17-03-18 01:01:40.998 -07 000000610 INF: =================== Cycle #83 ===================
17-03-18 01:01:40.998 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 01:01:40.998 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 75.3770 mm, delta = 0.0036 mm
17-03-18 01:01:40.998 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:01:40.998 -07 000000591 INF: FPGA: Recv YRDPOS 154372
17-03-18 01:01:41.008 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:01:41.008 -07 000000610 INF: Y Motor: Encoder = 154372 = motor step 120603.1 = 75.3770 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:01:41.008 -07 000000610 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = 0.0000 mm (0.0 steps). UsingTableMove = False
17-03-18 01:01:41.008 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 01:01:41.008 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 01:01:41.038 -07 000000455 INF: FPGA: Recv YMVTO 154380 11
17-03-18 01:01:41.038 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 27 ms to get response, and 37 ms overall
17-03-18 01:01:41.038 -07 000000610 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 01:01:41.038 -07 000000610 INF: Y Motor: To move from 75.377 to 75.381 (0.004 mm) should take 5 steps, but required 11 steps (0.007 mm). Slippage = 0.004 mm (1.03%).
17-03-18 01:01:41.038 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 37 ms, distance = 0.004 mm, average velocity = 0.098 mm/sec
17-03-18 01:01:42.218 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:01:42.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:01:43.478 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.019446,
17-03-18 01:01:44.038 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:01:44.038 -07 000000455 INF: FPGA: Recv YRDPOS 154385
17-03-18 01:01:44.048 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:01:44.048 -07 000000610 INF: Y Motor: Encoder = 154385 = motor step 120613.3 = 75.3833 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:01:44.048 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.002721, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 01:01:44.048 -07 000000610 INF: Y Motor: Position error after settling = 6 encoder counts (0.003 mm), Delta during settling = 5 counts (0.002 mm)
17-03-18 01:01:44.048 -07 000000610 INF: Y Motor: Moved to 75.3833 after 3049 ms
17-03-18 01:01:44.048 -07 000000610 INF: =================== Cycle #83, Flow Cell Temp 60° ===================
17-03-18 01:01:44.048 -07 000000610 INF: =================== Cycle #83, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 01:01:44.048 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 01:01:44.058 -07 000000455 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:01:44.068 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:01:44.068 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:01:44.068 -07 000000455 INF: FPGA: Recv TEC2EN 
17-03-18 01:01:44.078 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:01:44.078 -07 000000610 INF: =================== Cycle #83, Flow Cell Temp 60° ===================
17-03-18 01:01:44.078 -07 000000610 INF: =================== Cycle #83 ===================
17-03-18 01:01:44.078 -07 000000610 INF: =================== Cycle #83, Pumping Reagent PR2 (3) ===================
17-03-18 01:01:44.078 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:01:44.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:01:44.118 -07 000000610 INF: LanePump: Recv /0`1170(0x03)\r\n
17-03-18 01:01:44.118 -07 000000610 INF: LanePump: Current Position of Pump is: 1170
17-03-18 01:01:44.118 -07 000000610 INF: =================== Cycle #83, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:01:44.248 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:01:44.288 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:01:47.218 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:01:47.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:01:47.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:01:47.448 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:01:47.868 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:01:47.898 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:01:48.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:01:48.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:01:48.348 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:01:48.348 -07 000000610 INF: =================== Cycle #83, Pumping Reagent PR2 (3) ===================
17-03-18 01:01:48.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:01:48.508 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:01:48.508 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:01:48.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:01:48.668 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:01:48.668 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:01:48.668 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:01:48.798 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:01:48.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:01:48.838 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.011254,
17-03-18 01:01:49.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:01:49.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:01:49.288 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:01:49.288 -07 000000610 INF: =================== Cycle #83 ===================
17-03-18 01:01:50.508 -07 000000610 INF: AsyncDelayTimer waited 1202ms
17-03-18 01:01:50.508 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 01:01:50.508 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:01:50.528 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:01:50.528 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 01:01:50.528 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 01:01:50.738 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:01:50.758 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 01:01:50.758 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 01:01:50.808 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:01:50.828 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:01:50.828 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:01:50.928 -07 000000610 INF: =================== Cycle #83, Pumping Reagent IMT (1) ===================
17-03-18 01:01:50.928 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:01:50.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:01:50.958 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:01:50.958 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:01:50.958 -07 000000610 INF: =================== Cycle #83, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 01:01:51.088 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:01:51.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:01:52.218 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:01:52.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:01:52.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:01:52.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:01:53.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:01:53.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:01:53.188 -07 000000610 INF: LanePump: Waited 2059 ms for pump motion to complete
17-03-18 01:01:53.188 -07 000000610 INF: =================== Cycle #83, Pumping Reagent IMT (1) ===================
17-03-18 01:01:53.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:01:53.348 -07 000000610 INF: LanePump: Recv /0`2160(0x03)\r\n
17-03-18 01:01:53.348 -07 000000610 INF: LanePump: Current Position of Pump is: 2160
17-03-18 01:01:53.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:01:53.508 -07 000000610 INF: LanePump: Recv /0`2160(0x03)\r\n
17-03-18 01:01:53.508 -07 000000610 INF: LanePump: Current Position of Pump is: 2160
17-03-18 01:01:53.508 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:01:53.638 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:01:53.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:01:54.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:01:54.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:01:54.128 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:01:54.128 -07 000000610 INF: =================== Cycle #83 ===================
17-03-18 01:01:54.198 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.02213,
17-03-18 01:01:55.348 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 01:01:55.348 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:01:55.348 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:01:55.368 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:01:55.368 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 01:01:55.368 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:01:55.598 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:01:55.618 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 01:01:55.618 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 01:01:55.668 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:01:55.688 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:01:55.688 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:01:55.788 -07 000000610 INF: =================== Cycle #83, Pumping Reagent PR2 (3) ===================
17-03-18 01:01:55.788 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:01:55.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:01:55.828 -07 000000610 INF: LanePump: Recv /0`2160(0x03)\r\n
17-03-18 01:01:55.828 -07 000000610 INF: LanePump: Current Position of Pump is: 2160
17-03-18 01:01:55.828 -07 000000610 INF: =================== Cycle #83, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:01:55.958 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:01:55.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:01:56.868 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:01:56.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:01:56.898 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:01:56.898 -07 000000610 INF: =================== Cycle #83, Pumping Reagent PR2 (3) ===================
17-03-18 01:01:57.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:01:57.058 -07 000000610 INF: LanePump: Recv /0`2280(0x03)\r\n
17-03-18 01:01:57.058 -07 000000610 INF: LanePump: Current Position of Pump is: 2280
17-03-18 01:01:57.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:01:57.218 -07 000000610 INF: LanePump: Recv /0`2280(0x03)\r\n
17-03-18 01:01:57.218 -07 000000610 INF: LanePump: Current Position of Pump is: 2280
17-03-18 01:01:57.218 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:01:57.218 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:01:57.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:01:57.348 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:01:57.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:01:57.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:01:57.838 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:01:57.838 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:01:57.838 -07 000000610 INF: =================== Cycle #83 ===================
17-03-18 01:01:57.838 -07 000000610 INF: =================== Cycle #83, Flow Cell Temp 65° ===================
17-03-18 01:01:57.838 -07 000000610 INF: =================== Cycle #83, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 01:01:57.838 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 01:01:57.848 -07 000000576 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:01:57.848 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:01:57.848 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:01:57.848 -07 000000591 INF: FPGA: Recv TEC2EN 
17-03-18 01:01:57.858 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:01:57.858 -07 000000610 INF: =================== Cycle #83, Flow Cell Temp 65° ===================
17-03-18 01:01:57.858 -07 000000610 INF: =================== Cycle #83 ===================
17-03-18 01:01:57.858 -07 000000610 INF: WaitCommand(30000) start
17-03-18 01:01:59.558 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.012614,
17-03-18 01:02:02.218 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:02:02.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:02:04.918 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.018051,
17-03-18 01:02:07.228 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:02:07.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:02:11.288 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.990831,
17-03-18 01:02:12.218 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:02:12.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:02:16.648 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.98264,
17-03-18 01:02:17.218 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:02:17.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:02:22.008 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.997626,
17-03-18 01:02:22.218 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:02:22.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:02:27.218 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:02:27.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:02:27.368 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.988112,
17-03-18 01:02:27.868 -07 000000610 INF: WaitCommand(30000) end
17-03-18 01:02:27.868 -07 000000610 INF: =================== Cycle #83, Pumping Reagent PR2 (3) ===================
17-03-18 01:02:27.868 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 01:02:27.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:02:27.998 -07 000000610 INF: LanePump: Recv /0`2280(0x03)\r\n
17-03-18 01:02:27.998 -07 000000610 INF: LanePump: Current Position of Pump is: 2280
17-03-18 01:02:27.998 -07 000000610 INF: =================== Cycle #83, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:02:28.128 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 01:02:28.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:02:28.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:02:28.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:02:28.738 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 01:02:28.738 -07 000000610 INF: =================== Cycle #83, Pumping Reagent PR2 (3) ===================
17-03-18 01:02:28.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:02:28.898 -07 000000610 INF: LanePump: Recv /0`2310(0x03)\r\n
17-03-18 01:02:28.898 -07 000000610 INF: LanePump: Current Position of Pump is: 2310
17-03-18 01:02:29.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:02:29.058 -07 000000610 INF: LanePump: Recv /0`2310(0x03)\r\n
17-03-18 01:02:29.058 -07 000000610 INF: LanePump: Current Position of Pump is: 2310
17-03-18 01:02:29.058 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:02:29.188 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:02:29.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:02:29.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:02:29.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:02:29.678 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:02:29.678 -07 000000610 INF: =================== Cycle #83 ===================
17-03-18 01:02:29.678 -07 000000455 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:02:29.678 -07 000000591 INF: WaitCommand(30000) start
17-03-18 01:02:29.678 -07 000000455 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:02:30.898 -07 000000455 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:02:30.898 -07 000000455 INF: LanePump: Xmit /1?\r
17-03-18 01:02:30.928 -07 000000455 INF: LanePump: Recv /0`2310(0x03)\r\n
17-03-18 01:02:30.928 -07 000000455 INF: LanePump: Current Position of Pump is: 2310
17-03-18 01:02:31.058 -07 000000455 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:02:31.098 -07 000000455 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:02:32.218 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:02:32.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:02:32.728 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.023489,
17-03-18 01:02:33.828 -07 000000455 INF: LanePump: Xmit /1Q\r
17-03-18 01:02:33.858 -07 000000455 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:02:34.278 -07 000000455 INF: LanePump: Xmit /1Q\r
17-03-18 01:02:34.308 -07 000000455 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:02:34.728 -07 000000455 INF: LanePump: Xmit /1Q\r
17-03-18 01:02:34.758 -07 000000455 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:02:34.758 -07 000000455 INF: LanePump: Waited 3659 ms for pump motion to complete
17-03-18 01:02:34.758 -07 000000455 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:02:34.758 -07 000000455 INF: ===================  ===================
17-03-18 01:02:37.218 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:02:37.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:02:38.088 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.012614,
17-03-18 01:02:42.218 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:02:42.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:02:43.448 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.983999,
17-03-18 01:02:47.218 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:02:47.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:02:48.808 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.008536,
17-03-18 01:02:52.218 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:02:52.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:02:54.168 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.008536,
17-03-18 01:02:57.218 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:02:57.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:02:59.528 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.038479,
17-03-18 01:02:59.688 -07 000000591 INF: WaitCommand(30000) end
17-03-18 01:02:59.688 -07 000000610 INF: =================== Cycle #83, Flow Cell Temp 22° ===================
17-03-18 01:02:59.688 -07 000000610 INF: =================== Cycle #83, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 01:02:59.688 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 01:02:59.688 -07 000000581 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:02:59.698 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:02:59.698 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:02:59.698 -07 000000591 INF: FPGA: Recv TEC2EN 
17-03-18 01:02:59.708 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:02:59.708 -07 000000610 INF: =================== Cycle #83, Flow Cell Temp 22° ===================
17-03-18 01:02:59.708 -07 000000610 INF: =================== Cycle #83 ===================
17-03-18 01:02:59.708 -07 000000610 INF: WaitCommand(60000) start
17-03-18 01:03:02.218 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:03:02.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:03:04.888 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.020806,
17-03-18 01:03:07.218 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:03:07.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:03:10.248 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.011254,
17-03-18 01:03:12.218 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:03:12.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:03:15.608 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.003063,
17-03-18 01:03:17.218 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:03:17.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:03:20.968 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.001704,
17-03-18 01:03:22.218 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:03:22.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:03:26.328 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.0344,
17-03-18 01:03:27.218 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:03:27.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:03:31.688 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.018051,
17-03-18 01:03:32.218 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:03:32.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:03:37.048 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.981281,
17-03-18 01:03:37.218 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:03:37.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:03:42.218 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:03:42.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:03:42.408 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.969015,
17-03-18 01:03:47.218 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:03:47.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:03:47.768 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.932187,
17-03-18 01:03:52.218 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:03:52.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:03:53.128 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.962185,
17-03-18 01:03:57.228 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:03:57.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:03:58.488 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.964938,
17-03-18 01:03:59.718 -07 000000610 INF: WaitCommand(60000) end
17-03-18 01:03:59.718 -07 000000610 INF: =================== Cycle #83, Pumping Reagent PR2 (3) ===================
17-03-18 01:03:59.718 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:03:59.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:03:59.748 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:03:59.748 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:03:59.748 -07 000000610 INF: =================== Cycle #83, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:03:59.878 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:03:59.918 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:04:02.228 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:04:02.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:04:03.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:04:03.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:04:03.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:04:03.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:04:03.848 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.985358,
17-03-18 01:04:03.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:04:03.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:04:03.978 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:04:03.978 -07 000000610 INF: =================== Cycle #83, Pumping Reagent PR2 (3) ===================
17-03-18 01:04:04.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:04:04.138 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:04:04.138 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:04:04.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:04:04.298 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:04:04.298 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:04:04.298 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:04:04.428 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:04:04.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:04:04.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:04:04.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:04:04.918 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:04:04.918 -07 000000610 INF: =================== Cycle #83 ===================
17-03-18 01:04:06.138 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:04:06.138 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 01:04:06.138 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:04:06.158 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:04:06.158 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 01:04:06.158 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 01:04:06.308 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:04:06.328 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:04:06.328 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:04:06.378 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:04:06.398 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:04:06.398 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:04:06.498 -07 000000610 INF: =================== Cycle #83, Pumping Reagent USM (2) ===================
17-03-18 01:04:06.498 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:04:06.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:04:06.528 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:04:06.528 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:04:06.528 -07 000000610 INF: =================== Cycle #83, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 01:04:06.658 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:04:06.698 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:04:07.228 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:04:07.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:04:08.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:04:08.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:04:08.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:04:08.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:04:08.618 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:04:08.618 -07 000000610 INF: =================== Cycle #83, Pumping Reagent USM (2) ===================
17-03-18 01:04:08.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:04:08.778 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:04:08.778 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:04:08.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:04:08.938 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:04:08.938 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:04:08.938 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:04:09.068 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:04:09.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:04:09.208 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.994908,
17-03-18 01:04:09.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:04:09.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:04:09.558 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:04:09.558 -07 000000610 INF: =================== Cycle #83 ===================
17-03-18 01:04:10.778 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:04:10.778 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:04:10.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:04:10.798 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:04:10.798 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 01:04:10.798 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:04:10.948 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:04:10.968 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:04:10.968 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:04:11.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:04:11.038 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:04:11.038 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:04:11.138 -07 000000610 INF: =================== Cycle #83, Pumping Reagent PR2 (3) ===================
17-03-18 01:04:11.138 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:04:11.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:04:11.168 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:04:11.168 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:04:11.168 -07 000000610 INF: =================== Cycle #83, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:04:11.298 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:04:11.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:04:12.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:04:12.228 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:04:12.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:04:12.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:04:12.238 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:04:12.238 -07 000000610 INF: =================== Cycle #83, Pumping Reagent PR2 (3) ===================
17-03-18 01:04:12.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:04:12.398 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:04:12.398 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:04:12.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:04:12.558 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:04:12.558 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:04:12.558 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:04:12.688 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:04:12.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:04:13.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:04:13.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:04:13.178 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:04:13.178 -07 000000610 INF: =================== Cycle #83 ===================
17-03-18 01:04:13.178 -07 000000474 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:04:13.178 -07 000000455 INF: WaitCommand(10000) start
17-03-18 01:04:13.178 -07 000000474 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:04:14.398 -07 000000474 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:04:14.398 -07 000000474 INF: LanePump: Xmit /1?\r
17-03-18 01:04:14.428 -07 000000474 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:04:14.428 -07 000000474 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:04:14.558 -07 000000474 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:04:14.568 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.026244,
17-03-18 01:04:14.598 -07 000000474 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:04:16.128 -07 000000474 INF: LanePump: Xmit /1Q\r
17-03-18 01:04:16.728 -07 000000474 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:04:17.148 -07 000000474 INF: LanePump: Xmit /1Q\r
17-03-18 01:04:17.178 -07 000000474 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:04:17.178 -07 000000474 INF: LanePump: Waited 2579 ms for pump motion to complete
17-03-18 01:04:17.178 -07 000000474 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:04:17.178 -07 000000474 INF: ===================  ===================
17-03-18 01:04:17.228 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:04:17.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:04:19.928 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.024884,
17-03-18 01:04:22.228 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:04:22.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:04:23.188 -07 000000455 INF: WaitCommand(10000) end
17-03-18 01:04:23.188 -07 000000610 INF: =================== Cycle #83, Imaging ===================
17-03-18 01:04:23.188 -07 000000610 INF: Imaging Cycle 83: ScanTilesCommand Cycle 83 time start.
