:12.868 -07 000000415 INF: Autofocus start
17-03-18 00:03:12.868 -07 000000415 INF: MeasureProfile start
17-03-18 00:03:12.868 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:12.878 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:03:12.878 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:03:12.878 -07 000000415 INF: MeasureProfile done
17-03-18 00:03:12.878 -07 000000415 INF: X=16  Z correction [um]=0.01042744
17-03-18 00:03:12.878 -07 000000415 INF: Autofocus finished
17-03-18 00:03:13.078 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:03:13.078 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:03:13.078 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175128305792498. ----------
17-03-18 00:03:13.078 -07 000000610 INF: Cycle	81	Tile	10	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:03:13.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36770, sync = True, waitForSettling = True)
17-03-18 00:03:13.088 -07 000000610 INF: Z Motor: Moving to -0.168322 mm, started at -0.175128 mm, distance = 6.81 um
17-03-18 00:03:13.088 -07 000000610 INF: FPGA: Xmit ZDACW 36770\n [Z Motor]
17-03-18 00:03:13.088 -07 000000415 INF: FPGA: Recv ZDACW
17-03-18 00:03:13.098 -07 000000610 INF: FPGA: 'ZDACW 36770' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:13.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:13.098 -07 000000502 INF: FPGA: Recv ZDACR 36770
17-03-18 00:03:13.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:13.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:03:13.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:13.258 -07 000000424 INF: FPGA: Recv ZSGSRD 35496
17-03-18 00:03:13.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:13.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:13.268 -07 000000618 INF: FPGA: Recv ZSGSRD 35498
17-03-18 00:03:13.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:13.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:13.278 -07 000000431 INF: FPGA: Recv ZSGSRD 35487
17-03-18 00:03:13.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:13.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:13.288 -07 000000429 INF: FPGA: Recv ZSGSRD 35491
17-03-18 00:03:13.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:03:13.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:13.298 -07 000000561 INF: FPGA: Recv ZSGSRD 35491
17-03-18 00:03:13.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:13.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:13.308 -07 000000431 INF: FPGA: Recv ZSGSRD 35492
17-03-18 00:03:13.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:13.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:13.318 -07 000000433 INF: FPGA: Recv ZSGSRD 35494
17-03-18 00:03:13.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:13.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:13.328 -07 000000431 INF: FPGA: Recv ZSGSRD 35488
17-03-18 00:03:13.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:13.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:13.338 -07 000000501 INF: FPGA: Recv ZSGSRD 35491
17-03-18 00:03:13.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:13.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:13.348 -07 000000561 INF: FPGA: Recv ZSGSRD 35493
17-03-18 00:03:13.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:13.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:13.358 -07 000000433 INF: FPGA: Recv ZPIEZORD 31202
17-03-18 00:03:13.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:13.368 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.611 V. Piezo Error = -9.5 V.
17-03-18 00:03:13.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35492 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35492 (-167.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35487 (-167.4 uncal um), Max = 35498 (-167.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 00:03:13.368 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35492, posNoise = 6, negNoise = 5
17-03-18 00:03:13.368 -07 000000610 INF: Z Motor: After move to -0.168322, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:13.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 00:03:13.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:13.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:13.368 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:13.368 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:13.368 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:03:13.368 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:03:13.368 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:03:13.368 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:13.368 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:03:13.368 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:03:13.368 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:13.368 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:03:13.378 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 00:03:13.378 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:03:13.378 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 00:03:13.378 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:03:13.388 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:03:13.388 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:03:13.388 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:03:13.388 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:03:13.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36947 150\n [Camera]
17-03-18 00:03:13.588 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:03:14.628 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:03:14.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:03:14.628 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:14.638 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:03:14.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:03:14.638 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:14.638 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:14.638 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2201991440, 0x0, 391868352) start.
17-03-18 00:03:14.638 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:14.638 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 00:03:14.828 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36947 1422
17-03-18 00:03:14.978 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:03:15.038 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2201991440, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 00:03:15.038 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 00:03:15.038 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:15.038 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 00:03:15.038 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 00:03:15.038 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:15.038 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:03:15.038 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 00:03:15.038 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:03:15.048 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 00:03:15.478 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:03:15.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:03:15.478 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:15.478 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:03:15.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:03:15.478 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:15.478 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:15.478 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 00:03:15.488 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:15.488 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 00:03:15.668 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:03:15.668 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:03:15.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36947 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-18 00:03:15.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:03:15.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.168331489346515. ------
17-03-18 00:03:15.668 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:15.668 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17467 mm
17-03-18 00:03:15.668 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:03:15.678 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38158, sync = True, waitForSettling = False)
17-03-18 00:03:15.678 -07 000000431 INF: Z Motor: Moving to -0.174676 mm, started at -0.168331 mm, distance = -6.34 um
17-03-18 00:03:15.678 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 00:03:15.678 -07 000000448 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 00:03:15.678 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:15.678 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 00:03:15.678 -07 000000431 INF: FPGA: Xmit ZDACW 38158\n [Z Motor]
17-03-18 00:03:15.678 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 00:03:15.688 -07 000000431 INF: FPGA: 'ZDACW 38158' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:15.688 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:15.688 -07 000000586 INF: FPGA: Recv ZDACR 38158
17-03-18 00:03:15.698 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:15.698 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:15.698 -07 000000431 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-18 00:03:15.698 -07 000000586 INF: FPGA: Recv YRDPOS 137977
17-03-18 00:03:15.708 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:03:15.708 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:03:15.708 -07 000000448 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:15.708 -07 000000448 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:03:15.708 -07 000000448 INF: Y Motor: Moving 1346 steps-23
17-03-18 00:03:15.718 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:03:15.868 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 00:03:15.868 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 00:03:15.868 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:15.868 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 00:03:15.868 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 00:03:15.868 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:15.868 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:03:15.868 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:03:15.868 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 00:03:15.878 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 00:03:15.908 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:03:15.908 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 230 ms overall
17-03-18 00:03:16.088 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 00:03:16.088 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 00:03:16.138 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:16.138 -07 000000586 INF: FPGA: Recv YRDPOS 139683
17-03-18 00:03:16.148 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:16.148 -07 000000448 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:16.148 -07 000000448 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 00:03:16.148 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.841 mm, average velocity = 2.173 mm/sec
17-03-18 00:03:16.238 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.986717,
17-03-18 00:03:17.098 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:17.098 -07 000000586 INF: FPGA: Recv YRDPOS 139683
17-03-18 00:03:17.108 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:17.108 -07 000000448 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:17.128 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:03:17.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:03:17.128 -07 000000448 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:03:17.128 -07 000000448 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:03:17.128 -07 000000448 INF: Y Motor: Moved to 68.2046 after 1458 ms (table move)
17-03-18 00:03:17.138 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174676 mm (DAC = 38158)
17-03-18 00:03:17.138 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:17.138 -07 000000431 INF: FPGA: Recv ZSGSRD 36484
17-03-18 00:03:17.148 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:03:17.148 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:17.148 -07 000000501 INF: FPGA: Recv ZSGSRD 36484
17-03-18 00:03:17.158 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:17.158 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:17.158 -07 000000431 INF: FPGA: Recv ZSGSRD 36494
17-03-18 00:03:17.168 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:17.168 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:17.168 -07 000000431 INF: FPGA: Recv ZSGSRD 36480
17-03-18 00:03:17.178 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:17.178 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:17.178 -07 000000431 INF: FPGA: Recv ZSGSRD 36483
17-03-18 00:03:17.188 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:17.188 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:17.188 -07 000000431 INF: FPGA: Recv ZSGSRD 36476
17-03-18 00:03:17.198 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:17.198 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:17.198 -07 000000431 INF: FPGA: Recv ZSGSRD 36480
17-03-18 00:03:17.208 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:17.208 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:17.208 -07 000000586 INF: FPGA: Recv ZSGSRD 36483
17-03-18 00:03:17.218 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:17.218 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:17.218 -07 000000586 INF: FPGA: Recv ZSGSRD 36480
17-03-18 00:03:17.228 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:03:17.228 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:17.228 -07 000000431 INF: FPGA: Recv ZSGSRD 36490
17-03-18 00:03:17.238 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:17.238 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:17.238 -07 000000431 INF: FPGA: Recv ZPIEZORD 32500
17-03-18 00:03:17.248 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:17.248 -07 000000561 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.823 V. Piezo Error = -8.8 V.
17-03-18 00:03:17.248 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36483 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36483 (-173.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36476 (-173.8 uncal um), Max = 36494 (-173.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 00:03:17.248 -07 000000561 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36483, posNoise = 11, negNoise = 7
17-03-18 00:03:17.248 -07 000000561 INF: Z Motor: After move to -0.174676, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:17.248 -07 000000561 INF: Z Motor: Settle wait time = 1462 ms, measure time = 108 ms (allowed 150 ms), total time = 1570 ms
17-03-18 00:03:17.248 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 00:03:17.298 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 00:03:17.298 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:03:17.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:17.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:17.298 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:17.298 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:17.298 -07 000000586 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:03:17.298 -07 000000586 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:17.298 -07 000000586 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 00:03:17.298 -07 000000586 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:03:17.308 -07 000000586 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:03:17.308 -07 000000586 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:03:17.318 -07 000000586 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 00:03:17.318 -07 000000586 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 00:03:17.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:03:17.358 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:03:17.658 -07 000000586 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:03:17.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:03:17.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:03:17.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2237413704, 0x0, 559484976) start.
17-03-18 00:03:17.698 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:03:17.698 -07 000000586 INF: FPGA: Recv CAMSNAP
17-03-18 00:03:17.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 00:03:17.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2237413704, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:03:17.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:17.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:03:17.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 00:03:17.898 -07 000000433 INF: Autofocus start
17-03-18 00:03:17.898 -07 000000433 INF: MeasureProfile start
17-03-18 00:03:17.898 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:17.898 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:17.908 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:03:17.908 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:03:17.908 -07 000000433 INF: MeasureProfile done
17-03-18 00:03:17.908 -07 000000433 INF: X=48  Z correction [um]=0.1739867
17-03-18 00:03:17.908 -07 000000433 INF: Autofocus finished
17-03-18 00:03:18.108 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:03:18.108 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:03:18.108 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.174697883579. ----------
17-03-18 00:03:18.108 -07 000000610 INF: Cycle	81	Tile	11	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:03:18.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36708, sync = True, waitForSettling = True)
17-03-18 00:03:18.118 -07 000000610 INF: Z Motor: Moving to -0.168038 mm, started at -0.174698 mm, distance = 6.66 um
17-03-18 00:03:18.118 -07 000000610 INF: FPGA: Xmit ZDACW 36708\n [Z Motor]
17-03-18 00:03:18.118 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 00:03:18.128 -07 000000610 INF: FPGA: 'ZDACW 36708' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:03:18.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:18.128 -07 000000626 INF: FPGA: Recv ZDACR 36708
17-03-18 00:03:18.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:18.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:03:18.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:18.288 -07 000000626 INF: FPGA: Recv ZSGSRD 35445
17-03-18 00:03:18.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:18.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:18.298 -07 000000501 INF: FPGA: Recv ZSGSRD 35446
17-03-18 00:03:18.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:18.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:18.308 -07 000000501 INF: FPGA: Recv ZSGSRD 35447
17-03-18 00:03:18.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:18.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:18.318 -07 000000501 INF: FPGA: Recv ZSGSRD 35449
17-03-18 00:03:18.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:18.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:18.328 -07 000000501 INF: FPGA: Recv ZSGSRD 35451
17-03-18 00:03:18.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:18.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:18.338 -07 000000626 INF: FPGA: Recv ZSGSRD 35448
17-03-18 00:03:18.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:18.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:18.348 -07 000000626 INF: FPGA: Recv ZSGSRD 35450
17-03-18 00:03:18.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:18.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:18.358 -07 000000576 INF: FPGA: Recv ZSGSRD 35453
17-03-18 00:03:18.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:18.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:18.368 -07 000000448 INF: FPGA: Recv ZSGSRD 35446
17-03-18 00:03:18.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:18.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:18.378 -07 000000448 INF: FPGA: Recv ZSGSRD 35448
17-03-18 00:03:18.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:18.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:18.388 -07 000000618 INF: FPGA: Recv ZPIEZORD 31115
17-03-18 00:03:18.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:18.398 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.5 V.
17-03-18 00:03:18.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35448 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35448 (-167.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35445 (-167.2 uncal um), Max = 35453 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 00:03:18.398 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35448, posNoise = 5, negNoise = 3
17-03-18 00:03:18.398 -07 000000610 INF: Z Motor: After move to -0.168038, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:18.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 00:03:18.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:18.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:18.398 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:18.398 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:03:18.398 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:03:18.398 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:18.398 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:03:18.398 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:18.398 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:03:18.398 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:03:18.398 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:18.398 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:03:18.408 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:03:18.408 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:03:18.408 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:03:18.408 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:03:18.418 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:03:18.418 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:03:18.418 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:03:18.418 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 00:03:18.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36885 150\n [Camera]
17-03-18 00:03:18.628 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:03:19.658 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:03:19.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:03:19.658 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:19.658 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:19.658 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 00:03:19.668 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:03:19.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:03:19.668 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:19.668 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:19.668 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 00:03:19.858 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36885 1422
17-03-18 00:03:20.008 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:03:20.068 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 00:03:20.068 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 00:03:20.068 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:20.068 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 00:03:20.068 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 00:03:20.068 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:20.068 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:20.068 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 00:03:20.068 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:20.078 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 00:03:20.508 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:03:20.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:03:20.508 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:20.508 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:20.508 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 00:03:20.508 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:03:20.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:03:20.508 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:20.508 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:20.508 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 00:03:20.698 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:03:20.698 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:03:20.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36885 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-18 00:03:20.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:03:20.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168048824012277. ------
17-03-18 00:03:20.698 -07 000000586 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:20.698 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17457 mm
17-03-18 00:03:20.698 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:03:20.708 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 00:03:20.708 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38135, sync = True, waitForSettling = False)
17-03-18 00:03:20.708 -07 000000618 INF: Z Motor: Moving to -0.174571 mm, started at -0.168049 mm, distance = -6.52 um
17-03-18 00:03:20.708 -07 000000618 INF: FPGA: Xmit ZDACW 38135\n [Z Motor]
17-03-18 00:03:20.708 -07 000000502 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 00:03:20.718 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:20.908 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 00:03:20.908 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 00:03:20.908 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:20.908 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 00:03:20.908 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 00:03:20.908 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:20.918 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:20.918 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 00:03:20.918 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 00:03:20.918 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 00:03:20.928 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:20.928 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 00:03:20.928 -07 000000586 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 223 ms to get response, and 225 ms overall
17-03-18 00:03:20.928 -07 000000618 INF: FPGA: 'ZDACW 38135' command took 0 ms to send, 213 ms to get response, and 220 ms overall
17-03-18 00:03:20.928 -07 000000626 INF: FPGA: Recv YRDPOS 139684
17-03-18 00:03:20.928 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 203 ms to get response, and 220 ms overall
17-03-18 00:03:20.928 -07 000000502 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:20.928 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:20.928 -07 000000626 INF: FPGA: Recv ZDACR 38135
17-03-18 00:03:20.928 -07 000000502 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:03:20.928 -07 000000502 INF: Y Motor: Moving 1340 steps-16
17-03-18 00:03:20.938 -07 000000618 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:03:20.938 -07 000000618 INF: Z Motor: MoveAbsStepped took 227 ms (did NOT wait for settling yet))
17-03-18 00:03:20.938 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:03:20.948 -07 000000586 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:03:21.148 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:03:21.148 -07 000000586 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-18 00:03:21.318 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 00:03:21.318 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 382 ms overall
17-03-18 00:03:21.358 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:21.358 -07 000000433 INF: FPGA: Recv YRDPOS 141366
17-03-18 00:03:21.368 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:03:21.368 -07 000000502 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:21.368 -07 000000502 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 00:03:21.368 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.838 mm, average velocity = 2.188 mm/sec
17-03-18 00:03:21.598 -07 000000586 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.988112,
17-03-18 00:03:22.128 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:03:22.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:03:22.318 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:22.318 -07 000000626 INF: FPGA: Recv YRDPOS 141367
17-03-18 00:03:22.328 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:22.328 -07 000000502 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:22.348 -07 000000502 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:03:22.348 -07 000000502 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 00:03:22.348 -07 000000502 INF: Y Motor: Moved to 69.0269 after 1645 ms (table move)
17-03-18 00:03:22.358 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174571 mm (DAC = 38135)
17-03-18 00:03:22.358 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:22.358 -07 000000433 INF: FPGA: Recv ZSGSRD 36471
17-03-18 00:03:22.368 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:03:22.368 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:22.368 -07 000000424 INF: FPGA: Recv ZSGSRD 36461
17-03-18 00:03:22.378 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:22.378 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:22.378 -07 000000626 INF: FPGA: Recv ZSGSRD 36462
17-03-18 00:03:22.388 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:22.388 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:22.388 -07 000000502 INF: FPGA: Recv ZSGSRD 36461
17-03-18 00:03:22.398 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:22.398 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:22.398 -07 000000424 INF: FPGA: Recv ZSGSRD 36464
17-03-18 00:03:22.408 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:22.408 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:22.408 -07 000000476 INF: FPGA: Recv ZSGSRD 36468
17-03-18 00:03:22.418 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:22.418 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:22.418 -07 000000626 INF: FPGA: Recv ZSGSRD 36460
17-03-18 00:03:22.428 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:22.428 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:22.428 -07 000000502 INF: FPGA: Recv ZSGSRD 36464
17-03-18 00:03:22.438 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:22.438 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:22.438 -07 000000433 INF: FPGA: Recv ZSGSRD 36465
17-03-18 00:03:22.448 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:22.448 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:22.448 -07 000000476 INF: FPGA: Recv ZSGSRD 36464
17-03-18 00:03:22.458 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:22.458 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:22.458 -07 000000626 INF: FPGA: Recv ZPIEZORD 32512
17-03-18 00:03:22.468 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:22.468 -07 000000501 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.819 V. Piezo Error = -8.7 V.
17-03-18 00:03:22.468 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36464 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36464 (-173.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36460 (-173.7 uncal um), Max = 36471 (-173.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 00:03:22.468 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36464, posNoise = 7, negNoise = 4
17-03-18 00:03:22.468 -07 000000501 INF: Z Motor: After move to -0.174571, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:22.468 -07 000000501 INF: Z Motor: Settle wait time = 1649 ms, measure time = 108 ms (allowed 150 ms), total time = 1757 ms
17-03-18 00:03:22.468 -07 000000501 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 00:03:22.518 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1812 ms
17-03-18 00:03:22.518 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:03:22.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:22.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:22.518 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:22.518 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:22.518 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:03:22.518 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:22.528 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:22.528 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:03:22.528 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:03:22.528 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:03:22.528 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 00:03:22.528 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 00:03:22.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:03:22.578 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:03:22.878 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:03:22.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:03:22.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:03:22.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-18 00:03:22.918 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:03:22.918 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 00:03:22.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 00:03:23.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 00:03:23.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:23.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:03:23.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:03:23.118 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:23.118 -07 000000424 INF: Autofocus start
17-03-18 00:03:23.118 -07 000000424 INF: MeasureProfile start
17-03-18 00:03:23.118 -07 000000586 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:23.128 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:03:23.128 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:03:23.128 -07 000000424 INF: MeasureProfile done
17-03-18 00:03:23.128 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-18 00:03:23.128 -07 000000424 INF: Autofocus finished
17-03-18 00:03:23.328 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:03:23.328 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:03:23.328 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.174575823548307. ----------
17-03-18 00:03:23.328 -07 000000610 INF: Cycle	81	Tile	12	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:03:23.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36650, sync = True, waitForSettling = True)
17-03-18 00:03:23.338 -07 000000610 INF: Z Motor: Moving to -0.167773 mm, started at -0.174576 mm, distance = 6.80 um
17-03-18 00:03:23.338 -07 000000610 INF: FPGA: Xmit ZDACW 36650\n [Z Motor]
17-03-18 00:03:23.338 -07 000000476 INF: FPGA: Recv ZDACW
17-03-18 00:03:23.348 -07 000000610 INF: FPGA: 'ZDACW 36650' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:23.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:23.348 -07 000000501 INF: FPGA: Recv ZDACR 36650
17-03-18 00:03:23.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:23.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:03:23.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:23.508 -07 000000502 INF: FPGA: Recv ZSGSRD 35405
17-03-18 00:03:23.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:23.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:23.518 -07 000000424 INF: FPGA: Recv ZSGSRD 35412
17-03-18 00:03:23.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:23.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:23.528 -07 000000586 INF: FPGA: Recv ZSGSRD 35404
17-03-18 00:03:23.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:23.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:23.538 -07 000000433 INF: FPGA: Recv ZSGSRD 35406
17-03-18 00:03:23.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:23.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:23.548 -07 000000501 INF: FPGA: Recv ZSGSRD 35407
17-03-18 00:03:23.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:23.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:23.558 -07 000000618 INF: FPGA: Recv ZSGSRD 35409
17-03-18 00:03:23.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:23.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:23.568 -07 000000424 INF: FPGA: Recv ZSGSRD 35406
17-03-18 00:03:23.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:23.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:23.578 -07 000000626 INF: FPGA: Recv ZSGSRD 35406
17-03-18 00:03:23.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:23.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:23.588 -07 000000586 INF: FPGA: Recv ZSGSRD 35409
17-03-18 00:03:23.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:23.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:23.598 -07 000000424 INF: FPGA: Recv ZSGSRD 35410
17-03-18 00:03:23.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:03:23.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:23.608 -07 000000501 INF: FPGA: Recv ZPIEZORD 31077
17-03-18 00:03:23.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:23.618 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -9.5 V.
17-03-18 00:03:23.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35407 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35406 (-166.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35404 (-166.9 uncal um), Max = 35412 (-166.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 00:03:23.618 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35407, posNoise = 5, negNoise = 3
17-03-18 00:03:23.618 -07 000000610 INF: Z Motor: After move to -0.167773, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:23.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 00:03:23.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:23.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:23.618 -07 000000586 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:23.618 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:23.618 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:03:23.618 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:23.618 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:03:23.618 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:03:23.618 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:23.618 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:03:23.618 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:03:23.618 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:03:23.618 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 00:03:23.618 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:03:23.628 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:03:23.628 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:03:23.638 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:03:23.638 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:03:23.638 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:03:23.638 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:03:23.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36826 150\n [Camera]
17-03-18 00:03:23.838 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:03:24.878 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:03:24.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:03:24.878 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:24.878 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:24.878 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 00:03:24.888 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:03:24.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:03:24.888 -07 000000586 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:24.888 -07 000000586 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:24.888 -07 000000586 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 00:03:25.078 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36826 1422
17-03-18 00:03:25.218 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:03:25.278 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 00:03:25.278 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 00:03:25.278 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:25.288 -07 000000586 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 00:03:25.288 -07 000000586 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 00:03:25.288 -07 000000586 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:25.288 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:25.288 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 00:03:25.288 -07 000000586 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:25.298 -07 000000586 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 00:03:25.728 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:03:25.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:03:25.728 -07 000000586 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:25.728 -07 000000586 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:25.728 -07 000000586 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 00:03:25.728 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:03:25.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:03:25.728 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:25.728 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:25.728 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 00:03:25.918 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-18 00:03:25.918 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:03:25.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36826 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-18 00:03:25.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:03:25.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.167785431314465. ------
17-03-18 00:03:25.918 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17418 mm
17-03-18 00:03:25.918 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:03:25.928 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 00:03:25.928 -07 000000424 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-18 00:03:25.928 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38050, sync = True, waitForSettling = False)
17-03-18 00:03:25.928 -07 000000618 INF: Z Motor: Moving to -0.174182 mm, started at -0.167785 mm, distance = -6.40 um
17-03-18 00:03:25.938 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:25.948 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:25.958 -07 000000618 INF: FPGA: Xmit ZDACW 38050\n [Z Motor]
17-03-18 00:03:26.128 -07 000000586 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 00:03:26.128 -07 000000586 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 00:03:26.128 -07 000000586 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:26.128 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 00:03:26.128 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 00:03:26.128 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:26.138 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:26.138 -07 000000586 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 00:03:26.138 -07 000000586 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 00:03:26.138 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 00:03:26.148 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:26.148 -07 000000415 INF: FPGA: Recv YRDPOS 141367
17-03-18 00:03:26.148 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 209 ms to get response, and 231 ms overall
17-03-18 00:03:26.148 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 199 ms to get response, and 228 ms overall
17-03-18 00:03:26.148 -07 000000415 INF: FPGA: Recv ZDACW
17-03-18 00:03:26.158 -07 000000618 INF: FPGA: 'ZDACW 38050' command took 0 ms to send, 189 ms to get response, and 228 ms overall
17-03-18 00:03:26.158 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:26.158 -07 000000424 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:26.158 -07 000000424 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:03:26.158 -07 000000424 INF: Y Motor: Moving 1353 steps-33
17-03-18 00:03:26.158 -07 000000415 INF: FPGA: Recv ZDACR 38050
17-03-18 00:03:26.168 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:03:26.168 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:26.168 -07 000000618 INF: Z Motor: MoveAbsStepped took 238 ms (did NOT wait for settling yet))
17-03-18 00:03:26.178 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:03:26.368 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:03:26.368 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 00:03:26.548 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-18 00:03:26.548 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 00:03:26.598 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:26.598 -07 000000415 INF: FPGA: Recv YRDPOS 143078
17-03-18 00:03:26.608 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:03:26.608 -07 000000424 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:26.608 -07 000000424 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 00:03:26.608 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-18 00:03:26.958 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.990831,
17-03-18 00:03:27.128 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:03:27.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:03:27.558 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:27.558 -07 000000618 INF: FPGA: Recv YRDPOS 143079
17-03-18 00:03:27.568 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:27.568 -07 000000424 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:27.588 -07 000000424 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:03:27.588 -07 000000424 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 00:03:27.588 -07 000000424 INF: Y Motor: Moved to 69.8628 after 1666 ms (table move)
17-03-18 00:03:27.598 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174182 mm (DAC = 38050)
17-03-18 00:03:27.598 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:27.598 -07 000000502 INF: FPGA: Recv ZSGSRD 36402
17-03-18 00:03:27.608 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:27.608 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:27.608 -07 000000424 INF: FPGA: Recv ZSGSRD 36404
17-03-18 00:03:27.618 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:27.618 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:27.618 -07 000000424 INF: FPGA: Recv ZSGSRD 36409
17-03-18 00:03:27.628 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:27.628 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:27.628 -07 000000415 INF: FPGA: Recv ZSGSRD 36404
17-03-18 00:03:27.638 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:27.638 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:27.638 -07 000000618 INF: FPGA: Recv ZSGSRD 36408
17-03-18 00:03:27.648 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:27.648 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:27.648 -07 000000502 INF: FPGA: Recv ZSGSRD 36404
17-03-18 00:03:27.658 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:27.658 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:27.658 -07 000000415 INF: FPGA: Recv ZSGSRD 36400
17-03-18 00:03:27.668 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:27.668 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:27.668 -07 000000618 INF: FPGA: Recv ZSGSRD 36399
17-03-18 00:03:27.678 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:27.678 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:27.678 -07 000000618 INF: FPGA: Recv ZSGSRD 36406
17-03-18 00:03:27.688 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:27.688 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:27.688 -07 000000502 INF: FPGA: Recv ZSGSRD 36409
17-03-18 00:03:27.698 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:27.698 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:27.698 -07 000000415 INF: FPGA: Recv ZPIEZORD 32389
17-03-18 00:03:27.708 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:27.708 -07 000000433 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.806 V. Piezo Error = -8.9 V.
17-03-18 00:03:27.708 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36404 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36404 (-173.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36399 (-173.3 uncal um), Max = 36409 (-173.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 00:03:27.708 -07 000000433 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36404, posNoise = 5, negNoise = 5
17-03-18 00:03:27.708 -07 000000433 INF: Z Motor: After move to -0.174182, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:27.708 -07 000000433 INF: Z Motor: Settle wait time = 1669 ms, measure time = 110 ms (allowed 150 ms), total time = 1779 ms
17-03-18 00:03:27.708 -07 000000433 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 00:03:27.748 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1821 ms
17-03-18 00:03:27.748 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:03:27.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:27.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:27.748 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:27.748 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:03:27.748 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:27.748 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:27.748 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 00:03:27.748 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:03:27.758 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:03:27.758 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:03:27.768 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 00:03:27.768 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 00:03:27.768 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:03:27.818 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:03:28.118 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:03:28.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:03:28.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:03:28.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-18 00:03:28.158 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:03:28.158 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-18 00:03:28.158 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 00:03:28.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:03:28.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:28.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 00:03:28.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:03:28.258 -07 000000618 INF: Autofocus start
17-03-18 00:03:28.258 -07 000000618 INF: MeasureProfile start
17-03-18 00:03:28.258 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:28.258 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:28.268 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:03:28.268 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:03:28.268 -07 000000618 INF: MeasureProfile done
17-03-18 00:03:28.268 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-18 00:03:28.268 -07 000000618 INF: Autofocus finished
17-03-18 00:03:28.468 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:03:28.468 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 00:03:28.468 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174190370819801. ----------
17-03-18 00:03:28.468 -07 000000610 INF: Cycle	81	Tile	13	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:03:28.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36565, sync = True, waitForSettling = True)
17-03-18 00:03:28.478 -07 000000610 INF: Z Motor: Moving to -0.167384 mm, started at -0.174190 mm, distance = 6.81 um
17-03-18 00:03:28.478 -07 000000610 INF: FPGA: Xmit ZDACW 36565\n [Z Motor]
17-03-18 00:03:28.478 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 00:03:28.488 -07 000000610 INF: FPGA: 'ZDACW 36565' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:03:28.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:28.488 -07 000000431 INF: FPGA: Recv ZDACR 36565
17-03-18 00:03:28.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:28.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:03:28.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:28.648 -07 000000458 INF: FPGA: Recv ZSGSRD 35344
17-03-18 00:03:28.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:28.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:28.658 -07 000000448 INF: FPGA: Recv ZSGSRD 35350
17-03-18 00:03:28.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:28.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:28.668 -07 000000547 INF: FPGA: Recv ZSGSRD 35347
17-03-18 00:03:28.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:28.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:28.678 -07 000000502 INF: FPGA: Recv ZSGSRD 35344
17-03-18 00:03:28.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:28.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:28.688 -07 000000415 INF: FPGA: Recv ZSGSRD 35346
17-03-18 00:03:28.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:28.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:28.698 -07 000000431 INF: FPGA: Recv ZSGSRD 35351
17-03-18 00:03:28.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:28.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:28.708 -07 000000424 INF: FPGA: Recv ZSGSRD 35344
17-03-18 00:03:28.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:28.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:28.718 -07 000000431 INF: FPGA: Recv ZSGSRD 35345
17-03-18 00:03:28.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:28.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:28.728 -07 000000424 INF: FPGA: Recv ZSGSRD 35346
17-03-18 00:03:28.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:28.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:28.738 -07 000000547 INF: FPGA: Recv ZSGSRD 35348
17-03-18 00:03:28.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:28.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:28.748 -07 000000415 INF: FPGA: Recv ZPIEZORD 30973
17-03-18 00:03:28.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:28.758 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.579 V. Piezo Error = -9.6 V.
17-03-18 00:03:28.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35346 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35346 (-166.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35344 (-166.5 uncal um), Max = 35351 (-166.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 00:03:28.758 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35346, posNoise = 5, negNoise = 2
17-03-18 00:03:28.758 -07 000000610 INF: Z Motor: After move to -0.167384, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:28.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 00:03:28.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:28.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:28.758 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:28.758 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:28.758 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:03:28.758 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:28.758 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:03:28.758 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:03:28.758 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:28.758 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:03:28.758 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:03:28.758 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:03:28.758 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 00:03:28.758 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:03:28.768 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:03:28.768 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:03:28.778 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 00:03:28.778 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 00:03:28.778 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 00:03:28.778 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 00:03:28.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36742 150\n [Camera]
17-03-18 00:03:28.978 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:03:30.018 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:03:30.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:03:30.018 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:30.018 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:30.018 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 00:03:30.018 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:03:30.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:03:30.018 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:30.018 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:30.018 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 00:03:30.208 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36742 1422
17-03-18 00:03:30.358 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:03:30.418 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 00:03:30.418 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 00:03:30.418 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:30.418 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 00:03:30.418 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 00:03:30.418 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:30.428 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:03:30.428 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 00:03:30.428 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 00:03:30.438 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 00:03:30.858 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:03:30.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:03:30.858 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:30.858 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:30.858 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 00:03:30.858 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:03:30.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:03:30.868 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:30.988 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:30.988 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 00:03:31.048 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:03:31.048 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:03:31.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36742 150' command took 2 ms to send, 2268 ms to get response, and 2272 ms overall
17-03-18 00:03:31.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:03:31.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167393554373818. ------
17-03-18 00:03:31.058 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:31.058 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17352 mm
17-03-18 00:03:31.058 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:03:31.058 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 00:03:31.058 -07 000000415 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 00:03:31.058 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:31.058 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37904, sync = True, waitForSettling = False)
17-03-18 00:03:31.058 -07 000000502 INF: Z Motor: Moving to -0.173513 mm, started at -0.167394 mm, distance = -6.12 um
17-03-18 00:03:31.068 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:03:31.068 -07 000000502 INF: FPGA: Xmit ZDACW 37904\n [Z Motor]
17-03-18 00:03:31.068 -07 000000431 INF: FPGA: Recv ZDACW
17-03-18 00:03:31.078 -07 000000502 INF: FPGA: 'ZDACW 37904' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:31.078 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:31.078 -07 000000448 INF: FPGA: Recv YRDPOS 143079
17-03-18 00:03:31.088 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:03:31.088 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 00:03:31.088 -07 000000415 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:31.088 -07 000000415 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:03:31.088 -07 000000415 INF: Y Motor: Moving 1344 steps-21
17-03-18 00:03:31.098 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:31.098 -07 000000431 INF: FPGA: Recv ZDACR 37904
17-03-18 00:03:31.108 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:03:31.108 -07 000000502 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 00:03:31.108 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:03:31.258 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 00:03:31.258 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 00:03:31.258 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:31.268 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 00:03:31.268 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 00:03:31.288 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:03:31.288 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 00:03:31.378 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 00:03:31.378 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 00:03:31.378 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:31.378 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 00:03:31.388 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 523 ms.