17-03-18 01:04:23.188 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 01:04:23.188 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:04:23.218 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:04:23.218 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 01:04:23.218 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 01:04:23.518 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:04:23.538 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:04:23.538 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:04:23.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:04:23.608 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:04:23.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:23.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:23.608 -07 000000474 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 01:04:23.608 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:23.608 -07 000000474 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 01:04:23.608 -07 000000591 INF: FPGA: Recv EXLED1ON 
17-03-18 01:04:23.618 -07 000000474 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:04:23.618 -07 000000474 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 01:04:23.618 -07 000000591 INF: FPGA: Recv EXLED1ADCR 23200
17-03-18 01:04:23.628 -07 000000474 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:23.628 -07 000000474 INF: RedLED: Using Red data: Photodiode ADC 23200 --> 7.4 mW (old method), or 205.6 mW (new method). Difference = 198.2 mW
17-03-18 01:04:23.628 -07 000000474 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 01:04:23.628 -07 000000581 INF: FPGA: Recv EXLED1OFF 
17-03-18 01:04:23.638 -07 000000474 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:23.638 -07 000000474 INF: RedLED: LED was on for 20 ms
17-03-18 01:04:23.638 -07 000000474 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-18 01:04:23.638 -07 000000474 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 01:04:23.638 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:23.638 -07 000000474 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 01:04:23.638 -07 000000455 INF: FPGA: Recv EXLED2ON 
17-03-18 01:04:23.648 -07 000000474 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:04:23.648 -07 000000474 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:04:23.648 -07 000000581 INF: FPGA: Recv EXLED1ADCR 2104
17-03-18 01:04:23.658 -07 000000474 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:23.658 -07 000000474 INF: GreenLED: Using Green data: Photodiode ADC 2104 --> 0.9 mW (old method), or 182.8 mW (new method). Difference = 181.9 mW
17-03-18 01:04:23.658 -07 000000474 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 01:04:23.658 -07 000000455 INF: FPGA: Recv EXLED2OFF 
17-03-18 01:04:23.668 -07 000000474 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:23.668 -07 000000474 INF: GreenLED: LED was on for 20 ms
17-03-18 01:04:23.668 -07 000000474 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 01:04:23.668 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:04:23.668 -07 000000592 INF: FPGA: Recv EMCUR 
17-03-18 01:04:23.678 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:04:23.678 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 01:04:24.178 -07 000000592 INF: FPGA: Recv EMOUT
17-03-18 01:04:24.178 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 01:04:24.178 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 01:04:24.178 -07 000000430 INF: FPGA: Recv EMCUR 
17-03-18 01:04:24.188 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:04:24.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:04:24.188 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:04:24.188 -07 000000610 INF: Y Motor: Moving to 59.9126 mm, started at 75.3833 mm, delta = -15.4707 mm
17-03-18 01:04:24.188 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:04:24.188 -07 000000461 INF: FPGA: Recv YRDPOS 154385
17-03-18 01:04:24.198 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:04:24.198 -07 000000610 INF: Y Motor: Encoder = 154385 = motor step 120613.3 = 75.3833 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:04:24.198 -07 000000610 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 01:04:24.198 -07 000000610 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:04:24.198 -07 000000610 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:04:25.288 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.028963,
17-03-18 01:04:25.878 -07 000000455 INF: FPGA: Recv YMVTO 122703 24781
17-03-18 01:04:25.878 -07 000000610 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1678 ms to get response, and 1687 ms overall
17-03-18 01:04:25.878 -07 000000610 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:04:25.878 -07 000000610 INF: Y Motor: To move from 75.383 to 59.913 (-15.471 mm) should take 24753 steps, but required 24781 steps (15.488 mm). Slippage = 0.018 mm (0.00%).
17-03-18 01:04:25.878 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1687 ms, distance = 15.471 mm, average velocity = 9.171 mm/sec
17-03-18 01:04:27.228 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:04:27.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:04:28.878 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:04:28.878 -07 000000576 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:04:28.888 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:28.888 -07 000000610 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:04:28.908 -07 000000610 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-18 01:04:28.908 -07 000000610 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 01:04:28.908 -07 000000610 INF: Y Motor: Moved to 59.9106 after 4723 ms
17-03-18 01:04:28.908 -07 000000610 INF: =================== Cycle #83, Imaging, Performing CoarseFocus. ===================
17-03-18 01:04:28.908 -07 000000610 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:04:28.918 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:04:28.918 -07 000000610 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:04:28.918 -07 000000610 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:04:29.118 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:04:29.118 -07 000000610 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:04:29.118 -07 000000610 INF: Scanning Z-Position: -0.212388
17-03-18 01:04:29.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 46396, sync = True, waitForSettling = True)
17-03-18 01:04:29.118 -07 000000610 INF: Z Motor: Moving to -0.212387 mm, started at -0.126298 mm, distance = -86.09 um
17-03-18 01:04:29.118 -07 000000610 INF: FPGA: Xmit ZDACW 46396\n [Z Motor]
17-03-18 01:04:29.128 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:04:29.128 -07 000000610 INF: FPGA: 'ZDACW 46396' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:04:29.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:29.128 -07 000000430 INF: FPGA: Recv ZDACR 46396
17-03-18 01:04:29.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:29.138 -07 000000610 INF: Z Motor: Waiting 500 ms for long move > 40 um
17-03-18 01:04:29.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:29.638 -07 000000455 INF: FPGA: Recv ZSGSRD 42350
17-03-18 01:04:29.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:29.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:29.648 -07 000000581 INF: FPGA: Recv ZSGSRD 42353
17-03-18 01:04:29.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:29.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:29.658 -07 000000592 INF: FPGA: Recv ZSGSRD 42354
17-03-18 01:04:29.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:29.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:29.668 -07 000000461 INF: FPGA: Recv ZSGSRD 42349
17-03-18 01:04:29.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:29.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:29.678 -07 000000591 INF: FPGA: Recv ZSGSRD 42349
17-03-18 01:04:29.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:29.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:29.688 -07 000000430 INF: FPGA: Recv ZSGSRD 42350
17-03-18 01:04:29.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:29.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:29.698 -07 000000592 INF: FPGA: Recv ZSGSRD 42352
17-03-18 01:04:29.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:29.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:29.708 -07 000000430 INF: FPGA: Recv ZSGSRD 42353
17-03-18 01:04:29.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:29.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:29.718 -07 000000591 INF: FPGA: Recv ZSGSRD 42346
17-03-18 01:04:29.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:29.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:29.728 -07 000000581 INF: FPGA: Recv ZSGSRD 42352
17-03-18 01:04:29.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:29.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:29.738 -07 000000576 INF: FPGA: Recv ZPIEZORD 37977
17-03-18 01:04:29.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:29.748 -07 000000610 INF: Z Motor: Piezo is near 61.1 V (nominally 0 to 100 V), expect near 70.8 V, since DAC is at 7.080 V. Piezo Error = -9.7 V.
17-03-18 01:04:29.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -212.4 um, Read 10 ADC samples: Avg = 42351 (-211.4 uncal um), Error = 1.0 uncal um, Median = 42351 (-211.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 42346 (-211.4 uncal um), Max = 42354 (-211.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:04:29.748 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 42351, posNoise = 3, negNoise = 5
17-03-18 01:04:29.748 -07 000000610 INF: Z Motor: After move to -0.212387, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:29.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 623 ms)
17-03-18 01:04:29.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:29.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:29.748 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:29.748 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:29.748 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:29.748 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:29.748 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:29.748 -07 000000592 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:04:29.778 -07 000000592 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 01:04:29.778 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:29.778 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:04:29.778 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:29.788 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 01:04:29.788 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 41 ms.
17-03-18 01:04:29.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:29.988 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 193
17-03-18 01:04:30.288 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 493
17-03-18 01:04:30.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 493
17-03-18 01:04:30.288 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:30.288 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441468064, 0x0, 314322768) start.
17-03-18 01:04:30.478 -07 000000474 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:30.478 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:30.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 679 ms to get response, and 689 ms overall
17-03-18 01:04:30.648 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.008536,
17-03-18 01:04:30.878 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441468064, 0x0, 314322768) end. Duration was 586 ms.
17-03-18 01:04:30.878 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:30.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:04:30.888 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-18 01:04:30.978 -07 000000610 INF: Using center-column region for through-focus analysis: Row=512; Col=2048
17-03-18 01:04:31.088 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:31.108 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:31.118 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=45.28]
17-03-18 01:04:31.118 -07 000000610 INF: Scanning Z-Position: -0.210388
17-03-18 01:04:31.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 45959, sync = True, waitForSettling = True)
17-03-18 01:04:31.118 -07 000000610 INF: Z Motor: Moving to -0.210387 mm, started at -0.212395 mm, distance = 2.01 um
17-03-18 01:04:31.118 -07 000000610 INF: FPGA: Xmit ZDACW 45959\n [Z Motor]
17-03-18 01:04:31.118 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:04:31.128 -07 000000610 INF: FPGA: 'ZDACW 45959' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:04:31.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:31.128 -07 000000592 INF: FPGA: Recv ZDACR 45959
17-03-18 01:04:31.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:31.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:31.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:31.288 -07 000000591 INF: FPGA: Recv ZSGSRD 42041
17-03-18 01:04:31.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:31.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:31.298 -07 000000430 INF: FPGA: Recv ZSGSRD 42035
17-03-18 01:04:31.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:31.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:31.308 -07 000000576 INF: FPGA: Recv ZSGSRD 42040
17-03-18 01:04:31.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:31.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:31.318 -07 000000461 INF: FPGA: Recv ZSGSRD 42035
17-03-18 01:04:31.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:31.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:31.328 -07 000000592 INF: FPGA: Recv ZSGSRD 42040
17-03-18 01:04:31.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:31.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:31.338 -07 000000461 INF: FPGA: Recv ZSGSRD 42041
17-03-18 01:04:31.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:31.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:31.348 -07 000000474 INF: FPGA: Recv ZSGSRD 42038
17-03-18 01:04:31.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:31.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:31.358 -07 000000461 INF: FPGA: Recv ZSGSRD 42040
17-03-18 01:04:31.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:31.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:31.368 -07 000000581 INF: FPGA: Recv ZSGSRD 42029
17-03-18 01:04:31.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:31.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:31.378 -07 000000461 INF: FPGA: Recv ZSGSRD 42037
17-03-18 01:04:31.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:31.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:31.388 -07 000000581 INF: FPGA: Recv ZPIEZORD 37424
17-03-18 01:04:31.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:31.398 -07 000000610 INF: Z Motor: Piezo is near 59.9 V (nominally 0 to 100 V), expect near 70.1 V, since DAC is at 7.013 V. Piezo Error = -10.2 V.
17-03-18 01:04:31.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -210.4 um, Read 10 ADC samples: Avg = 42038 (-209.4 uncal um), Error = 1.0 uncal um, Median = 42039 (-209.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 42029 (-209.4 uncal um), Max = 42041 (-209.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:04:31.398 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 42038, posNoise = 3, negNoise = 9
17-03-18 01:04:31.398 -07 000000610 INF: Z Motor: After move to -0.210387, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:31.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:04:31.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:31.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:31.398 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:31.398 -07 000000591 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:31.398 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:31.398 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:31.398 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:31.398 -07 000000591 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:31.398 -07 000000591 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:04:31.398 -07 000000591 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:31.418 -07 000000591 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:04:31.418 -07 000000591 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:04:31.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:31.618 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:31.918 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:31.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:31.918 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:31.918 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-18 01:04:32.108 -07 000000430 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:32.108 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:32.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 682 ms to get response, and 689 ms overall
17-03-18 01:04:32.228 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:04:32.498 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:04:32.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:32.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:32.508 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-18 01:04:32.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:04:32.608 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:32.618 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:32.628 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=45.89]
17-03-18 01:04:32.628 -07 000000610 INF: Scanning Z-Position: -0.208388
17-03-18 01:04:32.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 45522, sync = True, waitForSettling = True)
17-03-18 01:04:32.628 -07 000000610 INF: Z Motor: Moving to -0.208386 mm, started at -0.210384 mm, distance = 2.00 um
17-03-18 01:04:32.628 -07 000000610 INF: FPGA: Xmit ZDACW 45522\n [Z Motor]
17-03-18 01:04:32.628 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:04:32.638 -07 000000610 INF: FPGA: 'ZDACW 45522' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:04:32.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:32.638 -07 000000591 INF: FPGA: Recv ZDACR 45522
17-03-18 01:04:32.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:32.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:32.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:32.798 -07 000000576 INF: FPGA: Recv ZSGSRD 41733
17-03-18 01:04:32.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:32.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:32.818 -07 000000581 INF: FPGA: Recv ZSGSRD 41723
17-03-18 01:04:32.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:04:32.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:32.828 -07 000000591 INF: FPGA: Recv ZSGSRD 41728
17-03-18 01:04:32.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:32.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:32.848 -07 000000581 INF: FPGA: Recv ZSGSRD 41734
17-03-18 01:04:32.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:04:32.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:32.858 -07 000000576 INF: FPGA: Recv ZSGSRD 41724
17-03-18 01:04:32.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:32.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:32.868 -07 000000430 INF: FPGA: Recv ZSGSRD 41728
17-03-18 01:04:32.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:32.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:32.878 -07 000000474 INF: FPGA: Recv ZSGSRD 41732
17-03-18 01:04:32.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:32.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:32.888 -07 000000592 INF: FPGA: Recv ZSGSRD 41728
17-03-18 01:04:32.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:32.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:32.898 -07 000000430 INF: FPGA: Recv ZSGSRD 41725
17-03-18 01:04:32.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:32.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:32.908 -07 000000474 INF: FPGA: Recv ZSGSRD 41729
17-03-18 01:04:32.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:32.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:32.918 -07 000000430 INF: FPGA: Recv ZPIEZORD 37014
17-03-18 01:04:32.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:32.928 -07 000000610 INF: Z Motor: Piezo is near 59.1 V (nominally 0 to 100 V), expect near 69.5 V, since DAC is at 6.946 V. Piezo Error = -10.4 V.
17-03-18 01:04:32.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -208.4 um, Read 10 ADC samples: Avg = 41728 (-207.4 uncal um), Error = 1.0 uncal um, Median = 41728 (-207.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 41723 (-207.4 uncal um), Max = 41734 (-207.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:04:32.928 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 41728, posNoise = 6, negNoise = 5
17-03-18 01:04:32.928 -07 000000610 INF: Z Motor: After move to -0.208386, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:32.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 302 ms)
17-03-18 01:04:32.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:32.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:32.928 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:32.928 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:32.928 -07 000000576 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:32.928 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:32.938 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:32.938 -07 000000576 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:32.938 -07 000000576 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:04:32.938 -07 000000576 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:32.948 -07 000000576 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:04:32.948 -07 000000576 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:04:32.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:33.148 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:33.448 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:33.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:33.448 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:33.458 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:04:33.638 -07 000000430 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:33.638 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:33.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 687 ms to get response, and 689 ms overall
17-03-18 01:04:34.038 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 583 ms.
17-03-18 01:04:34.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:34.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:34.038 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-18 01:04:34.238 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:34.248 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:34.258 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=46.33]
17-03-18 01:04:34.258 -07 000000610 INF: Scanning Z-Position: -0.206388
17-03-18 01:04:34.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 45085, sync = True, waitForSettling = True)
17-03-18 01:04:34.258 -07 000000610 INF: Z Motor: Moving to -0.206386 mm, started at -0.208393 mm, distance = 2.01 um
17-03-18 01:04:34.258 -07 000000610 INF: FPGA: Xmit ZDACW 45085\n [Z Motor]
17-03-18 01:04:34.258 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:04:34.268 -07 000000610 INF: FPGA: 'ZDACW 45085' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:04:34.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:34.268 -07 000000581 INF: FPGA: Recv ZDACR 45085
17-03-18 01:04:34.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:34.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:34.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:34.428 -07 000000576 INF: FPGA: Recv ZSGSRD 41410
17-03-18 01:04:34.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:34.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:34.438 -07 000000461 INF: FPGA: Recv ZSGSRD 41411
17-03-18 01:04:34.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:34.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:34.448 -07 000000576 INF: FPGA: Recv ZSGSRD 41416
17-03-18 01:04:34.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:34.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:34.458 -07 000000430 INF: FPGA: Recv ZSGSRD 41410
17-03-18 01:04:34.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:34.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:34.468 -07 000000461 INF: FPGA: Recv ZSGSRD 41413
17-03-18 01:04:34.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:34.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:34.478 -07 000000474 INF: FPGA: Recv ZSGSRD 41416
17-03-18 01:04:34.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:34.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:34.488 -07 000000461 INF: FPGA: Recv ZSGSRD 41414
17-03-18 01:04:34.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:34.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:34.498 -07 000000592 INF: FPGA: Recv ZSGSRD 41419
17-03-18 01:04:34.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:34.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:34.508 -07 000000576 INF: FPGA: Recv ZSGSRD 41411
17-03-18 01:04:34.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:34.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:34.518 -07 000000474 INF: FPGA: Recv ZSGSRD 41417
17-03-18 01:04:34.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:34.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:34.528 -07 000000474 INF: FPGA: Recv ZPIEZORD 36623
17-03-18 01:04:34.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:04:34.538 -07 000000610 INF: Z Motor: Piezo is near 58.2 V (nominally 0 to 100 V), expect near 68.8 V, since DAC is at 6.880 V. Piezo Error = -10.6 V.
17-03-18 01:04:34.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -206.4 um, Read 10 ADC samples: Avg = 41414 (-205.4 uncal um), Error = 1.0 uncal um, Median = 41414 (-205.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 41410 (-205.4 uncal um), Max = 41419 (-205.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:04:34.538 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 41414, posNoise = 5, negNoise = 4
17-03-18 01:04:34.538 -07 000000610 INF: Z Motor: After move to -0.206386, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:34.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:04:34.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:34.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:34.538 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:34.538 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:34.538 -07 000000461 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:34.538 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:34.538 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:34.538 -07 000000461 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:34.538 -07 000000461 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:04:34.538 -07 000000461 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:34.558 -07 000000461 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:04:34.558 -07 000000461 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:04:34.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:34.758 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:35.048 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:35.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:35.058 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:35.058 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start.
17-03-18 01:04:35.248 -07 000000592 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:35.248 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:35.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 682 ms to get response, and 689 ms overall
17-03-18 01:04:35.638 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 587 ms.
17-03-18 01:04:35.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:35.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:35.648 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-18 01:04:35.858 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:35.868 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:35.868 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=46.32]
17-03-18 01:04:35.868 -07 000000610 INF: Scanning Z-Position: -0.204388
17-03-18 01:04:35.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 44649, sync = True, waitForSettling = True)
17-03-18 01:04:35.878 -07 000000610 INF: Z Motor: Moving to -0.204390 mm, started at -0.206376 mm, distance = 1.99 um
17-03-18 01:04:35.878 -07 000000610 INF: FPGA: Xmit ZDACW 44649\n [Z Motor]
17-03-18 01:04:35.878 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:04:35.888 -07 000000610 INF: FPGA: 'ZDACW 44649' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:04:35.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:35.888 -07 000000474 INF: FPGA: Recv ZDACR 44649
17-03-18 01:04:35.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:35.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:36.008 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.008536,
17-03-18 01:04:36.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:36.048 -07 000000461 INF: FPGA: Recv ZSGSRD 41107
17-03-18 01:04:36.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:36.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:36.058 -07 000000592 INF: FPGA: Recv ZSGSRD 41106
17-03-18 01:04:36.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:36.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:36.068 -07 000000461 INF: FPGA: Recv ZSGSRD 41103
17-03-18 01:04:36.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:36.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:36.078 -07 000000592 INF: FPGA: Recv ZSGSRD 41107
17-03-18 01:04:36.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:36.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:36.088 -07 000000461 INF: FPGA: Recv ZSGSRD 41101
17-03-18 01:04:36.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:36.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:36.098 -07 000000430 INF: FPGA: Recv ZSGSRD 41099
17-03-18 01:04:36.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:36.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:36.108 -07 000000461 INF: FPGA: Recv ZSGSRD 41105
17-03-18 01:04:36.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:36.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:36.118 -07 000000581 INF: FPGA: Recv ZSGSRD 41108
17-03-18 01:04:36.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:36.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:36.128 -07 000000461 INF: FPGA: Recv ZSGSRD 41108
17-03-18 01:04:36.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:36.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:36.138 -07 000000581 INF: FPGA: Recv ZSGSRD 41105
17-03-18 01:04:36.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:36.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:36.148 -07 000000576 INF: FPGA: Recv ZPIEZORD 36231
17-03-18 01:04:36.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:36.158 -07 000000610 INF: Z Motor: Piezo is near 57.4 V (nominally 0 to 100 V), expect near 68.1 V, since DAC is at 6.813 V. Piezo Error = -10.7 V.
17-03-18 01:04:36.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -204.4 um, Read 10 ADC samples: Avg = 41105 (-203.4 uncal um), Error = 1.0 uncal um, Median = 41106 (-203.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 41099 (-203.4 uncal um), Max = 41108 (-203.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:04:36.158 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 41105, posNoise = 3, negNoise = 6
17-03-18 01:04:36.158 -07 000000610 INF: Z Motor: After move to -0.204390, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:36.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:04:36.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:36.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:36.158 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:36.158 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:36.158 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:36.158 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:36.158 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:36.158 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:36.168 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:04:36.168 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:36.178 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:04:36.178 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-18 01:04:36.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:36.378 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:36.678 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:36.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:36.678 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:36.678 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-18 01:04:36.868 -07 000000581 INF: FPGA: Recv @CAMSNAP 687
17-03-18 01:04:36.868 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:36.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 691 ms overall
17-03-18 01:04:37.228 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:04:37.268 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:04:37.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:37.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:37.268 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:04:37.378 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:04:37.468 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:37.478 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:37.488 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=46.68]
17-03-18 01:04:37.488 -07 000000610 INF: Scanning Z-Position: -0.202388
17-03-18 01:04:37.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 44212, sync = True, waitForSettling = True)
17-03-18 01:04:37.488 -07 000000610 INF: Z Motor: Moving to -0.202390 mm, started at -0.204391 mm, distance = 2.00 um
17-03-18 01:04:37.488 -07 000000610 INF: FPGA: Xmit ZDACW 44212\n [Z Motor]
17-03-18 01:04:37.488 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:04:37.498 -07 000000610 INF: FPGA: 'ZDACW 44212' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:04:37.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:37.498 -07 000000592 INF: FPGA: Recv ZDACR 44212
17-03-18 01:04:37.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:37.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:37.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:37.658 -07 000000576 INF: FPGA: Recv ZSGSRD 40797
17-03-18 01:04:37.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:37.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:37.668 -07 000000474 INF: FPGA: Recv ZSGSRD 40789
17-03-18 01:04:37.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:37.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:37.678 -07 000000576 INF: FPGA: Recv ZSGSRD 40791
17-03-18 01:04:37.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:37.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:37.688 -07 000000576 INF: FPGA: Recv ZSGSRD 40790
17-03-18 01:04:37.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:37.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:37.698 -07 000000591 INF: FPGA: Recv ZSGSRD 40793
17-03-18 01:04:37.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:37.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:37.708 -07 000000461 INF: FPGA: Recv ZSGSRD 40789
17-03-18 01:04:37.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:37.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:37.718 -07 000000592 INF: FPGA: Recv ZSGSRD 40790
17-03-18 01:04:37.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:37.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:37.728 -07 000000461 INF: FPGA: Recv ZSGSRD 40797
17-03-18 01:04:37.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:37.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:37.738 -07 000000591 INF: FPGA: Recv ZSGSRD 40793
17-03-18 01:04:37.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:37.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:37.748 -07 000000461 INF: FPGA: Recv ZSGSRD 40792
17-03-18 01:04:37.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:37.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:37.758 -07 000000591 INF: FPGA: Recv ZPIEZORD 35835
17-03-18 01:04:37.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:37.768 -07 000000610 INF: Z Motor: Piezo is near 56.6 V (nominally 0 to 100 V), expect near 67.5 V, since DAC is at 6.746 V. Piezo Error = -10.9 V.
17-03-18 01:04:37.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -202.4 um, Read 10 ADC samples: Avg = 40792 (-201.4 uncal um), Error = 1.0 uncal um, Median = 40792 (-201.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 40789 (-201.4 uncal um), Max = 40797 (-201.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:04:37.768 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 40792, posNoise = 5, negNoise = 3
17-03-18 01:04:37.768 -07 000000610 INF: Z Motor: After move to -0.202390, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:37.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:04:37.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:37.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:37.768 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:37.768 -07 000000591 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:37.768 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:37.768 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:37.768 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:37.768 -07 000000591 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:37.778 -07 000000591 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:04:37.778 -07 000000591 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:37.788 -07 000000591 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:04:37.788 -07 000000591 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-18 01:04:37.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:37.988 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:38.288 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:38.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:38.288 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:38.288 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:04:38.478 -07 000000581 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:38.478 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:38.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 692 ms overall
17-03-18 01:04:38.878 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 583 ms.