17-03-18 00:03:31.488 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-18 00:03:31.488 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 00:03:31.528 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:31.528 -07 000000547 INF: FPGA: Recv YRDPOS 144768
17-03-18 00:03:31.538 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:03:31.538 -07 000000415 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:31.538 -07 000000415 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 00:03:31.538 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.105 mm/sec
17-03-18 00:03:32.128 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:03:32.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:03:32.318 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.016692,
17-03-18 00:03:32.488 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:32.488 -07 000000547 INF: FPGA: Recv YRDPOS 144768
17-03-18 00:03:32.498 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:32.498 -07 000000415 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:32.518 -07 000000415 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:03:32.518 -07 000000415 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:03:32.518 -07 000000415 INF: Y Motor: Moved to 70.6875 after 1460 ms (table move)
17-03-18 00:03:32.528 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173513 mm (DAC = 37904)
17-03-18 00:03:32.528 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:32.528 -07 000000424 INF: FPGA: Recv ZSGSRD 36307
17-03-18 00:03:32.538 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:03:32.538 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:32.538 -07 000000547 INF: FPGA: Recv ZSGSRD 36298
17-03-18 00:03:32.548 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:32.548 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:32.548 -07 000000547 INF: FPGA: Recv ZSGSRD 36294
17-03-18 00:03:32.558 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:32.558 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:32.558 -07 000000547 INF: FPGA: Recv ZSGSRD 36299
17-03-18 00:03:32.568 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:32.568 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:32.568 -07 000000415 INF: FPGA: Recv ZSGSRD 36299
17-03-18 00:03:32.578 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:32.578 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:32.578 -07 000000424 INF: FPGA: Recv ZSGSRD 36299
17-03-18 00:03:32.588 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:32.588 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:32.588 -07 000000415 INF: FPGA: Recv ZSGSRD 36303
17-03-18 00:03:32.598 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:32.598 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:32.598 -07 000000415 INF: FPGA: Recv ZSGSRD 36299
17-03-18 00:03:32.608 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:32.608 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:32.608 -07 000000424 INF: FPGA: Recv ZSGSRD 36308
17-03-18 00:03:32.618 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:32.618 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:32.618 -07 000000424 INF: FPGA: Recv ZSGSRD 36302
17-03-18 00:03:32.628 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:32.628 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:32.628 -07 000000415 INF: FPGA: Recv ZPIEZORD 32275
17-03-18 00:03:32.638 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:32.638 -07 000000433 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.784 V. Piezo Error = -8.9 V.
17-03-18 00:03:32.638 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36301 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36299 (-172.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36294 (-172.6 uncal um), Max = 36308 (-172.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 00:03:32.638 -07 000000433 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36301, posNoise = 7, negNoise = 7
17-03-18 00:03:32.638 -07 000000433 INF: Z Motor: After move to -0.173513, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:32.638 -07 000000433 INF: Z Motor: Settle wait time = 1462 ms, measure time = 109 ms (allowed 150 ms), total time = 1571 ms
17-03-18 00:03:32.638 -07 000000433 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 00:03:32.688 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 00:03:32.688 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:03:32.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:32.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:32.688 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:32.688 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:32.688 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:03:32.688 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:32.688 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:32.688 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:03:32.698 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 00:03:32.698 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:03:32.698 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 00:03:32.698 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 00:03:32.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:03:32.748 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:03:33.048 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:03:33.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:03:33.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:03:33.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 00:03:33.088 -07 000000433 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:03:33.088 -07 000000586 INF: FPGA: Recv CAMSNAP
17-03-18 00:03:33.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 00:03:33.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 00:03:33.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:33.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:03:33.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:03:33.288 -07 000000586 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:33.288 -07 000000547 INF: Autofocus start
17-03-18 00:03:33.288 -07 000000547 INF: MeasureProfile start
17-03-18 00:03:33.288 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:33.298 -07 000000586 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:03:33.298 -07 000000586 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:03:33.298 -07 000000547 INF: MeasureProfile done
17-03-18 00:03:33.298 -07 000000547 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 00:03:33.298 -07 000000547 INF: Autofocus finished
17-03-18 00:03:33.498 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:03:33.498 -07 000000586 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:03:33.498 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.173528676969199. ----------
17-03-18 00:03:33.498 -07 000000610 INF: Cycle	81	Tile	14	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:03:33.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36384, sync = True, waitForSettling = True)
17-03-18 00:03:33.508 -07 000000610 INF: Z Motor: Moving to -0.166555 mm, started at -0.173529 mm, distance = 6.97 um
17-03-18 00:03:33.508 -07 000000610 INF: FPGA: Xmit ZDACW 36384\n [Z Motor]
17-03-18 00:03:33.508 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 00:03:33.518 -07 000000610 INF: FPGA: 'ZDACW 36384' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:03:33.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:33.518 -07 000000415 INF: FPGA: Recv ZDACR 36384
17-03-18 00:03:33.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:33.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:03:33.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:33.678 -07 000000626 INF: FPGA: Recv ZSGSRD 35220
17-03-18 00:03:33.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:33.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:33.688 -07 000000424 INF: FPGA: Recv ZSGSRD 35219
17-03-18 00:03:33.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:33.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:33.698 -07 000000501 INF: FPGA: Recv ZSGSRD 35211
17-03-18 00:03:33.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:33.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:33.708 -07 000000415 INF: FPGA: Recv ZSGSRD 35216
17-03-18 00:03:33.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:33.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:33.718 -07 000000476 INF: FPGA: Recv ZSGSRD 35218
17-03-18 00:03:33.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:33.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:33.728 -07 000000415 INF: FPGA: Recv ZSGSRD 35215
17-03-18 00:03:33.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:33.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:33.738 -07 000000501 INF: FPGA: Recv ZSGSRD 35218
17-03-18 00:03:33.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:33.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:33.748 -07 000000476 INF: FPGA: Recv ZSGSRD 35217
17-03-18 00:03:33.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:33.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:33.758 -07 000000501 INF: FPGA: Recv ZSGSRD 35217
17-03-18 00:03:33.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:33.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:33.768 -07 000000415 INF: FPGA: Recv ZSGSRD 35217
17-03-18 00:03:33.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:33.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:33.778 -07 000000626 INF: FPGA: Recv ZPIEZORD 30823
17-03-18 00:03:33.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:33.788 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.7 V.
17-03-18 00:03:33.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35217 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35217 (-165.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35211 (-165.7 uncal um), Max = 35220 (-165.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:03:33.788 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35217, posNoise = 3, negNoise = 6
17-03-18 00:03:33.788 -07 000000610 INF: Z Motor: After move to -0.166555, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:33.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 00:03:33.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:33.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:33.788 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:33.788 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:03:33.788 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:33.788 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:03:33.788 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:03:33.788 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:33.788 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:33.788 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:03:33.788 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:03:33.788 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:03:33.798 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 00:03:33.798 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:03:33.798 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:03:33.798 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:03:33.808 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 00:03:33.808 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 00:03:33.808 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 00:03:33.808 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 00:03:33.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36561 150\n [Camera]
17-03-18 00:03:34.008 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:03:35.048 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:03:35.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:03:35.048 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:35.048 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:03:35.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:03:35.048 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:35.058 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:35.058 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 00:03:35.058 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:35.058 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 00:03:35.248 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36561 1422
17-03-18 00:03:35.388 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:03:35.448 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 00:03:35.448 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 00:03:35.448 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:35.458 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 00:03:35.458 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 00:03:35.458 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:35.458 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:35.458 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 00:03:35.458 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:35.468 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 00:03:35.888 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:03:35.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:03:35.888 -07 000000586 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:35.898 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:03:35.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:03:35.898 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:36.018 -07 000000586 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:36.018 -07 000000586 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 00:03:36.018 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:36.018 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 00:03:36.078 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:03:36.088 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:03:36.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36561 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall
17-03-18 00:03:36.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:03:36.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.166564831007531. ------
17-03-18 00:03:36.088 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:36.088 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17308 mm
17-03-18 00:03:36.088 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:03:36.088 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:36.088 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 00:03:36.088 -07 000000476 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 00:03:36.088 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37809, sync = True, waitForSettling = False)
17-03-18 00:03:36.088 -07 000000424 INF: Z Motor: Moving to -0.173079 mm, started at -0.166565 mm, distance = -6.51 um
17-03-18 00:03:36.098 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:03:36.098 -07 000000424 INF: FPGA: Xmit ZDACW 37809\n [Z Motor]
17-03-18 00:03:36.098 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 00:03:36.108 -07 000000424 INF: FPGA: 'ZDACW 37809' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 00:03:36.108 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:36.108 -07 000000626 INF: FPGA: Recv YRDPOS 144769
17-03-18 00:03:36.118 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 00:03:36.118 -07 000000476 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:36.118 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:03:36.118 -07 000000476 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:03:36.118 -07 000000476 INF: Y Motor: Moving 1351 steps-31
17-03-18 00:03:36.128 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:36.128 -07 000000012 INF: FPGA: Recv ZDACR 37809
17-03-18 00:03:36.138 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:03:36.138 -07 000000424 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 00:03:36.138 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:03:36.318 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:03:36.318 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 00:03:36.408 -07 000000586 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 00:03:36.408 -07 000000586 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 00:03:36.408 -07 000000586 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:36.418 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 00:03:36.418 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 00:03:36.418 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:36.418 -07 000000586 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:03:36.418 -07 000000586 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 00:03:36.418 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:03:36.428 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-18 00:03:36.508 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-18 00:03:36.508 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 00:03:36.558 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:36.558 -07 000000415 INF: FPGA: Recv YRDPOS 146469
17-03-18 00:03:36.568 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:03:36.568 -07 000000476 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:36.568 -07 000000476 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 00:03:36.568 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-18 00:03:37.128 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:03:37.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:03:37.518 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:37.518 -07 000000012 INF: FPGA: Recv YRDPOS 146470
17-03-18 00:03:37.528 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:37.528 -07 000000476 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:37.548 -07 000000476 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:03:37.548 -07 000000476 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 00:03:37.548 -07 000000476 INF: Y Motor: Moved to 71.5186 after 1460 ms (table move)
17-03-18 00:03:37.558 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173079 mm (DAC = 37809)
17-03-18 00:03:37.558 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:37.558 -07 000000476 INF: FPGA: Recv ZSGSRD 36234
17-03-18 00:03:37.568 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:03:37.568 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:37.568 -07 000000476 INF: FPGA: Recv ZSGSRD 36238
17-03-18 00:03:37.578 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:37.578 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:37.578 -07 000000012 INF: FPGA: Recv ZSGSRD 36240
17-03-18 00:03:37.588 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:37.588 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:37.588 -07 000000012 INF: FPGA: Recv ZSGSRD 36233
17-03-18 00:03:37.598 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:37.598 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:37.598 -07 000000012 INF: FPGA: Recv ZSGSRD 36226
17-03-18 00:03:37.608 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:37.608 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:37.608 -07 000000012 INF: FPGA: Recv ZSGSRD 36236
17-03-18 00:03:37.618 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:37.618 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:37.618 -07 000000012 INF: FPGA: Recv ZSGSRD 36223
17-03-18 00:03:37.628 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:37.628 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:37.628 -07 000000476 INF: FPGA: Recv ZSGSRD 36234
17-03-18 00:03:37.638 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:37.638 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:37.638 -07 000000476 INF: FPGA: Recv ZSGSRD 36230
17-03-18 00:03:37.648 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:37.648 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:37.648 -07 000000012 INF: FPGA: Recv ZSGSRD 36233
17-03-18 00:03:37.658 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:37.658 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:37.658 -07 000000476 INF: FPGA: Recv ZPIEZORD 32184
17-03-18 00:03:37.668 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:37.668 -07 000000547 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.769 V. Piezo Error = -8.9 V.
17-03-18 00:03:37.668 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36233 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36234 (-172.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36223 (-172.1 uncal um), Max = 36240 (-172.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 00:03:37.668 -07 000000547 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36233, posNoise = 7, negNoise = 10
17-03-18 00:03:37.668 -07 000000547 INF: Z Motor: After move to -0.173079, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:37.668 -07 000000547 INF: Z Motor: Settle wait time = 1464 ms, measure time = 108 ms (allowed 150 ms), total time = 1572 ms
17-03-18 00:03:37.668 -07 000000547 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 00:03:37.678 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.041198,
17-03-18 00:03:37.718 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 00:03:37.718 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:03:37.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:37.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:37.718 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:37.718 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:37.718 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:03:37.718 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:37.718 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:37.728 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:03:37.728 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:03:37.728 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:03:37.738 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 00:03:37.738 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 00:03:37.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:03:37.788 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:03:38.088 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:03:38.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:03:38.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:03:38.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) start.
17-03-18 00:03:38.128 -07 000000547 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:03:38.128 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 00:03:38.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 386 ms overall
17-03-18 00:03:38.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 00:03:38.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:38.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 00:03:38.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 00:03:38.228 -07 000000502 INF: Autofocus start
17-03-18 00:03:38.228 -07 000000502 INF: MeasureProfile start
17-03-18 00:03:38.228 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:38.228 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:38.238 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:03:38.238 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:03:38.238 -07 000000502 INF: MeasureProfile done
17-03-18 00:03:38.238 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-18 00:03:38.238 -07 000000502 INF: Autofocus finished
17-03-18 00:03:38.438 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:03:38.438 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:03:38.438 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.17309183054356. ----------
17-03-18 00:03:38.448 -07 000000610 INF: Cycle	81	Tile	15	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:03:38.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36306, sync = True, waitForSettling = True)
17-03-18 00:03:38.448 -07 000000610 INF: Z Motor: Moving to -0.166198 mm, started at -0.173092 mm, distance = 6.89 um
17-03-18 00:03:38.448 -07 000000610 INF: FPGA: Xmit ZDACW 36306\n [Z Motor]
17-03-18 00:03:38.448 -07 000000547 INF: FPGA: Recv ZDACW
17-03-18 00:03:38.458 -07 000000610 INF: FPGA: 'ZDACW 36306' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:03:38.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:38.458 -07 000000476 INF: FPGA: Recv ZDACR 36306
17-03-18 00:03:38.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:38.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:03:38.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:38.618 -07 000000458 INF: FPGA: Recv ZSGSRD 35163
17-03-18 00:03:38.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:38.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:38.628 -07 000000012 INF: FPGA: Recv ZSGSRD 35160
17-03-18 00:03:38.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:38.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:38.638 -07 000000458 INF: FPGA: Recv ZSGSRD 35163
17-03-18 00:03:38.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:38.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:38.648 -07 000000561 INF: FPGA: Recv ZSGSRD 35164
17-03-18 00:03:38.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:38.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:38.658 -07 000000547 INF: FPGA: Recv ZSGSRD 35162
17-03-18 00:03:38.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:38.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:38.668 -07 000000458 INF: FPGA: Recv ZSGSRD 35163
17-03-18 00:03:38.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:38.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:38.678 -07 000000502 INF: FPGA: Recv ZSGSRD 35163
17-03-18 00:03:38.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:38.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:38.688 -07 000000476 INF: FPGA: Recv ZSGSRD 35169
17-03-18 00:03:38.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:38.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:38.698 -07 000000502 INF: FPGA: Recv ZSGSRD 35160
17-03-18 00:03:38.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:38.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:38.708 -07 000000576 INF: FPGA: Recv ZSGSRD 35163
17-03-18 00:03:38.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:38.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:38.718 -07 000000561 INF: FPGA: Recv ZPIEZORD 30726
17-03-18 00:03:38.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:38.728 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.540 V. Piezo Error = -9.8 V.
17-03-18 00:03:38.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35163 (-165.4 uncal um), Error = 0.8 uncal um, Median = 35163 (-165.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35160 (-165.3 uncal um), Max = 35169 (-165.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 00:03:38.728 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35163, posNoise = 6, negNoise = 3
17-03-18 00:03:38.728 -07 000000610 INF: Z Motor: After move to -0.166198, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:38.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 00:03:38.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:38.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:38.728 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:38.728 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:38.728 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:03:38.728 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:03:38.728 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:03:38.728 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:38.728 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:03:38.728 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:03:38.728 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:38.728 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:03:38.738 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:03:38.738 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:03:38.738 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 00:03:38.738 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:03:38.748 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 00:03:38.748 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 00:03:38.748 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 00:03:38.748 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 00:03:38.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36483 150\n [Camera]
17-03-18 00:03:38.948 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:03:39.988 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:03:39.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:03:39.988 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:03:39.988 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:39.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:03:39.998 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:39.998 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:39.998 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 00:03:39.998 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:39.998 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 00:03:40.178 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36483 1422
17-03-18 00:03:40.328 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:03:40.398 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 00:03:40.398 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 00:03:40.398 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:40.398 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 00:03:40.398 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 00:03:40.398 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:40.398 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:03:40.398 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 00:03:40.398 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:03:40.408 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 00:03:40.828 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:03:40.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:03:40.838 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:40.838 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:03:40.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:03:40.838 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:40.838 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:40.838 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 00:03:40.838 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:40.838 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 00:03:41.028 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:03:41.028 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:03:41.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36483 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-18 00:03:41.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:03:41.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.166217923551876. ------
17-03-18 00:03:41.028 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:41.028 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17262 mm
17-03-18 00:03:41.028 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:03:41.028 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:41.038 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:03:41.038 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37708, sync = True, waitForSettling = False)
17-03-18 00:03:41.038 -07 000000502 INF: Z Motor: Moving to -0.172616 mm, started at -0.166218 mm, distance = -6.40 um
17-03-18 00:03:41.038 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:03:41.038 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 00:03:41.038 -07 000000547 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 00:03:41.048 -07 000000502 INF: FPGA: Xmit ZDACW 37708\n [Z Motor]
17-03-18 00:03:41.048 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 00:03:41.058 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:41.058 -07 000000502 INF: FPGA: 'ZDACW 37708' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:03:41.058 -07 000000458 INF: FPGA: Recv YRDPOS 146470
17-03-18 00:03:41.068 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:41.068 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 00:03:41.068 -07 000000547 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:41.068 -07 000000547 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:03:41.068 -07 000000547 INF: Y Motor: Moving 1350 steps-30
17-03-18 00:03:41.068 -07 000000576 INF: FPGA: Recv ZDACR 37708
17-03-18 00:03:41.078 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:03:41.078 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:03:41.078 -07 000000502 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 00:03:41.228 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 00:03:41.228 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 00:03:41.228 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:41.228 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:41.228 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 00:03:41.228 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 00:03:41.228 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:41.238 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:41.238 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 00:03:41.238 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:03:41.238 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 00:03:41.238 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 00:03:41.448 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 00:03:41.448 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 00:03:41.498 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:41.498 -07 000000431 INF: FPGA: Recv YRDPOS 148171
17-03-18 00:03:41.508 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:41.508 -07 000000547 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:41.508 -07 000000547 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 00:03:41.508 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-18 00:03:42.458 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:42.718 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:03:42.718 -07 000000415 INF: FPGA: Recv YRDPOS 148171
17-03-18 00:03:42.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:03:42.718 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 251 ms to get response, and 261 ms overall
17-03-18 00:03:42.718 -07 000000547 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:42.748 -07 000000547 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:03:42.748 -07 000000547 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:03:42.748 -07 000000547 INF: Y Motor: Moved to 72.3491 after 1713 ms (table move)
17-03-18 00:03:42.748 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172616 mm (DAC = 37708)
17-03-18 00:03:42.768 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:42.768 -07 000000431 INF: FPGA: Recv ZSGSRD 36165
17-03-18 00:03:42.778 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 00:03:42.778 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:42.778 -07 000000415 INF: FPGA: Recv ZSGSRD 36160
17-03-18 00:03:42.788 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:42.788 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:42.788 -07 000000561 INF: FPGA: Recv ZSGSRD 36158
17-03-18 00:03:42.798 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:42.798 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:42.798 -07 000000431 INF: FPGA: Recv ZSGSRD 36157
17-03-18 00:03:42.808 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:42.808 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:42.808 -07 000000476 INF: FPGA: Recv ZSGSRD 36160
17-03-18 00:03:42.818 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:42.818 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:42.818 -07 000000561 INF: FPGA: Recv ZSGSRD 36163
17-03-18 00:03:42.828 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:42.828 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:42.828 -07 000000476 INF: FPGA: Recv ZSGSRD 36163
17-03-18 00:03:42.838 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:42.838 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:42.838 -07 000000431 INF: FPGA: Recv ZSGSRD 36162
17-03-18 00:03:42.848 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:42.848 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:42.848 -07 000000415 INF: FPGA: Recv ZSGSRD 36168
17-03-18 00:03:42.858 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:42.858 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:42.858 -07 000000431 INF: FPGA: Recv ZSGSRD 36155
17-03-18 00:03:42.868 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:42.868 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:42.868 -07 000000415 INF: FPGA: Recv ZPIEZORD 32108
17-03-18 00:03:42.878 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:42.878 -07 000000429 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.9 V.
17-03-18 00:03:42.878 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36161 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36161 (-171.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36155 (-171.7 uncal um), Max = 36168 (-171.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:03:42.878 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36161, posNoise = 7, negNoise = 6
17-03-18 00:03:42.878 -07 000000429 INF: Z Motor: After move to -0.172616, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:42.878 -07 000000429 INF: Z Motor: Settle wait time = 1718 ms, measure time = 122 ms (allowed 150 ms), total time = 1840 ms
17-03-18 00:03:42.878 -07 000000429 INF: Z Motor: Waiting extra 28 ms after reading position to reach expected total of 150 ms
17-03-18 00:03:42.908 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1873 ms
17-03-18 00:03:42.908 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:03:42.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:42.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:42.908 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:42.908 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:03:42.908 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:42.908 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:42.908 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 00:03:42.908 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:03:42.918 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:03:42.918 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:03:42.928 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 00:03:42.928 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 00:03:42.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:03:42.978 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:03:43.038 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.024884,
17-03-18 00:03:43.278 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:03:43.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:03:43.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:03:43.378 -07 000000431 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:03:43.378 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-18 00:03:43.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 00:03:43.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 439 ms to get response, and 451 ms overall
17-03-18 00:03:43.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:03:43.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:43.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:03:43.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 234 ms.
17-03-18 00:03:43.588 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:43.588 -07 000000576 INF: Autofocus start
17-03-18 00:03:43.588 -07 000000576 INF: MeasureProfile start
17-03-18 00:03:43.588 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:43.598 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:03:43.598 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:03:43.598 -07 000000576 INF: MeasureProfile done
17-03-18 00:03:43.598 -07 000000576 INF: X=16  Z correction [um]=0.01042744
17-03-18 00:03:43.598 -07 000000576 INF: Autofocus finished
17-03-18 00:03:43.798 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:03:43.798 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:03:43.798 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.172629287269353. ----------
17-03-18 00:03:43.798 -07 000000610 INF: Cycle	81	Tile	16	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:03:43.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36223, sync = True, waitForSettling = True)
17-03-18 00:03:43.808 -07 000000610 INF: Z Motor: Moving to -0.165818 mm, started at -0.172629 mm, distance = 6.81 um
17-03-18 00:03:43.808 -07 000000610 INF: FPGA: Xmit ZDACW 36223\n [Z Motor]
17-03-18 00:03:43.808 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 00:03:43.818 -07 000000610 INF: FPGA: 'ZDACW 36223' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:43.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:43.818 -07 000000561 INF: FPGA: Recv ZDACR 36223
17-03-18 00:03:43.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:43.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:03:43.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:43.978 -07 000000429 INF: FPGA: Recv ZSGSRD 35105
17-03-18 00:03:43.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:43.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:43.988 -07 000000561 INF: FPGA: Recv ZSGSRD 35104
17-03-18 00:03:43.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:43.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:43.998 -07 000000561 INF: FPGA: Recv ZSGSRD 35101
17-03-18 00:03:44.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:44.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:44.008 -07 000000429 INF: FPGA: Recv ZSGSRD 35100
17-03-18 00:03:44.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:44.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:44.018 -07 000000429 INF: FPGA: Recv ZSGSRD 35110
17-03-18 00:03:44.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:44.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:44.028 -07 000000415 INF: FPGA: Recv ZSGSRD 35104
17-03-18 00:03:44.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:44.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:44.038 -07 000000415 INF: FPGA: Recv ZSGSRD 35102
17-03-18 00:03:44.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:44.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:44.048 -07 000000458 INF: FPGA: Recv ZSGSRD 35105
17-03-18 00:03:44.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:44.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:44.058 -07 000000458 INF: FPGA: Recv ZSGSRD 35106
17-03-18 00:03:44.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:44.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:44.068 -07 000000458 INF: FPGA: Recv ZSGSRD 35095
17-03-18 00:03:44.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:44.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:44.078 -07 000000458 INF: FPGA: Recv ZPIEZORD 30704
17-03-18 00:03:44.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:44.088 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.527 V. Piezo Error = -9.7 V.
17-03-18 00:03:44.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35103 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35104 (-165.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35095 (-164.9 uncal um), Max = 35110 (-165.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 00:03:44.088 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35103, posNoise = 7, negNoise = 8
17-03-18 00:03:44.088 -07 000000610 INF: Z Motor: After move to -0.165818, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:44.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 00:03:44.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:44.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:44.088 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:03:44.088 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:44.088 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:44.088 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:03:44.088 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:03:44.088 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:44.088 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:03:44.088 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 00:03:44.098 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:03:44.098 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 00:03:44.098 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:03:44.098 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:44.098 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 00:03:44.098 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:03:44.118 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:03:44.118 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 26 ms.
17-03-18 00:03:44.118 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 00:03:44.118 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 27 ms.
17-03-18 00:03:44.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36399 150\n [Camera]
17-03-18 00:03:44.318 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:03:45.358 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:03:45.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:03:45.358 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:45.358 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:03:45.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:03:45.358 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:45.358 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:45.358 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-18 00:03:45.368 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:45.368 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 00:03:45.548 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36399 1422
17-03-18 00:03:45.698 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:03:45.758 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 00:03:45.758 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 00:03:45.758 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:45.758 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 00:03:45.758 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 00:03:45.758 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:45.768 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:03:45.768 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 00:03:45.768 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:03:45.778 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 00:03:46.198 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:03:46.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:03:46.198 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:46.198 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:03:46.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:03:46.198 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:46.308 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:46.308 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 00:03:46.318 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:46.318 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 00:03:46.388 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:03:46.388 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:03:46.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36399 150' command took 2 ms to send, 2267 ms to get response, and 2272 ms overall
17-03-18 00:03:46.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:03:46.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.16583247082337. ------
17-03-18 00:03:46.398 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:46.398 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17240 mm
17-03-18 00:03:46.398 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:03:46.398 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 00:03:46.398 -07 000000448 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 00:03:46.398 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:46.398 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 37662, sync = True, waitForSettling = False)
17-03-18 00:03:46.398 -07 000000429 INF: Z Motor: Moving to -0.172406 mm, started at -0.165832 mm, distance = -6.57 um
17-03-18 00:03:46.408 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:03:46.408 -07 000000429 INF: FPGA: Xmit ZDACW 37662\n [Z Motor]
17-03-18 00:03:46.408 -07 000000431 INF: FPGA: Recv ZDACW
17-03-18 00:03:46.418 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:46.418 -07 000000429 INF: FPGA: 'ZDACW 37662' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 00:03:46.418 -07 000000415 INF: FPGA: Recv YRDPOS 148171
17-03-18 00:03:46.428 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:03:46.428 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 00:03:46.428 -07 000000448 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:46.428 -07 000000448 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:03:46.428 -07 000000448 INF: Y Motor: Moving 1350 steps-28
17-03-18 00:03:46.438 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:46.438 -07 000000415 INF: FPGA: Recv ZDACR 37662
17-03-18 00:03:46.448 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:03:46.448 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:03:46.448 -07 000000429 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 00:03:46.628 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:03:46.628 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 00:03:46.698 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 00:03:46.698 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 00:03:46.698 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:46.698 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:46.698 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 00:03:46.698 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 00:03:46.698 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:46.708 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:46.708 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-18 00:03:46.708 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-18 00:03:46.828 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 00:03:46.828 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 00:03:46.868 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:46.868 -07 000000501 INF: FPGA: Recv YRDPOS 149863
17-03-18 00:03:46.878 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:03:46.878 -07 000000448 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:46.878 -07 000000448 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 00:03:46.878 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.843 mm, average velocity = 2.109 mm/sec
17-03-18 00:03:47.128 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:03:47.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:03:47.828 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:47.828 -07 000000618 INF: FPGA: Recv YRDPOS 149863
17-03-18 00:03:47.838 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:47.838 -07 000000448 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:47.858 -07 000000448 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:03:47.858 -07 000000448 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:03:47.858 -07 000000448 INF: Y Motor: Moved to 73.1753 after 1460 ms (table move)
17-03-18 00:03:47.868 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172406 mm (DAC = 37662)
17-03-18 00:03:47.868 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:47.868 -07 000000415 INF: FPGA: Recv ZSGSRD 36133
17-03-18 00:03:47.878 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:03:47.878 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:47.878 -07 000000561 INF: FPGA: Recv ZSGSRD 36133
17-03-18 00:03:47.888 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:47.888 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:47.888 -07 000000561 INF: FPGA: Recv ZSGSRD 36128
17-03-18 00:03:47.898 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:47.898 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:47.898 -07 000000561 INF: FPGA: Recv ZSGSRD 36125
17-03-18 00:03:47.908 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:47.908 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:47.908 -07 000000424 INF: FPGA: Recv ZSGSRD 36122
17-03-18 00:03:47.918 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:47.918 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:47.918 -07 000000424 INF: FPGA: Recv ZSGSRD 36122
17-03-18 00:03:47.928 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:47.928 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:47.928 -07 000000424 INF: FPGA: Recv ZSGSRD 36137
17-03-18 00:03:47.938 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:47.938 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:47.938 -07 000000424 INF: FPGA: Recv ZSGSRD 36128
17-03-18 00:03:47.948 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:47.948 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:47.948 -07 000000415 INF: FPGA: Recv ZSGSRD 36129
17-03-18 00:03:47.958 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:47.958 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:47.958 -07 000000576 INF: FPGA: Recv ZSGSRD 36132
17-03-18 00:03:47.968 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:47.968 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:47.968 -07 000000576 INF: FPGA: Recv ZPIEZORD 32073
17-03-18 00:03:47.978 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:47.978 -07 000000547 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.747 V. Piezo Error = -9.0 V.
17-03-18 00:03:47.978 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36129 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36128 (-171.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36122 (-171.5 uncal um), Max = 36137 (-171.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 00:03:47.978 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36129, posNoise = 8, negNoise = 7
17-03-18 00:03:47.978 -07 000000547 INF: Z Motor: After move to -0.172406, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:47.978 -07 000000547 INF: Z Motor: Settle wait time = 1464 ms, measure time = 109 ms (allowed 150 ms), total time = 1573 ms
17-03-18 00:03:47.978 -07 000000547 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 00:03:48.028 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 00:03:48.028 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:03:48.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:48.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:48.028 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:48.028 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:48.028 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:03:48.028 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:48.028 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:48.028 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:03:48.038 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:03:48.038 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:03:48.048 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 00:03:48.048 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 00:03:48.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:03:48.098 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:03:48.398 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:03:48.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:03:48.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:03:48.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 00:03:48.408 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.009895,
17-03-18 00:03:48.438 -07 000000431 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:03:48.438 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-18 00:03:48.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 00:03:48.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 00:03:48.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:48.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:03:48.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 00:03:48.538 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:48.538 -07 000000415 INF: Autofocus start
17-03-18 00:03:48.538 -07 000000415 INF: MeasureProfile start
17-03-18 00:03:48.538 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:48.548 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:03:48.548 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:03:48.548 -07 000000415 INF: MeasureProfile done
17-03-18 00:03:48.548 -07 000000415 INF: X=48  Z correction [um]=0.1739867
17-03-18 00:03:48.548 -07 000000415 INF: Autofocus finished
17-03-18 00:03:48.748 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:03:48.748 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 00:03:48.748 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.172423712480817. ----------
17-03-18 00:03:48.758 -07 000000610 INF: Cycle	81	Tile	17	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:03:48.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36212, sync = True, waitForSettling = True)
17-03-18 00:03:48.758 -07 000000610 INF: Z Motor: Moving to -0.165768 mm, started at -0.172424 mm, distance = 6.66 um
17-03-18 00:03:48.758 -07 000000610 INF: FPGA: Xmit ZDACW 36212\n [Z Motor]
17-03-18 00:03:48.758 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 00:03:48.768 -07 000000610 INF: FPGA: 'ZDACW 36212' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:03:48.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:48.768 -07 000000576 INF: FPGA: Recv ZDACR 36212
17-03-18 00:03:48.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:48.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:03:48.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:48.928 -07 000000576 INF: FPGA: Recv ZSGSRD 35091
17-03-18 00:03:48.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:48.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:48.938 -07 000000501 INF: FPGA: Recv ZSGSRD 35099
17-03-18 00:03:48.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:48.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:48.948 -07 000000561 INF: FPGA: Recv ZSGSRD 35096
17-03-18 00:03:48.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:48.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:48.958 -07 000000476 INF: FPGA: Recv ZSGSRD 35096
17-03-18 00:03:48.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:48.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:48.968 -07 000000576 INF: FPGA: Recv ZSGSRD 35091
17-03-18 00:03:48.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:48.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:48.978 -07 000000431 INF: FPGA: Recv ZSGSRD 35094
17-03-18 00:03:48.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:48.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:48.988 -07 000000576 INF: FPGA: Recv ZSGSRD 35103
17-03-18 00:03:48.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:48.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:48.998 -07 000000501 INF: FPGA: Recv ZSGSRD 35092
17-03-18 00:03:49.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:49.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:49.008 -07 000000576 INF: FPGA: Recv ZSGSRD 35095
17-03-18 00:03:49.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:49.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:49.018 -07 000000501 INF: FPGA: Recv ZSGSRD 35093
17-03-18 00:03:49.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:49.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:49.028 -07 000000431 INF: FPGA: Recv ZPIEZORD 30689
17-03-18 00:03:49.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:49.038 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.526 V. Piezo Error = -9.7 V.