17-03-18 01:04:38.878 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:38.878 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:04:38.878 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-18 01:04:38.978 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:38.988 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:38.998 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=48.11]
17-03-18 01:04:38.998 -07 000000610 INF: Scanning Z-Position: -0.200388
17-03-18 01:04:38.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 43775, sync = True, waitForSettling = True)
17-03-18 01:04:38.998 -07 000000610 INF: Z Motor: Moving to -0.200389 mm, started at -0.202380 mm, distance = 1.99 um
17-03-18 01:04:38.998 -07 000000610 INF: FPGA: Xmit ZDACW 43775\n [Z Motor]
17-03-18 01:04:38.998 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:04:39.008 -07 000000610 INF: FPGA: 'ZDACW 43775' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:04:39.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:39.008 -07 000000430 INF: FPGA: Recv ZDACR 43775
17-03-18 01:04:39.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:39.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:39.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:39.168 -07 000000581 INF: FPGA: Recv ZSGSRD 40478
17-03-18 01:04:39.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:39.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:39.178 -07 000000592 INF: FPGA: Recv ZSGSRD 40479
17-03-18 01:04:39.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:39.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:39.188 -07 000000581 INF: FPGA: Recv ZSGSRD 40479
17-03-18 01:04:39.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:39.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:39.198 -07 000000576 INF: FPGA: Recv ZSGSRD 40482
17-03-18 01:04:39.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:39.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:39.208 -07 000000461 INF: FPGA: Recv ZSGSRD 40476
17-03-18 01:04:39.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:39.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:39.218 -07 000000591 INF: FPGA: Recv ZSGSRD 40481
17-03-18 01:04:39.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:39.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:39.228 -07 000000461 INF: FPGA: Recv ZSGSRD 40486
17-03-18 01:04:39.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:39.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:39.238 -07 000000591 INF: FPGA: Recv ZSGSRD 40485
17-03-18 01:04:39.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:39.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:39.248 -07 000000430 INF: FPGA: Recv ZSGSRD 40477
17-03-18 01:04:39.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:39.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:39.258 -07 000000592 INF: FPGA: Recv ZSGSRD 40482
17-03-18 01:04:39.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:39.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:39.268 -07 000000430 INF: FPGA: Recv ZPIEZORD 35445
17-03-18 01:04:39.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:39.278 -07 000000610 INF: Z Motor: Piezo is near 55.7 V (nominally 0 to 100 V), expect near 66.8 V, since DAC is at 6.680 V. Piezo Error = -11.1 V.
17-03-18 01:04:39.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -200.4 um, Read 10 ADC samples: Avg = 40480 (-199.4 uncal um), Error = 1.0 uncal um, Median = 40480 (-199.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 40476 (-199.4 uncal um), Max = 40486 (-199.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:04:39.278 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 40480, posNoise = 6, negNoise = 4
17-03-18 01:04:39.278 -07 000000610 INF: Z Motor: After move to -0.200389, error = 0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:39.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:04:39.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:39.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:39.278 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:39.278 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:39.278 -07 000000461 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:39.278 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:39.278 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:04:39.278 -07 000000461 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:39.288 -07 000000461 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:04:39.288 -07 000000461 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:39.298 -07 000000461 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:04:39.298 -07 000000461 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:04:39.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:39.498 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:39.798 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:39.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:39.798 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:39.798 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start.
17-03-18 01:04:39.988 -07 000000430 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:39.988 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:39.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall
17-03-18 01:04:40.388 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 587 ms.
17-03-18 01:04:40.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:40.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:40.388 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:04:40.598 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:40.608 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:40.618 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=47.65]
17-03-18 01:04:40.618 -07 000000610 INF: Scanning Z-Position: -0.198388
17-03-18 01:04:40.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 43338, sync = True, waitForSettling = True)
17-03-18 01:04:40.618 -07 000000610 INF: Z Motor: Moving to -0.198389 mm, started at -0.200375 mm, distance = 1.99 um
17-03-18 01:04:40.618 -07 000000610 INF: FPGA: Xmit ZDACW 43338\n [Z Motor]
17-03-18 01:04:40.618 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:04:40.628 -07 000000610 INF: FPGA: 'ZDACW 43338' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:04:40.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:40.628 -07 000000576 INF: FPGA: Recv ZDACR 43338
17-03-18 01:04:40.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:40.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:40.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:40.788 -07 000000455 INF: FPGA: Recv ZSGSRD 40167
17-03-18 01:04:40.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:40.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:40.798 -07 000000474 INF: FPGA: Recv ZSGSRD 40172
17-03-18 01:04:40.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:40.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:40.808 -07 000000592 INF: FPGA: Recv ZSGSRD 40172
17-03-18 01:04:40.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:40.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:40.818 -07 000000576 INF: FPGA: Recv ZSGSRD 40173
17-03-18 01:04:40.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:40.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:40.828 -07 000000455 INF: FPGA: Recv ZSGSRD 40165
17-03-18 01:04:40.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:40.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:40.838 -07 000000461 INF: FPGA: Recv ZSGSRD 40171
17-03-18 01:04:40.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:40.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:40.848 -07 000000455 INF: FPGA: Recv ZSGSRD 40171
17-03-18 01:04:40.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:40.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:40.858 -07 000000576 INF: FPGA: Recv ZSGSRD 40174
17-03-18 01:04:40.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:40.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:40.868 -07 000000581 INF: FPGA: Recv ZSGSRD 40167
17-03-18 01:04:40.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:40.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:40.878 -07 000000430 INF: FPGA: Recv ZSGSRD 40171
17-03-18 01:04:40.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:40.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:40.888 -07 000000591 INF: FPGA: Recv ZPIEZORD 35109
17-03-18 01:04:40.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:40.898 -07 000000610 INF: Z Motor: Piezo is near 55.0 V (nominally 0 to 100 V), expect near 66.1 V, since DAC is at 6.613 V. Piezo Error = -11.1 V.
17-03-18 01:04:40.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -198.4 um, Read 10 ADC samples: Avg = 40170 (-197.4 uncal um), Error = 0.9 uncal um, Median = 40171 (-197.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 40165 (-197.4 uncal um), Max = 40174 (-197.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:04:40.898 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 40170, posNoise = 4, negNoise = 5
17-03-18 01:04:40.898 -07 000000610 INF: Z Motor: After move to -0.198389, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:40.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:04:40.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:40.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:40.898 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:40.898 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:40.898 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:40.898 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:40.898 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:40.898 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:40.908 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:04:40.908 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:40.918 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:04:40.918 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-18 01:04:40.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:41.118 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:41.368 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.986717,
17-03-18 01:04:41.418 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:41.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:41.418 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:41.428 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-18 01:04:41.608 -07 000000461 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:41.608 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:41.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall
17-03-18 01:04:42.008 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-18 01:04:42.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:42.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:42.008 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:04:42.108 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:42.118 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:42.128 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=47.63]
17-03-18 01:04:42.128 -07 000000610 INF: Scanning Z-Position: -0.196388
17-03-18 01:04:42.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 42901, sync = True, waitForSettling = True)
17-03-18 01:04:42.128 -07 000000610 INF: Z Motor: Moving to -0.196388 mm, started at -0.198384 mm, distance = 2.00 um
17-03-18 01:04:42.128 -07 000000610 INF: FPGA: Xmit ZDACW 42901\n [Z Motor]
17-03-18 01:04:42.128 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:04:42.138 -07 000000610 INF: FPGA: 'ZDACW 42901' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:04:42.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:42.138 -07 000000591 INF: FPGA: Recv ZDACR 42901
17-03-18 01:04:42.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:42.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:42.228 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:04:42.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:04:42.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:42.298 -07 000000581 INF: FPGA: Recv ZSGSRD 39863
17-03-18 01:04:42.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:42.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:42.308 -07 000000576 INF: FPGA: Recv ZSGSRD 39865
17-03-18 01:04:42.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:42.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:42.318 -07 000000576 INF: FPGA: Recv ZSGSRD 39851
17-03-18 01:04:42.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:42.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:42.328 -07 000000591 INF: FPGA: Recv ZSGSRD 39857
17-03-18 01:04:42.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:42.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:42.338 -07 000000592 INF: FPGA: Recv ZSGSRD 39861
17-03-18 01:04:42.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:42.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:42.348 -07 000000430 INF: FPGA: Recv ZSGSRD 39855
17-03-18 01:04:42.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:42.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:42.358 -07 000000576 INF: FPGA: Recv ZSGSRD 39857
17-03-18 01:04:42.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:42.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:42.368 -07 000000462 INF: FPGA: Recv ZSGSRD 39856
17-03-18 01:04:42.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:42.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:42.378 -07 000000474 INF: FPGA: Recv ZSGSRD 39858
17-03-18 01:04:42.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:42.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:42.388 -07 000000461 INF: FPGA: Recv ZSGSRD 39862
17-03-18 01:04:42.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:42.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:42.398 -07 000000430 INF: FPGA: Recv ZPIEZORD 34709
17-03-18 01:04:42.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:42.408 -07 000000610 INF: Z Motor: Piezo is near 54.1 V (nominally 0 to 100 V), expect near 65.5 V, since DAC is at 6.546 V. Piezo Error = -11.3 V.
17-03-18 01:04:42.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -196.4 um, Read 10 ADC samples: Avg = 39858 (-195.4 uncal um), Error = 0.9 uncal um, Median = 39858 (-195.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 39851 (-195.4 uncal um), Max = 39865 (-195.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:04:42.408 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 39858, posNoise = 7, negNoise = 7
17-03-18 01:04:42.408 -07 000000610 INF: Z Motor: After move to -0.196388, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:42.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:04:42.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:42.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:42.408 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:42.408 -07 000000461 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:42.408 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:42.408 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:42.408 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:42.408 -07 000000461 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:42.418 -07 000000461 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:04:42.418 -07 000000461 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:42.428 -07 000000461 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:04:42.428 -07 000000461 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-18 01:04:42.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:42.628 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:42.928 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:42.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:42.928 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:42.928 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:04:43.118 -07 000000576 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:43.118 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:43.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 682 ms to get response, and 689 ms overall
17-03-18 01:04:43.508 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:04:43.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:43.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:43.518 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:04:43.618 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:43.628 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:43.638 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=47.43]
17-03-18 01:04:43.638 -07 000000610 INF: Scanning Z-Position: -0.194388
17-03-18 01:04:43.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 42464, sync = True, waitForSettling = True)
17-03-18 01:04:43.638 -07 000000610 INF: Z Motor: Moving to -0.194388 mm, started at -0.196380 mm, distance = 1.99 um
17-03-18 01:04:43.638 -07 000000610 INF: FPGA: Xmit ZDACW 42464\n [Z Motor]
17-03-18 01:04:43.638 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:04:43.648 -07 000000610 INF: FPGA: 'ZDACW 42464' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:04:43.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:43.648 -07 000000576 INF: FPGA: Recv ZDACR 42464
17-03-18 01:04:43.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:43.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:43.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:43.808 -07 000000576 INF: FPGA: Recv ZSGSRD 39542
17-03-18 01:04:43.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:43.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:43.818 -07 000000592 INF: FPGA: Recv ZSGSRD 39543
17-03-18 01:04:43.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:43.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:43.828 -07 000000576 INF: FPGA: Recv ZSGSRD 39551
17-03-18 01:04:43.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:43.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:43.838 -07 000000461 INF: FPGA: Recv ZSGSRD 39546
17-03-18 01:04:43.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:43.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:43.848 -07 000000461 INF: FPGA: Recv ZSGSRD 39547
17-03-18 01:04:43.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:43.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:43.858 -07 000000592 INF: FPGA: Recv ZSGSRD 39539
17-03-18 01:04:43.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:43.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:43.868 -07 000000592 INF: FPGA: Recv ZSGSRD 39545
17-03-18 01:04:43.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:43.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:43.878 -07 000000461 INF: FPGA: Recv ZSGSRD 39553
17-03-18 01:04:43.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:43.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:43.888 -07 000000576 INF: FPGA: Recv ZSGSRD 39541
17-03-18 01:04:43.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:43.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:43.898 -07 000000461 INF: FPGA: Recv ZSGSRD 39547
17-03-18 01:04:43.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:43.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:43.908 -07 000000461 INF: FPGA: Recv ZPIEZORD 34371
17-03-18 01:04:43.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:43.918 -07 000000610 INF: Z Motor: Piezo is near 53.4 V (nominally 0 to 100 V), expect near 64.8 V, since DAC is at 6.480 V. Piezo Error = -11.4 V.
17-03-18 01:04:43.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -194.4 um, Read 10 ADC samples: Avg = 39545 (-193.4 uncal um), Error = 1.0 uncal um, Median = 39546 (-193.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 39539 (-193.4 uncal um), Max = 39553 (-193.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:04:43.918 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 39545, posNoise = 8, negNoise = 6
17-03-18 01:04:43.918 -07 000000610 INF: Z Motor: After move to -0.194388, error = 0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:43.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:04:43.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:43.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:43.918 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:43.918 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:43.918 -07 000000591 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:43.918 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:43.918 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:43.918 -07 000000591 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:43.918 -07 000000591 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:04:43.928 -07 000000591 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:43.938 -07 000000591 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:04:43.938 -07 000000591 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:04:43.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:44.138 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:44.438 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:44.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:44.438 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:44.448 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) start.
17-03-18 01:04:44.628 -07 000000592 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:44.628 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:44.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 690 ms overall
17-03-18 01:04:45.028 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) end. Duration was 583 ms.
17-03-18 01:04:45.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:45.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:45.028 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 596 ms.
17-03-18 01:04:45.228 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:45.238 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:45.248 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=48.62]
17-03-18 01:04:45.248 -07 000000610 INF: Scanning Z-Position: -0.192388
17-03-18 01:04:45.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 42027, sync = True, waitForSettling = True)
17-03-18 01:04:45.248 -07 000000610 INF: Z Motor: Moving to -0.192387 mm, started at -0.194369 mm, distance = 1.98 um
17-03-18 01:04:45.248 -07 000000610 INF: FPGA: Xmit ZDACW 42027\n [Z Motor]
17-03-18 01:04:45.258 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:04:45.258 -07 000000610 INF: FPGA: 'ZDACW 42027' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:04:45.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:45.258 -07 000000592 INF: FPGA: Recv ZDACR 42027
17-03-18 01:04:45.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:04:45.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:45.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:45.418 -07 000000591 INF: FPGA: Recv ZSGSRD 39237
17-03-18 01:04:45.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:45.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:45.428 -07 000000455 INF: FPGA: Recv ZSGSRD 39235
17-03-18 01:04:45.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:45.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:45.438 -07 000000581 INF: FPGA: Recv ZSGSRD 39233
17-03-18 01:04:45.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:45.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:45.448 -07 000000462 INF: FPGA: Recv ZSGSRD 39239
17-03-18 01:04:45.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:45.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:45.458 -07 000000455 INF: FPGA: Recv ZSGSRD 39235
17-03-18 01:04:45.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:45.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:45.468 -07 000000581 INF: FPGA: Recv ZSGSRD 39235
17-03-18 01:04:45.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:45.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:45.478 -07 000000592 INF: FPGA: Recv ZSGSRD 39233
17-03-18 01:04:45.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:45.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:45.488 -07 000000455 INF: FPGA: Recv ZSGSRD 39238
17-03-18 01:04:45.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:45.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:45.498 -07 000000576 INF: FPGA: Recv ZSGSRD 39240
17-03-18 01:04:45.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:45.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:45.508 -07 000000455 INF: FPGA: Recv ZSGSRD 39230
17-03-18 01:04:45.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:45.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:45.518 -07 000000461 INF: FPGA: Recv ZPIEZORD 34024
17-03-18 01:04:45.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:45.528 -07 000000610 INF: Z Motor: Piezo is near 52.7 V (nominally 0 to 100 V), expect near 64.1 V, since DAC is at 6.413 V. Piezo Error = -11.4 V.
17-03-18 01:04:45.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -192.4 um, Read 10 ADC samples: Avg = 39236 (-191.5 uncal um), Error = 0.9 uncal um, Median = 39235 (-191.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 39230 (-191.4 uncal um), Max = 39240 (-191.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:04:45.528 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 39236, posNoise = 4, negNoise = 6
17-03-18 01:04:45.528 -07 000000610 INF: Z Motor: After move to -0.192387, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:45.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 01:04:45.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:45.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:45.528 -07 000000462 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:45.528 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:45.528 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:45.528 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:45.528 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:45.528 -07 000000462 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:45.548 -07 000000462 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 10 ms.
17-03-18 01:04:45.548 -07 000000462 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:45.558 -07 000000462 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:04:45.558 -07 000000462 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 23 ms.
17-03-18 01:04:45.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:45.758 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:46.058 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:46.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:46.058 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:46.058 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-18 01:04:46.248 -07 000000455 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:46.248 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:46.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall
17-03-18 01:04:46.638 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:04:46.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:46.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:46.648 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:04:46.728 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.978563,
17-03-18 01:04:46.748 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:46.758 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:46.768 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=48.31]
17-03-18 01:04:46.768 -07 000000610 INF: Scanning Z-Position: -0.190388
17-03-18 01:04:46.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 41590, sync = True, waitForSettling = True)
17-03-18 01:04:46.768 -07 000000610 INF: Z Motor: Moving to -0.190387 mm, started at -0.192384 mm, distance = 2.00 um
17-03-18 01:04:46.768 -07 000000610 INF: FPGA: Xmit ZDACW 41590\n [Z Motor]
17-03-18 01:04:46.768 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:04:46.778 -07 000000610 INF: FPGA: 'ZDACW 41590' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:04:46.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:46.778 -07 000000461 INF: FPGA: Recv ZDACR 41590
17-03-18 01:04:46.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:46.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:46.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:46.938 -07 000000461 INF: FPGA: Recv ZSGSRD 38925
17-03-18 01:04:46.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:46.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:46.948 -07 000000461 INF: FPGA: Recv ZSGSRD 38927
17-03-18 01:04:46.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:46.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:46.958 -07 000000461 INF: FPGA: Recv ZSGSRD 38919
17-03-18 01:04:46.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:46.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:46.968 -07 000000461 INF: FPGA: Recv ZSGSRD 38921
17-03-18 01:04:46.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:46.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:46.978 -07 000000581 INF: FPGA: Recv ZSGSRD 38928
17-03-18 01:04:46.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:46.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:46.988 -07 000000461 INF: FPGA: Recv ZSGSRD 38922
17-03-18 01:04:46.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:46.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:46.998 -07 000000455 INF: FPGA: Recv ZSGSRD 38924
17-03-18 01:04:47.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:47.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:47.008 -07 000000455 INF: FPGA: Recv ZSGSRD 38920
17-03-18 01:04:47.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:47.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:47.018 -07 000000455 INF: FPGA: Recv ZSGSRD 38925
17-03-18 01:04:47.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:47.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:47.028 -07 000000455 INF: FPGA: Recv ZSGSRD 38928
17-03-18 01:04:47.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:47.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:47.038 -07 000000455 INF: FPGA: Recv ZPIEZORD 33649
17-03-18 01:04:47.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:47.048 -07 000000610 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 63.5 V, since DAC is at 6.346 V. Piezo Error = -11.6 V.
17-03-18 01:04:47.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -190.4 um, Read 10 ADC samples: Avg = 38924 (-189.5 uncal um), Error = 0.9 uncal um, Median = 38924 (-189.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 38919 (-189.4 uncal um), Max = 38928 (-189.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:04:47.048 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38924, posNoise = 4, negNoise = 5
17-03-18 01:04:47.048 -07 000000610 INF: Z Motor: After move to -0.190387, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:47.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:04:47.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:47.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:47.048 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:47.048 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:47.058 -07 000000455 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:47.058 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:47.058 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:47.058 -07 000000455 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:47.058 -07 000000455 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:04:47.058 -07 000000455 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:47.068 -07 000000455 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 01:04:47.068 -07 000000455 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-18 01:04:47.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:47.228 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:04:47.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:04:47.268 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 193
17-03-18 01:04:47.568 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 493
17-03-18 01:04:47.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 493
17-03-18 01:04:47.578 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:47.578 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:04:47.768 -07 000000455 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:47.768 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:47.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 681 ms to get response, and 691 ms overall
17-03-18 01:04:48.158 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 582 ms.
17-03-18 01:04:48.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:48.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:48.168 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-18 01:04:48.368 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:48.378 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:48.388 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=49.24]
17-03-18 01:04:48.388 -07 000000610 INF: Scanning Z-Position: -0.188388
17-03-18 01:04:48.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 41153, sync = True, waitForSettling = True)
17-03-18 01:04:48.388 -07 000000610 INF: Z Motor: Moving to -0.188386 mm, started at -0.190379 mm, distance = 1.99 um
17-03-18 01:04:48.388 -07 000000610 INF: FPGA: Xmit ZDACW 41153\n [Z Motor]
17-03-18 01:04:48.388 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:04:48.398 -07 000000610 INF: FPGA: 'ZDACW 41153' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:04:48.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:48.398 -07 000000455 INF: FPGA: Recv ZDACR 41153
17-03-18 01:04:48.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:48.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:48.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:48.558 -07 000000455 INF: FPGA: Recv ZSGSRD 38615
17-03-18 01:04:48.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:48.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:48.578 -07 000000455 INF: FPGA: Recv ZSGSRD 38613
17-03-18 01:04:48.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:04:48.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:48.588 -07 000000455 INF: FPGA: Recv ZSGSRD 38607
17-03-18 01:04:48.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:48.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:48.598 -07 000000455 INF: FPGA: Recv ZSGSRD 38619
17-03-18 01:04:48.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:48.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:48.608 -07 000000474 INF: FPGA: Recv ZSGSRD 38616
17-03-18 01:04:48.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:48.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:48.618 -07 000000430 INF: FPGA: Recv ZSGSRD 38609
17-03-18 01:04:48.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:48.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:48.628 -07 000000455 INF: FPGA: Recv ZSGSRD 38613
17-03-18 01:04:48.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:48.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:48.638 -07 000000430 INF: FPGA: Recv ZSGSRD 38615
17-03-18 01:04:48.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:48.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:48.648 -07 000000455 INF: FPGA: Recv ZSGSRD 38614
17-03-18 01:04:48.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:48.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:48.658 -07 000000430 INF: FPGA: Recv ZSGSRD 38617
17-03-18 01:04:48.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:48.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:48.668 -07 000000474 INF: FPGA: Recv ZPIEZORD 33310
17-03-18 01:04:48.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:48.678 -07 000000610 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 62.8 V, since DAC is at 6.280 V. Piezo Error = -11.6 V.
17-03-18 01:04:48.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -188.4 um, Read 10 ADC samples: Avg = 38614 (-187.5 uncal um), Error = 0.9 uncal um, Median = 38614 (-187.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 38607 (-187.4 uncal um), Max = 38619 (-187.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:04:48.678 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38614, posNoise = 5, negNoise = 7
17-03-18 01:04:48.678 -07 000000610 INF: Z Motor: After move to -0.188386, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:48.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 01:04:48.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:48.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:48.678 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:48.678 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:48.678 -07 000000474 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:48.678 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:48.678 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:48.678 -07 000000474 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:48.678 -07 000000474 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:04:48.678 -07 000000474 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:48.698 -07 000000474 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:04:48.698 -07 000000474 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:04:48.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:48.898 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 194
17-03-18 01:04:49.198 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 494
17-03-18 01:04:49.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 494
17-03-18 01:04:49.198 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:49.198 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) start.
17-03-18 01:04:49.388 -07 000000576 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:49.388 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:49.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall
17-03-18 01:04:49.778 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) end. Duration was 579 ms.
17-03-18 01:04:49.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:49.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:49.788 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-18 01:04:49.988 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:49.998 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:50.008 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=51.21]
17-03-18 01:04:50.008 -07 000000610 INF: Scanning Z-Position: -0.186388
17-03-18 01:04:50.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 40716, sync = True, waitForSettling = True)
17-03-18 01:04:50.008 -07 000000610 INF: Z Motor: Moving to -0.186386 mm, started at -0.188388 mm, distance = 2.00 um
17-03-18 01:04:50.008 -07 000000610 INF: FPGA: Xmit ZDACW 40716\n [Z Motor]
17-03-18 01:04:50.018 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:04:50.018 -07 000000610 INF: FPGA: 'ZDACW 40716' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:04:50.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:50.018 -07 000000430 INF: FPGA: Recv ZDACR 40716
17-03-18 01:04:50.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:50.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:50.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:50.178 -07 000000629 INF: FPGA: Recv ZSGSRD 38301
17-03-18 01:04:50.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:50.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:50.188 -07 000000455 INF: FPGA: Recv ZSGSRD 38305
17-03-18 01:04:50.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:50.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:50.198 -07 000000474 INF: FPGA: Recv ZSGSRD 38296
17-03-18 01:04:50.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:50.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:50.208 -07 000000430 INF: FPGA: Recv ZSGSRD 38305
17-03-18 01:04:50.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:50.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:50.218 -07 000000576 INF: FPGA: Recv ZSGSRD 38306
17-03-18 01:04:50.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:50.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:50.228 -07 000000629 INF: FPGA: Recv ZSGSRD 38302
17-03-18 01:04:50.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:50.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:50.238 -07 000000455 INF: FPGA: Recv ZSGSRD 38303
17-03-18 01:04:50.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:50.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:50.248 -07 000000591 INF: FPGA: Recv ZSGSRD 38297
17-03-18 01:04:50.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:50.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:50.258 -07 000000629 INF: FPGA: Recv ZSGSRD 38308
17-03-18 01:04:50.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:50.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:50.268 -07 000000576 INF: FPGA: Recv ZSGSRD 38299
17-03-18 01:04:50.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:50.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:50.278 -07 000000629 INF: FPGA: Recv ZPIEZORD 32988
17-03-18 01:04:50.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:50.288 -07 000000610 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 62.1 V, since DAC is at 6.213 V. Piezo Error = -11.7 V.
17-03-18 01:04:50.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -186.4 um, Read 10 ADC samples: Avg = 38302 (-185.5 uncal um), Error = 0.9 uncal um, Median = 38302 (-185.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 38296 (-185.4 uncal um), Max = 38308 (-185.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:04:50.288 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38302, posNoise = 6, negNoise = 6
17-03-18 01:04:50.288 -07 000000610 INF: Z Motor: After move to -0.186386, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:50.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 01:04:50.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:50.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:51.218 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:51.218 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:51.218 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:51.218 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:51.218 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:51.218 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:51.218 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:04:51.218 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:51.228 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:04:51.228 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:04:51.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:51.428 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:51.728 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:51.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:51.728 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:51.738 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-18 01:04:51.918 -07 000000629 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:51.918 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:51.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 681 ms to get response, and 692 ms overall
17-03-18 01:04:52.088 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.981281,
17-03-18 01:04:52.228 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:04:52.318 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 579 ms.
17-03-18 01:04:52.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:52.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:52.318 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms.
17-03-18 01:04:52.388 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:04:52.428 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:52.438 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:52.448 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=50.95]
17-03-18 01:04:52.448 -07 000000610 INF: Scanning Z-Position: -0.184388
17-03-18 01:04:52.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 40280, sync = True, waitForSettling = True)
17-03-18 01:04:52.448 -07 000000610 INF: Z Motor: Moving to -0.184390 mm, started at -0.186384 mm, distance = 1.99 um
17-03-18 01:04:52.448 -07 000000610 INF: FPGA: Xmit ZDACW 40280\n [Z Motor]
17-03-18 01:04:52.448 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:04:52.458 -07 000000610 INF: FPGA: 'ZDACW 40280' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:04:52.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:52.458 -07 000000629 INF: FPGA: Recv ZDACR 40280
17-03-18 01:04:52.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:52.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:52.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:52.618 -07 000000455 INF: FPGA: Recv ZSGSRD 37990
17-03-18 01:04:52.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:52.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:52.628 -07 000000592 INF: FPGA: Recv ZSGSRD 37994
17-03-18 01:04:52.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:52.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:52.638 -07 000000455 INF: FPGA: Recv ZSGSRD 37994
17-03-18 01:04:52.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:52.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:52.648 -07 000000592 INF: FPGA: Recv ZSGSRD 37995
17-03-18 01:04:52.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:52.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:52.658 -07 000000629 INF: FPGA: Recv ZSGSRD 37996
17-03-18 01:04:52.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:52.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:52.668 -07 000000430 INF: FPGA: Recv ZSGSRD 37987
17-03-18 01:04:52.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:52.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:52.678 -07 000000629 INF: FPGA: Recv ZSGSRD 37999
17-03-18 01:04:52.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:52.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:52.688 -07 000000592 INF: FPGA: Recv ZSGSRD 37993
17-03-18 01:04:52.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:52.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:52.698 -07 000000430 INF: FPGA: Recv ZSGSRD 37988
17-03-18 01:04:52.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:52.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:52.708 -07 000000576 INF: FPGA: Recv ZSGSRD 37992
17-03-18 01:04:52.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:52.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:52.718 -07 000000629 INF: FPGA: Recv ZPIEZORD 32640
17-03-18 01:04:52.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:52.728 -07 000000610 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 61.5 V, since DAC is at 6.146 V. Piezo Error = -11.7 V.
17-03-18 01:04:52.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -184.4 um, Read 10 ADC samples: Avg = 37993 (-183.5 uncal um), Error = 0.9 uncal um, Median = 37994 (-183.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37987 (-183.5 uncal um), Max = 37999 (-183.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:04:52.728 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37993, posNoise = 6, negNoise = 6
17-03-18 01:04:52.728 -07 000000610 INF: Z Motor: After move to -0.184390, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:52.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:04:52.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:52.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:52.728 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:52.728 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:52.728 -07 000000455 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:52.728 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:52.728 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:52.728 -07 000000455 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:52.738 -07 000000455 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:04:52.738 -07 000000455 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:52.748 -07 000000455 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:04:52.748 -07 000000455 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:04:52.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:52.948 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:53.248 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:53.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:53.248 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:53.248 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:04:53.438 -07 000000455 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:53.438 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:53.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 685 ms to get response, and 691 ms overall
17-03-18 01:04:53.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 579 ms.