17-03-18 00:03:49.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35095 (-164.9 uncal um), Error = 0.9 uncal um, Median = 35094 (-164.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35091 (-164.9 uncal um), Max = 35103 (-165.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 00:03:49.038 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35095, posNoise = 8, negNoise = 4
17-03-18 00:03:49.038 -07 000000610 INF: Z Motor: After move to -0.165768, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:49.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 00:03:49.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:49.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:49.038 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:49.038 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:03:49.038 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:49.038 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:49.038 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:03:49.038 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:03:49.038 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:49.038 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:03:49.038 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:03:49.038 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:03:49.048 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 00:03:49.048 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:03:49.048 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:03:49.048 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:03:49.058 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:03:49.058 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:03:49.058 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:03:49.058 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:03:49.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36389 150\n [Camera]
17-03-18 00:03:49.258 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:03:50.298 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:03:50.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:03:50.298 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:50.308 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:03:50.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:03:50.308 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:50.308 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:50.308 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 00:03:50.308 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:50.308 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 00:03:50.488 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36389 1422
17-03-18 00:03:50.638 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:03:50.698 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 00:03:50.698 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 00:03:50.698 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:50.708 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 00:03:50.708 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 00:03:50.708 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:50.708 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:50.708 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 00:03:50.708 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:50.718 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 00:03:51.138 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:03:51.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:03:51.148 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:51.148 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:03:51.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:03:51.148 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:51.148 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 00:03:51.148 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:51.158 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:51.158 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 00:03:51.338 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:03:51.338 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:03:51.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36389 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-18 00:03:51.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:03:51.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.165781077126236. ------
17-03-18 00:03:51.338 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:51.338 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17218 mm
17-03-18 00:03:51.338 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:03:51.348 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:51.348 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:03:51.348 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:03:51.348 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 00:03:51.348 -07 000000476 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 00:03:51.348 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37613, sync = True, waitForSettling = False)
17-03-18 00:03:51.348 -07 000000561 INF: Z Motor: Moving to -0.172181 mm, started at -0.165781 mm, distance = -6.40 um
17-03-18 00:03:51.358 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:51.358 -07 000000431 INF: FPGA: Recv YRDPOS 149863
17-03-18 00:03:51.368 -07 000000561 INF: FPGA: Xmit ZDACW 37613\n [Z Motor]
17-03-18 00:03:51.368 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 00:03:51.368 -07 000000476 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:51.368 -07 000000476 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:03:51.368 -07 000000476 INF: Y Motor: Moving 1356 steps-35
17-03-18 00:03:51.368 -07 000000431 INF: FPGA: Recv ZDACW
17-03-18 00:03:51.378 -07 000000561 INF: FPGA: 'ZDACW 37613' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 00:03:51.378 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:51.378 -07 000000431 INF: FPGA: Recv ZDACR 37613
17-03-18 00:03:51.388 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:51.388 -07 000000561 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 00:03:51.388 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:03:51.538 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 00:03:51.538 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 00:03:51.538 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:51.538 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 00:03:51.538 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 00:03:51.538 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:51.538 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:51.548 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:51.548 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 00:03:51.548 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:03:51.548 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 00:03:51.548 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 00:03:51.758 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 00:03:51.758 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 00:03:51.798 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:51.798 -07 000000561 INF: FPGA: Recv YRDPOS 151567
17-03-18 00:03:51.808 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:03:51.808 -07 000000476 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:51.808 -07 000000476 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 00:03:51.808 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.134 mm/sec
17-03-18 00:03:52.128 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:03:52.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:03:52.758 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:52.758 -07 000000431 INF: FPGA: Recv YRDPOS 151568
17-03-18 00:03:52.768 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:52.768 -07 000000476 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:52.788 -07 000000476 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:03:52.788 -07 000000476 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 00:03:52.788 -07 000000476 INF: Y Motor: Moved to 74.0078 after 1439 ms (table move)
17-03-18 00:03:52.788 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172181 mm (DAC = 37613)
17-03-18 00:03:52.788 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:52.788 -07 000000458 INF: FPGA: Recv ZSGSRD 36091
17-03-18 00:03:52.798 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:03:52.798 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:52.798 -07 000000626 INF: FPGA: Recv ZSGSRD 36085
17-03-18 00:03:52.808 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:52.808 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:52.808 -07 000000561 INF: FPGA: Recv ZSGSRD 36098
17-03-18 00:03:52.818 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:52.818 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:52.818 -07 000000431 INF: FPGA: Recv ZSGSRD 36096
17-03-18 00:03:52.828 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:52.828 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:52.828 -07 000000576 INF: FPGA: Recv ZSGSRD 36092
17-03-18 00:03:52.838 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:52.838 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:52.838 -07 000000561 INF: FPGA: Recv ZSGSRD 36096
17-03-18 00:03:52.848 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:52.848 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:52.848 -07 000000501 INF: FPGA: Recv ZSGSRD 36095
17-03-18 00:03:52.858 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:52.858 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:52.858 -07 000000576 INF: FPGA: Recv ZSGSRD 36093
17-03-18 00:03:52.868 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:52.868 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:52.868 -07 000000626 INF: FPGA: Recv ZSGSRD 36088
17-03-18 00:03:52.878 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:52.878 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:52.878 -07 000000476 INF: FPGA: Recv ZSGSRD 36083
17-03-18 00:03:52.888 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:52.888 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:52.888 -07 000000626 INF: FPGA: Recv ZPIEZORD 32066
17-03-18 00:03:52.898 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:52.898 -07 000000415 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.739 V. Piezo Error = -8.9 V.
17-03-18 00:03:52.898 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36092 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36092 (-171.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36083 (-171.2 uncal um), Max = 36098 (-171.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 00:03:52.898 -07 000000415 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36092, posNoise = 6, negNoise = 9
17-03-18 00:03:52.898 -07 000000415 INF: Z Motor: After move to -0.172181, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:52.898 -07 000000415 INF: Z Motor: Settle wait time = 1443 ms, measure time = 106 ms (allowed 150 ms), total time = 1549 ms
17-03-18 00:03:52.898 -07 000000415 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 00:03:52.948 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 00:03:52.948 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:03:52.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:52.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:52.948 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:52.948 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:52.948 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:03:52.948 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:52.948 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 00:03:52.948 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:03:52.958 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:03:52.958 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:03:52.968 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 00:03:52.968 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 00:03:52.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:03:53.018 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:03:53.318 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:03:53.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:03:53.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:03:53.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-18 00:03:53.358 -07 000000476 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:03:53.358 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 00:03:53.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 00:03:53.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 00:03:53.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:53.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:03:53.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 00:03:53.458 -07 000000431 INF: Autofocus start
17-03-18 00:03:53.458 -07 000000431 INF: MeasureProfile start
17-03-18 00:03:53.468 -07 000000431 INF: MeasureProfile done
17-03-18 00:03:53.468 -07 000000431 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 00:03:53.468 -07 000000431 INF: Autofocus finished
17-03-18 00:03:53.478 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:53.478 -07 000000586 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:53.488 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 00:03:53.488 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:03:53.688 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:03:53.688 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:03:53.688 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172186016631571. ----------
17-03-18 00:03:53.688 -07 000000610 INF: Cycle	81	Tile	18	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:03:53.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36093, sync = True, waitForSettling = True)
17-03-18 00:03:53.698 -07 000000610 INF: Z Motor: Moving to -0.165223 mm, started at -0.172186 mm, distance = 6.96 um
17-03-18 00:03:53.698 -07 000000610 INF: FPGA: Xmit ZDACW 36093\n [Z Motor]
17-03-18 00:03:53.698 -07 000000476 INF: FPGA: Recv ZDACW
17-03-18 00:03:53.708 -07 000000610 INF: FPGA: 'ZDACW 36093' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:03:53.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:53.708 -07 000000501 INF: FPGA: Recv ZDACR 36093
17-03-18 00:03:53.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:53.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:03:53.778 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.001704,
17-03-18 00:03:53.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:53.868 -07 000000431 INF: FPGA: Recv ZSGSRD 35012
17-03-18 00:03:53.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:53.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:53.878 -07 000000415 INF: FPGA: Recv ZSGSRD 35017
17-03-18 00:03:53.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:53.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:53.888 -07 000000431 INF: FPGA: Recv ZSGSRD 35008
17-03-18 00:03:53.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:53.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:53.898 -07 000000586 INF: FPGA: Recv ZSGSRD 35005
17-03-18 00:03:53.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:53.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:53.908 -07 000000415 INF: FPGA: Recv ZSGSRD 35014
17-03-18 00:03:53.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:53.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:53.918 -07 000000501 INF: FPGA: Recv ZSGSRD 35012
17-03-18 00:03:53.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:53.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:53.928 -07 000000561 INF: FPGA: Recv ZSGSRD 35006
17-03-18 00:03:53.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:53.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:53.938 -07 000000576 INF: FPGA: Recv ZSGSRD 35009
17-03-18 00:03:53.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:53.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:53.948 -07 000000561 INF: FPGA: Recv ZSGSRD 35012
17-03-18 00:03:53.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:53.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:53.958 -07 000000431 INF: FPGA: Recv ZSGSRD 35016
17-03-18 00:03:53.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:53.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:53.968 -07 000000576 INF: FPGA: Recv ZPIEZORD 30582
17-03-18 00:03:53.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:53.978 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.507 V. Piezo Error = -9.7 V.
17-03-18 00:03:53.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.2 um, Read 10 ADC samples: Avg = 35011 (-164.4 uncal um), Error = 0.8 uncal um, Median = 35012 (-164.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35005 (-164.3 uncal um), Max = 35017 (-164.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:03:53.978 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35011, posNoise = 6, negNoise = 6
17-03-18 00:03:53.978 -07 000000610 INF: Z Motor: After move to -0.165223, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:53.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 00:03:53.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:53.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:53.978 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:53.978 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:53.978 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:03:53.978 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:03:53.978 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:03:53.978 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:53.978 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:03:53.978 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:03:53.978 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:53.978 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:03:53.988 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 00:03:53.988 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:03:53.988 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 00:03:53.988 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:03:53.998 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:03:53.998 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:03:53.998 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 00:03:54.008 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 00:03:54.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36270 150\n [Camera]
17-03-18 00:03:54.208 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:03:55.238 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:03:55.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:03:55.248 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:55.248 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:03:55.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:03:55.248 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:55.248 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:55.248 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 00:03:55.248 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:55.248 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2604644624, 0x0, 391868352) start.
17-03-18 00:03:55.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36270 1422
17-03-18 00:03:55.588 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:03:55.648 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2604644624, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 00:03:55.648 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 00:03:55.648 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:55.648 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 00:03:55.648 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 00:03:55.648 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:55.648 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:55.648 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 00:03:55.648 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:55.658 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 00:03:56.088 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:03:56.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:03:56.088 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:03:56.088 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:03:56.088 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 00:03:56.088 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:03:56.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:03:56.088 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:03:56.088 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:03:56.088 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 00:03:56.278 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:03:56.278 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:03:56.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36270 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall
17-03-18 00:03:56.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 00:03:56.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165241443306328. ------
17-03-18 00:03:56.288 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:56.288 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17122 mm
17-03-18 00:03:56.288 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:03:56.288 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 00:03:56.288 -07 000000561 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 00:03:56.298 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:56.488 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 00:03:56.488 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 00:03:56.488 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:56.488 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 00:03:56.488 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 00:03:56.488 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:56.498 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:03:56.498 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 00:03:56.498 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:03:56.508 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 00:03:56.508 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37403, sync = True, waitForSettling = False)
17-03-18 00:03:56.508 -07 000000431 INF: Z Motor: Moving to -0.171220 mm, started at -0.165241 mm, distance = -5.98 um
17-03-18 00:03:56.508 -07 000000431 INF: FPGA: Xmit ZDACW 37403\n [Z Motor]
17-03-18 00:03:56.508 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:56.508 -07 000000626 INF: FPGA: Recv YRDPOS 151568
17-03-18 00:03:56.508 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 00:03:56.508 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 209 ms to get response, and 225 ms overall
17-03-18 00:03:56.508 -07 000000561 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:56.518 -07 000000561 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:03:56.518 -07 000000561 INF: Y Motor: Moving 1352 steps-31
17-03-18 00:03:56.518 -07 000000431 INF: FPGA: 'ZDACW 37403' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:03:56.518 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:03:56.518 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 219 ms to get response, and 229 ms overall
17-03-18 00:03:56.528 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:56.528 -07 000000626 INF: FPGA: Recv ZDACR 37403
17-03-18 00:03:56.538 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:03:56.538 -07 000000431 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 00:03:56.538 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:03:56.738 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:03:56.738 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 00:03:56.888 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 00:03:56.888 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 00:03:56.918 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:56.918 -07 000000626 INF: FPGA: Recv YRDPOS 153254
17-03-18 00:03:56.928 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 00:03:56.928 -07 000000561 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:56.928 -07 000000561 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 00:03:56.928 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.235 mm/sec
17-03-18 00:03:57.128 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:03:57.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:03:57.878 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:03:57.878 -07 000000626 INF: FPGA: Recv YRDPOS 153254
17-03-18 00:03:57.888 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:57.888 -07 000000561 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:03:57.898 -07 000000561 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:03:57.898 -07 000000561 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:03:57.898 -07 000000561 INF: Y Motor: Moved to 74.8311 after 1614 ms (table move)
17-03-18 00:03:57.908 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171220 mm (DAC = 37403)
17-03-18 00:03:57.908 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:57.908 -07 000000626 INF: FPGA: Recv ZSGSRD 35954
17-03-18 00:03:57.918 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:03:57.918 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:57.918 -07 000000431 INF: FPGA: Recv ZSGSRD 35939
17-03-18 00:03:57.928 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:57.928 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:57.928 -07 000000431 INF: FPGA: Recv ZSGSRD 35934
17-03-18 00:03:57.938 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:57.938 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:57.938 -07 000000561 INF: FPGA: Recv ZSGSRD 35944
17-03-18 00:03:57.948 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:57.948 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:57.948 -07 000000626 INF: FPGA: Recv ZSGSRD 35941
17-03-18 00:03:57.958 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:57.958 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:57.958 -07 000000431 INF: FPGA: Recv ZSGSRD 35943
17-03-18 00:03:57.968 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:57.968 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:57.968 -07 000000431 INF: FPGA: Recv ZSGSRD 35949
17-03-18 00:03:57.978 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:57.978 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:57.978 -07 000000431 INF: FPGA: Recv ZSGSRD 35946
17-03-18 00:03:57.988 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:57.988 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:57.988 -07 000000431 INF: FPGA: Recv ZSGSRD 35937
17-03-18 00:03:57.998 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:57.998 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:57.998 -07 000000502 INF: FPGA: Recv ZSGSRD 35943
17-03-18 00:03:58.008 -07 000000476 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:58.008 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:58.008 -07 000000561 INF: FPGA: Recv ZPIEZORD 31856
17-03-18 00:03:58.018 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:58.018 -07 000000476 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -9.0 V.
17-03-18 00:03:58.018 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35943 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35943 (-170.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 35934 (-170.3 uncal um), Max = 35954 (-170.4 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 00:03:58.018 -07 000000476 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35943, posNoise = 11, negNoise = 9
17-03-18 00:03:58.018 -07 000000476 INF: Z Motor: After move to -0.171220, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:58.018 -07 000000476 INF: Z Motor: Settle wait time = 1399 ms, measure time = 108 ms (allowed 150 ms), total time = 1507 ms
17-03-18 00:03:58.018 -07 000000476 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 00:03:58.068 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1779 ms
17-03-18 00:03:58.068 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:03:58.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:58.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:58.068 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:58.068 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:58.068 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:03:58.068 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:58.068 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:58.068 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:03:58.068 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:03:58.068 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:03:58.088 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 00:03:58.088 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 00:03:58.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:03:58.138 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:03:58.438 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:03:58.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:03:58.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:03:58.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2640066888, 0x0, 559484976) start.
17-03-18 00:03:58.478 -07 000000431 INF: FPGA: Recv @CAMSNAP 382
17-03-18 00:03:58.478 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-18 00:03:58.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 387 ms overall
17-03-18 00:03:58.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2640066888, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 00:03:58.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:03:58.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:03:58.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 00:03:58.578 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:03:58.578 -07 000000012 INF: Autofocus start
17-03-18 00:03:58.578 -07 000000012 INF: MeasureProfile start
17-03-18 00:03:58.578 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:03:58.588 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:03:58.588 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:03:58.588 -07 000000012 INF: MeasureProfile done
17-03-18 00:03:58.588 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-18 00:03:58.588 -07 000000012 INF: Autofocus finished
17-03-18 00:03:58.788 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:03:58.788 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:03:58.788 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171228809022449. ----------
17-03-18 00:03:58.788 -07 000000610 INF: Cycle	81	Tile	19	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:03:58.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35918, sync = True, waitForSettling = True)
17-03-18 00:03:58.798 -07 000000610 INF: Z Motor: Moving to -0.164422 mm, started at -0.171229 mm, distance = 6.81 um
17-03-18 00:03:58.798 -07 000000610 INF: FPGA: Xmit ZDACW 35918\n [Z Motor]
17-03-18 00:03:58.798 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 00:03:58.808 -07 000000610 INF: FPGA: 'ZDACW 35918' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:58.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:03:58.808 -07 000000448 INF: FPGA: Recv ZDACR 35918
17-03-18 00:03:58.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:58.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:03:58.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:58.968 -07 000000424 INF: FPGA: Recv ZSGSRD 34889
17-03-18 00:03:58.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:58.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:58.978 -07 000000458 INF: FPGA: Recv ZSGSRD 34882
17-03-18 00:03:58.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:58.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:58.988 -07 000000424 INF: FPGA: Recv ZSGSRD 34883
17-03-18 00:03:58.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:58.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:58.998 -07 000000448 INF: FPGA: Recv ZSGSRD 34884
17-03-18 00:03:59.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:03:59.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:59.008 -07 000000424 INF: FPGA: Recv ZSGSRD 34886
17-03-18 00:03:59.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:59.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:59.018 -07 000000561 INF: FPGA: Recv ZSGSRD 34886
17-03-18 00:03:59.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:59.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:59.028 -07 000000424 INF: FPGA: Recv ZSGSRD 34882
17-03-18 00:03:59.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:59.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:59.038 -07 000000448 INF: FPGA: Recv ZSGSRD 34890
17-03-18 00:03:59.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:59.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:59.048 -07 000000618 INF: FPGA: Recv ZSGSRD 34884
17-03-18 00:03:59.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:59.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:03:59.058 -07 000000561 INF: FPGA: Recv ZSGSRD 34883
17-03-18 00:03:59.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:59.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:03:59.068 -07 000000424 INF: FPGA: Recv ZPIEZORD 30448
17-03-18 00:03:59.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:03:59.078 -07 000000610 INF: Z Motor: Piezo is near 45.0 V (nominally 0 to 100 V), expect near 54.8 V, since DAC is at 5.481 V. Piezo Error = -9.8 V.
17-03-18 00:03:59.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.4 um, Read 10 ADC samples: Avg = 34885 (-163.6 uncal um), Error = 0.9 uncal um, Median = 34884 (-163.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 34882 (-163.6 uncal um), Max = 34890 (-163.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 00:03:59.078 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34885, posNoise = 5, negNoise = 3
17-03-18 00:03:59.078 -07 000000610 INF: Z Motor: After move to -0.164422, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:03:59.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 00:03:59.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:03:59.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:03:59.078 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:03:59.078 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:03:59.078 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:03:59.078 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:03:59.078 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:03:59.078 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:03:59.078 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:03:59.078 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:03:59.078 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:03:59.078 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:03:59.088 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 00:03:59.088 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:03:59.088 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 00:03:59.088 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:03:59.098 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:03:59.098 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:03:59.098 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:03:59.098 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:03:59.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36095 150\n [Camera]
17-03-18 00:03:59.158 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.983999,
17-03-18 00:03:59.298 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:04:00.338 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:04:00.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:04:00.338 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:00.338 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:00.338 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 00:04:00.348 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:04:00.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:04:00.348 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:00.348 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:00.348 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 00:04:00.538 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36095 1422
17-03-18 00:04:00.678 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:04:00.738 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 00:04:00.738 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 00:04:00.738 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:00.748 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 00:04:00.748 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:00.748 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 00:04:00.748 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 00:04:00.748 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:00.748 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:00.758 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 00:04:01.188 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:04:01.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:04:01.188 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:01.188 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:01.188 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 00:04:01.188 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:04:01.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:04:01.188 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:01.188 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:01.188 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 00:04:01.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 2267
17-03-18 00:04:01.378 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:04:01.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36095 150' command took 2 ms to send, 2264 ms to get response, and 2274 ms overall
17-03-18 00:04:01.588 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 00:04:01.588 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 00:04:01.588 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:01.588 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 00:04:01.588 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 00:04:01.588 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:01.598 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:01.598 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 00:04:01.598 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 00:04:01.598 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 00:04:01.598 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 00:04:01.638 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 00:04:01.638 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 00:04:01.688 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 00:04:01.688 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 00:04:01.688 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 00:04:01.688 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-18 00:04:01.698 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:01.698 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 00:04:02.128 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:04:02.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:04:02.198 -07 000000626 INF: FPGA: Recv EMIN
17-03-18 00:04:02.198 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-18 00:04:02.198 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 00:04:02.198 -07 000000547 INF: FPGA: Recv EMCUR 
17-03-18 00:04:02.208 -07 000000610 INF: FPGA: 'EMCUR 60' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:04:02.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:04:02.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164431992576466. ------
17-03-18 00:04:02.208 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:02.208 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13938 mm
17-03-18 00:04:02.208 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:04:02.208 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 00:04:02.208 -07 000000547 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 00:04:02.218 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:03.168 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:03.168 -07 000000501 INF: FPGA: Recv YRDPOS 153255
17-03-18 00:04:03.168 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 950 ms to get response, and 955 ms overall
17-03-18 00:04:03.168 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:04:03.168 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 940 ms to get response, and 951 ms overall
17-03-18 00:04:03.168 -07 000000547 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:03.168 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30449, sync = True, waitForSettling = False)
17-03-18 00:04:03.168 -07 000000501 INF: Z Motor: Moving to -0.139387 mm, started at -0.164432 mm, distance = 25.05 um
17-03-18 00:04:03.168 -07 000000547 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 00:04:03.168 -07 000000547 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 00:04:03.178 -07 000000547 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 00:04:03.188 -07 000000501 INF: FPGA: Xmit ZDACW 30449\n [Z Motor]
17-03-18 00:04:03.698 -07 000000415 INF: FPGA: Recv ZDACW
17-03-18 00:04:03.698 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:04:03.698 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 520 ms to get response, and 529 ms overall
17-03-18 00:04:03.698 -07 000000501 INF: FPGA: 'ZDACW 30449' command took 0 ms to send, 500 ms to get response, and 528 ms overall
17-03-18 00:04:03.698 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:03.698 -07 000000415 INF: FPGA: Recv ZDACR 30449
17-03-18 00:04:03.708 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:03.708 -07 000000501 INF: Z Motor: MoveAbsStepped took 537 ms (did NOT wait for settling yet))
17-03-18 00:04:04.528 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.978563,
17-03-18 00:04:04.798 -07 000000576 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 00:04:04.798 -07 000000547 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1628 ms overall
17-03-18 00:04:04.798 -07 000000547 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 00:04:04.798 -07 000000547 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 00:04:04.798 -07 000000547 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1629 ms, distance = 14.918 mm, average velocity = 9.158 mm/sec
17-03-18 00:04:07.128 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:04:07.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:04:07.648 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:07.648 -07 000000586 INF: FPGA: Recv YRDPOS 122698
17-03-18 00:04:07.658 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:07.658 -07 000000547 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:07.688 -07 000000547 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:04:07.688 -07 000000547 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 00:04:07.688 -07 000000547 INF: Y Motor: Moved to 59.9111 after 5476 ms
17-03-18 00:04:07.688 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139387 mm (DAC = 30449)
17-03-18 00:04:07.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:07.698 -07 000000448 INF: FPGA: Recv ZSGSRD 30990
17-03-18 00:04:07.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 00:04:07.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:07.698 -07 000000501 INF: FPGA: Recv ZSGSRD 30990
17-03-18 00:04:07.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:04:07.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:07.708 -07 000000458 INF: FPGA: Recv ZSGSRD 30988
17-03-18 00:04:07.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:07.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:07.718 -07 000000415 INF: FPGA: Recv ZSGSRD 30988
17-03-18 00:04:07.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:07.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:07.728 -07 000000448 INF: FPGA: Recv ZSGSRD 30988
17-03-18 00:04:07.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:07.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:07.738 -07 000000501 INF: FPGA: Recv ZSGSRD 30982
17-03-18 00:04:07.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:07.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:07.748 -07 000000424 INF: FPGA: Recv ZSGSRD 30992
17-03-18 00:04:07.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:07.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:07.758 -07 000000476 INF: FPGA: Recv ZSGSRD 30986
17-03-18 00:04:07.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:07.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:07.768 -07 000000415 INF: FPGA: Recv ZSGSRD 30989
17-03-18 00:04:07.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:07.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:07.778 -07 000000547 INF: FPGA: Recv ZSGSRD 30986
17-03-18 00:04:07.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:07.788 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:07.788 -07 000000448 INF: FPGA: Recv ZPIEZORD 26357
17-03-18 00:04:07.798 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:07.798 -07 000000431 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.646 V. Piezo Error = -10.2 V.
17-03-18 00:04:07.798 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30988 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30988 (-138.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30982 (-138.6 uncal um), Max = 30992 (-138.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:04:07.798 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30988, posNoise = 4, negNoise = 6
17-03-18 00:04:07.798 -07 000000431 INF: Z Motor: After move to -0.139387, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:07.798 -07 000000431 INF: Z Motor: Settle wait time = 4527 ms, measure time = 101 ms (allowed 150 ms), total time = 4628 ms
17-03-18 00:04:07.798 -07 000000431 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 00:04:07.848 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 5633 ms
17-03-18 00:04:07.848 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:04:07.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:07.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:07.848 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:07.848 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:07.848 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:04:07.848 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:07.848 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 00:04:07.848 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 00:04:07.878 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-18 00:04:07.878 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:04:07.878 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:04:07.878 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:04:07.888 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 00:04:07.888 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 35 ms.
17-03-18 00:04:07.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:04:07.928 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:04:08.228 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:04:08.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:04:08.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:04:08.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619685872, 0x0, 559484976) start.
17-03-18 00:04:08.268 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:04:08.268 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-18 00:04:08.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 00:04:08.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619685872, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:04:08.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:08.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:04:08.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 00:04:08.468 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:08.468 -07 000000415 INF: Image SNR check: start
17-03-18 00:04:08.468 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:08.478 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:04:08.478 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:04:08.478 -07 000000415 INF: Image SNR check: pass  [peak (Max-Min)=73.26]
17-03-18 00:04:08.478 -07 000000415 INF: Autofocus start
17-03-18 00:04:08.478 -07 000000415 INF: MeasureProfile start
17-03-18 00:04:08.488 -07 000000415 INF: MeasureProfile done
17-03-18 00:04:08.488 -07 000000415 INF: X=-48  Z correction [um]=-0.2370583
17-03-18 00:04:08.488 -07 000000415 INF: Autofocus finished
17-03-18 00:04:08.678 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:04:08.678 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 00:04:08.678 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139396837860024. ----------
17-03-18 00:04:08.678 -07 000000610 INF: Cycle	81	Tile	1	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:04:08.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28909, sync = True, waitForSettling = True)
17-03-18 00:04:08.688 -07 000000610 INF: Z Motor: Moving to -0.132337 mm, started at -0.139397 mm, distance = 7.06 um
17-03-18 00:04:08.688 -07 000000610 INF: FPGA: Xmit ZDACW 28909\n [Z Motor]
17-03-18 00:04:08.688 -07 000000586 INF: FPGA: Recv ZDACW
17-03-18 00:04:08.698 -07 000000610 INF: FPGA: 'ZDACW 28909' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:04:08.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:08.698 -07 000000429 INF: FPGA: Recv ZDACR 28909
17-03-18 00:04:08.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:08.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:04:08.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:08.858 -07 000000501 INF: FPGA: Recv ZSGSRD 29893
17-03-18 00:04:08.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:08.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:08.868 -07 000000626 INF: FPGA: Recv ZSGSRD 29893
17-03-18 00:04:08.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:08.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:08.878 -07 000000586 INF: FPGA: Recv ZSGSRD 29888
17-03-18 00:04:08.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:08.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:08.888 -07 000000576 INF: FPGA: Recv ZSGSRD 29887
17-03-18 00:04:08.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:08.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:08.898 -07 000000501 INF: FPGA: Recv ZSGSRD 29889
17-03-18 00:04:08.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:08.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:08.908 -07 000000626 INF: FPGA: Recv ZSGSRD 29893
17-03-18 00:04:08.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:08.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:08.918 -07 000000448 INF: FPGA: Recv ZSGSRD 29890
17-03-18 00:04:08.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:08.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:08.928 -07 000000424 INF: FPGA: Recv ZSGSRD 29889
17-03-18 00:04:08.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:08.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:08.938 -07 000000576 INF: FPGA: Recv ZSGSRD 29895
17-03-18 00:04:08.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:08.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:08.948 -07 000000458 INF: FPGA: Recv ZSGSRD 29887
17-03-18 00:04:08.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:08.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:08.958 -07 000000448 INF: FPGA: Recv ZPIEZORD 25186
17-03-18 00:04:08.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:08.968 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.411 V. Piezo Error = -10.3 V.
17-03-18 00:04:08.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29890 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29890 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29887 (-131.5 uncal um), Max = 29895 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 00:04:08.968 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29890, posNoise = 5, negNoise = 3
17-03-18 00:04:08.968 -07 000000610 INF: Z Motor: After move to -0.132337, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:08.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 00:04:08.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:08.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:08.968 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:08.968 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:08.968 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:04:08.968 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:04:08.968 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:08.968 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:04:08.968 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 00:04:08.968 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:04:08.968 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 00:04:08.968 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 00:04:08.978 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 00:04:08.978 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:04:08.988 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 00:04:08.988 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:04:08.998 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 00:04:08.998 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:04:08.998 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:04:08.998 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:04:09.008 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 00:04:09.008 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 41 ms.
17-03-18 00:04:09.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 29086 150\n [Camera]
17-03-18 00:04:09.208 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:04:09.898 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.003063,
17-03-18 00:04:10.248 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:04:10.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:04:10.248 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:10.248 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:10.248 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 00:04:10.258 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:04:10.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:04:10.258 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:10.258 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:10.258 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 00:04:10.438 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29086 1422
17-03-18 00:04:10.588 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:04:10.648 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 00:04:10.648 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 00:04:10.648 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:10.658 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 00:04:10.658 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 00:04:10.658 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 00:04:10.658 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 00:04:10.658 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:10.658 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:10.668 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 00:04:11.088 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:04:11.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:04:11.098 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:11.098 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:11.098 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 00:04:11.098 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:04:11.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:04:11.098 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:11.098 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:11.098 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 00:04:11.288 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:04:11.288 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:04:11.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 29086 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall
17-03-18 00:04:11.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:04:11.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.13234305292837. ------
17-03-18 00:04:11.288 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:11.488 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 00:04:11.488 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 00:04:11.488 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:11.488 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:11.488 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 00:04:11.488 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 00:04:11.488 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:11.498 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 00:04:11.498 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 00:04:11.498 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 00:04:11.508 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13845 mm
17-03-18 00:04:11.508 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:04:11.508 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:11.508 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 215 ms to get response, and 219 ms overall
17-03-18 00:04:11.508 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:04:11.508 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 00:04:11.508 -07 000000576 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 00:04:11.518 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:12.218 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 30244, sync = True, waitForSettling = False)
17-03-18 00:04:12.218 -07 000000547 INF: Z Motor: Moving to -0.138448 mm, started at -0.132343 mm, distance = -6.11 um
17-03-18 00:04:12.218 -07 000000547 INF: FPGA: Xmit ZDACW 30244\n [Z Motor]
17-03-18 00:04:13.218 -07 000000476 INF: FPGA: Recv YRDPOS 122698
17-03-18 00:04:13.218 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:04:13.218 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:04:13.218 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1704 ms to get response, and 1708 ms overall
17-03-18 00:04:13.218 -07 000000476 INF: FPGA: Recv ZDACW
17-03-18 00:04:13.218 -07 000000547 INF: FPGA: 'ZDACW 30244' command took 0 ms to send, 994 ms to get response, and 1002 ms overall
17-03-18 00:04:13.218 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:13.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:04:13.218 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1693 ms to get response, and 1706 ms overall
17-03-18 00:04:13.218 -07 000000576 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:13.218 -07 000000576 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:04:13.218 -07 000000576 INF: Y Motor: Moving 1330 steps2
17-03-18 00:04:13.218 -07 000000476 INF: FPGA: Recv ZDACR 30244
17-03-18 00:04:13.228 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:04:13.228 -07 000000547 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-18 00:04:13.228 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:04:13.598 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-18 00:04:13.598 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 00:04:13.638 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:13.638 -07 000000618 INF: FPGA: Recv YRDPOS 124381
17-03-18 00:04:13.648 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:13.648 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:13.648 -07 000000576 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 00:04:13.648 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.831 mm, average velocity = 2.171 mm/sec
17-03-18 00:04:14.598 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:14.598 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-18 00:04:14.608 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:14.608 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:14.628 -07 000000576 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:04:14.628 -07 000000576 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:04:14.628 -07 000000576 INF: Y Motor: Moved to 60.7329 after 3121 ms (table move)
17-03-18 00:04:14.638 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138448 mm (DAC = 30244)
17-03-18 00:04:14.638 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:14.638 -07 000000501 INF: FPGA: Recv ZSGSRD 30839
17-03-18 00:04:14.648 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:14.648 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:14.648 -07 000000618 INF: FPGA: Recv ZSGSRD 30843
17-03-18 00:04:14.658 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:14.658 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:14.658 -07 000000501 INF: FPGA: Recv ZSGSRD 30842
17-03-18 00:04:14.668 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:14.668 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:14.668 -07 000000501 INF: FPGA: Recv ZSGSRD 30840
17-03-18 00:04:14.678 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:14.678 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:14.678 -07 000000576 INF: FPGA: Recv ZSGSRD 30838
17-03-18 00:04:14.688 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:14.688 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:14.688 -07 000000501 INF: FPGA: Recv ZSGSRD 30846
17-03-18 00:04:14.698 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:14.698 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:14.698 -07 000000561 INF: FPGA: Recv ZSGSRD 30837
17-03-18 00:04:14.708 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:14.708 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:14.708 -07 000000547 INF: FPGA: Recv ZSGSRD 30837
17-03-18 00:04:14.718 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:14.718 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:14.718 -07 000000561 INF: FPGA: Recv ZSGSRD 30840
17-03-18 00:04:14.728 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:14.728 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:14.728 -07 000000431 INF: FPGA: Recv ZSGSRD 30848
17-03-18 00:04:14.738 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:14.738 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:14.738 -07 000000576 INF: FPGA: Recv ZPIEZORD 26519
17-03-18 00:04:14.748 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:14.748 -07 000000415 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.615 V. Piezo Error = -9.5 V.