17-03-18 01:04:53.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:53.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:53.838 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-18 01:04:53.938 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:53.948 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:53.958 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=51.82]
17-03-18 01:04:53.958 -07 000000610 INF: Scanning Z-Position: -0.182388
17-03-18 01:04:53.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 39843, sync = True, waitForSettling = True)
17-03-18 01:04:53.958 -07 000000610 INF: Z Motor: Moving to -0.182390 mm, started at -0.184398 mm, distance = 2.01 um
17-03-18 01:04:53.958 -07 000000610 INF: FPGA: Xmit ZDACW 39843\n [Z Motor]
17-03-18 01:04:53.958 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:04:53.968 -07 000000610 INF: FPGA: 'ZDACW 39843' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:04:53.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:53.968 -07 000000576 INF: FPGA: Recv ZDACR 39843
17-03-18 01:04:53.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:53.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:54.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:54.128 -07 000000629 INF: FPGA: Recv ZSGSRD 37676
17-03-18 01:04:54.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:54.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:54.138 -07 000000591 INF: FPGA: Recv ZSGSRD 37684
17-03-18 01:04:54.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:54.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:54.148 -07 000000592 INF: FPGA: Recv ZSGSRD 37684
17-03-18 01:04:54.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:54.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:54.158 -07 000000430 INF: FPGA: Recv ZSGSRD 37678
17-03-18 01:04:54.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:54.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:54.168 -07 000000592 INF: FPGA: Recv ZSGSRD 37684
17-03-18 01:04:54.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:54.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:54.178 -07 000000455 INF: FPGA: Recv ZSGSRD 37680
17-03-18 01:04:54.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:54.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:54.188 -07 000000591 INF: FPGA: Recv ZSGSRD 37682
17-03-18 01:04:54.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:54.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:54.198 -07 000000430 INF: FPGA: Recv ZSGSRD 37681
17-03-18 01:04:54.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:54.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:54.208 -07 000000629 INF: FPGA: Recv ZSGSRD 37675
17-03-18 01:04:54.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:54.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:54.218 -07 000000576 INF: FPGA: Recv ZSGSRD 37685
17-03-18 01:04:54.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:54.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:54.228 -07 000000592 INF: FPGA: Recv ZPIEZORD 32304
17-03-18 01:04:54.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:54.238 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 60.8 V, since DAC is at 6.080 V. Piezo Error = -11.8 V.
17-03-18 01:04:54.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -182.4 um, Read 10 ADC samples: Avg = 37681 (-181.5 uncal um), Error = 0.9 uncal um, Median = 37682 (-181.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37675 (-181.5 uncal um), Max = 37685 (-181.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:04:54.238 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37681, posNoise = 4, negNoise = 6
17-03-18 01:04:54.238 -07 000000610 INF: Z Motor: After move to -0.182390, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:54.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:04:54.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:54.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:54.238 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:54.238 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:54.238 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:54.238 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:54.238 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:54.238 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:54.248 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:04:54.248 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:54.258 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:04:54.258 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:04:54.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:54.478 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:54.768 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:54.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:54.768 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:54.778 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) start.
17-03-18 01:04:54.958 -07 000000430 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:54.958 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:54.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 679 ms to get response, and 703 ms overall
17-03-18 01:04:55.358 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) end. Duration was 577 ms.
17-03-18 01:04:55.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:55.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:55.358 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 587 ms.
17-03-18 01:04:55.668 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:55.678 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:55.688 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=52.45]
17-03-18 01:04:55.688 -07 000000610 INF: Scanning Z-Position: -0.180388
17-03-18 01:04:55.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 39406, sync = True, waitForSettling = True)
17-03-18 01:04:55.688 -07 000000610 INF: Z Motor: Moving to -0.180389 mm, started at -0.182394 mm, distance = 2.00 um
17-03-18 01:04:55.688 -07 000000610 INF: FPGA: Xmit ZDACW 39406\n [Z Motor]
17-03-18 01:04:55.698 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:04:55.698 -07 000000610 INF: FPGA: 'ZDACW 39406' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-18 01:04:55.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:55.698 -07 000000591 INF: FPGA: Recv ZDACR 39406
17-03-18 01:04:55.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:04:55.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:55.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:55.858 -07 000000430 INF: FPGA: Recv ZSGSRD 37365
17-03-18 01:04:55.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:55.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:55.868 -07 000000455 INF: FPGA: Recv ZSGSRD 37372
17-03-18 01:04:55.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:55.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:55.878 -07 000000592 INF: FPGA: Recv ZSGSRD 37375
17-03-18 01:04:55.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:55.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:55.888 -07 000000430 INF: FPGA: Recv ZSGSRD 37365
17-03-18 01:04:55.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:55.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:55.898 -07 000000576 INF: FPGA: Recv ZSGSRD 37365
17-03-18 01:04:55.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:55.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:55.908 -07 000000461 INF: FPGA: Recv ZSGSRD 37372
17-03-18 01:04:55.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:55.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:55.918 -07 000000629 INF: FPGA: Recv ZSGSRD 37372
17-03-18 01:04:55.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:55.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:55.928 -07 000000461 INF: FPGA: Recv ZSGSRD 37364
17-03-18 01:04:55.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:55.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:55.938 -07 000000576 INF: FPGA: Recv ZSGSRD 37370
17-03-18 01:04:55.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:55.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:55.948 -07 000000591 INF: FPGA: Recv ZSGSRD 37370
17-03-18 01:04:55.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:55.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:55.958 -07 000000576 INF: FPGA: Recv ZPIEZORD 32009
17-03-18 01:04:55.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:55.968 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 60.1 V, since DAC is at 6.013 V. Piezo Error = -11.8 V.
17-03-18 01:04:55.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -180.4 um, Read 10 ADC samples: Avg = 37369 (-179.5 uncal um), Error = 0.9 uncal um, Median = 37370 (-179.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37364 (-179.5 uncal um), Max = 37375 (-179.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:04:55.968 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37369, posNoise = 6, negNoise = 5
17-03-18 01:04:55.968 -07 000000610 INF: Z Motor: After move to -0.180389, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:55.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 01:04:55.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:55.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:55.968 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:55.968 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:55.968 -07 000000455 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:55.968 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:55.968 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:55.968 -07 000000455 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:55.978 -07 000000455 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:04:55.978 -07 000000455 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:55.988 -07 000000455 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:04:55.988 -07 000000455 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:04:55.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:56.188 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:56.488 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:56.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:56.488 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:56.488 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-18 01:04:56.678 -07 000000455 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:56.678 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:56.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall
17-03-18 01:04:57.078 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-18 01:04:57.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:57.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:57.078 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-18 01:04:57.178 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:57.188 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:57.198 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=52.82]
17-03-18 01:04:57.198 -07 000000610 INF: Scanning Z-Position: -0.178388
17-03-18 01:04:57.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 38969, sync = True, waitForSettling = True)
17-03-18 01:04:57.198 -07 000000610 INF: Z Motor: Moving to -0.178389 mm, started at -0.180390 mm, distance = 2.00 um
17-03-18 01:04:57.198 -07 000000610 INF: FPGA: Xmit ZDACW 38969\n [Z Motor]
17-03-18 01:04:57.198 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:04:57.208 -07 000000610 INF: FPGA: 'ZDACW 38969' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:04:57.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:57.208 -07 000000581 INF: FPGA: Recv ZDACR 38969
17-03-18 01:04:57.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:57.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:57.228 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:04:57.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:04:57.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:57.368 -07 000000455 INF: FPGA: Recv ZSGSRD 37062
17-03-18 01:04:57.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:57.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:57.378 -07 000000581 INF: FPGA: Recv ZSGSRD 37063
17-03-18 01:04:57.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:04:57.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:57.388 -07 000000591 INF: FPGA: Recv ZSGSRD 37057
17-03-18 01:04:57.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:57.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:57.398 -07 000000629 INF: FPGA: Recv ZSGSRD 37060
17-03-18 01:04:57.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:57.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:57.408 -07 000000430 INF: FPGA: Recv ZSGSRD 37061
17-03-18 01:04:57.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:57.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:57.418 -07 000000581 INF: FPGA: Recv ZSGSRD 37057
17-03-18 01:04:57.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:57.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:57.428 -07 000000430 INF: FPGA: Recv ZSGSRD 37058
17-03-18 01:04:57.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:57.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:57.448 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.96762,
17-03-18 01:04:57.448 -07 000000430 INF: FPGA: Recv ZSGSRD 37063
17-03-18 01:04:57.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:04:57.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:57.478 -07 000000581 INF: FPGA: Recv ZSGSRD 37061
17-03-18 01:04:57.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:04:57.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:57.488 -07 000000591 INF: FPGA: Recv ZSGSRD 37062
17-03-18 01:04:57.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:57.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:57.518 -07 000000462 INF: FPGA: Recv ZPIEZORD 31673
17-03-18 01:04:57.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:04:57.528 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.946 V. Piezo Error = -11.8 V.
17-03-18 01:04:57.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37060 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37061 (-177.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 37057 (-177.5 uncal um), Max = 37063 (-177.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:04:57.528 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37060, posNoise = 3, negNoise = 3
17-03-18 01:04:57.528 -07 000000610 INF: Z Motor: After move to -0.178389, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:57.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 328 ms)
17-03-18 01:04:57.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:57.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:57.528 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:57.528 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:57.528 -07 000000629 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:57.528 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:57.528 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:57.528 -07 000000629 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:57.538 -07 000000629 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:04:57.538 -07 000000629 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:57.548 -07 000000629 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:04:57.548 -07 000000629 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:04:57.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:57.748 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:58.048 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:58.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:58.048 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:58.048 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:04:58.238 -07 000000629 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:58.238 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:58.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall
17-03-18 01:04:58.638 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 583 ms.
17-03-18 01:04:58.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:04:58.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:04:58.638 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-18 01:04:58.738 -07 000000610 INF: ComputeBrenner start
17-03-18 01:04:58.748 -07 000000610 INF: Image SNR check: start
17-03-18 01:04:58.758 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=58.22]
17-03-18 01:04:58.758 -07 000000610 INF: Scanning Z-Position: -0.176388
17-03-18 01:04:58.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 38532, sync = True, waitForSettling = True)
17-03-18 01:04:58.758 -07 000000610 INF: Z Motor: Moving to -0.176388 mm, started at -0.178405 mm, distance = 2.02 um
17-03-18 01:04:58.758 -07 000000610 INF: FPGA: Xmit ZDACW 38532\n [Z Motor]
17-03-18 01:04:58.758 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:04:58.768 -07 000000610 INF: FPGA: 'ZDACW 38532' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:04:58.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:04:58.768 -07 000000629 INF: FPGA: Recv ZDACR 38532
17-03-18 01:04:58.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:58.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:04:58.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:58.928 -07 000000629 INF: FPGA: Recv ZSGSRD 36745
17-03-18 01:04:58.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:58.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:58.938 -07 000000430 INF: FPGA: Recv ZSGSRD 36749
17-03-18 01:04:58.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:58.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:58.948 -07 000000430 INF: FPGA: Recv ZSGSRD 36747
17-03-18 01:04:58.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:58.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:58.958 -07 000000629 INF: FPGA: Recv ZSGSRD 36745
17-03-18 01:04:58.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:58.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:58.968 -07 000000591 INF: FPGA: Recv ZSGSRD 36752
17-03-18 01:04:58.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:58.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:58.978 -07 000000591 INF: FPGA: Recv ZSGSRD 36747
17-03-18 01:04:58.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:58.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:58.988 -07 000000581 INF: FPGA: Recv ZSGSRD 36749
17-03-18 01:04:58.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:58.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:58.998 -07 000000581 INF: FPGA: Recv ZSGSRD 36744
17-03-18 01:04:59.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:59.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:59.008 -07 000000629 INF: FPGA: Recv ZSGSRD 36742
17-03-18 01:04:59.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:59.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:04:59.018 -07 000000462 INF: FPGA: Recv ZSGSRD 36748
17-03-18 01:04:59.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:59.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:04:59.028 -07 000000581 INF: FPGA: Recv ZPIEZORD 31368
17-03-18 01:04:59.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:04:59.038 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.880 V. Piezo Error = -11.8 V.
17-03-18 01:04:59.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36747 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36747 (-175.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36742 (-175.5 uncal um), Max = 36752 (-175.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:04:59.038 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36747, posNoise = 5, negNoise = 5
17-03-18 01:04:59.038 -07 000000610 INF: Z Motor: After move to -0.176388, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:04:59.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:04:59.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:04:59.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:04:59.038 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:04:59.038 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:04:59.038 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:04:59.038 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:04:59.038 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:04:59.038 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:04:59.048 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:04:59.048 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:04:59.058 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:04:59.058 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:04:59.058 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:04:59.258 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:04:59.558 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:04:59.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:04:59.558 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:04:59.558 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) start.
17-03-18 01:04:59.748 -07 000000462 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:04:59.748 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:04:59.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall
17-03-18 01:05:00.138 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) end. Duration was 580 ms.
17-03-18 01:05:00.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:00.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:00.148 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:05:00.448 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:00.458 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:00.468 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=74.40]
17-03-18 01:05:00.468 -07 000000610 INF: Scanning Z-Position: -0.174388
17-03-18 01:05:00.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 38095, sync = True, waitForSettling = True)
17-03-18 01:05:00.468 -07 000000610 INF: Z Motor: Moving to -0.174388 mm, started at -0.176394 mm, distance = 2.01 um
17-03-18 01:05:00.468 -07 000000610 INF: FPGA: Xmit ZDACW 38095\n [Z Motor]
17-03-18 01:05:00.478 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:05:00.488 -07 000000610 INF: FPGA: 'ZDACW 38095' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:00.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:00.488 -07 000000591 INF: FPGA: Recv ZDACR 38095
17-03-18 01:05:00.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:00.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:00.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:00.648 -07 000000430 INF: FPGA: Recv ZSGSRD 36440
17-03-18 01:05:00.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:00.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:00.658 -07 000000581 INF: FPGA: Recv ZSGSRD 36431
17-03-18 01:05:00.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:00.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:00.668 -07 000000629 INF: FPGA: Recv ZSGSRD 36433
17-03-18 01:05:00.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:00.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:00.678 -07 000000430 INF: FPGA: Recv ZSGSRD 36435
17-03-18 01:05:00.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:00.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:00.688 -07 000000591 INF: FPGA: Recv ZSGSRD 36433
17-03-18 01:05:00.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:00.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:00.698 -07 000000581 INF: FPGA: Recv ZSGSRD 36432
17-03-18 01:05:00.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:00.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:00.708 -07 000000576 INF: FPGA: Recv ZSGSRD 36440
17-03-18 01:05:00.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:00.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:00.718 -07 000000430 INF: FPGA: Recv ZSGSRD 36432
17-03-18 01:05:00.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:00.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:00.728 -07 000000462 INF: FPGA: Recv ZSGSRD 36440
17-03-18 01:05:00.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:00.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:00.738 -07 000000430 INF: FPGA: Recv ZSGSRD 36434
17-03-18 01:05:00.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:00.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:00.748 -07 000000576 INF: FPGA: Recv ZPIEZORD 31041
17-03-18 01:05:00.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:00.758 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.813 V. Piezo Error = -11.8 V.