17-03-18 00:04:14.748 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30841 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30840 (-137.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30837 (-137.6 uncal um), Max = 30848 (-137.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 00:04:14.748 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30841, posNoise = 7, negNoise = 4
17-03-18 00:04:14.748 -07 000000415 INF: Z Motor: After move to -0.138448, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:14.748 -07 000000415 INF: Z Motor: Settle wait time = 2420 ms, measure time = 109 ms (allowed 150 ms), total time = 2529 ms
17-03-18 00:04:14.748 -07 000000415 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 00:04:14.798 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3285 ms
17-03-18 00:04:14.798 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:04:14.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:14.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:14.798 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:14.798 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:14.798 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:04:14.798 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:14.798 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 00:04:14.798 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:04:14.808 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:04:14.808 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:04:14.808 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 00:04:14.808 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 00:04:14.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:04:14.858 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:04:15.158 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:04:15.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:04:15.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:04:15.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 00:04:15.198 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:04:15.198 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-18 00:04:15.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 00:04:15.278 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.008536,
17-03-18 00:04:15.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:04:15.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:15.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 00:04:15.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:04:15.398 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:15.398 -07 000000415 INF: Autofocus start
17-03-18 00:04:15.398 -07 000000415 INF: MeasureProfile start
17-03-18 00:04:15.398 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:15.408 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:04:15.408 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:04:15.408 -07 000000415 INF: MeasureProfile done
17-03-18 00:04:15.408 -07 000000415 INF: X=31  Z correction [um]=0.1251737
17-03-18 00:04:15.408 -07 000000415 INF: Autofocus finished
17-03-18 00:04:15.608 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:04:15.608 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:04:15.608 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.138452478675185. ----------
17-03-18 00:04:15.608 -07 000000610 INF: Cycle	81	Tile	2	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:04:15.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28784, sync = True, waitForSettling = True)
17-03-18 00:04:15.618 -07 000000610 INF: Z Motor: Moving to -0.131765 mm, started at -0.138452 mm, distance = 6.69 um
17-03-18 00:04:15.618 -07 000000610 INF: FPGA: Xmit ZDACW 28784\n [Z Motor]
17-03-18 00:04:15.618 -07 000000431 INF: FPGA: Recv ZDACW
17-03-18 00:04:15.628 -07 000000610 INF: FPGA: 'ZDACW 28784' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:15.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:15.628 -07 000000476 INF: FPGA: Recv ZDACR 28784
17-03-18 00:04:15.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:15.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:04:15.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:15.788 -07 000000501 INF: FPGA: Recv ZSGSRD 29796
17-03-18 00:04:15.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:15.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:15.798 -07 000000576 INF: FPGA: Recv ZSGSRD 29804
17-03-18 00:04:15.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:15.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:15.808 -07 000000547 INF: FPGA: Recv ZSGSRD 29797
17-03-18 00:04:15.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:15.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:15.818 -07 000000415 INF: FPGA: Recv ZSGSRD 29803
17-03-18 00:04:15.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:15.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:15.828 -07 000000431 INF: FPGA: Recv ZSGSRD 29797
17-03-18 00:04:15.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:15.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:15.838 -07 000000476 INF: FPGA: Recv ZSGSRD 29805
17-03-18 00:04:15.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:15.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:15.848 -07 000000618 INF: FPGA: Recv ZSGSRD 29802
17-03-18 00:04:15.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:15.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:15.858 -07 000000415 INF: FPGA: Recv ZSGSRD 29799
17-03-18 00:04:15.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:15.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:15.868 -07 000000501 INF: FPGA: Recv ZSGSRD 29803
17-03-18 00:04:15.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:15.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:15.878 -07 000000561 INF: FPGA: Recv ZSGSRD 29808
17-03-18 00:04:15.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:15.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:15.888 -07 000000547 INF: FPGA: Recv ZPIEZORD 25146
17-03-18 00:04:15.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:15.898 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -10.2 V.
17-03-18 00:04:15.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29801 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29802 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29796 (-131.0 uncal um), Max = 29808 (-131.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 00:04:15.898 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29801, posNoise = 7, negNoise = 5
17-03-18 00:04:15.898 -07 000000610 INF: Z Motor: After move to -0.131765, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:15.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 00:04:15.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:15.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:15.898 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:15.898 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:15.898 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:04:15.898 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:15.898 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:04:15.898 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:04:15.898 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:04:15.898 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:04:15.898 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 00:04:15.898 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:04:15.908 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:04:15.908 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:04:15.908 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:04:15.908 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:04:15.918 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:04:15.918 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:04:15.918 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:04:15.918 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:04:15.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28960 150\n [Camera]
17-03-18 00:04:16.128 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:04:17.128 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:04:17.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:04:17.158 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:04:17.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:04:17.158 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:17.158 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:17.158 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 00:04:17.168 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:04:17.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:04:17.168 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:17.168 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:17.168 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 00:04:17.358 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28960 1422
17-03-18 00:04:17.508 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:04:17.538 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 00:04:17.538 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 00:04:17.538 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:17.538 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 00:04:17.538 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 00:04:17.538 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:17.548 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:04:17.548 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 00:04:17.548 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 00:04:17.548 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 00:04:18.008 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:04:18.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:04:18.008 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:18.138 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:04:18.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:04:18.138 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:18.138 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 00:04:18.138 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:18.148 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:18.148 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 00:04:18.198 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-18 00:04:18.198 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:04:18.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28960 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-18 00:04:18.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:04:18.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.131771298047753. ------
17-03-18 00:04:18.198 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:18.198 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13839 mm
17-03-18 00:04:18.198 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:04:18.538 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 00:04:18.538 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 00:04:18.548 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:18.548 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 00:04:18.548 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 00:04:18.548 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:18.548 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:04:18.548 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:04:18.548 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 544 ms.
17-03-18 00:04:18.558 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 00:04:18.558 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 00:04:18.558 -07 000000547 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 00:04:18.558 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:18.568 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:18.568 -07 000000618 INF: FPGA: Recv YRDPOS 124382
17-03-18 00:04:18.568 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 362 ms to get response, and 364 ms overall
17-03-18 00:04:18.568 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 00:04:18.568 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:04:18.568 -07 000000547 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:18.568 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30231, sync = True, waitForSettling = False)
17-03-18 00:04:18.568 -07 000000618 INF: Z Motor: Moving to -0.138389 mm, started at -0.131771 mm, distance = -6.62 um
17-03-18 00:04:18.568 -07 000000547 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:04:18.568 -07 000000547 INF: Y Motor: Moving 1343 steps-20
17-03-18 00:04:18.578 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:04:18.588 -07 000000618 INF: FPGA: Xmit ZDACW 30231\n [Z Motor]
17-03-18 00:04:19.518 -07 000000458 INF: FPGA: Recv ZDACW
17-03-18 00:04:19.518 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:04:19.518 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-18 00:04:19.518 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 940 ms to get response, and 947 ms overall
17-03-18 00:04:19.518 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 930 ms to get response, and 942 ms overall
17-03-18 00:04:19.518 -07 000000618 INF: FPGA: 'ZDACW 30231' command took 0 ms to send, 920 ms to get response, and 946 ms overall
17-03-18 00:04:19.518 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:19.518 -07 000000561 INF: FPGA: Recv ZDACR 30231
17-03-18 00:04:19.528 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:19.528 -07 000000618 INF: Z Motor: MoveAbsStepped took 956 ms (did NOT wait for settling yet))
17-03-18 00:04:19.558 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:19.558 -07 000000618 INF: FPGA: Recv YRDPOS 126083
17-03-18 00:04:19.568 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:04:19.568 -07 000000547 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:19.568 -07 000000547 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 00:04:19.568 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 942 ms, distance = 0.840 mm, average velocity = 0.891 mm/sec
17-03-18 00:04:20.518 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:20.518 -07 000000502 INF: FPGA: Recv YRDPOS 126083
17-03-18 00:04:20.528 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:20.528 -07 000000547 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:20.548 -07 000000547 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:04:20.548 -07 000000547 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:04:20.548 -07 000000547 INF: Y Motor: Moved to 61.5640 after 1990 ms (table move)
17-03-18 00:04:20.558 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138389 mm (DAC = 30231)
17-03-18 00:04:20.558 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:20.558 -07 000000458 INF: FPGA: Recv ZSGSRD 30827
17-03-18 00:04:20.568 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:20.568 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:20.568 -07 000000547 INF: FPGA: Recv ZSGSRD 30832
17-03-18 00:04:20.578 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:20.578 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:20.578 -07 000000618 INF: FPGA: Recv ZSGSRD 30833
17-03-18 00:04:20.588 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:20.588 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:20.588 -07 000000458 INF: FPGA: Recv ZSGSRD 30834
17-03-18 00:04:20.598 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:20.598 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:20.598 -07 000000012 INF: FPGA: Recv ZSGSRD 30833
17-03-18 00:04:20.608 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:20.608 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:20.608 -07 000000547 INF: FPGA: Recv ZSGSRD 30833
17-03-18 00:04:20.618 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:20.618 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:20.618 -07 000000429 INF: FPGA: Recv ZSGSRD 30836
17-03-18 00:04:20.628 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:20.638 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:20.638 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.003063,
17-03-18 00:04:20.638 -07 000000561 INF: FPGA: Recv ZSGSRD 30829
17-03-18 00:04:20.648 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:04:20.668 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:20.668 -07 000000458 INF: FPGA: Recv ZSGSRD 30834
17-03-18 00:04:20.678 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:04:20.678 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:20.678 -07 000000429 INF: FPGA: Recv ZSGSRD 30835
17-03-18 00:04:20.688 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:20.698 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:20.698 -07 000000618 INF: FPGA: Recv ZPIEZORD 26559
17-03-18 00:04:20.708 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:04:20.708 -07 000000476 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.613 V. Piezo Error = -9.4 V.
17-03-18 00:04:20.708 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30833 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30833 (-137.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30827 (-137.6 uncal um), Max = 30836 (-137.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:04:20.708 -07 000000476 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30833, posNoise = 3, negNoise = 6
17-03-18 00:04:20.708 -07 000000476 INF: Z Motor: After move to -0.138389, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:20.708 -07 000000476 INF: Z Motor: Settle wait time = 1986 ms, measure time = 150 ms (allowed 150 ms), total time = 2136 ms
17-03-18 00:04:20.708 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2502 ms
17-03-18 00:04:20.708 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:04:20.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:20.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:20.708 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:20.708 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:20.708 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:04:20.708 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:20.708 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:04:20.708 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:04:20.718 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:04:20.718 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:04:20.728 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 00:04:20.728 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 00:04:20.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:04:20.778 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:04:21.078 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:04:21.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:04:21.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:04:21.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-18 00:04:21.118 -07 000000458 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:04:21.118 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-18 00:04:21.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 00:04:21.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:04:21.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:21.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:04:21.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 00:04:21.218 -07 000000429 INF: Autofocus start
17-03-18 00:04:21.218 -07 000000429 INF: MeasureProfile start
17-03-18 00:04:21.218 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:21.218 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:21.228 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:04:21.228 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:04:21.228 -07 000000429 INF: MeasureProfile done
17-03-18 00:04:21.228 -07 000000429 INF: X=16  Z correction [um]=0.0530179
17-03-18 00:04:21.228 -07 000000429 INF: Autofocus finished
17-03-18 00:04:21.428 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:04:21.428 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:04:21.428 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.138401084978051. ----------
17-03-18 00:04:21.428 -07 000000610 INF: Cycle	81	Tile	3	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:04:21.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28755, sync = True, waitForSettling = True)
17-03-18 00:04:21.438 -07 000000610 INF: Z Motor: Moving to -0.131632 mm, started at -0.138401 mm, distance = 6.77 um
17-03-18 00:04:21.438 -07 000000610 INF: FPGA: Xmit ZDACW 28755\n [Z Motor]
17-03-18 00:04:21.438 -07 000000458 INF: FPGA: Recv ZDACW
17-03-18 00:04:21.448 -07 000000610 INF: FPGA: 'ZDACW 28755' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:21.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:21.448 -07 000000429 INF: FPGA: Recv ZDACR 28755
17-03-18 00:04:21.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:21.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:04:21.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:21.608 -07 000000561 INF: FPGA: Recv ZSGSRD 29777
17-03-18 00:04:21.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:21.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:21.618 -07 000000618 INF: FPGA: Recv ZSGSRD 29783
17-03-18 00:04:21.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:21.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:21.628 -07 000000561 INF: FPGA: Recv ZSGSRD 29781
17-03-18 00:04:21.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:21.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:21.638 -07 000000547 INF: FPGA: Recv ZSGSRD 29782
17-03-18 00:04:21.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:21.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:21.648 -07 000000561 INF: FPGA: Recv ZSGSRD 29782
17-03-18 00:04:21.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:21.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:21.658 -07 000000458 INF: FPGA: Recv ZSGSRD 29775
17-03-18 00:04:21.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:21.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:21.668 -07 000000012 INF: FPGA: Recv ZSGSRD 29782
17-03-18 00:04:21.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:21.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:21.678 -07 000000547 INF: FPGA: Recv ZSGSRD 29781
17-03-18 00:04:21.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:21.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:21.688 -07 000000561 INF: FPGA: Recv ZSGSRD 29780
17-03-18 00:04:21.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:21.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:21.698 -07 000000618 INF: FPGA: Recv ZSGSRD 29779
17-03-18 00:04:21.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:21.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:21.708 -07 000000429 INF: FPGA: Recv ZPIEZORD 25152
17-03-18 00:04:21.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:21.718 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -10.1 V.
17-03-18 00:04:21.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29780 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29781 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29775 (-130.8 uncal um), Max = 29783 (-130.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 00:04:21.718 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29780, posNoise = 3, negNoise = 5
17-03-18 00:04:21.718 -07 000000610 INF: Z Motor: After move to -0.131632, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:21.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 00:04:21.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:21.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:21.718 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:21.718 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:04:21.718 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:21.718 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:04:21.718 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:21.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:04:21.718 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:04:21.718 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:04:21.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 00:04:21.718 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:04:21.728 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:04:21.728 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:04:21.728 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 00:04:21.728 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:04:21.738 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:04:21.738 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:04:21.738 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:04:21.738 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:04:21.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28932 150\n [Camera]
17-03-18 00:04:21.948 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:04:22.128 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:04:22.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:04:22.988 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1232
17-03-18 00:04:22.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1232
17-03-18 00:04:22.988 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:22.988 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1232
17-03-18 00:04:22.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1232
17-03-18 00:04:22.988 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:22.988 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:22.988 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-18 00:04:22.988 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:22.988 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-18 00:04:23.178 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28932 1422
17-03-18 00:04:23.318 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:04:23.378 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 00:04:23.378 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 00:04:23.378 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:23.388 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:23.388 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 00:04:23.388 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 00:04:23.388 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 00:04:23.388 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:23.388 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:23.398 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 00:04:23.828 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:04:23.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:04:23.828 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:23.928 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:04:23.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:04:23.938 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:23.938 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:23.938 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 00:04:23.938 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:23.938 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1403846816, 0x0, 418435064) start.
17-03-18 00:04:24.018 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-18 00:04:24.018 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:04:24.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28932 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-18 00:04:24.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:04:24.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.131636389592776. ------
17-03-18 00:04:24.018 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13804 mm
17-03-18 00:04:24.018 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:04:24.018 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:24.318 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1403846816, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 00:04:24.318 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 00:04:24.318 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:24.318 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 00:04:24.318 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 00:04:24.318 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:24.328 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 00:04:24.328 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 00:04:24.328 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-18 00:04:24.328 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 00:04:24.338 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 00:04:24.338 -07 000000561 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 00:04:24.338 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:24.348 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:24.348 -07 000000502 INF: FPGA: Recv YRDPOS 126083
17-03-18 00:04:24.348 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 320 ms to get response, and 322 ms overall
17-03-18 00:04:24.348 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:04:24.348 -07 000000561 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:24.348 -07 000000561 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:04:24.348 -07 000000561 INF: Y Motor: Moving 1342 steps-18
17-03-18 00:04:24.348 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30155, sync = True, waitForSettling = False)
17-03-18 00:04:24.348 -07 000000502 INF: Z Motor: Moving to -0.138041 mm, started at -0.131636 mm, distance = -6.40 um
17-03-18 00:04:24.348 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:04:24.358 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:04:24.368 -07 000000502 INF: FPGA: Xmit ZDACW 30155\n [Z Motor]
17-03-18 00:04:25.218 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 00:04:25.218 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:04:25.218 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 00:04:25.218 -07 000000502 INF: FPGA: 'ZDACW 30155' command took 0 ms to send, 840 ms to get response, and 869 ms overall
17-03-18 00:04:25.218 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:25.218 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 861 ms to get response, and 870 ms overall
17-03-18 00:04:25.218 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 851 ms to get response, and 869 ms overall
17-03-18 00:04:25.218 -07 000000626 INF: FPGA: Recv ZDACR 30155
17-03-18 00:04:25.228 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:25.228 -07 000000502 INF: Z Motor: MoveAbsStepped took 878 ms (did NOT wait for settling yet))
17-03-18 00:04:25.258 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:25.258 -07 000000626 INF: FPGA: Recv YRDPOS 127786
17-03-18 00:04:25.268 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:04:25.268 -07 000000561 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:25.268 -07 000000561 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 00:04:25.268 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 870 ms, distance = 0.839 mm, average velocity = 0.964 mm/sec
17-03-18 00:04:26.038 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.008536,
17-03-18 00:04:26.218 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:26.218 -07 000000547 INF: FPGA: Recv YRDPOS 127786
17-03-18 00:04:26.228 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:26.228 -07 000000561 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:26.248 -07 000000561 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:04:26.248 -07 000000561 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:04:26.248 -07 000000561 INF: Y Motor: Moved to 62.3955 after 1910 ms (table move)
17-03-18 00:04:26.248 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138041 mm (DAC = 30155)
17-03-18 00:04:26.248 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:26.258 -07 000000431 INF: FPGA: Recv ZSGSRD 30777
17-03-18 00:04:26.258 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-18 00:04:26.258 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:26.258 -07 000000547 INF: FPGA: Recv ZSGSRD 30774
17-03-18 00:04:26.268 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:04:26.268 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:26.268 -07 000000431 INF: FPGA: Recv ZSGSRD 30776
17-03-18 00:04:26.278 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:26.278 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:26.278 -07 000000502 INF: FPGA: Recv ZSGSRD 30775
17-03-18 00:04:26.288 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:26.288 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:26.288 -07 000000626 INF: FPGA: Recv ZSGSRD 30780
17-03-18 00:04:26.298 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:26.298 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:26.298 -07 000000415 INF: FPGA: Recv ZSGSRD 30776
17-03-18 00:04:26.308 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:26.308 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:26.308 -07 000000501 INF: FPGA: Recv ZSGSRD 30776
17-03-18 00:04:26.318 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:26.318 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:26.318 -07 000000626 INF: FPGA: Recv ZSGSRD 30779
17-03-18 00:04:26.328 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:26.328 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:26.328 -07 000000501 INF: FPGA: Recv ZSGSRD 30779
17-03-18 00:04:26.338 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:26.338 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:26.338 -07 000000431 INF: FPGA: Recv ZSGSRD 30783
17-03-18 00:04:26.348 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:26.348 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:26.348 -07 000000547 INF: FPGA: Recv ZPIEZORD 26482
17-03-18 00:04:26.358 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:26.358 -07 000000476 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -9.4 V.
17-03-18 00:04:26.358 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30778 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30776 (-137.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30774 (-137.2 uncal um), Max = 30783 (-137.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 00:04:26.358 -07 000000476 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30778, posNoise = 5, negNoise = 4
17-03-18 00:04:26.358 -07 000000476 INF: Z Motor: After move to -0.138041, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:26.358 -07 000000476 INF: Z Motor: Settle wait time = 1907 ms, measure time = 102 ms (allowed 150 ms), total time = 2009 ms
17-03-18 00:04:26.358 -07 000000476 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 00:04:26.408 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2382 ms
17-03-18 00:04:26.408 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:04:26.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:26.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:26.408 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:26.408 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:04:26.408 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:26.408 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:26.408 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:04:26.408 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:04:26.418 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:04:26.418 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:04:26.428 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 00:04:26.428 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 00:04:26.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:04:26.478 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:04:26.768 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:04:26.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:04:26.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:04:26.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1456144144, 0x0, 559484976) start.
17-03-18 00:04:26.808 -07 000000476 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:04:26.818 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-18 00:04:26.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 00:04:26.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1456144144, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:04:26.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:26.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:04:26.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:04:26.918 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:26.918 -07 000000502 INF: Autofocus start
17-03-18 00:04:26.918 -07 000000502 INF: MeasureProfile start
17-03-18 00:04:26.918 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:26.928 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 00:04:26.928 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:04:26.928 -07 000000502 INF: MeasureProfile done
17-03-18 00:04:26.928 -07 000000502 INF: X=32  Z correction [um]=0.1299841
17-03-18 00:04:26.928 -07 000000502 INF: Autofocus finished
17-03-18 00:04:27.128 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:04:27.128 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:04:27.128 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:04:27.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:04:27.128 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138047753310254. ----------
17-03-18 00:04:27.128 -07 000000610 INF: Cycle	81	Tile	4	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:04:27.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28696, sync = True, waitForSettling = True)
17-03-18 00:04:27.138 -07 000000610 INF: Z Motor: Moving to -0.131362 mm, started at -0.138048 mm, distance = 6.69 um
17-03-18 00:04:27.138 -07 000000610 INF: FPGA: Xmit ZDACW 28696\n [Z Motor]
17-03-18 00:04:27.138 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 00:04:27.148 -07 000000610 INF: FPGA: 'ZDACW 28696' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:27.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:27.148 -07 000000576 INF: FPGA: Recv ZDACR 28696
17-03-18 00:04:27.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:27.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:04:27.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:27.308 -07 000000501 INF: FPGA: Recv ZSGSRD 29735
17-03-18 00:04:27.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:27.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:27.318 -07 000000476 INF: FPGA: Recv ZSGSRD 29740
17-03-18 00:04:27.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:27.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:27.328 -07 000000415 INF: FPGA: Recv ZSGSRD 29739
17-03-18 00:04:27.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:27.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:27.338 -07 000000476 INF: FPGA: Recv ZSGSRD 29740
17-03-18 00:04:27.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:27.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:27.348 -07 000000501 INF: FPGA: Recv ZSGSRD 29737
17-03-18 00:04:27.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:27.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:27.358 -07 000000476 INF: FPGA: Recv ZSGSRD 29730
17-03-18 00:04:27.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:27.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:27.368 -07 000000561 INF: FPGA: Recv ZSGSRD 29737
17-03-18 00:04:27.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:27.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:27.378 -07 000000547 INF: FPGA: Recv ZSGSRD 29739
17-03-18 00:04:27.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:27.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:27.388 -07 000000431 INF: FPGA: Recv ZSGSRD 29739
17-03-18 00:04:27.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:27.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:27.398 -07 000000547 INF: FPGA: Recv ZSGSRD 29740
17-03-18 00:04:27.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:27.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:27.408 -07 000000502 INF: FPGA: Recv ZPIEZORD 25126
17-03-18 00:04:27.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:27.418 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -10.1 V.
17-03-18 00:04:27.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29738 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29739 (-130.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29730 (-130.5 uncal um), Max = 29740 (-130.6 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 00:04:27.418 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29738, posNoise = 2, negNoise = 8
17-03-18 00:04:27.418 -07 000000610 INF: Z Motor: After move to -0.131362, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:27.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 00:04:27.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:27.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:27.418 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:27.418 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:04:27.418 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:27.418 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:04:27.418 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:27.418 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:04:27.418 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:04:27.418 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:04:27.418 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:04:27.418 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:04:27.428 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:04:27.428 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:04:27.428 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:04:27.428 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:04:27.438 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:04:27.438 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:04:27.438 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:04:27.438 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:04:27.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28872 150\n [Camera]
17-03-18 00:04:27.648 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:04:28.688 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:04:28.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:04:28.688 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:28.688 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:04:28.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:04:28.688 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:28.688 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:28.688 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 00:04:28.698 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:28.698 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 00:04:28.878 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28872 1422
17-03-18 00:04:29.028 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:04:29.078 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 00:04:29.078 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 00:04:29.078 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:29.088 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:29.088 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 00:04:29.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 500 ms.
17-03-18 00:04:29.198 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-18 00:04:29.198 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:29.198 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 00:04:29.208 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-18 00:04:29.528 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:04:29.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:04:29.528 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:29.528 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:04:29.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:04:29.528 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:29.528 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:29.528 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 00:04:29.538 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:29.538 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 00:04:29.718 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:04:29.718 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:04:29.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28872 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-18 00:04:29.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:04:29.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131366572682822. ------
17-03-18 00:04:29.718 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13809 mm
17-03-18 00:04:29.718 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:04:29.718 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:29.728 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:29.728 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 00:04:29.728 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:04:29.728 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 00:04:29.728 -07 000000431 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 00:04:29.728 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30165, sync = True, waitForSettling = False)
17-03-18 00:04:29.728 -07 000000415 INF: Z Motor: Moving to -0.138087 mm, started at -0.131367 mm, distance = -6.72 um
17-03-18 00:04:29.738 -07 000000415 INF: FPGA: Xmit ZDACW 30165\n [Z Motor]
17-03-18 00:04:29.738 -07 000000458 INF: FPGA: Recv ZDACW
17-03-18 00:04:29.748 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:29.748 -07 000000415 INF: FPGA: 'ZDACW 30165' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 00:04:29.748 -07 000000547 INF: FPGA: Recv YRDPOS 127787
17-03-18 00:04:29.758 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 00:04:29.758 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:29.758 -07 000000431 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:29.758 -07 000000431 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:04:29.758 -07 000000431 INF: Y Motor: Moving 1339 steps-15
17-03-18 00:04:29.758 -07 000000424 INF: FPGA: Recv ZDACR 30165
17-03-18 00:04:29.768 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:04:29.768 -07 000000415 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 00:04:29.768 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:04:29.928 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:04:29.928 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 00:04:29.938 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 00:04:29.938 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 00:04:29.938 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:29.938 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 00:04:29.938 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 00:04:29.938 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:29.938 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:04:29.938 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 00:04:29.938 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:04:29.948 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 00:04:30.138 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-18 00:04:30.138 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 00:04:30.188 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:30.188 -07 000000424 INF: FPGA: Recv YRDPOS 129482
17-03-18 00:04:30.198 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:30.198 -07 000000431 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:30.198 -07 000000431 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 00:04:30.198 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-18 00:04:31.148 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:31.148 -07 000000476 INF: FPGA: Recv YRDPOS 129483
17-03-18 00:04:31.158 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:31.158 -07 000000431 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:31.178 -07 000000431 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:04:31.178 -07 000000431 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 00:04:31.178 -07 000000431 INF: Y Motor: Moved to 63.2241 after 1453 ms (table move)
17-03-18 00:04:31.188 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138087 mm (DAC = 30165)
17-03-18 00:04:31.188 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:31.188 -07 000000424 INF: FPGA: Recv ZSGSRD 30789
17-03-18 00:04:31.198 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:04:31.198 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:31.198 -07 000000424 INF: FPGA: Recv ZSGSRD 30786
17-03-18 00:04:31.208 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:31.208 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:31.208 -07 000000561 INF: FPGA: Recv ZSGSRD 30792
17-03-18 00:04:31.218 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:31.218 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:31.218 -07 000000476 INF: FPGA: Recv ZSGSRD 30795
17-03-18 00:04:31.228 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:31.228 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:31.228 -07 000000424 INF: FPGA: Recv ZSGSRD 30784
17-03-18 00:04:31.238 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:31.238 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:31.238 -07 000000431 INF: FPGA: Recv ZSGSRD 30786
17-03-18 00:04:31.248 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:31.248 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:31.248 -07 000000424 INF: FPGA: Recv ZSGSRD 30780
17-03-18 00:04:31.258 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:31.258 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:31.258 -07 000000431 INF: FPGA: Recv ZSGSRD 30787
17-03-18 00:04:31.268 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:31.268 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:31.268 -07 000000424 INF: FPGA: Recv ZSGSRD 30781
17-03-18 00:04:31.278 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:31.278 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:31.278 -07 000000431 INF: FPGA: Recv ZSGSRD 30788
17-03-18 00:04:31.288 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:31.288 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:31.288 -07 000000431 INF: FPGA: Recv ZPIEZORD 26535
17-03-18 00:04:31.298 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:31.298 -07 000000501 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.603 V. Piezo Error = -9.3 V.
17-03-18 00:04:31.298 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30787 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30786 (-137.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30780 (-137.3 uncal um), Max = 30795 (-137.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 00:04:31.298 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30787, posNoise = 8, negNoise = 7
17-03-18 00:04:31.298 -07 000000501 INF: Z Motor: After move to -0.138087, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:31.298 -07 000000501 INF: Z Motor: Settle wait time = 1457 ms, measure time = 108 ms (allowed 150 ms), total time = 1565 ms
17-03-18 00:04:31.298 -07 000000501 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 00:04:31.348 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 00:04:31.348 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:04:31.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:31.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:31.348 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:31.348 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:31.348 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:04:31.348 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:31.348 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:04:31.348 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:04:31.358 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:04:31.358 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:04:31.368 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-18 00:04:31.368 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 00:04:31.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:04:31.398 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.99219,
17-03-18 00:04:31.418 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:04:31.718 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:04:31.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:04:31.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:04:31.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-18 00:04:31.758 -07 000000424 INF: FPGA: Recv @CAMSNAP 383
17-03-18 00:04:31.758 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 00:04:31.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 387 ms overall
17-03-18 00:04:31.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 00:04:31.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:31.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:04:31.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:04:31.858 -07 000000561 INF: Autofocus start
17-03-18 00:04:31.858 -07 000000561 INF: MeasureProfile start
17-03-18 00:04:31.858 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:31.858 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:31.868 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:04:31.868 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:04:31.868 -07 000000561 INF: MeasureProfile done
17-03-18 00:04:31.868 -07 000000561 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 00:04:31.868 -07 000000561 INF: Autofocus finished
17-03-18 00:04:32.068 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:04:32.068 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:04:32.068 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.13810557121953. ----------
17-03-18 00:04:32.068 -07 000000610 INF: Cycle	81	Tile	5	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:04:32.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28660, sync = True, waitForSettling = True)
17-03-18 00:04:32.068 -07 000000610 INF: Z Motor: Moving to -0.131197 mm, started at -0.138106 mm, distance = 6.91 um
17-03-18 00:04:32.068 -07 000000610 INF: FPGA: Xmit ZDACW 28660\n [Z Motor]
17-03-18 00:04:32.078 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 00:04:32.088 -07 000000610 INF: FPGA: 'ZDACW 28660' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:32.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:32.088 -07 000000561 INF: FPGA: Recv ZDACR 28660
17-03-18 00:04:32.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:32.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:04:32.128 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:04:32.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:04:32.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:32.248 -07 000000431 INF: FPGA: Recv ZSGSRD 29717
17-03-18 00:04:32.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:32.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:32.258 -07 000000431 INF: FPGA: Recv ZSGSRD 29713
17-03-18 00:04:32.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:32.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:32.268 -07 000000429 INF: FPGA: Recv ZSGSRD 29712
17-03-18 00:04:32.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:32.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:32.278 -07 000000429 INF: FPGA: Recv ZSGSRD 29706
17-03-18 00:04:32.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:32.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:32.288 -07 000000431 INF: FPGA: Recv ZSGSRD 29717
17-03-18 00:04:32.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:32.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:32.298 -07 000000431 INF: FPGA: Recv ZSGSRD 29713
17-03-18 00:04:32.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:32.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:32.308 -07 000000431 INF: FPGA: Recv ZSGSRD 29713
17-03-18 00:04:32.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:32.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:32.318 -07 000000012 INF: FPGA: Recv ZSGSRD 29717
17-03-18 00:04:32.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:32.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:32.328 -07 000000424 INF: FPGA: Recv ZSGSRD 29710
17-03-18 00:04:32.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:32.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:32.338 -07 000000501 INF: FPGA: Recv ZSGSRD 29715
17-03-18 00:04:32.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:32.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:32.348 -07 000000501 INF: FPGA: Recv ZPIEZORD 25110
17-03-18 00:04:32.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:32.358 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -10.1 V.
17-03-18 00:04:32.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29713 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29713 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29706 (-130.4 uncal um), Max = 29717 (-130.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 00:04:32.358 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29713, posNoise = 4, negNoise = 7
17-03-18 00:04:32.358 -07 000000610 INF: Z Motor: After move to -0.131197, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:32.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 00:04:32.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:32.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:32.358 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:32.358 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:32.358 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:04:32.358 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:32.358 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:04:32.358 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:04:32.358 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 00:04:32.358 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:04:32.358 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:04:32.358 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:04:32.368 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:04:32.368 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:04:32.368 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 00:04:32.368 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:04:32.378 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 00:04:32.378 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:04:32.378 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 00:04:32.378 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:04:32.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28837 150\n [Camera]
17-03-18 00:04:32.588 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:04:33.618 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:04:33.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:04:33.618 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:33.618 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:04:33.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:04:33.628 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:33.628 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:33.628 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 00:04:33.628 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:33.628 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 00:04:33.808 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28837 1422
17-03-18 00:04:33.958 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:04:34.008 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 00:04:34.008 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 00:04:34.008 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:34.008 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:34.008 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 00:04:34.008 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 00:04:34.008 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:34.008 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:34.018 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 00:04:34.018 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 00:04:34.458 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2073
17-03-18 00:04:34.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2073
17-03-18 00:04:34.468 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:34.468 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2073
17-03-18 00:04:34.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2073
17-03-18 00:04:34.468 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:34.468 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:34.468 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 00:04:34.468 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:34.468 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 00:04:34.648 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:04:34.658 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:04:34.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28837 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall
17-03-18 00:04:34.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:04:34.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131205967379278. ------
17-03-18 00:04:34.658 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:34.658 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13764 mm
17-03-18 00:04:34.658 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:04:34.658 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 00:04:34.658 -07 000000448 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 00:04:34.658 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30068, sync = True, waitForSettling = False)
17-03-18 00:04:34.658 -07 000000502 INF: Z Motor: Moving to -0.137642 mm, started at -0.131206 mm, distance = -6.44 um
17-03-18 00:04:34.658 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:34.668 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:04:34.668 -07 000000502 INF: FPGA: Xmit ZDACW 30068\n [Z Motor]
17-03-18 00:04:34.668 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 00:04:34.678 -07 000000502 INF: FPGA: 'ZDACW 30068' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 00:04:34.678 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:34.678 -07 000000431 INF: FPGA: Recv YRDPOS 129483
17-03-18 00:04:34.688 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:04:34.688 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 00:04:34.688 -07 000000448 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:34.688 -07 000000448 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:04:34.688 -07 000000448 INF: Y Motor: Moving 1342 steps-18
17-03-18 00:04:34.698 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:34.698 -07 000000618 INF: FPGA: Recv ZDACR 30068
17-03-18 00:04:34.708 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:04:34.708 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:04:34.708 -07 000000502 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 00:04:34.868 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 00:04:34.868 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 00:04:34.868 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:34.878 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:34.878 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 00:04:34.878 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 00:04:34.878 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 00:04:34.878 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:34.878 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:34.888 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 00:04:34.888 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:04:34.888 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 00:04:35.088 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-18 00:04:35.088 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-18 00:04:35.128 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:35.128 -07 000000502 INF: FPGA: Recv YRDPOS 131188
17-03-18 00:04:35.138 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:04:35.138 -07 000000448 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:35.138 -07 000000448 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 00:04:35.138 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.838 mm, average velocity = 2.101 mm/sec
17-03-18 00:04:36.088 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:36.088 -07 000000618 INF: FPGA: Recv YRDPOS 131189
17-03-18 00:04:36.098 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:36.098 -07 000000448 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:36.118 -07 000000448 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:04:36.118 -07 000000448 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 00:04:36.118 -07 000000448 INF: Y Motor: Moved to 64.0571 after 1457 ms (table move)
17-03-18 00:04:36.118 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137642 mm (DAC = 30068)
17-03-18 00:04:36.118 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:36.128 -07 000000502 INF: FPGA: Recv ZSGSRD 30721
17-03-18 00:04:36.128 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 00:04:36.128 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:36.128 -07 000000448 INF: FPGA: Recv ZSGSRD 30719
17-03-18 00:04:36.138 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:04:36.138 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:36.138 -07 000000501 INF: FPGA: Recv ZSGSRD 30718
17-03-18 00:04:36.148 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:36.148 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:36.148 -07 000000618 INF: FPGA: Recv ZSGSRD 30718
17-03-18 00:04:36.158 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:36.158 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:36.158 -07 000000502 INF: FPGA: Recv ZSGSRD 30718
17-03-18 00:04:36.168 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:36.168 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:36.168 -07 000000502 INF: FPGA: Recv ZSGSRD 30716
17-03-18 00:04:36.178 -07 000000429 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:36.178 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:36.178 -07 000000618 INF: FPGA: Recv ZSGSRD 30713
17-03-18 00:04:36.188 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:36.188 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:36.188 -07 000000502 INF: FPGA: Recv ZSGSRD 30712
17-03-18 00:04:36.198 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:36.198 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:36.198 -07 000000561 INF: FPGA: Recv ZSGSRD 30710
17-03-18 00:04:36.208 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:36.208 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:36.208 -07 000000502 INF: FPGA: Recv ZSGSRD 30722
17-03-18 00:04:36.218 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:36.218 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:36.218 -07 000000502 INF: FPGA: Recv ZPIEZORD 26467
17-03-18 00:04:36.228 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:36.228 -07 000000429 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.588 V. Piezo Error = -9.3 V.
17-03-18 00:04:36.228 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30717 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30718 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30710 (-136.8 uncal um), Max = 30722 (-136.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 00:04:36.228 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30717, posNoise = 5, negNoise = 7
17-03-18 00:04:36.228 -07 000000429 INF: Z Motor: After move to -0.137642, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:36.228 -07 000000429 INF: Z Motor: Settle wait time = 1460 ms, measure time = 102 ms (allowed 150 ms), total time = 1562 ms
17-03-18 00:04:36.228 -07 000000429 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 00:04:36.278 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 00:04:36.278 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:04:36.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:36.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:36.278 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:36.278 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:36.278 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:04:36.278 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:36.278 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:04:36.278 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:04:36.288 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 00:04:36.288 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:04:36.298 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 00:04:36.298 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 00:04:36.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:04:36.348 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:04:36.648 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:04:36.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:04:36.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:04:36.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) start.
17-03-18 00:04:36.688 -07 000000618 INF: FPGA: Recv @CAMSNAP 382
17-03-18 00:04:36.688 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-18 00:04:36.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 386 ms overall
17-03-18 00:04:36.758 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.986717,
17-03-18 00:04:36.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 00:04:36.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:36.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 00:04:36.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 00:04:36.788 -07 000000561 INF: Autofocus start
17-03-18 00:04:36.788 -07 000000561 INF: MeasureProfile start
17-03-18 00:04:36.798 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:36.798 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:36.798 -07 000000561 INF: MeasureProfile done
17-03-18 00:04:36.798 -07 000000561 INF: X=0  Z correction [um]=-0.02394831
17-03-18 00:04:36.798 -07 000000561 INF: Autofocus finished
17-03-18 00:04:36.808 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 00:04:36.808 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:04:37.008 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:04:37.008 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:04:37.008 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.137655876369606. ----------
17-03-18 00:04:37.008 -07 000000610 INF: Cycle	81	Tile	6	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:04:37.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28576, sync = True, waitForSettling = True)
17-03-18 00:04:37.018 -07 000000610 INF: Z Motor: Moving to -0.130813 mm, started at -0.137656 mm, distance = 6.84 um
17-03-18 00:04:37.018 -07 000000610 INF: FPGA: Xmit ZDACW 28576\n [Z Motor]
17-03-18 00:04:37.018 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 00:04:37.028 -07 000000610 INF: FPGA: 'ZDACW 28576' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:37.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:37.028 -07 000000502 INF: FPGA: Recv ZDACR 28576
17-03-18 00:04:37.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:37.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:04:37.128 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:04:37.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:04:37.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:37.188 -07 000000561 INF: FPGA: Recv ZSGSRD 29655
17-03-18 00:04:37.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:37.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:37.198 -07 000000429 INF: FPGA: Recv ZSGSRD 29655
17-03-18 00:04:37.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:37.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:37.208 -07 000000431 INF: FPGA: Recv ZSGSRD 29650
17-03-18 00:04:37.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:37.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:37.218 -07 000000502 INF: FPGA: Recv ZSGSRD 29651
17-03-18 00:04:37.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:37.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:37.228 -07 000000458 INF: FPGA: Recv ZSGSRD 29657
17-03-18 00:04:37.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:37.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:37.238 -07 000000502 INF: FPGA: Recv ZSGSRD 29653
17-03-18 00:04:37.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:37.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:37.248 -07 000000561 INF: FPGA: Recv ZSGSRD 29650
17-03-18 00:04:37.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:37.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:37.258 -07 000000429 INF: FPGA: Recv ZSGSRD 29655
17-03-18 00:04:37.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:37.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:37.268 -07 000000561 INF: FPGA: Recv ZSGSRD 29658
17-03-18 00:04:37.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:37.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:37.278 -07 000000458 INF: FPGA: Recv ZSGSRD 29648
17-03-18 00:04:37.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:37.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:37.288 -07 000000431 INF: FPGA: Recv ZPIEZORD 25027
17-03-18 00:04:37.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:37.298 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.360 V. Piezo Error = -10.1 V.
17-03-18 00:04:37.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29653 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29654 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29648 (-130.0 uncal um), Max = 29658 (-130.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 00:04:37.298 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29653, posNoise = 5, negNoise = 5
17-03-18 00:04:37.298 -07 000000610 INF: Z Motor: After move to -0.130813, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:37.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 00:04:37.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:37.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:37.298 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:37.298 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:37.298 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:04:37.298 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:37.298 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:04:37.298 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:04:37.298 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:04:37.298 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:04:37.298 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:04:37.298 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:04:37.308 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:04:37.308 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:04:37.308 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 00:04:37.308 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:04:37.318 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 00:04:37.318 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:04:37.318 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 00:04:37.318 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 00:04:37.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28752 150\n [Camera]
17-03-18 00:04:37.518 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:04:38.558 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:04:38.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:04:38.558 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:38.558 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:38.558 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 00:04:38.568 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:04:38.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:04:38.568 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:38.568 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:38.568 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 00:04:38.748 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28752 1422
17-03-18 00:04:38.898 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:04:38.968 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 00:04:38.968 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 00:04:38.968 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:38.968 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 00:04:38.968 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 00:04:38.968 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:38.968 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:04:38.968 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 00:04:38.968 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:04:38.978 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 00:04:39.398 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:04:39.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:04:39.398 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:39.408 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:04:39.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:04:39.408 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:39.408 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:39.408 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:39.408 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 00:04:39.408 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 00:04:39.588 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 2264
17-03-18 00:04:39.598 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:04:39.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28752 150' command took 2 ms to send, 2259 ms to get response, and 2272 ms overall
17-03-18 00:04:39.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:04:39.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.130820514650773. ------
17-03-18 00:04:39.598 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:39.598 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13732 mm
17-03-18 00:04:39.598 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:04:39.598 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 00:04:39.598 -07 000000458 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 00:04:39.598 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29999, sync = True, waitForSettling = False)
17-03-18 00:04:39.598 -07 000000618 INF: Z Motor: Moving to -0.137327 mm, started at -0.130821 mm, distance = -6.51 um
17-03-18 00:04:39.598 -07 000000586 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:39.608 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:04:39.608 -07 000000618 INF: FPGA: Xmit ZDACW 29999\n [Z Motor]
17-03-18 00:04:39.608 -07 000000586 INF: FPGA: Recv ZDACW
17-03-18 00:04:39.618 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:39.618 -07 000000618 INF: FPGA: 'ZDACW 29999' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 00:04:39.618 -07 000000429 INF: FPGA: Recv YRDPOS 131189
17-03-18 00:04:39.628 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 00:04:39.628 -07 000000458 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:39.628 -07 000000458 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:04:39.628 -07 000000458 INF: Y Motor: Moving 1337 steps-12
17-03-18 00:04:39.628 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:04:39.638 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:39.638 -07 000000415 INF: FPGA: Recv ZDACR 29999
17-03-18 00:04:39.648 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:04:39.648 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 00:04:39.648 -07 000000618 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 00:04:39.808 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 00:04:39.808 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 00:04:39.808 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:39.808 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 00:04:39.808 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 00:04:39.808 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:39.818 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:04:39.818 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 00:04:39.818 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:04:39.828 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 00:04:39.828 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:04:39.828 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 00:04:40.018 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 00:04:40.018 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 00:04:40.058 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:40.068 -07 000000429 INF: FPGA: Recv YRDPOS 132872
17-03-18 00:04:40.068 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 00:04:40.068 -07 000000458 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:40.068 -07 000000458 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 00:04:40.068 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-18 00:04:41.018 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:41.018 -07 000000429 INF: FPGA: Recv YRDPOS 132872
17-03-18 00:04:41.028 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:41.028 -07 000000458 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:41.048 -07 000000458 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:04:41.048 -07 000000458 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:04:41.048 -07 000000458 INF: Y Motor: Moved to 64.8789 after 1450 ms (table move)
17-03-18 00:04:41.058 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137327 mm (DAC = 29999)
17-03-18 00:04:41.058 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:41.058 -07 000000618 INF: FPGA: Recv ZSGSRD 30667
17-03-18 00:04:41.068 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:41.068 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:41.068 -07 000000415 INF: FPGA: Recv ZSGSRD 30663
17-03-18 00:04:41.078 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:41.078 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:41.078 -07 000000458 INF: FPGA: Recv ZSGSRD 30663
17-03-18 00:04:41.088 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:41.088 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:41.088 -07 000000502 INF: FPGA: Recv ZSGSRD 30669
17-03-18 00:04:41.098 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:41.098 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:41.098 -07 000000458 INF: FPGA: Recv ZSGSRD 30675
17-03-18 00:04:41.108 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:41.108 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:41.108 -07 000000502 INF: FPGA: Recv ZSGSRD 30667
17-03-18 00:04:41.118 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:41.118 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:41.118 -07 000000415 INF: FPGA: Recv ZSGSRD 30666
17-03-18 00:04:41.128 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:41.128 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:41.128 -07 000000502 INF: FPGA: Recv ZSGSRD 30660
17-03-18 00:04:41.138 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:41.138 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:41.138 -07 000000431 INF: FPGA: Recv ZSGSRD 30661
17-03-18 00:04:41.148 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:41.148 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:41.148 -07 000000415 INF: FPGA: Recv ZSGSRD 30667
17-03-18 00:04:41.158 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:41.158 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:41.158 -07 000000618 INF: FPGA: Recv ZPIEZORD 26415
17-03-18 00:04:41.168 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:41.168 -07 000000501 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.578 V. Piezo Error = -9.3 V.
17-03-18 00:04:41.168 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30666 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30666 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30660 (-136.5 uncal um), Max = 30675 (-136.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:04:41.168 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30666, posNoise = 9, negNoise = 6
17-03-18 00:04:41.168 -07 000000501 INF: Z Motor: After move to -0.137327, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:41.168 -07 000000501 INF: Z Motor: Settle wait time = 1453 ms, measure time = 109 ms (allowed 150 ms), total time = 1562 ms
17-03-18 00:04:41.168 -07 000000501 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 00:04:41.218 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 00:04:41.218 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:04:41.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:41.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:41.228 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:41.228 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:41.228 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:04:41.228 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:41.228 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 00:04:41.228 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:04:41.238 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:04:41.238 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:04:41.248 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 00:04:41.248 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 00:04:41.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:04:41.288 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:04:41.588 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:04:41.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:04:41.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:04:41.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1470820224, 0x0, 559484976) start.
17-03-18 00:04:41.628 -07 000000429 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:04:41.628 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-18 00:04:41.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 00:04:41.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1470820224, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:04:41.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:41.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:04:41.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:04:41.828 -07 000000547 INF: Autofocus start
17-03-18 00:04:41.828 -07 000000547 INF: MeasureProfile start
17-03-18 00:04:41.838 -07 000000547 INF: MeasureProfile done
17-03-18 00:04:41.838 -07 000000547 INF: X=32  Z correction [um]=0.1299841
17-03-18 00:04:41.838 -07 000000547 INF: Autofocus finished
17-03-18 00:04:41.848 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:41.848 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:41.858 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 00:04:41.858 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:04:42.058 -07 000000586 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:04:42.058 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:04:42.058 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137328241550377. ----------
17-03-18 00:04:42.058 -07 000000610 INF: Cycle	81	Tile	7	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:04:42.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28540, sync = True, waitForSettling = True)
17-03-18 00:04:42.068 -07 000000610 INF: Z Motor: Moving to -0.130648 mm, started at -0.137328 mm, distance = 6.68 um
17-03-18 00:04:42.068 -07 000000610 INF: FPGA: Xmit ZDACW 28540\n [Z Motor]
17-03-18 00:04:42.068 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 00:04:42.078 -07 000000610 INF: FPGA: 'ZDACW 28540' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:42.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:42.078 -07 000000458 INF: FPGA: Recv ZDACR 28540
17-03-18 00:04:42.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:42.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:04:42.118 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.98264,
17-03-18 00:04:42.128 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:04:42.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:04:42.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:42.238 -07 000000586 INF: FPGA: Recv ZSGSRD 29632
17-03-18 00:04:42.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:42.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:42.248 -07 000000618 INF: FPGA: Recv ZSGSRD 29625
17-03-18 00:04:42.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:42.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:42.258 -07 000000458 INF: FPGA: Recv ZSGSRD 29624
17-03-18 00:04:42.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:42.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:42.268 -07 000000586 INF: FPGA: Recv ZSGSRD 29621
17-03-18 00:04:42.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:42.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:42.278 -07 000000547 INF: FPGA: Recv ZSGSRD 29630
17-03-18 00:04:42.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:42.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:42.288 -07 000000424 INF: FPGA: Recv ZSGSRD 29633
17-03-18 00:04:42.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:42.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:42.298 -07 000000586 INF: FPGA: Recv ZSGSRD 29624
17-03-18 00:04:42.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:42.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:42.308 -07 000000547 INF: FPGA: Recv ZSGSRD 29633
17-03-18 00:04:42.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:42.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:42.318 -07 000000547 INF: FPGA: Recv ZSGSRD 29629
17-03-18 00:04:42.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:42.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:42.328 -07 000000586 INF: FPGA: Recv ZSGSRD 29626
17-03-18 00:04:42.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:42.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:42.338 -07 000000586 INF: FPGA: Recv ZPIEZORD 25048
17-03-18 00:04:42.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:42.348 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.355 V. Piezo Error = -10.0 V.
17-03-18 00:04:42.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29628 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29628 (-129.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29621 (-129.8 uncal um), Max = 29633 (-129.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 00:04:42.348 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29628, posNoise = 5, negNoise = 7
17-03-18 00:04:42.348 -07 000000610 INF: Z Motor: After move to -0.130648, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:42.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 00:04:42.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:42.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:42.348 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:42.348 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:42.348 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:04:42.348 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:42.348 -07 000000586 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:04:42.348 -07 000000586 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:04:42.348 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:04:42.348 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:04:42.348 -07 000000586 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:04:42.348 -07 000000586 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:04:42.358 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:04:42.358 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:04:42.358 -07 000000586 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 00:04:42.358 -07 000000586 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:04:42.368 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 00:04:42.368 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 00:04:42.368 -07 000000586 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 00:04:42.368 -07 000000586 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 00:04:42.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28716 150\n [Camera]
17-03-18 00:04:42.568 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:04:43.608 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:04:43.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:04:43.608 -07 000000586 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:43.608 -07 000000586 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:43.608 -07 000000586 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 00:04:43.608 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:04:43.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:04:43.618 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:43.618 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:43.618 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 00:04:43.798 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28716 1422
17-03-18 00:04:43.948 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:04:44.008 -07 000000586 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 00:04:44.008 -07 000000586 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 00:04:44.008 -07 000000586 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:44.018 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 00:04:44.018 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 00:04:44.018 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:44.018 -07 000000586 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:44.018 -07 000000586 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 00:04:44.018 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:44.028 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 00:04:44.448 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:04:44.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:04:44.458 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:44.458 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:44.458 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 00:04:44.458 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:04:44.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:04:44.458 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:44.458 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:44.458 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 00:04:44.648 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:04:44.648 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:04:44.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28716 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-18 00:04:44.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:04:44.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.130659909347229. ------
17-03-18 00:04:44.648 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:44.648 -07 000000586 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13736 mm
17-03-18 00:04:44.648 -07 000000586 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:04:44.658 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:44.658 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:04:44.658 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 00:04:44.658 -07 000000429 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 00:04:44.658 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:04:44.658 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30006, sync = True, waitForSettling = False)
17-03-18 00:04:44.658 -07 000000618 INF: Z Motor: Moving to -0.137359 mm, started at -0.130660 mm, distance = -6.70 um
17-03-18 00:04:44.668 -07 000000618 INF: FPGA: Xmit ZDACW 30006\n [Z Motor]
17-03-18 00:04:44.668 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 00:04:44.678 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:44.678 -07 000000618 INF: FPGA: 'ZDACW 30006' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 00:04:44.678 -07 000000502 INF: FPGA: Recv YRDPOS 132872
17-03-18 00:04:44.688 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 00:04:44.688 -07 000000429 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:44.688 -07 000000429 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:04:44.688 -07 000000429 INF: Y Motor: Moving 1350 steps-28
17-03-18 00:04:44.688 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:44.688 -07 000000561 INF: FPGA: Recv ZDACR 30006
17-03-18 00:04:44.698 -07 000000618 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:04:44.698 -07 000000618 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 00:04:44.698 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:04:44.858 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 00:04:44.858 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 00:04:44.858 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:44.858 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:04:44.858 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 00:04:44.858 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 00:04:44.858 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 00:04:44.858 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:44.868 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:04:44.868 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 00:04:44.868 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 00:04:44.868 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 00:04:45.068 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 00:04:45.068 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 00:04:45.118 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:45.118 -07 000000576 INF: FPGA: Recv YRDPOS 134582
17-03-18 00:04:45.128 -07 000000429 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:45.128 -07 000000429 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:45.128 -07 000000429 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 00:04:45.128 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-18 00:04:46.078 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:46.078 -07 000000576 INF: FPGA: Recv YRDPOS 134583
17-03-18 00:04:46.088 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:46.088 -07 000000429 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:46.118 -07 000000429 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:04:46.118 -07 000000429 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 00:04:46.118 -07 000000429 INF: Y Motor: Moved to 65.7144 after 1458 ms (table move)
17-03-18 00:04:46.118 -07 000000586 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137359 mm (DAC = 30006)
17-03-18 00:04:46.118 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:46.118 -07 000000501 INF: FPGA: Recv ZSGSRD 30678
17-03-18 00:04:46.128 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:04:46.128 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:46.128 -07 000000547 INF: FPGA: Recv ZSGSRD 30668
17-03-18 00:04:46.138 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:46.138 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:46.138 -07 000000476 INF: FPGA: Recv ZSGSRD 30678
17-03-18 00:04:46.148 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:46.148 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:46.148 -07 000000561 INF: FPGA: Recv ZSGSRD 30673
17-03-18 00:04:46.158 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:46.158 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:46.158 -07 000000458 INF: FPGA: Recv ZSGSRD 30689
17-03-18 00:04:46.168 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:46.168 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:46.168 -07 000000501 INF: FPGA: Recv ZSGSRD 30676
17-03-18 00:04:46.178 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:46.178 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:46.178 -07 000000618 INF: FPGA: Recv ZSGSRD 30661
17-03-18 00:04:46.188 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:46.188 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:46.188 -07 000000448 INF: FPGA: Recv ZSGSRD 30670
17-03-18 00:04:46.198 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:46.198 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:46.198 -07 000000576 INF: FPGA: Recv ZSGSRD 30672
17-03-18 00:04:46.208 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:46.208 -07 000000586 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:46.208 -07 000000424 INF: FPGA: Recv ZSGSRD 30672
17-03-18 00:04:46.218 -07 000000586 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:46.218 -07 000000586 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:46.218 -07 000000476 INF: FPGA: Recv ZPIEZORD 26446
17-03-18 00:04:46.228 -07 000000586 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:46.228 -07 000000586 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.579 V. Piezo Error = -9.3 V.
17-03-18 00:04:46.228 -07 000000586 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30674 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30672 (-136.6 uncal um), StdDev = 7 (0.0 uncal um), Range = 28 (0.2 uncal um), Min = 30661 (-136.5 uncal um), Max = 30689 (-136.7 uncal um), Pos Noise = 15 (0.1 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-18 00:04:46.228 -07 000000586 INF: Z Motor: ADC noise = 15, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30674, posNoise = 15, negNoise = 13
17-03-18 00:04:46.228 -07 000000586 INF: Z Motor: After move to -0.137359, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:46.228 -07 000000586 INF: Z Motor: Settle wait time = 1460 ms, measure time = 107 ms (allowed 150 ms), total time = 1567 ms
17-03-18 00:04:46.228 -07 000000586 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 00:04:46.278 -07 000000586 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 00:04:46.278 -07 000000586 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:04:46.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:46.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:46.278 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:46.278 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:04:46.278 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:46.278 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:46.278 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:04:46.278 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:04:46.288 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:04:46.288 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:04:46.298 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 00:04:46.298 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 00:04:46.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:04:46.338 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:04:46.638 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:04:46.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:04:46.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:04:46.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1489901608, 0x0, 559484976) start.
17-03-18 00:04:46.678 -07 000000429 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:04:46.678 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-18 00:04:46.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 00:04:46.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1489901608, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:04:46.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:46.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 00:04:46.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 00:04:46.878 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:46.878 -07 000000476 INF: Autofocus start
17-03-18 00:04:46.878 -07 000000476 INF: MeasureProfile start
17-03-18 00:04:46.878 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:46.888 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:04:46.888 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:04:46.888 -07 000000476 INF: MeasureProfile done
17-03-18 00:04:46.888 -07 000000476 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 00:04:46.888 -07 000000476 INF: Autofocus finished
17-03-18 00:04:47.088 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:04:47.088 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 00:04:47.088 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137379635247511. ----------
17-03-18 00:04:47.088 -07 000000610 INF: Cycle	81	Tile	8	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:04:47.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28501, sync = True, waitForSettling = True)
17-03-18 00:04:47.098 -07 000000610 INF: Z Motor: Moving to -0.130469 mm, started at -0.137380 mm, distance = 6.91 um
17-03-18 00:04:47.098 -07 000000610 INF: FPGA: Xmit ZDACW 28501\n [Z Motor]
17-03-18 00:04:47.098 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 00:04:47.108 -07 000000610 INF: FPGA: 'ZDACW 28501' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:47.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:47.108 -07 000000448 INF: FPGA: Recv ZDACR 28501
17-03-18 00:04:47.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:47.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:04:47.128 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:04:47.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:04:47.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:47.268 -07 000000547 INF: FPGA: Recv ZSGSRD 29605
17-03-18 00:04:47.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:47.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:47.278 -07 000000586 INF: FPGA: Recv ZSGSRD 29597
17-03-18 00:04:47.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:47.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:47.288 -07 000000561 INF: FPGA: Recv ZSGSRD 29599
17-03-18 00:04:47.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:47.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:47.298 -07 000000476 INF: FPGA: Recv ZSGSRD 29597
17-03-18 00:04:47.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:47.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:47.308 -07 000000586 INF: FPGA: Recv ZSGSRD 29602
17-03-18 00:04:47.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:47.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:47.318 -07 000000415 INF: FPGA: Recv ZSGSRD 29599
17-03-18 00:04:47.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:47.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:47.328 -07 000000476 INF: FPGA: Recv ZSGSRD 29598
17-03-18 00:04:47.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:47.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:47.338 -07 000000547 INF: FPGA: Recv ZSGSRD 29607
17-03-18 00:04:47.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:47.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:47.348 -07 000000448 INF: FPGA: Recv ZSGSRD 29598
17-03-18 00:04:47.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:47.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:47.358 -07 000000415 INF: FPGA: Recv ZSGSRD 29599
17-03-18 00:04:47.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:47.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:47.368 -07 000000547 INF: FPGA: Recv ZPIEZORD 24991
17-03-18 00:04:47.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:47.378 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.349 V. Piezo Error = -10.1 V.
17-03-18 00:04:47.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29600 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29599 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29597 (-129.7 uncal um), Max = 29607 (-129.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 00:04:47.378 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29600, posNoise = 7, negNoise = 3
17-03-18 00:04:47.378 -07 000000610 INF: Z Motor: After move to -0.130469, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:47.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 00:04:47.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:47.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:47.378 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:47.378 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:47.378 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:04:47.378 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:04:47.378 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:04:47.378 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:47.378 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:04:47.378 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:04:47.378 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:04:47.378 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:04:47.388 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 00:04:47.388 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:04:47.388 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 00:04:47.388 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:04:47.398 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:04:47.398 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:04:47.398 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:04:47.398 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:04:47.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28678 150\n [Camera]
17-03-18 00:04:47.498 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.000345,
17-03-18 00:04:47.608 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:04:48.638 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:04:48.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:04:48.648 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:48.648 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:48.648 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 00:04:48.648 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:04:48.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:04:48.648 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:48.648 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:48.648 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 00:04:48.838 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28678 1422
17-03-18 00:04:48.988 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:04:49.038 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 00:04:49.038 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 00:04:49.038 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:49.048 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:49.048 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 00:04:49.048 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 00:04:49.048 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 00:04:49.048 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:49.048 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:49.058 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 00:04:49.488 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:04:49.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:04:49.488 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:49.488 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:49.488 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 00:04:49.488 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:04:49.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:04:49.488 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:49.618 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:49.618 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 00:04:49.678 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:04:49.678 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:04:49.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28678 150' command took 2 ms to send, 2264 ms to get response, and 2272 ms overall
17-03-18 00:04:49.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:04:49.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130480031407259. ------
17-03-18 00:04:49.688 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:49.688 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13677 mm
17-03-18 00:04:49.688 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:04:49.688 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 00:04:49.688 -07 000000476 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 00:04:49.698 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:49.898 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 00:04:49.898 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 00:04:49.898 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:49.898 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 00:04:49.898 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 00:04:49.908 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:49.908 -07 000000012 INF: FPGA: Recv YRDPOS 134583
17-03-18 00:04:49.908 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 207 ms to get response, and 223 ms overall
17-03-18 00:04:49.908 -07 000000476 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:49.908 -07 000000476 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:04:49.908 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 218 ms to get response, and 227 ms overall
17-03-18 00:04:49.918 -07 000000476 INF: Y Motor: Moving 1341 steps-18
17-03-18 00:04:49.918 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:04:49.918 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29877, sync = True, waitForSettling = False)
17-03-18 00:04:49.918 -07 000000547 INF: Z Motor: Moving to -0.136768 mm, started at -0.130480 mm, distance = -6.29 um
17-03-18 00:04:49.928 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:04:49.938 -07 000000547 INF: FPGA: Xmit ZDACW 29877\n [Z Motor]
17-03-18 00:04:49.938 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 00:04:49.948 -07 000000547 INF: FPGA: 'ZDACW 29877' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 00:04:49.948 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:49.948 -07 000000502 INF: FPGA: Recv ZDACR 29877
17-03-18 00:04:49.958 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:49.958 -07 000000547 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 00:04:50.018 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 00:04:50.018 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 00:04:50.018 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:50.018 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:50.028 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 534 ms.
17-03-18 00:04:50.128 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:04:50.128 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 00:04:50.288 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 00:04:50.288 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 00:04:50.338 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:50.338 -07 000000429 INF: FPGA: Recv YRDPOS 136272
17-03-18 00:04:50.348 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:04:50.348 -07 000000476 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:50.348 -07 000000476 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 00:04:50.348 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.218 mm/sec
17-03-18 00:04:51.298 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:51.298 -07 000000431 INF: FPGA: Recv YRDPOS 136272
17-03-18 00:04:51.308 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:51.308 -07 000000476 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:51.328 -07 000000476 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:04:51.328 -07 000000476 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:04:51.328 -07 000000476 INF: Y Motor: Moved to 66.5391 after 1643 ms (table move)
17-03-18 00:04:51.338 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136768 mm (DAC = 29877)
17-03-18 00:04:51.338 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:51.338 -07 000000501 INF: FPGA: Recv ZSGSRD 30573
17-03-18 00:04:51.348 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:51.348 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:51.348 -07 000000586 INF: FPGA: Recv ZSGSRD 30578
17-03-18 00:04:51.358 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:51.358 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:51.358 -07 000000618 INF: FPGA: Recv ZSGSRD 30582
17-03-18 00:04:51.368 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:51.368 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:51.368 -07 000000476 INF: FPGA: Recv ZSGSRD 30582
17-03-18 00:04:51.378 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:51.378 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:51.378 -07 000000431 INF: FPGA: Recv ZSGSRD 30578
17-03-18 00:04:51.388 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:51.388 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:51.388 -07 000000458 INF: FPGA: Recv ZSGSRD 30584
17-03-18 00:04:51.398 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:51.398 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:51.398 -07 000000502 INF: FPGA: Recv ZSGSRD 30583
17-03-18 00:04:51.408 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:51.408 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:51.408 -07 000000576 INF: FPGA: Recv ZSGSRD 30580
17-03-18 00:04:51.418 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:51.418 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:51.418 -07 000000012 INF: FPGA: Recv ZSGSRD 30578
17-03-18 00:04:51.428 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:51.428 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:51.428 -07 000000547 INF: FPGA: Recv ZSGSRD 30577
17-03-18 00:04:51.438 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:51.438 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:51.438 -07 000000561 INF: FPGA: Recv ZPIEZORD 26311
17-03-18 00:04:51.448 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:51.448 -07 000000415 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.559 V. Piezo Error = -9.4 V.