17-03-18 01:05:00.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36435 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36434 (-173.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36431 (-173.5 uncal um), Max = 36440 (-173.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:05:00.758 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36435, posNoise = 5, negNoise = 4
17-03-18 01:05:00.758 -07 000000610 INF: Z Motor: After move to -0.174388, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:00.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:05:00.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:00.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:00.758 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:00.758 -07 000000462 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:00.758 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:00.758 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:00.758 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:00.758 -07 000000462 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:00.768 -07 000000462 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:00.768 -07 000000462 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:00.778 -07 000000462 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:05:00.778 -07 000000462 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:05:00.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:00.978 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 194
17-03-18 01:05:01.278 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 494
17-03-18 01:05:01.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 494
17-03-18 01:05:01.278 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:01.278 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-18 01:05:01.468 -07 000000430 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:01.468 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:01.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall
17-03-18 01:05:01.868 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:05:01.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:01.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:05:01.868 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-18 01:05:01.968 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:01.978 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:01.988 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=125.68]
17-03-18 01:05:01.988 -07 000000610 INF: Scanning Z-Position: -0.172388
17-03-18 01:05:01.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37658, sync = True, waitForSettling = True)
17-03-18 01:05:01.988 -07 000000610 INF: Z Motor: Moving to -0.172387 mm, started at -0.174390 mm, distance = 2.00 um
17-03-18 01:05:01.988 -07 000000610 INF: FPGA: Xmit ZDACW 37658\n [Z Motor]
17-03-18 01:05:01.988 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:05:01.998 -07 000000610 INF: FPGA: 'ZDACW 37658' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:05:01.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:01.998 -07 000000576 INF: FPGA: Recv ZDACR 37658
17-03-18 01:05:02.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:02.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:02.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:02.158 -07 000000581 INF: FPGA: Recv ZSGSRD 36120
17-03-18 01:05:02.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:02.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:02.168 -07 000000591 INF: FPGA: Recv ZSGSRD 36128
17-03-18 01:05:02.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:02.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:02.178 -07 000000581 INF: FPGA: Recv ZSGSRD 36126
17-03-18 01:05:02.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:02.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:02.188 -07 000000629 INF: FPGA: Recv ZSGSRD 36122
17-03-18 01:05:02.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:02.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:02.198 -07 000000474 INF: FPGA: Recv ZSGSRD 36124
17-03-18 01:05:02.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:02.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:02.208 -07 000000581 INF: FPGA: Recv ZSGSRD 36128
17-03-18 01:05:02.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:02.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:02.218 -07 000000581 INF: FPGA: Recv ZSGSRD 36125
17-03-18 01:05:02.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:02.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:02.228 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:05:02.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:05:02.228 -07 000000581 INF: FPGA: Recv ZSGSRD 36123
17-03-18 01:05:02.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:02.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:02.238 -07 000000581 INF: FPGA: Recv ZSGSRD 36125
17-03-18 01:05:02.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:02.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:02.248 -07 000000581 INF: FPGA: Recv ZSGSRD 36128
17-03-18 01:05:02.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:02.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:02.258 -07 000000581 INF: FPGA: Recv ZPIEZORD 30723
17-03-18 01:05:02.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:02.268 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.746 V. Piezo Error = -11.8 V.
17-03-18 01:05:02.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36125 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36125 (-171.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36120 (-171.5 uncal um), Max = 36128 (-171.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:05:02.278 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36125, posNoise = 3, negNoise = 5
17-03-18 01:05:02.278 -07 000000610 INF: Z Motor: After move to -0.172387, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:02.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 292 ms)
17-03-18 01:05:02.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:02.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:02.278 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:02.288 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:02.288 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:02.288 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:02.288 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:02.288 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:02.288 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:02.288 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:02.298 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:05:02.298 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:05:02.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:02.508 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:02.808 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:02.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:02.808 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:02.808 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:05:02.838 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.974486,
17-03-18 01:05:02.998 -07 000000455 INF: FPGA: Recv @CAMSNAP 688
17-03-18 01:05:02.998 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:02.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 687 ms to get response, and 693 ms overall
17-03-18 01:05:03.388 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:05:03.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:03.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:03.398 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:05:03.598 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:03.608 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:03.618 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=207.00]
17-03-18 01:05:03.618 -07 000000610 INF: Scanning Z-Position: -0.170388
17-03-18 01:05:03.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37221, sync = True, waitForSettling = True)
17-03-18 01:05:03.618 -07 000000610 INF: Z Motor: Moving to -0.170387 mm, started at -0.172398 mm, distance = 2.01 um
17-03-18 01:05:03.618 -07 000000610 INF: FPGA: Xmit ZDACW 37221\n [Z Motor]
17-03-18 01:05:03.618 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:05:03.628 -07 000000610 INF: FPGA: 'ZDACW 37221' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:05:03.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:03.628 -07 000000592 INF: FPGA: Recv ZDACR 37221
17-03-18 01:05:03.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:03.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:03.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:03.788 -07 000000581 INF: FPGA: Recv ZSGSRD 35811
17-03-18 01:05:03.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:03.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:03.798 -07 000000455 INF: FPGA: Recv ZSGSRD 35806
17-03-18 01:05:03.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:03.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:03.808 -07 000000592 INF: FPGA: Recv ZSGSRD 35813
17-03-18 01:05:03.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:03.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:03.818 -07 000000455 INF: FPGA: Recv ZSGSRD 35813
17-03-18 01:05:03.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:03.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:03.828 -07 000000576 INF: FPGA: Recv ZSGSRD 35816
17-03-18 01:05:03.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:03.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:03.838 -07 000000455 INF: FPGA: Recv ZSGSRD 35817
17-03-18 01:05:03.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:03.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:03.848 -07 000000576 INF: FPGA: Recv ZSGSRD 35815
17-03-18 01:05:03.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:03.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:03.858 -07 000000455 INF: FPGA: Recv ZSGSRD 35816
17-03-18 01:05:03.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:03.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:03.868 -07 000000576 INF: FPGA: Recv ZSGSRD 35816
17-03-18 01:05:03.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:03.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:03.878 -07 000000461 INF: FPGA: Recv ZSGSRD 35812
17-03-18 01:05:03.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:03.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:03.888 -07 000000576 INF: FPGA: Recv ZPIEZORD 30394
17-03-18 01:05:03.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:03.898 -07 000000610 INF: Z Motor: Piezo is near 44.9 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -11.9 V.
17-03-18 01:05:03.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35814 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35814 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35806 (-169.5 uncal um), Max = 35817 (-169.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:05:03.898 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35814, posNoise = 3, negNoise = 8
17-03-18 01:05:03.898 -07 000000610 INF: Z Motor: After move to -0.170387, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:03.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:05:03.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:03.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:03.898 -07 000000629 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:03.898 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:03.898 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:03.898 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:03.898 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:05:03.898 -07 000000629 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:03.898 -07 000000629 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:03.898 -07 000000629 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:03.918 -07 000000629 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 01:05:03.918 -07 000000629 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-18 01:05:03.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:04.118 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:04.418 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:04.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:04.418 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:04.418 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) start.
17-03-18 01:05:04.608 -07 000000461 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:04.608 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:04.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall
17-03-18 01:05:05.008 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) end. Duration was 582 ms.
17-03-18 01:05:05.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:05.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:05.008 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:05:05.208 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:05.218 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:05.228 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=129.49]
17-03-18 01:05:05.228 -07 000000610 INF: Scanning Z-Position: -0.168388
17-03-18 01:05:05.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36784, sync = True, waitForSettling = True)
17-03-18 01:05:05.228 -07 000000610 INF: Z Motor: Moving to -0.168386 mm, started at -0.170400 mm, distance = 2.01 um
17-03-18 01:05:05.228 -07 000000610 INF: FPGA: Xmit ZDACW 36784\n [Z Motor]
17-03-18 01:05:05.238 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:05:05.238 -07 000000610 INF: FPGA: 'ZDACW 36784' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:05:05.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:05.238 -07 000000455 INF: FPGA: Recv ZDACR 36784
17-03-18 01:05:05.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:05:05.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:05.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:05.398 -07 000000576 INF: FPGA: Recv ZSGSRD 35497
17-03-18 01:05:05.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:05.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:05.408 -07 000000629 INF: FPGA: Recv ZSGSRD 35502
17-03-18 01:05:05.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:05.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:06.218 -07 000000592 INF: FPGA: Recv ZSGSRD 35504
17-03-18 01:05:06.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 790 ms to get response, and 800 ms overall
17-03-18 01:05:06.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:06.218 -07 000000591 INF: FPGA: Recv ZSGSRD 35509
17-03-18 01:05:06.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:06.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:06.228 -07 000000592 INF: FPGA: Recv ZSGSRD 35503
17-03-18 01:05:06.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:06.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:06.238 -07 000000581 INF: FPGA: Recv ZSGSRD 35501
17-03-18 01:05:06.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:06.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:06.248 -07 000000591 INF: FPGA: Recv ZSGSRD 35503
17-03-18 01:05:06.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:06.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:06.258 -07 000000576 INF: FPGA: Recv ZSGSRD 35504
17-03-18 01:05:06.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:06.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:06.268 -07 000000629 INF: FPGA: Recv ZSGSRD 35507
17-03-18 01:05:06.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:06.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:06.278 -07 000000581 INF: FPGA: Recv ZSGSRD 35502
17-03-18 01:05:06.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:06.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:06.288 -07 000000581 INF: FPGA: Recv ZPIEZORD 30100
17-03-18 01:05:06.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:06.298 -07 000000610 INF: Z Motor: Piezo is near 44.3 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.613 V. Piezo Error = -11.8 V.
17-03-18 01:05:06.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35503 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35503 (-167.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35497 (-167.5 uncal um), Max = 35509 (-167.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:05:06.298 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35503, posNoise = 6, negNoise = 6
17-03-18 01:05:06.298 -07 000000610 INF: Z Motor: After move to -0.168386, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:06.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 1063 ms)
17-03-18 01:05:06.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:06.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:06.298 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:06.298 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:06.298 -07 000000591 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:06.298 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:06.298 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:06.298 -07 000000591 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:06.308 -07 000000591 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:06.308 -07 000000591 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:06.318 -07 000000591 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:05:06.318 -07 000000591 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:05:06.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:06.518 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:06.818 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:06.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:06.818 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:06.818 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-18 01:05:07.008 -07 000000576 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:07.008 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:07.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall
17-03-18 01:05:07.228 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:05:07.398 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 580 ms.
17-03-18 01:05:07.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:07.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:07.408 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:05:07.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:05:07.608 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:07.618 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:07.628 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=73.40]
17-03-18 01:05:07.628 -07 000000610 INF: Scanning Z-Position: -0.166388
17-03-18 01:05:07.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36347, sync = True, waitForSettling = True)
17-03-18 01:05:07.628 -07 000000610 INF: Z Motor: Moving to -0.166386 mm, started at -0.168402 mm, distance = 2.02 um
17-03-18 01:05:07.628 -07 000000610 INF: FPGA: Xmit ZDACW 36347\n [Z Motor]
17-03-18 01:05:07.628 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:05:07.638 -07 000000610 INF: FPGA: 'ZDACW 36347' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:05:07.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:07.638 -07 000000592 INF: FPGA: Recv ZDACR 36347
17-03-18 01:05:07.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:07.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:07.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:07.798 -07 000000474 INF: FPGA: Recv ZSGSRD 35196
17-03-18 01:05:07.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:07.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:07.808 -07 000000591 INF: FPGA: Recv ZSGSRD 35190
17-03-18 01:05:07.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:07.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:07.818 -07 000000591 INF: FPGA: Recv ZSGSRD 35190
17-03-18 01:05:07.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:07.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:07.828 -07 000000474 INF: FPGA: Recv ZSGSRD 35189
17-03-18 01:05:07.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:07.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:07.838 -07 000000474 INF: FPGA: Recv ZSGSRD 35196
17-03-18 01:05:07.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:07.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:07.848 -07 000000591 INF: FPGA: Recv ZSGSRD 35189
17-03-18 01:05:07.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:07.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:07.858 -07 000000591 INF: FPGA: Recv ZSGSRD 35189
17-03-18 01:05:07.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:07.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:07.868 -07 000000591 INF: FPGA: Recv ZSGSRD 35193
17-03-18 01:05:07.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:07.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:07.888 -07 000000591 INF: FPGA: Recv ZSGSRD 35192
17-03-18 01:05:07.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:05:07.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:07.898 -07 000000591 INF: FPGA: Recv ZSGSRD 35185
17-03-18 01:05:07.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:07.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:07.908 -07 000000629 INF: FPGA: Recv ZPIEZORD 29801
17-03-18 01:05:07.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:07.918 -07 000000610 INF: Z Motor: Piezo is near 43.7 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.546 V. Piezo Error = -11.8 V.
17-03-18 01:05:07.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35191 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35190 (-165.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35185 (-165.5 uncal um), Max = 35196 (-165.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:05:07.918 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35191, posNoise = 5, negNoise = 6
17-03-18 01:05:07.918 -07 000000610 INF: Z Motor: After move to -0.166386, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:07.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 01:05:07.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:07.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:07.918 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:07.918 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:07.918 -07 000000591 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:07.918 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:07.918 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:07.918 -07 000000591 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:07.928 -07 000000591 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:07.928 -07 000000591 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:07.938 -07 000000591 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:05:07.938 -07 000000591 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:05:07.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:08.138 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:08.198 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.990831,
17-03-18 01:05:08.438 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:08.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:08.438 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:08.438 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:05:08.628 -07 000000591 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:08.628 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:08.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 682 ms to get response, and 689 ms overall
17-03-18 01:05:09.018 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 582 ms.