17-03-18 00:04:51.448 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30580 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30579 (-136.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30573 (-135.9 uncal um), Max = 30584 (-136.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 00:04:51.448 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30580, posNoise = 4, negNoise = 7
17-03-18 00:04:51.448 -07 000000415 INF: Z Motor: After move to -0.136768, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:51.448 -07 000000415 INF: Z Motor: Settle wait time = 1419 ms, measure time = 109 ms (allowed 150 ms), total time = 1528 ms
17-03-18 00:04:51.448 -07 000000415 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 00:04:51.498 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1809 ms
17-03-18 00:04:51.498 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:04:51.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:51.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:51.498 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:51.498 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:51.498 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:04:51.498 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:51.508 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:04:51.508 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:04:51.508 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 00:04:51.508 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:04:51.518 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 00:04:51.518 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 00:04:51.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:04:51.568 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:04:51.868 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:04:51.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:04:51.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:04:51.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 00:04:51.908 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:04:51.908 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-18 00:04:51.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 385 ms overall
17-03-18 00:04:51.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 00:04:51.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:51.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:04:51.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:04:52.108 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:52.108 -07 000000476 INF: Autofocus start
17-03-18 00:04:52.108 -07 000000476 INF: MeasureProfile start
17-03-18 00:04:52.108 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:52.118 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:04:52.118 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:04:52.118 -07 000000476 INF: MeasureProfile done
17-03-18 00:04:52.118 -07 000000476 INF: X=16  Z correction [um]=0.0530179
17-03-18 00:04:52.118 -07 000000476 INF: Autofocus finished
17-03-18 00:04:52.128 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:04:52.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:04:52.318 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:04:52.318 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:04:52.318 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.136775759306185. ----------
17-03-18 00:04:52.318 -07 000000610 INF: Cycle	81	Tile	9	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:04:52.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28402, sync = True, waitForSettling = True)
17-03-18 00:04:52.328 -07 000000610 INF: Z Motor: Moving to -0.130016 mm, started at -0.136776 mm, distance = 6.76 um
17-03-18 00:04:52.328 -07 000000610 INF: FPGA: Xmit ZDACW 28402\n [Z Motor]
17-03-18 00:04:52.328 -07 000000586 INF: FPGA: Recv ZDACW
17-03-18 00:04:52.338 -07 000000610 INF: FPGA: 'ZDACW 28402' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:04:52.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:52.338 -07 000000476 INF: FPGA: Recv ZDACR 28402
17-03-18 00:04:52.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:52.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:04:52.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:52.498 -07 000000547 INF: FPGA: Recv ZSGSRD 29531
17-03-18 00:04:52.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:52.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:52.508 -07 000000458 INF: FPGA: Recv ZSGSRD 29528
17-03-18 00:04:52.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:52.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:52.518 -07 000000618 INF: FPGA: Recv ZSGSRD 29529
17-03-18 00:04:52.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:52.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:52.548 -07 000000501 INF: FPGA: Recv ZSGSRD 29532
17-03-18 00:04:52.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:04:52.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:52.568 -07 000000586 INF: FPGA: Recv ZSGSRD 29533
17-03-18 00:04:52.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:04:52.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:52.578 -07 000000576 INF: FPGA: Recv ZSGSRD 29531
17-03-18 00:04:52.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:52.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:52.598 -07 000000429 INF: FPGA: Recv ZSGSRD 29526
17-03-18 00:04:52.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:04:52.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:52.608 -07 000000458 INF: FPGA: Recv ZSGSRD 29526
17-03-18 00:04:52.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:52.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:52.628 -07 000000586 INF: FPGA: Recv ZSGSRD 29530
17-03-18 00:04:52.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:04:52.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:52.638 -07 000000415 INF: FPGA: Recv ZSGSRD 29529
17-03-18 00:04:52.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:52.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:52.658 -07 000000547 INF: FPGA: Recv ZPIEZORD 24932
17-03-18 00:04:52.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:04:52.668 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -10.1 V.
17-03-18 00:04:52.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29530 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29530 (-129.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29526 (-129.2 uncal um), Max = 29533 (-129.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 00:04:52.668 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29530, posNoise = 3, negNoise = 4
17-03-18 00:04:52.668 -07 000000610 INF: Z Motor: After move to -0.130016, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:52.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 341 ms)
17-03-18 00:04:52.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:52.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:52.668 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:52.668 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:04:52.668 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:52.668 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:04:52.668 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:04:52.668 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:52.668 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:04:52.668 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:04:52.668 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:04:52.668 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:04:52.678 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 00:04:52.678 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:04:52.678 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:04:52.678 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:04:52.688 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 00:04:52.688 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 00:04:52.688 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 00:04:52.688 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 00:04:52.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28578 150\n [Camera]
17-03-18 00:04:52.858 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.015368,
17-03-18 00:04:52.888 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:04:53.928 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:04:53.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:04:53.928 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:53.928 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:04:53.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:04:53.938 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:53.938 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:53.938 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 00:04:53.938 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:53.938 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 00:04:54.118 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28578 1422
17-03-18 00:04:54.268 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:04:54.308 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 00:04:54.308 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 00:04:54.308 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:54.308 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 00:04:54.318 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 00:04:54.318 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:54.318 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:04:54.318 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:04:54.318 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 00:04:54.328 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 00:04:54.768 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:04:54.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:04:54.768 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:54.778 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:04:54.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:04:54.778 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:54.898 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:54.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 00:04:54.898 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:54.898 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 00:04:54.968 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 2268
17-03-18 00:04:54.968 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:04:54.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28578 150' command took 2 ms to send, 2263 ms to get response, and 2275 ms overall
17-03-18 00:04:54.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:04:54.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130030336557336. ------
17-03-18 00:04:54.968 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:54.968 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13670 mm
17-03-18 00:04:54.968 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:04:55.298 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 00:04:55.298 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 00:04:55.298 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:55.298 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 00:04:55.298 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 00:04:55.298 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:55.298 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:04:55.298 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 00:04:55.298 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:55.308 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-18 00:04:55.318 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 00:04:55.318 -07 000000012 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 00:04:55.318 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:55.318 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:55.318 -07 000000448 INF: FPGA: Recv YRDPOS 136273
17-03-18 00:04:55.318 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 345 ms to get response, and 347 ms overall
17-03-18 00:04:55.318 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29862, sync = True, waitForSettling = False)
17-03-18 00:04:55.318 -07 000000448 INF: Z Motor: Moving to -0.136699 mm, started at -0.130030 mm, distance = -6.67 um
17-03-18 00:04:55.328 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:55.328 -07 000000012 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:55.328 -07 000000448 INF: FPGA: Xmit ZDACW 29862\n [Z Motor]
17-03-18 00:04:55.328 -07 000000012 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:04:55.328 -07 000000012 INF: Y Motor: Moving 1349 steps-28
17-03-18 00:04:55.338 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:04:55.348 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:04:56.058 -07 000000586 INF: FPGA: Recv ZDACW
17-03-18 00:04:56.058 -07 000000586 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:04:56.058 -07 000000586 INF: FPGA: Recv YMVTILE
17-03-18 00:04:56.058 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 700 ms to get response, and 724 ms overall
17-03-18 00:04:56.058 -07 000000448 INF: FPGA: 'ZDACW 29862' command took 0 ms to send, 720 ms to get response, and 731 ms overall
17-03-18 00:04:56.058 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:56.058 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 710 ms to get response, and 734 ms overall
17-03-18 00:04:56.058 -07 000000547 INF: FPGA: Recv ZDACR 29862
17-03-18 00:04:56.068 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:56.068 -07 000000448 INF: Z Motor: MoveAbsStepped took 742 ms (did NOT wait for settling yet))
17-03-18 00:04:56.118 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:56.118 -07 000000586 INF: FPGA: Recv YRDPOS 137978
17-03-18 00:04:56.128 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:56.128 -07 000000012 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:56.128 -07 000000012 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 00:04:56.128 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 724 ms, distance = 0.844 mm, average velocity = 1.165 mm/sec
17-03-18 00:04:57.078 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:04:57.078 -07 000000448 INF: FPGA: Recv YRDPOS 137978
17-03-18 00:04:57.088 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:57.088 -07 000000012 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:04:57.108 -07 000000012 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:04:57.108 -07 000000012 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:04:57.108 -07 000000012 INF: Y Motor: Moved to 67.3721 after 1795 ms (table move)
17-03-18 00:04:57.118 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136699 mm (DAC = 29862)
17-03-18 00:04:57.118 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:57.118 -07 000000586 INF: FPGA: Recv ZSGSRD 30569
17-03-18 00:04:57.128 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:57.128 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:57.128 -07 000000448 INF: FPGA: Recv ZSGSRD 30569
17-03-18 00:04:57.128 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:04:57.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:04:57.138 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:57.138 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:57.138 -07 000000547 INF: FPGA: Recv ZSGSRD 30563
17-03-18 00:04:57.148 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:57.148 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:57.148 -07 000000586 INF: FPGA: Recv ZSGSRD 30570
17-03-18 00:04:57.158 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:57.158 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:57.158 -07 000000012 INF: FPGA: Recv ZSGSRD 30569
17-03-18 00:04:57.168 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:57.168 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:57.168 -07 000000586 INF: FPGA: Recv ZSGSRD 30566
17-03-18 00:04:57.178 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:57.178 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:57.178 -07 000000547 INF: FPGA: Recv ZSGSRD 30573
17-03-18 00:04:57.188 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:57.188 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:57.188 -07 000000012 INF: FPGA: Recv ZSGSRD 30571
17-03-18 00:04:57.198 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:57.198 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:57.198 -07 000000547 INF: FPGA: Recv ZSGSRD 30571
17-03-18 00:04:57.208 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:57.208 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:57.208 -07 000000586 INF: FPGA: Recv ZSGSRD 30565
17-03-18 00:04:57.218 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:57.218 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:57.218 -07 000000012 INF: FPGA: Recv ZPIEZORD 26300
17-03-18 00:04:57.228 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:57.228 -07 000000502 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.557 V. Piezo Error = -9.4 V.
17-03-18 00:04:57.228 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30569 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30569 (-135.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30563 (-135.9 uncal um), Max = 30573 (-135.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:04:57.228 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30569, posNoise = 4, negNoise = 6
17-03-18 00:04:57.228 -07 000000502 INF: Z Motor: After move to -0.136699, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:57.228 -07 000000502 INF: Z Motor: Settle wait time = 1791 ms, measure time = 111 ms (allowed 150 ms), total time = 1902 ms
17-03-18 00:04:57.228 -07 000000502 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 00:04:57.268 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2291 ms
17-03-18 00:04:57.268 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:04:57.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:57.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:57.268 -07 000000586 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:57.268 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:57.268 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:04:57.268 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:57.268 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:04:57.268 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:04:57.278 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:04:57.278 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:04:57.288 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 00:04:57.288 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 00:04:57.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:04:57.338 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:04:57.638 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:04:57.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:04:57.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:04:57.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) start.
17-03-18 00:04:57.678 -07 000000429 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:04:57.678 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 00:04:57.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 00:04:57.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 00:04:57.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:57.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:04:57.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 00:04:57.778 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:04:57.778 -07 000000448 INF: Autofocus start
17-03-18 00:04:57.778 -07 000000448 INF: MeasureProfile start
17-03-18 00:04:57.778 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:04:57.788 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:04:57.788 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:04:57.788 -07 000000448 INF: MeasureProfile done
17-03-18 00:04:57.788 -07 000000448 INF: X=16  Z correction [um]=0.0530179
17-03-18 00:04:57.788 -07 000000448 INF: Autofocus finished
17-03-18 00:04:57.988 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:04:57.988 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 206 ms overall
17-03-18 00:04:57.998 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.136705092972626. ----------
17-03-18 00:04:57.998 -07 000000610 INF: Cycle	81	Tile	10	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:04:57.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28386, sync = True, waitForSettling = True)
17-03-18 00:04:57.998 -07 000000610 INF: Z Motor: Moving to -0.129943 mm, started at -0.136705 mm, distance = 6.76 um
17-03-18 00:04:58.018 -07 000000610 INF: FPGA: Xmit ZDACW 28386\n [Z Motor]
17-03-18 00:04:58.018 -07 000000448 INF: FPGA: Recv ZDACW
17-03-18 00:04:58.028 -07 000000610 INF: FPGA: 'ZDACW 28386' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 00:04:58.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:04:58.028 -07 000000618 INF: FPGA: Recv ZDACR 28386
17-03-18 00:04:58.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:58.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:04:58.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:58.188 -07 000000429 INF: FPGA: Recv ZSGSRD 29517
17-03-18 00:04:58.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:04:58.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:58.198 -07 000000618 INF: FPGA: Recv ZSGSRD 29522
17-03-18 00:04:58.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:58.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:58.208 -07 000000547 INF: FPGA: Recv ZSGSRD 29516
17-03-18 00:04:58.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:58.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:58.218 -07 000000012 INF: FPGA: Recv ZSGSRD 29513
17-03-18 00:04:58.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:58.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:58.228 -07 000000547 INF: FPGA: Recv ZSGSRD 29520
17-03-18 00:04:58.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:58.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:58.238 -07 000000429 INF: FPGA: Recv ZSGSRD 29517
17-03-18 00:04:58.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:58.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:58.248 -07 000000547 INF: FPGA: Recv ZSGSRD 29521
17-03-18 00:04:58.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:58.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:58.258 -07 000000429 INF: FPGA: Recv ZSGSRD 29516
17-03-18 00:04:58.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:58.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:58.268 -07 000000448 INF: FPGA: Recv ZSGSRD 29520
17-03-18 00:04:58.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:04:58.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:04:58.288 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.030322,
17-03-18 00:04:58.288 -07 000000586 INF: FPGA: Recv ZSGSRD 29513
17-03-18 00:04:58.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:04:58.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:04:58.318 -07 000000502 INF: FPGA: Recv ZPIEZORD 24915
17-03-18 00:04:58.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:04:58.328 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -10.1 V.
17-03-18 00:04:58.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29518 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29517 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29513 (-129.1 uncal um), Max = 29522 (-129.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 00:04:58.328 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29518, posNoise = 4, negNoise = 5
17-03-18 00:04:58.328 -07 000000610 INF: Z Motor: After move to -0.129943, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:04:58.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-18 00:04:58.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:04:58.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:04:58.328 -07 000000586 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:04:58.328 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:04:58.328 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:04:58.328 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:04:58.328 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:04:58.328 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:04:58.328 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:04:58.328 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:04:58.328 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:04:58.328 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:04:58.338 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:04:58.338 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:04:58.338 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:04:58.338 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:04:58.348 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 00:04:58.348 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:04:58.348 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 00:04:58.348 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:04:58.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28563 150\n [Camera]
17-03-18 00:04:58.548 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:04:59.588 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1232
17-03-18 00:04:59.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1232
17-03-18 00:04:59.598 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:04:59.598 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1232
17-03-18 00:04:59.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1232
17-03-18 00:04:59.598 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:04:59.598 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:04:59.598 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 00:04:59.598 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:04:59.598 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 00:04:59.788 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28563 1422
17-03-18 00:04:59.928 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:04:59.988 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 00:04:59.988 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 00:04:59.988 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:59.998 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:04:59.998 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 00:04:59.998 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 00:04:59.998 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 00:04:59.998 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:04:59.998 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:00.008 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 00:05:00.438 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:05:00.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:05:00.438 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:00.438 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:05:00.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:05:00.438 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:00.438 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:00.438 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 00:05:00.448 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:00.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 00:05:00.628 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:05:00.628 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:05:00.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28563 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-18 00:05:00.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:05:00.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.129953246011635. ------
17-03-18 00:05:00.628 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13643 mm
17-03-18 00:05:00.628 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:05:00.628 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:00.638 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29803, sync = True, waitForSettling = False)
17-03-18 00:05:00.638 -07 000000502 INF: Z Motor: Moving to -0.136429 mm, started at -0.129953 mm, distance = -6.48 um
17-03-18 00:05:00.638 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 00:05:00.638 -07 000000012 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 00:05:00.638 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:00.648 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:00.648 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:00.658 -07 000000502 INF: FPGA: Xmit ZDACW 29803\n [Z Motor]
17-03-18 00:05:00.668 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:05:00.838 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 00:05:00.848 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 00:05:00.848 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:00.848 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 00:05:00.848 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 00:05:00.848 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:00.848 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:00.848 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:00.848 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 00:05:00.858 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 00:05:00.868 -07 000000586 INF: FPGA: Recv YRDPOS 137978
17-03-18 00:05:00.868 -07 000000586 INF: FPGA: Recv ZDACW
17-03-18 00:05:00.868 -07 000000502 INF: FPGA: 'ZDACW 29803' command took 0 ms to send, 201 ms to get response, and 228 ms overall
17-03-18 00:05:00.868 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:00.868 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 211 ms to get response, and 228 ms overall
17-03-18 00:05:00.868 -07 000000012 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:00.868 -07 000000012 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:05:00.868 -07 000000012 INF: Y Motor: Moving 1345 steps-22
17-03-18 00:05:00.868 -07 000000586 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:05:00.868 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 00:05:00.868 -07 000000586 INF: FPGA: Recv ZDACR 29803
17-03-18 00:05:00.878 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:05:00.878 -07 000000502 INF: Z Motor: MoveAbsStepped took 237 ms (did NOT wait for settling yet))
17-03-18 00:05:00.878 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:05:01.248 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 00:05:01.248 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 00:05:01.298 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:01.298 -07 000000586 INF: FPGA: Recv YRDPOS 139684
17-03-18 00:05:01.308 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:05:01.308 -07 000000012 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:01.308 -07 000000012 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 00:05:01.308 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.841 mm, average velocity = 2.178 mm/sec
17-03-18 00:05:02.128 -07 000000586 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:05:02.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:05:02.258 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:02.258 -07 000000586 INF: FPGA: Recv YRDPOS 139684
17-03-18 00:05:02.268 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:02.268 -07 000000012 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:02.288 -07 000000012 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:05:02.288 -07 000000012 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:05:02.288 -07 000000012 INF: Y Motor: Moved to 68.2051 after 1653 ms (table move)
17-03-18 00:05:02.298 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136429 mm (DAC = 29803)
17-03-18 00:05:02.298 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:02.298 -07 000000012 INF: FPGA: Recv ZSGSRD 30531
17-03-18 00:05:02.308 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:02.308 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:02.308 -07 000000576 INF: FPGA: Recv ZSGSRD 30529
17-03-18 00:05:02.318 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:02.318 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:02.318 -07 000000586 INF: FPGA: Recv ZSGSRD 30530
17-03-18 00:05:02.328 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:02.328 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:02.328 -07 000000576 INF: FPGA: Recv ZSGSRD 30529
17-03-18 00:05:02.338 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:02.338 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:02.338 -07 000000502 INF: FPGA: Recv ZSGSRD 30525
17-03-18 00:05:02.348 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:02.348 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:02.348 -07 000000502 INF: FPGA: Recv ZSGSRD 30521
17-03-18 00:05:02.358 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:02.358 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:02.358 -07 000000576 INF: FPGA: Recv ZSGSRD 30523
17-03-18 00:05:02.368 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:02.368 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:02.368 -07 000000576 INF: FPGA: Recv ZSGSRD 30526
17-03-18 00:05:02.378 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:02.378 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:02.378 -07 000000502 INF: FPGA: Recv ZSGSRD 30522
17-03-18 00:05:02.388 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:02.388 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:02.388 -07 000000012 INF: FPGA: Recv ZSGSRD 30524
17-03-18 00:05:02.398 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:02.398 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:02.398 -07 000000586 INF: FPGA: Recv ZPIEZORD 26255
17-03-18 00:05:02.408 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:02.408 -07 000000618 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.548 V. Piezo Error = -9.4 V.
17-03-18 00:05:02.408 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30526 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30526 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30521 (-135.6 uncal um), Max = 30531 (-135.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 00:05:02.408 -07 000000618 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30526, posNoise = 5, negNoise = 5
17-03-18 00:05:02.408 -07 000000618 INF: Z Motor: After move to -0.136429, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:02.408 -07 000000618 INF: Z Motor: Settle wait time = 1657 ms, measure time = 112 ms (allowed 150 ms), total time = 1769 ms
17-03-18 00:05:02.408 -07 000000618 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 00:05:02.448 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1810 ms
17-03-18 00:05:02.448 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:05:02.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:02.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:02.448 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:02.448 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:02.448 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:05:02.448 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:02.448 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:05:02.448 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:05:02.458 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:05:02.458 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:05:02.468 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 00:05:02.468 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 00:05:02.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:05:02.518 -07 000000586 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:05:02.818 -07 000000586 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:05:02.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:05:02.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:05:02.918 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:05:02.918 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 00:05:02.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 448 ms to get response, and 450 ms overall
17-03-18 00:05:02.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 00:05:03.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:05:03.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:03.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:05:03.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 233 ms.
17-03-18 00:05:03.118 -07 000000586 INF: Autofocus start
17-03-18 00:05:03.118 -07 000000586 INF: MeasureProfile start
17-03-18 00:05:03.118 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:03.118 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:03.128 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:05:03.128 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:05:03.128 -07 000000586 INF: MeasureProfile done
17-03-18 00:05:03.128 -07 000000586 INF: X=0  Z correction [um]=-0.02394831
17-03-18 00:05:03.128 -07 000000586 INF: Autofocus finished
17-03-18 00:05:03.328 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:05:03.328 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 00:05:03.328 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.13642885185053. ----------
17-03-18 00:05:03.338 -07 000000610 INF: Cycle	81	Tile	11	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:05:03.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28310, sync = True, waitForSettling = True)
17-03-18 00:05:03.338 -07 000000610 INF: Z Motor: Moving to -0.129595 mm, started at -0.136429 mm, distance = 6.83 um
17-03-18 00:05:03.358 -07 000000610 INF: FPGA: Xmit ZDACW 28310\n [Z Motor]
17-03-18 00:05:03.358 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 00:05:03.368 -07 000000610 INF: FPGA: 'ZDACW 28310' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 00:05:03.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:03.378 -07 000000431 INF: FPGA: Recv ZDACR 28310
17-03-18 00:05:03.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:05:03.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:05:03.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:03.538 -07 000000431 INF: FPGA: Recv ZSGSRD 29459
17-03-18 00:05:03.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:03.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:03.548 -07 000000561 INF: FPGA: Recv ZSGSRD 29464
17-03-18 00:05:03.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:03.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:03.558 -07 000000586 INF: FPGA: Recv ZSGSRD 29462
17-03-18 00:05:03.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:03.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:03.568 -07 000000561 INF: FPGA: Recv ZSGSRD 29463
17-03-18 00:05:03.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:03.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:03.578 -07 000000618 INF: FPGA: Recv ZSGSRD 29467
17-03-18 00:05:03.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:03.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:03.588 -07 000000502 INF: FPGA: Recv ZSGSRD 29461
17-03-18 00:05:03.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:03.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:03.598 -07 000000586 INF: FPGA: Recv ZSGSRD 29469
17-03-18 00:05:03.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:03.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:03.608 -07 000000576 INF: FPGA: Recv ZSGSRD 29461
17-03-18 00:05:03.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:03.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:03.618 -07 000000424 INF: FPGA: Recv ZSGSRD 29461
17-03-18 00:05:03.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:03.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:03.628 -07 000000012 INF: FPGA: Recv ZSGSRD 29463
17-03-18 00:05:03.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:03.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:03.638 -07 000000431 INF: FPGA: Recv ZPIEZORD 24819
17-03-18 00:05:03.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:03.648 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -10.2 V.
17-03-18 00:05:03.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29463 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29462 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29459 (-128.8 uncal um), Max = 29469 (-128.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 00:05:03.648 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29463, posNoise = 6, negNoise = 4
17-03-18 00:05:03.648 -07 000000610 INF: Z Motor: After move to -0.129595, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:03.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 309 ms)
17-03-18 00:05:03.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:03.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:03.648 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:03.648 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:03.648 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:05:03.648 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:05:03.648 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:05:03.648 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:03.648 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:05:03.648 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:05:03.648 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:05:03.648 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:05:03.658 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:05:03.658 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:05:03.658 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:05:03.658 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:05:03.668 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.038479,
17-03-18 00:05:03.668 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 00:05:03.668 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 00:05:03.668 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 00:05:03.668 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 00:05:03.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28487 150\n [Camera]
17-03-18 00:05:03.878 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:05:04.908 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:05:04.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:05:04.908 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:04.918 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:05:04.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:05:04.918 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:04.918 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:04.918 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-18 00:05:04.918 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:04.918 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 00:05:05.108 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28487 1422
17-03-18 00:05:05.258 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:05:05.318 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 00:05:05.318 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 00:05:05.318 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:05.318 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 00:05:05.318 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 00:05:05.318 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:05.318 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:05.318 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 00:05:05.318 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:05.328 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 00:05:05.758 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:05:05.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:05:05.758 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:05.758 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:05:05.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:05:05.758 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:05.868 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:05.868 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 00:05:05.868 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:05.868 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 00:05:05.948 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:05:05.948 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:05:05.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28487 150' command took 2 ms to send, 2262 ms to get response, and 2274 ms overall
17-03-18 00:05:05.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:05:05.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.129599914343838. ------
17-03-18 00:05:05.948 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:05.948 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13634 mm
17-03-18 00:05:05.948 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:05:05.958 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29783, sync = True, waitForSettling = False)
17-03-18 00:05:05.958 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:05.958 -07 000000618 INF: Z Motor: Moving to -0.136338 mm, started at -0.129600 mm, distance = -6.74 um
17-03-18 00:05:05.958 -07 000000618 INF: FPGA: Xmit ZDACW 29783\n [Z Motor]
17-03-18 00:05:05.958 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 00:05:05.958 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 00:05:05.958 -07 000000431 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 00:05:05.958 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 00:05:05.968 -07 000000618 INF: FPGA: 'ZDACW 29783' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:05.968 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:05:05.978 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:05.978 -07 000000576 INF: FPGA: Recv YRDPOS 139685
17-03-18 00:05:05.988 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:05.988 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 00:05:05.988 -07 000000431 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:05.988 -07 000000012 INF: FPGA: Recv ZDACR 29783
17-03-18 00:05:05.988 -07 000000431 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:05:05.988 -07 000000431 INF: Y Motor: Moving 1339 steps-15
17-03-18 00:05:05.998 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:05:05.998 -07 000000618 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 00:05:05.998 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:05:06.168 -07 000000586 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:05:06.168 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 213 ms overall
17-03-18 00:05:06.248 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 00:05:06.248 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 00:05:06.248 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:06.248 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:06.258 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-18 00:05:06.258 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 00:05:06.258 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 00:05:06.258 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:06.258 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:06.258 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-18 00:05:06.368 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 00:05:06.368 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 00:05:06.418 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:06.418 -07 000000502 INF: FPGA: Recv YRDPOS 141368
17-03-18 00:05:06.428 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:05:06.428 -07 000000431 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:06.428 -07 000000431 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 00:05:06.428 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.838 mm, average velocity = 2.187 mm/sec
17-03-18 00:05:07.128 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:05:07.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:05:07.378 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:07.378 -07 000000626 INF: FPGA: Recv YRDPOS 141368
17-03-18 00:05:07.388 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:07.388 -07 000000431 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:07.408 -07 000000431 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:05:07.408 -07 000000431 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:05:07.408 -07 000000431 INF: Y Motor: Moved to 69.0273 after 1456 ms (table move)
17-03-18 00:05:07.418 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136338 mm (DAC = 29783)
17-03-18 00:05:07.418 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:07.418 -07 000000415 INF: FPGA: Recv ZSGSRD 30514
17-03-18 00:05:07.428 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:05:07.428 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:07.428 -07 000000501 INF: FPGA: Recv ZSGSRD 30512
17-03-18 00:05:07.438 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:07.438 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:07.438 -07 000000415 INF: FPGA: Recv ZSGSRD 30511
17-03-18 00:05:07.448 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:07.448 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:07.448 -07 000000501 INF: FPGA: Recv ZSGSRD 30519
17-03-18 00:05:07.458 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:07.458 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:07.458 -07 000000618 INF: FPGA: Recv ZSGSRD 30511
17-03-18 00:05:07.468 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:07.468 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:07.468 -07 000000501 INF: FPGA: Recv ZSGSRD 30506
17-03-18 00:05:07.478 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:07.478 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:07.478 -07 000000415 INF: FPGA: Recv ZSGSRD 30509
17-03-18 00:05:07.488 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:07.488 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:07.488 -07 000000618 INF: FPGA: Recv ZSGSRD 30508
17-03-18 00:05:07.498 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:07.498 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:07.498 -07 000000424 INF: FPGA: Recv ZSGSRD 30517
17-03-18 00:05:07.508 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:07.508 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:07.508 -07 000000415 INF: FPGA: Recv ZSGSRD 30513
17-03-18 00:05:07.518 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:07.518 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:07.518 -07 000000424 INF: FPGA: Recv ZPIEZORD 26283
17-03-18 00:05:07.528 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:07.528 -07 000000458 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.545 V. Piezo Error = -9.3 V.
17-03-18 00:05:07.528 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30512 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30512 (-135.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30506 (-135.5 uncal um), Max = 30519 (-135.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:05:07.528 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30512, posNoise = 7, negNoise = 6
17-03-18 00:05:07.528 -07 000000458 INF: Z Motor: After move to -0.136338, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:07.528 -07 000000458 INF: Z Motor: Settle wait time = 1462 ms, measure time = 108 ms (allowed 150 ms), total time = 1570 ms
17-03-18 00:05:07.528 -07 000000458 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 00:05:07.578 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 00:05:07.578 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:05:07.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:07.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:07.578 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:07.578 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:07.578 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:05:07.578 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:07.588 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:05:07.588 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:05:07.588 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:05:07.588 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:05:07.598 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 00:05:07.598 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 00:05:07.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:05:07.638 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:05:07.938 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:05:07.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:05:07.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:05:07.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 00:05:07.978 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:05:07.978 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 00:05:07.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 00:05:08.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:05:08.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:08.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:05:08.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:05:08.178 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:08.178 -07 000000501 INF: Autofocus start
17-03-18 00:05:08.178 -07 000000501 INF: MeasureProfile start
17-03-18 00:05:08.178 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:08.188 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:05:08.188 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:05:08.188 -07 000000501 INF: MeasureProfile done
17-03-18 00:05:08.188 -07 000000501 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 00:05:08.188 -07 000000501 INF: Autofocus finished
17-03-18 00:05:08.388 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:05:08.388 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:05:08.388 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136338912880545. ----------
17-03-18 00:05:08.388 -07 000000610 INF: Cycle	81	Tile	12	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:05:08.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28261, sync = True, waitForSettling = True)
17-03-18 00:05:08.398 -07 000000610 INF: Z Motor: Moving to -0.129371 mm, started at -0.136339 mm, distance = 6.97 um
17-03-18 00:05:08.398 -07 000000610 INF: FPGA: Xmit ZDACW 28261\n [Z Motor]
17-03-18 00:05:08.398 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 00:05:08.408 -07 000000610 INF: FPGA: 'ZDACW 28261' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:05:08.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:08.418 -07 000000501 INF: FPGA: Recv ZDACR 28261
17-03-18 00:05:08.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:05:08.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:05:08.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:08.578 -07 000000458 INF: FPGA: Recv ZSGSRD 29426
17-03-18 00:05:08.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:08.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:08.588 -07 000000618 INF: FPGA: Recv ZSGSRD 29433
17-03-18 00:05:08.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:08.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:08.598 -07 000000618 INF: FPGA: Recv ZSGSRD 29426
17-03-18 00:05:08.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:08.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:08.608 -07 000000415 INF: FPGA: Recv ZSGSRD 29427
17-03-18 00:05:08.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:08.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:08.618 -07 000000458 INF: FPGA: Recv ZSGSRD 29432
17-03-18 00:05:08.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:08.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:08.628 -07 000000458 INF: FPGA: Recv ZSGSRD 29425
17-03-18 00:05:08.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:08.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:08.638 -07 000000424 INF: FPGA: Recv ZSGSRD 29433
17-03-18 00:05:08.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:08.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:08.648 -07 000000424 INF: FPGA: Recv ZSGSRD 29427
17-03-18 00:05:08.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:08.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:08.658 -07 000000458 INF: FPGA: Recv ZSGSRD 29430
17-03-18 00:05:08.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:08.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:08.668 -07 000000501 INF: FPGA: Recv ZSGSRD 29422
17-03-18 00:05:08.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:08.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:08.678 -07 000000618 INF: FPGA: Recv ZPIEZORD 24813
17-03-18 00:05:08.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:08.688 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.312 V. Piezo Error = -10.1 V.
17-03-18 00:05:08.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29428 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29427 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29422 (-128.6 uncal um), Max = 29433 (-128.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:05:08.688 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29428, posNoise = 5, negNoise = 6
17-03-18 00:05:08.688 -07 000000610 INF: Z Motor: After move to -0.129371, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:08.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 00:05:08.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:08.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:08.688 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:08.688 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:08.688 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:05:08.688 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:05:08.688 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:05:08.688 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:08.688 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:05:08.688 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:05:08.688 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:05:08.688 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:05:08.698 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:05:08.698 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:05:08.698 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 00:05:08.698 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:05:08.708 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 00:05:08.708 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:05:08.708 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 00:05:08.708 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:05:08.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28438 150\n [Camera]
17-03-18 00:05:08.928 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:05:09.058 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.037119,
17-03-18 00:05:09.958 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:05:09.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:05:09.958 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:09.968 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:05:09.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:05:09.968 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:09.968 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:09.968 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 00:05:09.968 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:09.968 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 00:05:10.158 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28438 1422
17-03-18 00:05:10.298 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:05:10.368 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 00:05:10.368 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 00:05:10.368 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:10.368 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:10.368 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 00:05:10.368 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 00:05:10.368 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 00:05:10.368 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:10.368 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:10.378 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 00:05:10.808 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:05:10.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:05:10.808 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:10.808 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:05:10.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:05:10.808 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:10.808 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:10.808 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 00:05:10.818 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:10.818 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 00:05:10.998 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:05:10.998 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:05:10.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28438 150' command took 2 ms to send, 2262 ms to get response, and 2281 ms overall
17-03-18 00:05:10.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:05:10.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129375066918876. ------
17-03-18 00:05:10.998 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:10.998 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13566 mm
17-03-18 00:05:10.998 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:05:11.008 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:11.008 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 00:05:11.008 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:05:11.008 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 00:05:11.008 -07 000000424 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 00:05:11.008 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29635, sync = True, waitForSettling = False)
17-03-18 00:05:11.008 -07 000000576 INF: Z Motor: Moving to -0.135660 mm, started at -0.129375 mm, distance = -6.29 um
17-03-18 00:05:11.018 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:11.018 -07 000000012 INF: FPGA: Recv YRDPOS 141368
17-03-18 00:05:11.028 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 00:05:11.028 -07 000000424 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:11.028 -07 000000424 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:05:11.028 -07 000000424 INF: Y Motor: Moving 1352 steps-31
17-03-18 00:05:11.028 -07 000000576 INF: FPGA: Xmit ZDACW 29635\n [Z Motor]
17-03-18 00:05:11.028 -07 000000482 INF: FPGA: Recv ZDACW
17-03-18 00:05:11.038 -07 000000576 INF: FPGA: 'ZDACW 29635' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 00:05:11.038 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:05:11.048 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:11.048 -07 000000476 INF: FPGA: Recv ZDACR 29635
17-03-18 00:05:11.058 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:05:11.058 -07 000000576 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 00:05:11.208 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:05:11.208 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 00:05:11.218 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 00:05:11.228 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 00:05:11.238 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 422 ms.
17-03-18 00:05:11.238 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:11.238 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 00:05:11.238 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:11.238 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:11.238 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 00:05:11.238 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 435 ms.
17-03-18 00:05:11.248 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 439 ms.
17-03-18 00:05:11.408 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 00:05:11.408 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 00:05:11.458 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:11.458 -07 000000429 INF: FPGA: Recv YRDPOS 143080
17-03-18 00:05:11.468 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:05:11.468 -07 000000424 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:11.468 -07 000000424 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 00:05:11.468 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.184 mm/sec
17-03-18 00:05:12.128 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:05:12.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:05:12.418 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:12.418 -07 000000576 INF: FPGA: Recv YRDPOS 143080
17-03-18 00:05:12.428 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:12.428 -07 000000424 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:12.448 -07 000000424 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:05:12.448 -07 000000424 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:05:12.448 -07 000000424 INF: Y Motor: Moved to 69.8633 after 1445 ms (table move)
17-03-18 00:05:12.458 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135660 mm (DAC = 29635)
17-03-18 00:05:12.458 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:12.458 -07 000000476 INF: FPGA: Recv ZSGSRD 30408
17-03-18 00:05:12.468 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:05:12.468 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:12.468 -07 000000012 INF: FPGA: Recv ZSGSRD 30409
17-03-18 00:05:12.478 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:12.478 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:12.478 -07 000000502 INF: FPGA: Recv ZSGSRD 30409
17-03-18 00:05:12.488 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:12.488 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:12.488 -07 000000576 INF: FPGA: Recv ZSGSRD 30420
17-03-18 00:05:12.498 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:12.498 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:12.498 -07 000000547 INF: FPGA: Recv ZSGSRD 30413
17-03-18 00:05:12.508 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:12.508 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:12.508 -07 000000608 INF: FPGA: Recv ZSGSRD 30404
17-03-18 00:05:12.518 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:12.518 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:12.518 -07 000000448 INF: FPGA: Recv ZSGSRD 30399
17-03-18 00:05:12.528 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:12.528 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:12.528 -07 000000478 INF: FPGA: Recv ZSGSRD 30402
17-03-18 00:05:12.538 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:12.538 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:12.538 -07 000000576 INF: FPGA: Recv ZSGSRD 30407
17-03-18 00:05:12.548 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:12.548 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:12.548 -07 000000547 INF: FPGA: Recv ZSGSRD 30407
17-03-18 00:05:12.558 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:12.558 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:12.558 -07 000000608 INF: FPGA: Recv ZPIEZORD 26154
17-03-18 00:05:12.568 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:12.568 -07 000000501 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.522 V. Piezo Error = -9.3 V.
17-03-18 00:05:12.568 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30408 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30408 (-134.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30399 (-134.8 uncal um), Max = 30420 (-135.0 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 00:05:12.568 -07 000000501 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30408, posNoise = 12, negNoise = 9
17-03-18 00:05:12.568 -07 000000501 INF: Z Motor: After move to -0.135660, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:12.568 -07 000000501 INF: Z Motor: Settle wait time = 1447 ms, measure time = 110 ms (allowed 150 ms), total time = 1557 ms
17-03-18 00:05:12.568 -07 000000501 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 00:05:12.608 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 00:05:12.608 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:05:12.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:12.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:12.608 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:12.608 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:12.608 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:05:12.608 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:12.618 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:05:12.618 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:05:12.618 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:05:12.618 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:05:12.628 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 00:05:12.628 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 00:05:12.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:05:12.678 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:05:12.978 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:05:12.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:05:12.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:05:12.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 00:05:13.018 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:05:13.018 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 00:05:13.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 00:05:13.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 00:05:13.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:13.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:05:13.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 00:05:13.118 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:13.118 -07 000000502 INF: Autofocus start
17-03-18 00:05:13.118 -07 000000502 INF: MeasureProfile start
17-03-18 00:05:13.118 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:13.128 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:05:13.128 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:05:13.128 -07 000000502 INF: MeasureProfile done
17-03-18 00:05:13.128 -07 000000502 INF: X=32  Z correction [um]=0.1299841
17-03-18 00:05:13.128 -07 000000502 INF: Autofocus finished
17-03-18 00:05:13.328 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:05:13.328 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:05:13.328 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.135670794817802. ----------
17-03-18 00:05:13.328 -07 000000610 INF: Cycle	81	Tile	13	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:05:13.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28176, sync = True, waitForSettling = True)
17-03-18 00:05:13.338 -07 000000610 INF: Z Motor: Moving to -0.128981 mm, started at -0.135671 mm, distance = 6.69 um
17-03-18 00:05:13.338 -07 000000610 INF: FPGA: Xmit ZDACW 28176\n [Z Motor]
17-03-18 00:05:13.338 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 00:05:13.348 -07 000000610 INF: FPGA: 'ZDACW 28176' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:13.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:13.348 -07 000000424 INF: FPGA: Recv ZDACR 28176
17-03-18 00:05:13.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:13.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:05:13.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:13.508 -07 000000502 INF: FPGA: Recv ZSGSRD 29371
17-03-18 00:05:13.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:13.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:13.518 -07 000000608 INF: FPGA: Recv ZSGSRD 29371
17-03-18 00:05:13.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:13.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:13.528 -07 000000424 INF: FPGA: Recv ZSGSRD 29367
17-03-18 00:05:13.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:13.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:13.538 -07 000000576 INF: FPGA: Recv ZSGSRD 29364
17-03-18 00:05:13.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:13.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:13.548 -07 000000424 INF: FPGA: Recv ZSGSRD 29365
17-03-18 00:05:13.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:13.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:13.558 -07 000000608 INF: FPGA: Recv ZSGSRD 29370
17-03-18 00:05:13.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:13.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:13.568 -07 000000576 INF: FPGA: Recv ZSGSRD 29367
17-03-18 00:05:13.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:13.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:13.578 -07 000000424 INF: FPGA: Recv ZSGSRD 29369
17-03-18 00:05:13.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:13.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:13.588 -07 000000502 INF: FPGA: Recv ZSGSRD 29370
17-03-18 00:05:13.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:13.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:13.598 -07 000000424 INF: FPGA: Recv ZSGSRD 29367
17-03-18 00:05:13.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:13.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:13.608 -07 000000608 INF: FPGA: Recv ZPIEZORD 24761
17-03-18 00:05:13.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:13.618 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.299 V. Piezo Error = -10.1 V.
17-03-18 00:05:13.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29368 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29368 (-128.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29364 (-128.2 uncal um), Max = 29371 (-128.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 00:05:13.618 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29368, posNoise = 3, negNoise = 4
17-03-18 00:05:13.618 -07 000000610 INF: Z Motor: After move to -0.128981, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:13.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 00:05:13.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:13.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:13.618 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:13.618 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:05:13.618 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:13.618 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:05:13.618 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:05:13.618 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:13.618 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 00:05:13.618 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:05:13.618 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:05:13.618 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:05:13.628 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:05:13.628 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:05:13.628 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 00:05:13.628 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:05:13.638 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:05:13.638 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:05:13.638 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 00:05:13.638 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:05:13.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28353 150\n [Camera]
17-03-18 00:05:13.848 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:05:14.438 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.997626,
17-03-18 00:05:14.878 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:05:14.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:05:14.878 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:14.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:05:14.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:05:14.888 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:14.888 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:14.888 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 00:05:14.888 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:14.888 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) start.
17-03-18 00:05:15.078 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28353 1422
17-03-18 00:05:15.218 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:05:15.278 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 00:05:15.278 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 00:05:15.278 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:15.288 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:15.288 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 00:05:15.288 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 00:05:15.288 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 00:05:15.288 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:15.288 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:15.298 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 00:05:15.728 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:05:15.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:05:15.728 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:15.728 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:05:15.728 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:15.728 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 00:05:15.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:05:15.728 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:15.728 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:15.728 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 00:05:15.918 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:05:15.918 -07 000000586 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:05:15.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28353 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-18 00:05:15.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:05:15.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.128989614190371. ------
17-03-18 00:05:15.918 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:15.918 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13516 mm
17-03-18 00:05:15.918 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:05:15.928 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:15.928 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 00:05:15.928 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:05:15.928 -07 000000586 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 00:05:15.928 -07 000000586 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 00:05:15.928 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29526, sync = True, waitForSettling = False)
17-03-18 00:05:15.928 -07 000000608 INF: Z Motor: Moving to -0.135161 mm, started at -0.128990 mm, distance = -6.17 um
17-03-18 00:05:15.938 -07 000000586 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:15.938 -07 000000448 INF: FPGA: Recv YRDPOS 143081
17-03-18 00:05:15.948 -07 000000608 INF: FPGA: Xmit ZDACW 29526\n [Z Motor]
17-03-18 00:05:15.948 -07 000000586 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 00:05:15.948 -07 000000586 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:15.948 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 00:05:15.948 -07 000000586 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:05:15.948 -07 000000586 INF: Y Motor: Moving 1342 steps-19
17-03-18 00:05:15.958 -07 000000608 INF: FPGA: 'ZDACW 29526' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 00:05:15.958 -07 000000586 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:05:15.968 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:15.968 -07 000000448 INF: FPGA: Recv ZDACR 29526
17-03-18 00:05:15.978 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:05:15.978 -07 000000608 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 00:05:16.128 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:05:16.128 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 00:05:16.128 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 00:05:16.128 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 00:05:16.128 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:16.138 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 00:05:16.138 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 00:05:16.138 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:16.138 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:16.138 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 00:05:16.138 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:16.148 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 00:05:16.328 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-18 00:05:16.328 -07 000000586 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 00:05:16.378 -07 000000586 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:16.378 -07 000000424 INF: FPGA: Recv YRDPOS 144770
17-03-18 00:05:16.388 -07 000000586 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:16.388 -07 000000586 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:16.388 -07 000000586 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 00:05:16.388 -07 000000586 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.839 mm, average velocity = 2.186 mm/sec
17-03-18 00:05:17.128 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:05:17.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:05:17.338 -07 000000586 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:17.338 -07 000000608 INF: FPGA: Recv YRDPOS 144770
17-03-18 00:05:17.348 -07 000000586 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:17.348 -07 000000586 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:17.368 -07 000000586 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:05:17.368 -07 000000586 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:05:17.368 -07 000000586 INF: Y Motor: Moved to 70.6885 after 1445 ms (table move)
17-03-18 00:05:17.378 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135161 mm (DAC = 29526)
17-03-18 00:05:17.378 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:17.378 -07 000000478 INF: FPGA: Recv ZSGSRD 30339
17-03-18 00:05:17.388 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:05:17.388 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:17.388 -07 000000586 INF: FPGA: Recv ZSGSRD 30331
17-03-18 00:05:17.398 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:17.398 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:17.398 -07 000000576 INF: FPGA: Recv ZSGSRD 30331
17-03-18 00:05:17.408 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:17.408 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:17.408 -07 000000482 INF: FPGA: Recv ZSGSRD 30325
17-03-18 00:05:17.418 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:17.418 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:17.418 -07 000000431 INF: FPGA: Recv ZSGSRD 30338
17-03-18 00:05:17.428 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:17.428 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:17.428 -07 000000482 INF: FPGA: Recv ZSGSRD 30328
17-03-18 00:05:17.438 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:17.438 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:17.438 -07 000000431 INF: FPGA: Recv ZSGSRD 30329
17-03-18 00:05:17.448 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:17.448 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:17.448 -07 000000476 INF: FPGA: Recv ZSGSRD 30327
17-03-18 00:05:17.458 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:17.458 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:17.458 -07 000000502 INF: FPGA: Recv ZSGSRD 30329
17-03-18 00:05:17.468 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:17.468 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:17.468 -07 000000476 INF: FPGA: Recv ZSGSRD 30336
17-03-18 00:05:17.478 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:17.478 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:17.478 -07 000000424 INF: FPGA: Recv ZPIEZORD 26097
17-03-18 00:05:17.488 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:17.488 -07 000000458 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.505 V. Piezo Error = -9.3 V.
17-03-18 00:05:17.488 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30331 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30330 (-134.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30325 (-134.3 uncal um), Max = 30339 (-134.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:05:17.488 -07 000000458 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30331, posNoise = 8, negNoise = 6
17-03-18 00:05:17.488 -07 000000458 INF: Z Motor: After move to -0.135161, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:17.488 -07 000000458 INF: Z Motor: Settle wait time = 1451 ms, measure time = 107 ms (allowed 150 ms), total time = 1558 ms
17-03-18 00:05:17.488 -07 000000458 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 00:05:17.538 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 00:05:17.538 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:05:17.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:17.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:17.538 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:17.538 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:17.538 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:05:17.538 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:17.538 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:05:17.538 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:05:17.548 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:05:17.548 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:05:17.558 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 00:05:17.558 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 00:05:17.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:05:17.608 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:05:17.908 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:05:17.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:05:17.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:05:17.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2638394752, 0x0, 559484976) start.
17-03-18 00:05:17.938 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:05:17.948 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 00:05:17.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 00:05:18.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2638394752, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 00:05:18.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:18.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:05:18.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:05:18.048 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:18.048 -07 000000012 INF: Autofocus start
17-03-18 00:05:18.048 -07 000000012 INF: MeasureProfile start
17-03-18 00:05:18.048 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:18.058 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:05:18.058 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:05:18.058 -07 000000012 INF: MeasureProfile done
17-03-18 00:05:18.058 -07 000000012 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 00:05:18.058 -07 000000012 INF: Autofocus finished
17-03-18 00:05:18.258 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:05:18.258 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:05:18.258 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135176130482887. ----------
17-03-18 00:05:18.258 -07 000000610 INF: Cycle	81	Tile	14	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:05:18.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28021, sync = True, waitForSettling = True)
17-03-18 00:05:18.268 -07 000000610 INF: Z Motor: Moving to -0.128272 mm, started at -0.135176 mm, distance = 6.90 um
17-03-18 00:05:18.268 -07 000000610 INF: FPGA: Xmit ZDACW 28021\n [Z Motor]
17-03-18 00:05:18.268 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 00:05:18.278 -07 000000610 INF: FPGA: 'ZDACW 28021' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:05:18.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:18.278 -07 000000424 INF: FPGA: Recv ZDACR 28021
17-03-18 00:05:18.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:18.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:05:18.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:18.438 -07 000000429 INF: FPGA: Recv ZSGSRD 29264
17-03-18 00:05:18.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:18.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:18.448 -07 000000012 INF: FPGA: Recv ZSGSRD 29254
17-03-18 00:05:18.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:18.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:18.458 -07 000000478 INF: FPGA: Recv ZSGSRD 29257
17-03-18 00:05:18.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:18.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:18.468 -07 000000448 INF: FPGA: Recv ZSGSRD 29254
17-03-18 00:05:18.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:18.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:18.478 -07 000000424 INF: FPGA: Recv ZSGSRD 29255
17-03-18 00:05:18.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:18.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:18.488 -07 000000424 INF: FPGA: Recv ZSGSRD 29260
17-03-18 00:05:18.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:18.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:18.498 -07 000000476 INF: FPGA: Recv ZSGSRD 29256
17-03-18 00:05:18.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:18.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:18.508 -07 000000424 INF: FPGA: Recv ZSGSRD 29257
17-03-18 00:05:18.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:18.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:18.518 -07 000000424 INF: FPGA: Recv ZSGSRD 29263
17-03-18 00:05:18.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:18.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:18.528 -07 000000424 INF: FPGA: Recv ZSGSRD 29257
17-03-18 00:05:18.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:18.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:18.538 -07 000000424 INF: FPGA: Recv ZPIEZORD 24657
17-03-18 00:05:18.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:18.548 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -10.1 V.
17-03-18 00:05:18.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29258 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29257 (-127.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29254 (-127.5 uncal um), Max = 29264 (-127.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 00:05:18.548 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29258, posNoise = 6, negNoise = 4
17-03-18 00:05:18.548 -07 000000610 INF: Z Motor: After move to -0.128272, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:18.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 00:05:18.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:18.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:18.548 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:18.548 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:18.548 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:05:18.548 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:18.548 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:05:18.548 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:05:18.548 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:05:18.548 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:05:18.548 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 00:05:18.548 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:05:18.558 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:05:18.558 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:05:18.558 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 00:05:18.558 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:05:18.568 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:05:18.568 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 00:05:18.568 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 00:05:18.568 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 00:05:18.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28198 150\n [Camera]
17-03-18 00:05:18.778 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 00:05:19.798 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.973092,
17-03-18 00:05:19.808 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:05:19.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:05:19.808 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:19.808 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:19.808 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 00:05:19.818 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:05:19.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:05:19.818 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:19.818 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:19.818 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 00:05:19.998 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28198 1422
17-03-18 00:05:20.148 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:05:20.208 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 00:05:20.208 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 00:05:20.208 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:20.208 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 00:05:20.208 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 00:05:20.208 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:20.208 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:20.208 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 00:05:20.218 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:20.218 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 00:05:20.658 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:05:20.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:05:20.658 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:20.658 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:20.658 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 00:05:20.658 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:05:20.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:05:20.658 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:20.658 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:20.658 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 00:05:20.848 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:05:20.848 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:05:20.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28198 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-18 00:05:20.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:05:20.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128282950854777. ------
17-03-18 00:05:20.848 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:20.848 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13474 mm
17-03-18 00:05:20.848 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:05:20.858 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:20.858 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 00:05:20.858 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:05:20.858 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 00:05:20.858 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 00:05:20.858 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29434, sync = True, waitForSettling = False)
17-03-18 00:05:20.858 -07 000000424 INF: Z Motor: Moving to -0.134740 mm, started at -0.128283 mm, distance = -6.46 um
17-03-18 00:05:20.868 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:20.868 -07 000000431 INF: FPGA: Recv YRDPOS 144770
17-03-18 00:05:20.878 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 00:05:20.878 -07 000000424 INF: FPGA: Xmit ZDACW 29434\n [Z Motor]
17-03-18 00:05:20.878 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:20.878 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:05:20.878 -07 000000512 INF: Y Motor: Moving 1351 steps-29
17-03-18 00:05:20.878 -07 000000586 INF: FPGA: Recv ZDACW
17-03-18 00:05:20.888 -07 000000424 INF: FPGA: 'ZDACW 29434' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 00:05:20.888 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:20.888 -07 000000501 INF: FPGA: Recv ZDACR 29434
17-03-18 00:05:20.898 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:05:20.898 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:20.898 -07 000000424 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 00:05:21.058 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:05:21.058 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:05:21.058 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 00:05:21.058 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 00:05:21.058 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:21.058 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 00:05:21.058 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 00:05:21.058 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:21.068 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:21.068 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 00:05:21.068 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 00:05:21.068 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 00:05:21.268 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-18 00:05:21.268 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 00:05:21.318 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:21.318 -07 000000618 INF: FPGA: Recv YRDPOS 146471
17-03-18 00:05:21.328 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:05:21.328 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:21.328 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 00:05:21.328 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.116 mm/sec
17-03-18 00:05:22.128 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:05:22.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:05:22.278 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:22.278 -07 000000012 INF: FPGA: Recv YRDPOS 146471
17-03-18 00:05:22.288 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:22.288 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:22.308 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:05:22.308 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:05:22.308 -07 000000512 INF: Y Motor: Moved to 71.5190 after 1456 ms (table move)
17-03-18 00:05:22.318 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134740 mm (DAC = 29434)
17-03-18 00:05:22.318 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:22.318 -07 000000618 INF: FPGA: Recv ZSGSRD 30268
17-03-18 00:05:22.328 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:05:22.328 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:22.328 -07 000000409 INF: FPGA: Recv ZSGSRD 30256
17-03-18 00:05:22.338 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:22.338 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:22.338 -07 000000448 INF: FPGA: Recv ZSGSRD 30269
17-03-18 00:05:22.348 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:22.348 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:22.348 -07 000000608 INF: FPGA: Recv ZSGSRD 30268
17-03-18 00:05:22.358 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:22.358 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:22.358 -07 000000618 INF: FPGA: Recv ZSGSRD 30269
17-03-18 00:05:22.368 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:22.368 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:22.368 -07 000000561 INF: FPGA: Recv ZSGSRD 30267
17-03-18 00:05:22.378 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:22.378 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:22.378 -07 000000431 INF: FPGA: Recv ZSGSRD 30259
17-03-18 00:05:22.388 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:22.388 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:22.388 -07 000000415 INF: FPGA: Recv ZSGSRD 30261
17-03-18 00:05:22.398 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:22.398 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:22.398 -07 000000012 INF: FPGA: Recv ZSGSRD 30260
17-03-18 00:05:22.408 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:22.408 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:22.408 -07 000000458 INF: FPGA: Recv ZSGSRD 30267
17-03-18 00:05:22.418 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:05:22.418 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:22.418 -07 000000448 INF: FPGA: Recv ZPIEZORD 26030
17-03-18 00:05:22.428 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:22.428 -07 000000547 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.491 V. Piezo Error = -9.3 V.
17-03-18 00:05:22.428 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30264 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30267 (-134.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30256 (-133.9 uncal um), Max = 30269 (-134.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 00:05:22.428 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30264, posNoise = 5, negNoise = 8
17-03-18 00:05:22.428 -07 000000547 INF: Z Motor: After move to -0.134740, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:22.428 -07 000000547 INF: Z Motor: Settle wait time = 1459 ms, measure time = 110 ms (allowed 150 ms), total time = 1569 ms
17-03-18 00:05:22.428 -07 000000547 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 00:05:22.468 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 00:05:22.468 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:05:22.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:22.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:22.468 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:22.468 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:05:22.468 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:22.468 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:22.468 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 00:05:22.468 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:05:22.478 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:05:22.478 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:05:22.478 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 00:05:22.478 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 00:05:22.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:05:22.528 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:05:22.828 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:05:22.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:05:22.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:05:22.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619685872, 0x0, 559484976) start.
17-03-18 00:05:22.868 -07 000000415 INF: FPGA: Recv @CAMSNAP 383
17-03-18 00:05:22.878 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-18 00:05:22.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 388 ms overall
17-03-18 00:05:22.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619685872, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 00:05:22.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:22.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:05:22.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 00:05:22.978 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:22.978 -07 000000626 INF: Autofocus start
17-03-18 00:05:22.978 -07 000000626 INF: MeasureProfile start
17-03-18 00:05:22.978 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:22.988 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:05:22.988 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:05:22.988 -07 000000626 INF: MeasureProfile done
17-03-18 00:05:22.988 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-18 00:05:22.988 -07 000000626 INF: Autofocus finished
17-03-18 00:05:23.188 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:05:23.188 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:05:23.188 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.134745708269389. ----------
17-03-18 00:05:23.188 -07 000000610 INF: Cycle	81	Tile	15	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:05:23.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27941, sync = True, waitForSettling = True)
17-03-18 00:05:23.198 -07 000000610 INF: Z Motor: Moving to -0.127906 mm, started at -0.134746 mm, distance = 6.84 um
17-03-18 00:05:23.198 -07 000000610 INF: FPGA: Xmit ZDACW 27941\n [Z Motor]
17-03-18 00:05:23.198 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 00:05:23.208 -07 000000610 INF: FPGA: 'ZDACW 27941' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:23.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:23.208 -07 000000561 INF: FPGA: Recv ZDACR 27941
17-03-18 00:05:23.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:23.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:05:23.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:23.368 -07 000000012 INF: FPGA: Recv ZSGSRD 29197
17-03-18 00:05:23.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:23.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:23.378 -07 000000561 INF: FPGA: Recv ZSGSRD 29203
17-03-18 00:05:23.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:23.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:23.388 -07 000000561 INF: FPGA: Recv ZSGSRD 29204
17-03-18 00:05:23.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:23.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:23.398 -07 000000561 INF: FPGA: Recv ZSGSRD 29201
17-03-18 00:05:23.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:23.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:23.408 -07 000000561 INF: FPGA: Recv ZSGSRD 29200
17-03-18 00:05:23.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:23.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:23.418 -07 000000561 INF: FPGA: Recv ZSGSRD 29199
17-03-18 00:05:23.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:23.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:23.428 -07 000000561 INF: FPGA: Recv ZSGSRD 29197
17-03-18 00:05:23.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:23.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:23.438 -07 000000561 INF: FPGA: Recv ZSGSRD 29197
17-03-18 00:05:23.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:23.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:23.448 -07 000000561 INF: FPGA: Recv ZSGSRD 29204
17-03-18 00:05:23.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:23.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:23.458 -07 000000561 INF: FPGA: Recv ZSGSRD 29203
17-03-18 00:05:23.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:23.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:23.468 -07 000000561 INF: FPGA: Recv ZPIEZORD 24585
17-03-18 00:05:23.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:23.478 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.264 V. Piezo Error = -10.1 V.
17-03-18 00:05:23.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29200 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29200 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29197 (-127.1 uncal um), Max = 29204 (-127.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 00:05:23.478 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29200, posNoise = 4, negNoise = 3
17-03-18 00:05:23.478 -07 000000610 INF: Z Motor: After move to -0.127906, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:23.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 00:05:23.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:23.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:23.478 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:23.478 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:23.478 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:05:23.478 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:23.478 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:05:23.478 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:05:23.488 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:05:23.488 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:05:23.498 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:05:23.498 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:05:23.508 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:05:23.508 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:05:23.508 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:05:23.508 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:05:23.508 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 00:05:23.508 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:05:23.518 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 00:05:23.518 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 00:05:23.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28118 150\n [Camera]
17-03-18 00:05:23.718 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:05:24.758 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:05:24.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:05:24.758 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:24.758 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:24.758 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 00:05:25.158 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 00:05:25.158 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 00:05:25.158 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:25.168 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:25.168 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 00:05:25.178 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:05:25.178 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28118 1422
17-03-18 00:05:25.178 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:05:25.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:05:25.178 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:25.178 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:25.178 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 00:05:25.578 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 00:05:25.578 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 00:05:25.578 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:25.578 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 00:05:25.588 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 00:05:25.608 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.983999,
17-03-18 00:05:25.608 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:05:25.608 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:05:25.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:05:25.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:05:25.608 -07 000000586 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:25.608 -07 000000586 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:25.608 -07 000000586 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 00:05:25.608 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:25.608 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:25.608 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 00:05:25.788 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:05:25.798 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:05:25.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28118 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall
17-03-18 00:05:25.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:05:25.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.127910346550555. ------
17-03-18 00:05:25.798 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:25.798 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13429 mm
17-03-18 00:05:25.798 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:05:25.798 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:25.798 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 00:05:25.798 -07 000000561 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 00:05:25.798 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29336, sync = True, waitForSettling = False)
17-03-18 00:05:25.798 -07 000000608 INF: Z Motor: Moving to -0.134292 mm, started at -0.127910 mm, distance = -6.38 um
17-03-18 00:05:25.808 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:05:25.808 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:25.808 -07 000000429 INF: FPGA: Recv YRDPOS 146471
17-03-18 00:05:25.818 -07 000000608 INF: FPGA: Xmit ZDACW 29336\n [Z Motor]
17-03-18 00:05:25.818 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 00:05:25.818 -07 000000561 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:25.818 -07 000000561 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:05:25.818 -07 000000561 INF: Y Motor: Moving 1350 steps-28
17-03-18 00:05:25.818 -07 000000458 INF: FPGA: Recv ZDACW
17-03-18 00:05:25.828 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:05:25.828 -07 000000608 INF: FPGA: 'ZDACW 29336' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 00:05:25.838 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:05:25.848 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:25.848 -07 000000482 INF: FPGA: Recv ZDACR 29336
17-03-18 00:05:25.858 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:05:25.858 -07 000000608 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 00:05:25.998 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 00:05:25.998 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 00:05:25.998 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:25.998 -07 000000586 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 00:05:25.998 -07 000000586 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 00:05:25.998 -07 000000586 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:25.998 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:26.008 -07 000000586 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 00:05:26.008 -07 000000586 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 00:05:26.008 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 00:05:26.028 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:05:26.028 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 00:05:26.208 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 00:05:26.208 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 00:05:26.258 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:26.258 -07 000000586 INF: FPGA: Recv YRDPOS 148172
17-03-18 00:05:26.268 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:26.268 -07 000000561 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:26.268 -07 000000561 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 00:05:26.268 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 00:05:27.128 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:05:27.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:05:27.218 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:27.218 -07 000000502 INF: FPGA: Recv YRDPOS 148172
17-03-18 00:05:27.228 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:27.228 -07 000000561 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:27.248 -07 000000561 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:05:27.248 -07 000000561 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:05:27.248 -07 000000561 INF: Y Motor: Moved to 72.3496 after 1449 ms (table move)
17-03-18 00:05:27.258 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134292 mm (DAC = 29336)
17-03-18 00:05:27.258 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:27.258 -07 000000424 INF: FPGA: Recv ZSGSRD 30192
17-03-18 00:05:27.268 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:05:27.268 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:27.268 -07 000000482 INF: FPGA: Recv ZSGSRD 30199
17-03-18 00:05:27.278 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:05:27.278 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:27.278 -07 000000502 INF: FPGA: Recv ZSGSRD 30199
17-03-18 00:05:27.288 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:27.288 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:27.288 -07 000000561 INF: FPGA: Recv ZSGSRD 30202
17-03-18 00:05:27.298 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:27.298 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:27.298 -07 000000424 INF: FPGA: Recv ZSGSRD 30193
17-03-18 00:05:27.308 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:27.308 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:27.308 -07 000000576 INF: FPGA: Recv ZSGSRD 30191
17-03-18 00:05:27.318 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:27.318 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:27.318 -07 000000424 INF: FPGA: Recv ZSGSRD 30196
17-03-18 00:05:27.328 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:27.328 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:27.328 -07 000000561 INF: FPGA: Recv ZSGSRD 30193
17-03-18 00:05:27.338 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:27.338 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:27.338 -07 000000482 INF: FPGA: Recv ZSGSRD 30189
17-03-18 00:05:27.348 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:27.348 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:27.348 -07 000000429 INF: FPGA: Recv ZSGSRD 30192
17-03-18 00:05:27.358 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:27.358 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:27.358 -07 000000482 INF: FPGA: Recv ZPIEZORD 25952
17-03-18 00:05:27.368 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:27.368 -07 000000476 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.476 V. Piezo Error = -9.3 V.
17-03-18 00:05:27.368 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30195 (-133.5 uncal um), Error = 0.8 uncal um, Median = 30193 (-133.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30189 (-133.5 uncal um), Max = 30202 (-133.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:05:27.368 -07 000000476 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30195, posNoise = 7, negNoise = 6
17-03-18 00:05:27.368 -07 000000476 INF: Z Motor: After move to -0.134292, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:27.368 -07 000000476 INF: Z Motor: Settle wait time = 1452 ms, measure time = 109 ms (allowed 150 ms), total time = 1561 ms
17-03-18 00:05:27.368 -07 000000476 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 00:05:27.418 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 00:05:27.418 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:05:27.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:27.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:27.418 -07 000000586 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:27.418 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:27.418 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:05:27.418 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:27.418 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 00:05:27.418 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:05:27.428 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:05:27.428 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:05:27.428 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 00:05:27.428 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 00:05:27.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:05:27.478 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:05:27.778 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:05:27.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:05:27.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:05:27.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 00:05:27.818 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:05:27.818 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 00:05:27.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 00:05:27.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 00:05:27.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:27.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 00:05:27.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 00:05:27.918 -07 000000478 INF: Autofocus start
17-03-18 00:05:27.918 -07 000000478 INF: MeasureProfile start
17-03-18 00:05:27.918 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:27.918 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:27.928 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:05:27.928 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:05:27.928 -07 000000478 INF: MeasureProfile done
17-03-18 00:05:27.928 -07 000000478 INF: X=16  Z correction [um]=0.0530179
17-03-18 00:05:27.928 -07 000000478 INF: Autofocus finished
17-03-18 00:05:28.718 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:05:28.718 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 780 ms to get response, and 790 ms overall
17-03-18 00:05:28.718 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.134302437631607. ----------
17-03-18 00:05:28.718 -07 000000610 INF: Cycle	81	Tile	16	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:05:28.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27860, sync = True, waitForSettling = True)
17-03-18 00:05:28.718 -07 000000610 INF: Z Motor: Moving to -0.127535 mm, started at -0.134302 mm, distance = 6.77 um
17-03-18 00:05:28.718 -07 000000610 INF: FPGA: Xmit ZDACW 27860\n [Z Motor]
17-03-18 00:05:28.728 -07 000000476 INF: FPGA: Recv ZDACW
17-03-18 00:05:28.728 -07 000000610 INF: FPGA: 'ZDACW 27860' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 00:05:28.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:28.728 -07 000000586 INF: FPGA: Recv ZDACR 27860
17-03-18 00:05:28.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:05:28.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:05:28.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:28.888 -07 000000476 INF: FPGA: Recv ZSGSRD 29148
17-03-18 00:05:28.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:28.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:28.898 -07 000000482 INF: FPGA: Recv ZSGSRD 29139
17-03-18 00:05:28.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:28.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:28.908 -07 000000502 INF: FPGA: Recv ZSGSRD 29141
17-03-18 00:05:28.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:28.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:28.918 -07 000000586 INF: FPGA: Recv ZSGSRD 29140
17-03-18 00:05:28.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:28.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:28.928 -07 000000476 INF: FPGA: Recv ZSGSRD 29145
17-03-18 00:05:28.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:28.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:28.938 -07 000000482 INF: FPGA: Recv ZSGSRD 29148
17-03-18 00:05:28.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:28.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:28.948 -07 000000502 INF: FPGA: Recv ZSGSRD 29146
17-03-18 00:05:28.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:28.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:28.958 -07 000000482 INF: FPGA: Recv ZSGSRD 29141
17-03-18 00:05:28.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:28.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:28.968 -07 000000476 INF: FPGA: Recv ZSGSRD 29141
17-03-18 00:05:28.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:28.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:28.978 -07 000000586 INF: FPGA: Recv ZSGSRD 29143
17-03-18 00:05:28.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:28.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:28.988 -07 000000502 INF: FPGA: Recv ZPIEZORD 24516
17-03-18 00:05:28.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:28.998 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.251 V. Piezo Error = -10.1 V.
17-03-18 00:05:28.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29143 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29142 (-126.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29139 (-126.7 uncal um), Max = 29148 (-126.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 00:05:28.998 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29143, posNoise = 5, negNoise = 4
17-03-18 00:05:28.998 -07 000000610 INF: Z Motor: After move to -0.127535, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:28.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 271 ms)
17-03-18 00:05:28.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:28.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:28.998 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:28.998 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:28.998 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:05:28.998 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:05:28.998 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:05:28.998 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:28.998 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:05:28.998 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:05:28.998 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:05:28.998 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:05:29.008 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 00:05:29.008 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:05:29.008 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:05:29.008 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:05:29.018 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:05:29.018 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:05:29.018 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:05:29.018 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 00:05:29.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28037 150\n [Camera]
17-03-18 00:05:29.228 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:05:30.258 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:05:30.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:05:30.258 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:30.258 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:30.258 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 00:05:30.268 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:05:30.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:05:30.268 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:30.268 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:30.268 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 00:05:30.458 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28037 1422
17-03-18 00:05:30.608 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:05:30.658 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 00:05:30.658 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 00:05:30.658 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:30.668 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 00:05:30.668 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 00:05:30.668 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:30.668 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:30.668 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 00:05:30.668 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:30.678 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 00:05:31.108 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:05:31.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:05:31.108 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:31.228 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:05:31.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:05:31.238 -07 000000586 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:31.248 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:31.248 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 00:05:31.248 -07 000000586 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:31.248 -07 000000586 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 00:05:31.268 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 3.999021,
17-03-18 00:05:31.298 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:05:31.298 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:05:31.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28037 150' command took 2 ms to send, 2265 ms to get response, and 2274 ms overall
17-03-18 00:05:31.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:05:31.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.127544166458475. ------
17-03-18 00:05:31.308 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13408 mm
17-03-18 00:05:31.308 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:05:31.308 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:31.308 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:31.308 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 00:05:31.308 -07 000000618 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 00:05:31.308 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 29291, sync = True, waitForSettling = False)
17-03-18 00:05:31.308 -07 000000429 INF: Z Motor: Moving to -0.134086 mm, started at -0.127544 mm, distance = -6.54 um
17-03-18 00:05:31.318 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:31.318 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:31.318 -07 000000576 INF: FPGA: Recv YRDPOS 148173
17-03-18 00:05:31.328 -07 000000429 INF: FPGA: Xmit ZDACW 29291\n [Z Motor]
17-03-18 00:05:31.328 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 00:05:31.328 -07 000000618 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:31.328 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 00:05:31.328 -07 000000618 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:05:31.328 -07 000000618 INF: Y Motor: Moving 1348 steps-27
17-03-18 00:05:31.338 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:05:31.338 -07 000000429 INF: FPGA: 'ZDACW 29291' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 00:05:31.348 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:05:31.358 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:31.358 -07 000000478 INF: FPGA: Recv ZDACR 29291
17-03-18 00:05:31.368 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 00:05:31.368 -07 000000429 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 00:05:31.538 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:05:31.538 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 00:05:31.638 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 00:05:31.638 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 00:05:31.638 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:31.638 -07 000000586 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 00:05:31.638 -07 000000586 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 00:05:31.638 -07 000000586 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:31.638 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:31.638 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 537 ms.
17-03-18 00:05:31.638 -07 000000586 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:31.648 -07 000000586 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 00:05:31.718 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-18 00:05:31.718 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 00:05:31.768 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:31.768 -07 000000512 INF: FPGA: Recv YRDPOS 149865
17-03-18 00:05:31.778 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:05:31.778 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:31.778 -07 000000618 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 00:05:31.778 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.843 mm, average velocity = 2.162 mm/sec
17-03-18 00:05:32.128 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:05:32.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:05:32.728 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:32.728 -07 000000502 INF: FPGA: Recv YRDPOS 149865
17-03-18 00:05:32.738 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:32.738 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:32.758 -07 000000618 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:05:32.758 -07 000000618 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:05:32.758 -07 000000618 INF: Y Motor: Moved to 73.1763 after 1453 ms (table move)
17-03-18 00:05:32.758 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134086 mm (DAC = 29291)
17-03-18 00:05:32.768 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:32.768 -07 000000478 INF: FPGA: Recv ZSGSRD 30164
17-03-18 00:05:32.778 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:32.778 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:32.778 -07 000000626 INF: FPGA: Recv ZSGSRD 30162
17-03-18 00:05:32.788 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:32.788 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:32.788 -07 000000429 INF: FPGA: Recv ZSGSRD 30162
17-03-18 00:05:32.798 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:32.798 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:32.798 -07 000000618 INF: FPGA: Recv ZSGSRD 30154
17-03-18 00:05:32.808 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:32.808 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:32.808 -07 000000431 INF: FPGA: Recv ZSGSRD 30164
17-03-18 00:05:32.818 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:32.818 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:32.818 -07 000000547 INF: FPGA: Recv ZSGSRD 30171
17-03-18 00:05:32.828 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:32.828 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:32.828 -07 000000482 INF: FPGA: Recv ZSGSRD 30154
17-03-18 00:05:32.838 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:32.838 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:32.838 -07 000000424 INF: FPGA: Recv ZSGSRD 30164
17-03-18 00:05:32.848 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:32.848 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:32.848 -07 000000586 INF: FPGA: Recv ZSGSRD 30160
17-03-18 00:05:32.858 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:32.858 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:32.858 -07 000000576 INF: FPGA: Recv ZSGSRD 30164
17-03-18 00:05:32.868 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:32.868 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:32.868 -07 000000482 INF: FPGA: Recv ZPIEZORD 25920
17-03-18 00:05:32.878 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:32.878 -07 000000458 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.470 V. Piezo Error = -9.3 V.
17-03-18 00:05:32.878 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.1 um, Read 10 ADC samples: Avg = 30162 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30163 (-133.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30154 (-133.3 uncal um), Max = 30171 (-133.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 00:05:32.878 -07 000000458 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30162, posNoise = 9, negNoise = 8
17-03-18 00:05:32.878 -07 000000458 INF: Z Motor: After move to -0.134086, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:32.878 -07 000000458 INF: Z Motor: Settle wait time = 1455 ms, measure time = 111 ms (allowed 150 ms), total time = 1566 ms
17-03-18 00:05:32.878 -07 000000458 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 00:05:32.918 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 00:05:32.918 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:05:32.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:32.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:32.918 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:32.918 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:32.918 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:05:32.918 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:32.918 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:05:32.918 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:05:32.928 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:05:32.928 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:05:32.938 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 00:05:32.938 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 00:05:32.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:05:32.988 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:05:33.288 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:05:33.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:05:33.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:05:33.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-18 00:05:33.328 -07 000000547 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:05:33.328 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-18 00:05:33.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 00:05:33.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 00:05:33.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:33.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:05:33.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 00:05:33.428 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:33.428 -07 000000626 INF: Autofocus start
17-03-18 00:05:33.428 -07 000000626 INF: MeasureProfile start
17-03-18 00:05:33.428 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:33.438 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:05:33.438 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:05:33.438 -07 000000626 INF: MeasureProfile done
17-03-18 00:05:33.438 -07 000000626 INF: X=37  Z correction [um]=0.1540361
17-03-18 00:05:33.438 -07 000000626 INF: Autofocus finished
17-03-18 00:05:33.638 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:05:33.638 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:05:33.638 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134090438630929. ----------
17-03-18 00:05:33.638 -07 000000610 INF: Cycle	81	Tile	17	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:05:33.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27837, sync = True, waitForSettling = True)
17-03-18 00:05:33.648 -07 000000610 INF: Z Motor: Moving to -0.127430 mm, started at -0.134090 mm, distance = 6.66 um
17-03-18 00:05:33.648 -07 000000610 INF: FPGA: Xmit ZDACW 27837\n [Z Motor]
17-03-18 00:05:33.648 -07 000000482 INF: FPGA: Recv ZDACW
17-03-18 00:05:33.658 -07 000000610 INF: FPGA: 'ZDACW 27837' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:05:33.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:33.658 -07 000000586 INF: FPGA: Recv ZDACR 27837
17-03-18 00:05:33.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:33.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:05:33.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:33.818 -07 000000626 INF: FPGA: Recv ZSGSRD 29125
17-03-18 00:05:33.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:33.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:33.828 -07 000000476 INF: FPGA: Recv ZSGSRD 29126
17-03-18 00:05:33.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:33.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:33.838 -07 000000482 INF: FPGA: Recv ZSGSRD 29134
17-03-18 00:05:33.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:33.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:33.848 -07 000000618 INF: FPGA: Recv ZSGSRD 29125
17-03-18 00:05:33.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:33.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:33.858 -07 000000448 INF: FPGA: Recv ZSGSRD 29129
17-03-18 00:05:33.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:33.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:33.868 -07 000000502 INF: FPGA: Recv ZSGSRD 29120
17-03-18 00:05:33.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:33.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:33.878 -07 000000478 INF: FPGA: Recv ZSGSRD 29131
17-03-18 00:05:33.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:33.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:33.888 -07 000000424 INF: FPGA: Recv ZSGSRD 29125
17-03-18 00:05:33.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:33.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:33.898 -07 000000501 INF: FPGA: Recv ZSGSRD 29127
17-03-18 00:05:33.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:33.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:33.908 -07 000000502 INF: FPGA: Recv ZSGSRD 29129
17-03-18 00:05:33.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:33.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:33.918 -07 000000482 INF: FPGA: Recv ZPIEZORD 24540
17-03-18 00:05:33.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:33.928 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.248 V. Piezo Error = -10.1 V.
17-03-18 00:05:33.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29127 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29126 (-126.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29120 (-126.6 uncal um), Max = 29134 (-126.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 00:05:33.928 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29127, posNoise = 7, negNoise = 7
17-03-18 00:05:33.928 -07 000000610 INF: Z Motor: After move to -0.127430, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:33.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 00:05:33.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:33.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:33.928 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:33.928 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:05:33.928 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:05:33.928 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:05:33.928 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:33.928 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:33.928 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:05:33.928 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:05:33.928 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:05:33.928 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:05:33.938 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 00:05:33.938 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:05:33.938 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:05:33.938 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:05:33.948 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 00:05:33.948 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:05:33.948 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:05:33.948 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:05:33.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28014 150\n [Camera]
17-03-18 00:05:34.158 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:05:35.188 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:05:35.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:05:35.198 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:35.198 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:05:35.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:05:35.198 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:35.198 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:35.198 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-18 00:05:35.198 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:35.198 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-18 00:05:35.388 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28014 1422
17-03-18 00:05:35.538 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:05:35.598 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 00:05:35.598 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 00:05:35.598 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:35.598 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 00:05:35.598 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 00:05:35.598 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:35.598 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:35.598 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 00:05:35.598 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:35.608 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 00:05:36.038 -07 000000586 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:05:36.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:05:36.038 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:36.138 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:05:36.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:05:36.138 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:36.148 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:36.148 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1403846816, 0x0, 418435064) start.
17-03-18 00:05:36.148 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:36.148 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 00:05:36.228 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:05:36.228 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:05:36.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28014 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall
17-03-18 00:05:36.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:05:36.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127441379064206. ------
17-03-18 00:05:36.228 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:36.228 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13374 mm
17-03-18 00:05:36.228 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:05:36.238 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 00:05:36.238 -07 000000478 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 00:05:36.238 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:36.238 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:36.238 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29216, sync = True, waitForSettling = False)
17-03-18 00:05:36.238 -07 000000431 INF: Z Motor: Moving to -0.133742 mm, started at -0.127441 mm, distance = -6.30 um
17-03-18 00:05:36.238 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 00:05:36.238 -07 000000448 INF: FPGA: Recv YRDPOS 149865
17-03-18 00:05:36.248 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:36.248 -07 000000478 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:36.248 -07 000000431 INF: FPGA: Xmit ZDACW 29216\n [Z Motor]
17-03-18 00:05:36.248 -07 000000478 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:05:36.248 -07 000000478 INF: Y Motor: Moving 1354 steps-33
17-03-18 00:05:36.248 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 00:05:36.258 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:05:36.258 -07 000000431 INF: FPGA: 'ZDACW 29216' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 00:05:36.268 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:05:36.278 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:36.278 -07 000000626 INF: FPGA: Recv ZDACR 29216
17-03-18 00:05:36.288 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 00:05:36.288 -07 000000431 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 00:05:36.458 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:05:36.458 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 223 ms overall
17-03-18 00:05:36.548 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1403846816, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 00:05:36.548 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 00:05:36.548 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:36.548 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 00:05:36.548 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 00:05:36.548 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:36.548 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:36.558 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:36.558 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 00:05:36.558 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 00:05:36.638 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.011254,
17-03-18 00:05:36.638 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 00:05:36.638 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 00:05:36.678 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:36.678 -07 000000502 INF: FPGA: Recv YRDPOS 151569
17-03-18 00:05:36.688 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 00:05:36.688 -07 000000478 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:36.688 -07 000000478 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 00:05:36.688 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-18 00:05:37.128 -07 000000586 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:05:37.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:05:37.638 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:37.638 -07 000000431 INF: FPGA: Recv YRDPOS 151569
17-03-18 00:05:37.648 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:37.648 -07 000000478 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:37.668 -07 000000478 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:05:37.668 -07 000000478 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 00:05:37.668 -07 000000478 INF: Y Motor: Moved to 74.0083 after 1434 ms (table move)
17-03-18 00:05:37.678 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133742 mm (DAC = 29216)
17-03-18 00:05:37.678 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:37.678 -07 000000476 INF: FPGA: Recv ZSGSRD 30109
17-03-18 00:05:37.688 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:05:37.688 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:37.688 -07 000000547 INF: FPGA: Recv ZSGSRD 30104
17-03-18 00:05:37.698 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:37.698 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:37.698 -07 000000476 INF: FPGA: Recv ZSGSRD 30112
17-03-18 00:05:37.708 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:37.708 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:37.708 -07 000000478 INF: FPGA: Recv ZSGSRD 30112
17-03-18 00:05:37.718 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:37.718 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:37.718 -07 000000576 INF: FPGA: Recv ZSGSRD 30111
17-03-18 00:05:37.728 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:37.728 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:37.728 -07 000000576 INF: FPGA: Recv ZSGSRD 30107
17-03-18 00:05:37.738 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:37.738 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:37.738 -07 000000576 INF: FPGA: Recv ZSGSRD 30106
17-03-18 00:05:37.748 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:37.748 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:37.748 -07 000000431 INF: FPGA: Recv ZSGSRD 30113
17-03-18 00:05:37.758 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:37.758 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:37.758 -07 000000431 INF: FPGA: Recv ZSGSRD 30105
17-03-18 00:05:37.768 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:37.768 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:37.768 -07 000000431 INF: FPGA: Recv ZSGSRD 30106
17-03-18 00:05:37.778 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:37.778 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:37.778 -07 000000431 INF: FPGA: Recv ZPIEZORD 25856
17-03-18 00:05:37.788 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:37.788 -07 000000618 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.458 V. Piezo Error = -9.3 V.
17-03-18 00:05:37.788 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30108 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30108 (-133.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30104 (-132.9 uncal um), Max = 30113 (-133.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 00:05:37.788 -07 000000618 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30108, posNoise = 5, negNoise = 4
17-03-18 00:05:37.788 -07 000000618 INF: Z Motor: After move to -0.133742, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:37.788 -07 000000618 INF: Z Motor: Settle wait time = 1439 ms, measure time = 110 ms (allowed 150 ms), total time = 1549 ms
17-03-18 00:05:37.788 -07 000000618 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 00:05:37.828 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-18 00:05:37.828 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:05:37.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:37.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:37.828 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:37.828 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:37.828 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:05:37.828 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:37.838 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 00:05:37.838 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:05:37.838 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:05:37.838 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:05:37.848 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 00:05:37.848 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 00:05:37.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:05:37.888 -07 000000586 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:05:38.188 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:05:38.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:05:38.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:05:38.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1456144144, 0x0, 559484976) start.
17-03-18 00:05:38.228 -07 000000547 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:05:38.228 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 00:05:38.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 00:05:38.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1456144144, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 00:05:38.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:38.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:05:38.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 00:05:38.328 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:38.328 -07 000000431 INF: Autofocus start
17-03-18 00:05:38.328 -07 000000431 INF: MeasureProfile start
17-03-18 00:05:38.328 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:38.338 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:05:38.338 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:05:38.338 -07 000000431 INF: MeasureProfile done
17-03-18 00:05:38.338 -07 000000431 INF: X=0  Z correction [um]=-0.02394831
17-03-18 00:05:38.338 -07 000000431 INF: Autofocus finished
17-03-18 00:05:38.538 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:05:38.538 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:05:38.538 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.133743531175274. ----------
17-03-18 00:05:38.538 -07 000000610 INF: Cycle	81	Tile	18	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:05:38.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27724, sync = True, waitForSettling = True)
17-03-18 00:05:38.548 -07 000000610 INF: Z Motor: Moving to -0.126912 mm, started at -0.133744 mm, distance = 6.83 um
17-03-18 00:05:38.548 -07 000000610 INF: FPGA: Xmit ZDACW 27724\n [Z Motor]
17-03-18 00:05:38.548 -07 000000586 INF: FPGA: Recv ZDACW
17-03-18 00:05:38.558 -07 000000610 INF: FPGA: 'ZDACW 27724' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 00:05:38.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:38.558 -07 000000476 INF: FPGA: Recv ZDACR 27724
17-03-18 00:05:38.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:38.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:05:38.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:38.718 -07 000000586 INF: FPGA: Recv ZSGSRD 29049
17-03-18 00:05:38.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:38.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:38.728 -07 000000576 INF: FPGA: Recv ZSGSRD 29044
17-03-18 00:05:38.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:38.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:38.738 -07 000000476 INF: FPGA: Recv ZSGSRD 29047
17-03-18 00:05:38.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:38.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:38.748 -07 000000576 INF: FPGA: Recv ZSGSRD 29046
17-03-18 00:05:38.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:38.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:38.758 -07 000000547 INF: FPGA: Recv ZSGSRD 29046
17-03-18 00:05:38.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:38.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:38.768 -07 000000576 INF: FPGA: Recv ZSGSRD 29044
17-03-18 00:05:38.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:38.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:38.778 -07 000000547 INF: FPGA: Recv ZSGSRD 29046
17-03-18 00:05:38.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:38.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:38.788 -07 000000576 INF: FPGA: Recv ZSGSRD 29042
17-03-18 00:05:38.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:38.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:38.798 -07 000000476 INF: FPGA: Recv ZSGSRD 29046
17-03-18 00:05:38.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:38.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:38.808 -07 000000501 INF: FPGA: Recv ZSGSRD 29046
17-03-18 00:05:38.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:38.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:38.818 -07 000000476 INF: FPGA: Recv ZPIEZORD 24404
17-03-18 00:05:38.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:38.828 -07 000000610 INF: Z Motor: Piezo is near 32.1 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.230 V. Piezo Error = -10.2 V.
17-03-18 00:05:38.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29046 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29046 (-126.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29042 (-126.1 uncal um), Max = 29049 (-126.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 00:05:38.828 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29046, posNoise = 3, negNoise = 4
17-03-18 00:05:38.828 -07 000000610 INF: Z Motor: After move to -0.126912, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:38.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 00:05:38.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:38.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:38.828 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:38.828 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:05:38.828 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:05:38.828 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:05:38.828 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:38.828 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:38.828 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 00:05:38.828 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:05:38.828 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 00:05:38.828 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:05:38.838 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:05:38.838 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:05:38.838 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:05:38.838 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:05:38.848 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:05:38.848 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:05:38.848 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 00:05:38.848 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:05:38.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 27900 150\n [Camera]
17-03-18 00:05:39.048 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:05:40.088 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:05:40.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:05:40.088 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:40.098 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:05:40.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:05:40.098 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:40.098 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:40.098 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 00:05:40.098 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:40.098 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 00:05:40.288 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27900 1422
17-03-18 00:05:40.428 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:05:40.498 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 00:05:40.498 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 00:05:40.498 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:40.498 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 00:05:40.498 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 00:05:40.498 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:40.498 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:40.498 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 00:05:40.508 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:40.508 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 00:05:40.938 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:05:40.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:05:40.938 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:41.038 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:05:41.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:05:41.038 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:41.048 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:41.048 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:41.048 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 00:05:41.048 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 00:05:41.128 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:05:41.128 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:05:41.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 27900 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall
17-03-18 00:05:41.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 00:05:41.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.126921017880724. ------
17-03-18 00:05:41.128 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:41.128 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13289 mm
17-03-18 00:05:41.128 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 00:05:41.128 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 00:05:41.128 -07 000000576 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 00:05:41.128 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29030, sync = True, waitForSettling = False)
17-03-18 00:05:41.128 -07 000000478 INF: Z Motor: Moving to -0.132891 mm, started at -0.126921 mm, distance = -5.97 um
17-03-18 00:05:41.138 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:41.138 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:41.138 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:05:41.138 -07 000000586 INF: FPGA: Recv YRDPOS 151570
17-03-18 00:05:41.148 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 00:05:41.148 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:41.148 -07 000000576 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:41.148 -07 000000576 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 00:05:41.148 -07 000000576 INF: Y Motor: Moving 1350 steps-29
17-03-18 00:05:41.158 -07 000000478 INF: FPGA: Xmit ZDACW 29030\n [Z Motor]
17-03-18 00:05:41.158 -07 000000482 INF: FPGA: Recv ZDACW
17-03-18 00:05:41.168 -07 000000478 INF: FPGA: 'ZDACW 29030' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 00:05:41.168 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 00:05:41.178 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:41.178 -07 000000482 INF: FPGA: Recv ZDACR 29030
17-03-18 00:05:41.188 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 00:05:41.188 -07 000000478 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 00:05:41.348 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-18 00:05:41.348 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 00:05:41.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 00:05:41.448 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 00:05:41.448 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:41.448 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 00:05:41.448 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 00:05:41.448 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:41.448 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:41.458 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:41.458 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 00:05:41.458 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 00:05:41.538 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-18 00:05:41.538 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 00:05:41.568 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:41.568 -07 000000448 INF: FPGA: Recv YRDPOS 153255
17-03-18 00:05:41.578 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 00:05:41.578 -07 000000576 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:41.578 -07 000000576 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 00:05:41.578 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.154 mm/sec
17-03-18 00:05:42.008 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.005817,
17-03-18 00:05:42.128 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 00:05:42.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 80. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1296, R2=1347, Total=2643. Warn if over 250 bubbles per interval.
17-03-18 00:05:42.528 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 00:05:42.528 -07 000000482 INF: FPGA: Recv YRDPOS 153256
17-03-18 00:05:42.538 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 00:05:42.538 -07 000000576 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 00:05:42.548 -07 000000576 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 00:05:42.548 -07 000000576 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 00:05:42.548 -07 000000576 INF: Y Motor: Moved to 74.8320 after 1418 ms (table move)
17-03-18 00:05:42.558 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132891 mm (DAC = 29030)
17-03-18 00:05:42.558 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:42.558 -07 000000618 INF: FPGA: Recv ZSGSRD 29981
17-03-18 00:05:42.568 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 00:05:42.568 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:42.568 -07 000000576 INF: FPGA: Recv ZSGSRD 29973
17-03-18 00:05:42.578 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:42.578 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:42.578 -07 000000618 INF: FPGA: Recv ZSGSRD 29978
17-03-18 00:05:42.588 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:42.588 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:42.588 -07 000000501 INF: FPGA: Recv ZSGSRD 29975
17-03-18 00:05:42.598 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:42.598 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:42.598 -07 000000576 INF: FPGA: Recv ZSGSRD 29978
17-03-18 00:05:42.608 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:42.608 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:42.608 -07 000000448 INF: FPGA: Recv ZSGSRD 29979
17-03-18 00:05:42.618 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:42.618 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:42.618 -07 000000448 INF: FPGA: Recv ZSGSRD 29982
17-03-18 00:05:42.628 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:42.628 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:42.628 -07 000000448 INF: FPGA: Recv ZSGSRD 29979
17-03-18 00:05:42.638 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:42.638 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:42.638 -07 000000448 INF: FPGA: Recv ZSGSRD 29979
17-03-18 00:05:42.648 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:42.648 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:42.648 -07 000000448 INF: FPGA: Recv ZSGSRD 29973
17-03-18 00:05:42.658 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:42.658 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:42.658 -07 000000501 INF: FPGA: Recv ZPIEZORD 25708
17-03-18 00:05:42.668 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:42.668 -07 000000547 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.430 V. Piezo Error = -9.4 V.
17-03-18 00:05:42.668 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29978 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29978 (-132.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29973 (-132.1 uncal um), Max = 29982 (-132.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 00:05:42.668 -07 000000547 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29978, posNoise = 4, negNoise = 5
17-03-18 00:05:42.668 -07 000000547 INF: Z Motor: After move to -0.132891, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:42.668 -07 000000547 INF: Z Motor: Settle wait time = 1422 ms, measure time = 108 ms (allowed 150 ms), total time = 1530 ms
17-03-18 00:05:42.668 -07 000000547 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 00:05:42.718 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-18 00:05:42.718 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 00:05:42.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:42.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:42.718 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:42.718 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:42.718 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 00:05:42.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:42.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 00:05:42.718 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 00:05:42.728 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 00:05:42.728 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 00:05:42.738 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 00:05:42.738 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 00:05:42.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 00:05:42.788 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 00:05:43.088 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 00:05:43.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 00:05:43.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 00:05:43.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-18 00:05:43.128 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 00:05:43.128 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 00:05:43.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 00:05:43.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 00:05:43.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:43.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 00:05:43.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 00:05:43.328 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 00:05:43.328 -07 000000586 INF: Autofocus start
17-03-18 00:05:43.328 -07 000000586 INF: MeasureProfile start
17-03-18 00:05:43.328 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-18 00:05:43.338 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 00:05:43.338 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 00:05:43.338 -07 000000586 INF: MeasureProfile done
17-03-18 00:05:43.338 -07 000000586 INF: X=0  Z correction [um]=-0.02394831
17-03-18 00:05:43.338 -07 000000586 INF: Autofocus finished
17-03-18 00:05:43.538 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-18 00:05:43.538 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 00:05:43.538 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.132908383596845. ----------
17-03-18 00:05:43.538 -07 000000610 INF: Cycle	81	Tile	19	Exposure Settings		A	1037	G	500	T	500	C	1037
17-03-18 00:05:43.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27537, sync = True, waitForSettling = True)
17-03-18 00:05:43.548 -07 000000610 INF: Z Motor: Moving to -0.126056 mm, started at -0.132908 mm, distance = 6.85 um
17-03-18 00:05:43.548 -07 000000610 INF: FPGA: Xmit ZDACW 27537\n [Z Motor]
17-03-18 00:05:43.548 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 00:05:43.558 -07 000000610 INF: FPGA: 'ZDACW 27537' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:43.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 00:05:43.558 -07 000000618 INF: FPGA: Recv ZDACR 27537
17-03-18 00:05:43.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:43.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 00:05:43.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:43.718 -07 000000576 INF: FPGA: Recv ZSGSRD 28911
17-03-18 00:05:43.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:43.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:43.728 -07 000000618 INF: FPGA: Recv ZSGSRD 28915
17-03-18 00:05:43.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:43.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:43.738 -07 000000576 INF: FPGA: Recv ZSGSRD 28913
17-03-18 00:05:43.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:43.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:43.748 -07 000000429 INF: FPGA: Recv ZSGSRD 28917
17-03-18 00:05:43.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:43.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:43.758 -07 000000618 INF: FPGA: Recv ZSGSRD 28907
17-03-18 00:05:43.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:43.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:43.768 -07 000000501 INF: FPGA: Recv ZSGSRD 28916
17-03-18 00:05:43.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:43.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:43.778 -07 000000458 INF: FPGA: Recv ZSGSRD 28907
17-03-18 00:05:43.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:43.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:43.788 -07 000000618 INF: FPGA: Recv ZSGSRD 28913
17-03-18 00:05:43.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:43.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:43.798 -07 000000478 INF: FPGA: Recv ZSGSRD 28918
17-03-18 00:05:43.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:43.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 00:05:43.808 -07 000000618 INF: FPGA: Recv ZSGSRD 28913
17-03-18 00:05:43.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:43.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 00:05:43.818 -07 000000501 INF: FPGA: Recv ZPIEZORD 24292
17-03-18 00:05:43.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 00:05:43.828 -07 000000610 INF: Z Motor: Piezo is near 31.9 V (nominally 0 to 100 V), expect near 42.0 V, since DAC is at 4.202 V. Piezo Error = -10.1 V.
17-03-18 00:05:43.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.1 um, Read 10 ADC samples: Avg = 28913 (-125.3 uncal um), Error = 0.8 uncal um, Median = 28913 (-125.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 28907 (-125.3 uncal um), Max = 28918 (-125.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 00:05:43.828 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28913, posNoise = 5, negNoise = 6
17-03-18 00:05:43.828 -07 000000610 INF: Z Motor: After move to -0.126056, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 00:05:43.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 00:05:43.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 00:05:43.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 00:05:43.828 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 00:05:43.828 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 00:05:43.828 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 00:05:43.828 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 00:05:43.828 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 00:05:43.828 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 00:05:43.828 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 00:05:43.828 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 00:05:43.828 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 00:05:43.828 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 00:05:43.838 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 00:05:43.838 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 00:05:43.838 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 00:05:43.838 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 00:05:43.848 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 00:05:43.848 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 00:05:43.848 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 00:05:43.848 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 00:05:43.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 27714 150\n [Camera]
17-03-18 00:05:44.058 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 00:05:45.088 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229
17-03-18 00:05:45.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229
17-03-18 00:05:45.088 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:45.098 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229
17-03-18 00:05:45.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229
17-03-18 00:05:45.098 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:45.098 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:45.098 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 00:05:45.098 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:45.098 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 00:05:45.288 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27714 1422
17-03-18 00:05:45.438 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572
17-03-18 00:05:45.488 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 00:05:45.488 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 00:05:45.488 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:45.498 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:45.498 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 00:05:45.498 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 00:05:45.498 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 00:05:45.498 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:45.498 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 00:05:45.508 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 00:05:45.938 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072
17-03-18 00:05:45.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072
17-03-18 00:05:45.938 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 00:05:46.038 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072
17-03-18 00:05:46.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072
17-03-18 00:05:46.038 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 00:05:46.048 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 00:05:46.048 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 00:05:46.048 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 00:05:46.048 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 00:05:46.128 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 2265
17-03-18 00:05:46.128 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 00:05:46.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 27714 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall
17-03-18 00:05:46.448 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 00:05:46.448 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 00:05:46.448 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:46.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 00:05:46.448 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 00:05:46.448 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-18 00:05:46.458 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:46.458 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 00:05:46.458 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 00:05:46.458 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 00:05:46.458 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 422 ms.
17-03-18 00:05:46.498 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 00:05:46.498 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 00:05:46.538 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 00:05:46.558 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 00:05:46.558 -07 000000610 INF: Imaging Cycle 81: ScanTilesCommand Cycle 81 time end. Duration was 206352 ms.
17-03-18 00:05:46.558 -07 000000610 INF: =================== Cycle #81 ===================
17-03-18 00:05:46.558 -07 000000610 INF: ===================  ===================
17-03-18 00:05:46.558 -07 000000547 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 00:05:46.568 -07 000000476 INF: FPGA: Recv EXLED1ADCR 25
17-03-18 00:05:46.568 -07 000000547 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 00:05:46.568 -07 000000547 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-18 00:05:46.568 -07 000000547 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 81, FrontChillerTemperature: 4.005817, FrontChillerHeatSinkTemperature: 0.435358, AmbientTemperature: 18.5696, FlowCellCompartmentTemperature: 22.00997, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.12052, GreenLEDSensorTemperature: 30.21085, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-18 00:05:46.618 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.