17-03-18 01:05:09.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:09.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:09.028 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-18 01:05:09.228 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:09.238 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:09.248 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=57.56]
17-03-18 01:05:09.248 -07 000000610 INF: Scanning Z-Position: -0.164388
17-03-18 01:05:09.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35911, sync = True, waitForSettling = True)
17-03-18 01:05:09.248 -07 000000610 INF: Z Motor: Moving to -0.164390 mm, started at -0.166398 mm, distance = 2.01 um
17-03-18 01:05:09.248 -07 000000610 INF: FPGA: Xmit ZDACW 35911\n [Z Motor]
17-03-18 01:05:09.248 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:05:09.258 -07 000000610 INF: FPGA: 'ZDACW 35911' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:05:09.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:09.258 -07 000000629 INF: FPGA: Recv ZDACR 35911
17-03-18 01:05:09.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:09.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:09.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:09.418 -07 000000430 INF: FPGA: Recv ZSGSRD 34880
17-03-18 01:05:09.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:09.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:09.428 -07 000000592 INF: FPGA: Recv ZSGSRD 34881
17-03-18 01:05:09.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:09.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:09.438 -07 000000629 INF: FPGA: Recv ZSGSRD 34877
17-03-18 01:05:09.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:09.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:09.448 -07 000000592 INF: FPGA: Recv ZSGSRD 34881
17-03-18 01:05:09.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:09.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:09.458 -07 000000474 INF: FPGA: Recv ZSGSRD 34877
17-03-18 01:05:09.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:09.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:09.468 -07 000000462 INF: FPGA: Recv ZSGSRD 34880
17-03-18 01:05:09.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:09.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:09.478 -07 000000591 INF: FPGA: Recv ZSGSRD 34876
17-03-18 01:05:09.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:09.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:09.488 -07 000000430 INF: FPGA: Recv ZSGSRD 34877
17-03-18 01:05:09.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:05:09.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:09.498 -07 000000592 INF: FPGA: Recv ZSGSRD 34882
17-03-18 01:05:09.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:09.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:09.508 -07 000000430 INF: FPGA: Recv ZSGSRD 34876
17-03-18 01:05:09.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:09.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:09.518 -07 000000474 INF: FPGA: Recv ZPIEZORD 29471
17-03-18 01:05:09.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:09.528 -07 000000610 INF: Z Motor: Piezo is near 43.0 V (nominally 0 to 100 V), expect near 54.8 V, since DAC is at 5.480 V. Piezo Error = -11.8 V.
17-03-18 01:05:09.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.4 um, Read 10 ADC samples: Avg = 34879 (-163.5 uncal um), Error = 0.9 uncal um, Median = 34878 (-163.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 34876 (-163.5 uncal um), Max = 34882 (-163.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:05:09.528 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34879, posNoise = 3, negNoise = 3
17-03-18 01:05:09.528 -07 000000610 INF: Z Motor: After move to -0.164390, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:09.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:05:09.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:09.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:09.528 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:09.528 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:09.528 -07 000000474 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:09.528 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:09.528 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:09.528 -07 000000474 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:09.528 -07 000000474 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:09.528 -07 000000474 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:09.548 -07 000000474 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:05:09.548 -07 000000474 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:05:09.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:09.748 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:10.048 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:10.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:10.048 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:10.048 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) start.
17-03-18 01:05:10.238 -07 000000462 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:10.238 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:10.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall
17-03-18 01:05:10.628 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:05:10.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:10.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:10.638 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:05:10.838 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:10.848 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:10.858 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=52.96]
17-03-18 01:05:10.858 -07 000000610 INF: Scanning Z-Position: -0.162388
17-03-18 01:05:10.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35474, sync = True, waitForSettling = True)
17-03-18 01:05:10.858 -07 000000610 INF: Z Motor: Moving to -0.162390 mm, started at -0.164393 mm, distance = 2.00 um
17-03-18 01:05:10.858 -07 000000610 INF: FPGA: Xmit ZDACW 35474\n [Z Motor]
17-03-18 01:05:10.868 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:05:10.868 -07 000000610 INF: FPGA: 'ZDACW 35474' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:05:10.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:10.868 -07 000000629 INF: FPGA: Recv ZDACR 35474
17-03-18 01:05:10.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:10.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:11.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:11.028 -07 000000462 INF: FPGA: Recv ZSGSRD 34572
17-03-18 01:05:11.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:11.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:11.038 -07 000000591 INF: FPGA: Recv ZSGSRD 34569
17-03-18 01:05:11.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:11.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:11.048 -07 000000430 INF: FPGA: Recv ZSGSRD 34566
17-03-18 01:05:11.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:11.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:11.058 -07 000000591 INF: FPGA: Recv ZSGSRD 34571
17-03-18 01:05:11.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:11.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:11.068 -07 000000592 INF: FPGA: Recv ZSGSRD 34569
17-03-18 01:05:11.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:11.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:11.078 -07 000000592 INF: FPGA: Recv ZSGSRD 34571
17-03-18 01:05:11.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:11.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:11.088 -07 000000592 INF: FPGA: Recv ZSGSRD 34567
17-03-18 01:05:11.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:11.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:11.098 -07 000000430 INF: FPGA: Recv ZSGSRD 34566
17-03-18 01:05:11.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:11.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:11.108 -07 000000629 INF: FPGA: Recv ZSGSRD 34575
17-03-18 01:05:11.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:11.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:11.118 -07 000000592 INF: FPGA: Recv ZSGSRD 34566
17-03-18 01:05:11.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:11.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:11.128 -07 000000592 INF: FPGA: Recv ZPIEZORD 29163
17-03-18 01:05:11.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:11.138 -07 000000610 INF: Z Motor: Piezo is near 42.3 V (nominally 0 to 100 V), expect near 54.1 V, since DAC is at 5.413 V. Piezo Error = -11.8 V.
17-03-18 01:05:11.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -162.4 um, Read 10 ADC samples: Avg = 34569 (-161.5 uncal um), Error = 0.8 uncal um, Median = 34569 (-161.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34566 (-161.5 uncal um), Max = 34575 (-161.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:05:11.138 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34569, posNoise = 6, negNoise = 3
17-03-18 01:05:11.138 -07 000000610 INF: Z Motor: After move to -0.162390, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:11.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 01:05:11.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:11.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:11.138 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:11.138 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:11.138 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:11.138 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:11.148 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:11.148 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:11.148 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:11.148 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:11.158 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 7 ms.
17-03-18 01:05:11.158 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 12 ms.
17-03-18 01:05:11.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:11.358 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:11.658 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:11.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:11.658 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:11.658 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-18 01:05:11.848 -07 000000430 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:11.848 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:11.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall
17-03-18 01:05:12.228 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:05:12.238 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:05:12.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:12.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:12.248 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:05:12.338 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:05:12.348 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:12.358 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:12.368 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=50.12]
17-03-18 01:05:12.368 -07 000000610 INF: Scanning Z-Position: -0.160388
17-03-18 01:05:12.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35037, sync = True, waitForSettling = True)
17-03-18 01:05:12.368 -07 000000610 INF: Z Motor: Moving to -0.160389 mm, started at -0.162402 mm, distance = 2.01 um
17-03-18 01:05:12.368 -07 000000610 INF: FPGA: Xmit ZDACW 35037\n [Z Motor]
17-03-18 01:05:12.368 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:05:12.378 -07 000000610 INF: FPGA: 'ZDACW 35037' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:05:12.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:12.378 -07 000000430 INF: FPGA: Recv ZDACR 35037
17-03-18 01:05:12.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:12.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:12.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:12.538 -07 000000592 INF: FPGA: Recv ZSGSRD 34254
17-03-18 01:05:12.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:12.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:12.548 -07 000000430 INF: FPGA: Recv ZSGSRD 34257
17-03-18 01:05:12.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:12.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:12.558 -07 000000430 INF: FPGA: Recv ZSGSRD 34259
17-03-18 01:05:12.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:12.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:12.568 -07 000000430 INF: FPGA: Recv ZSGSRD 34251
17-03-18 01:05:12.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:12.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:12.578 -07 000000430 INF: FPGA: Recv ZSGSRD 34250
17-03-18 01:05:12.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:12.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:12.588 -07 000000592 INF: FPGA: Recv ZSGSRD 34256
17-03-18 01:05:12.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:12.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:12.598 -07 000000461 INF: FPGA: Recv ZSGSRD 34264
17-03-18 01:05:12.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:12.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:12.608 -07 000000430 INF: FPGA: Recv ZSGSRD 34256
17-03-18 01:05:12.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:12.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:12.618 -07 000000430 INF: FPGA: Recv ZSGSRD 34258
17-03-18 01:05:12.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:12.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:12.628 -07 000000455 INF: FPGA: Recv ZSGSRD 34255
17-03-18 01:05:12.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:12.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:12.638 -07 000000455 INF: FPGA: Recv ZPIEZORD 28856
17-03-18 01:05:12.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:12.648 -07 000000610 INF: Z Motor: Piezo is near 41.6 V (nominally 0 to 100 V), expect near 53.5 V, since DAC is at 5.346 V. Piezo Error = -11.8 V.
17-03-18 01:05:12.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -160.4 um, Read 10 ADC samples: Avg = 34256 (-159.5 uncal um), Error = 0.8 uncal um, Median = 34256 (-159.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 34250 (-159.5 uncal um), Max = 34264 (-159.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:05:12.648 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34256, posNoise = 8, negNoise = 6
17-03-18 01:05:12.648 -07 000000610 INF: Z Motor: After move to -0.160389, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:12.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:05:12.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:12.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:12.648 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:12.648 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:12.648 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:12.648 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:12.648 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:05:12.648 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:12.658 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:12.658 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:12.668 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:05:12.668 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-18 01:05:12.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:12.868 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:13.168 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:13.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:13.168 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:13.168 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:05:13.358 -07 000000430 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:13.358 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:13.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 682 ms to get response, and 689 ms overall
17-03-18 01:05:13.558 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.018051,
17-03-18 01:05:13.748 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 578 ms.
17-03-18 01:05:13.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:13.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:13.758 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms.
17-03-18 01:05:13.858 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:13.868 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:13.878 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=50.13]
17-03-18 01:05:13.878 -07 000000610 INF: Scanning Z-Position: -0.158388
17-03-18 01:05:13.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 34600, sync = True, waitForSettling = True)
17-03-18 01:05:13.878 -07 000000610 INF: Z Motor: Moving to -0.158389 mm, started at -0.160391 mm, distance = 2.00 um
17-03-18 01:05:13.878 -07 000000610 INF: FPGA: Xmit ZDACW 34600\n [Z Motor]
17-03-18 01:05:13.878 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:05:13.888 -07 000000610 INF: FPGA: 'ZDACW 34600' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:05:13.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:13.888 -07 000000581 INF: FPGA: Recv ZDACR 34600
17-03-18 01:05:13.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:13.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:14.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:14.048 -07 000000455 INF: FPGA: Recv ZSGSRD 33946
17-03-18 01:05:14.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:14.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:14.058 -07 000000581 INF: FPGA: Recv ZSGSRD 33950
17-03-18 01:05:14.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:14.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:14.068 -07 000000455 INF: FPGA: Recv ZSGSRD 33950
17-03-18 01:05:14.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:14.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:14.078 -07 000000581 INF: FPGA: Recv ZSGSRD 33940
17-03-18 01:05:14.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:14.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:14.088 -07 000000592 INF: FPGA: Recv ZSGSRD 33942
17-03-18 01:05:14.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:14.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:14.098 -07 000000461 INF: FPGA: Recv ZSGSRD 33953
17-03-18 01:05:14.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:14.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:14.108 -07 000000581 INF: FPGA: Recv ZSGSRD 33944
17-03-18 01:05:14.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:14.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:14.118 -07 000000576 INF: FPGA: Recv ZSGSRD 33945
17-03-18 01:05:14.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:14.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:14.128 -07 000000430 INF: FPGA: Recv ZSGSRD 33946
17-03-18 01:05:14.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:05:14.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:14.138 -07 000000581 INF: FPGA: Recv ZSGSRD 33946
17-03-18 01:05:14.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:14.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:14.148 -07 000000592 INF: FPGA: Recv ZPIEZORD 28575
17-03-18 01:05:14.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:14.158 -07 000000610 INF: Z Motor: Piezo is near 41.0 V (nominally 0 to 100 V), expect near 52.8 V, since DAC is at 5.280 V. Piezo Error = -11.8 V.
17-03-18 01:05:14.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -158.4 um, Read 10 ADC samples: Avg = 33946 (-157.6 uncal um), Error = 0.8 uncal um, Median = 33946 (-157.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 33940 (-157.5 uncal um), Max = 33953 (-157.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:05:14.158 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33946, posNoise = 7, negNoise = 6
17-03-18 01:05:14.158 -07 000000610 INF: Z Motor: After move to -0.158389, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:14.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:05:14.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:14.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:14.158 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:14.158 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:14.158 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:14.158 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:14.158 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:14.158 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:14.168 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:05:14.168 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:14.178 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:05:14.178 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-18 01:05:14.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:14.378 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 194
17-03-18 01:05:14.678 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 495
17-03-18 01:05:14.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 495
17-03-18 01:05:14.678 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:14.688 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) start.
17-03-18 01:05:14.868 -07 000000581 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:14.868 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:14.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 687 ms to get response, and 689 ms overall
17-03-18 01:05:15.268 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) end. Duration was 580 ms.
17-03-18 01:05:15.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:15.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:15.268 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:05:15.568 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:15.578 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:15.588 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=49.79]
17-03-18 01:05:15.588 -07 000000610 INF: Scanning Z-Position: -0.156388
17-03-18 01:05:15.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 34163, sync = True, waitForSettling = True)
17-03-18 01:05:15.588 -07 000000610 INF: Z Motor: Moving to -0.156388 mm, started at -0.158400 mm, distance = 2.01 um
17-03-18 01:05:15.588 -07 000000610 INF: FPGA: Xmit ZDACW 34163\n [Z Motor]
17-03-18 01:05:16.138 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:05:16.138 -07 000000610 INF: FPGA: 'ZDACW 34163' command took 0 ms to send, 540 ms to get response, and 543 ms overall
17-03-18 01:05:16.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:16.138 -07 000000576 INF: FPGA: Recv ZDACR 34163
17-03-18 01:05:16.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:16.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:16.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:16.298 -07 000000455 INF: FPGA: Recv ZSGSRD 33632
17-03-18 01:05:16.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:16.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:16.308 -07 000000576 INF: FPGA: Recv ZSGSRD 33638
17-03-18 01:05:16.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:16.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:16.318 -07 000000461 INF: FPGA: Recv ZSGSRD 33636
17-03-18 01:05:16.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:16.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:16.328 -07 000000455 INF: FPGA: Recv ZSGSRD 33633
17-03-18 01:05:16.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:16.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:16.338 -07 000000592 INF: FPGA: Recv ZSGSRD 33631
17-03-18 01:05:16.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:16.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:16.348 -07 000000430 INF: FPGA: Recv ZSGSRD 33638
17-03-18 01:05:16.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:16.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:16.358 -07 000000592 INF: FPGA: Recv ZSGSRD 33640
17-03-18 01:05:16.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:16.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:16.368 -07 000000474 INF: FPGA: Recv ZSGSRD 33632
17-03-18 01:05:16.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:16.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:16.378 -07 000000592 INF: FPGA: Recv ZSGSRD 33631
17-03-18 01:05:16.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:16.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:16.388 -07 000000455 INF: FPGA: Recv ZSGSRD 33636
17-03-18 01:05:16.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:16.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:16.398 -07 000000474 INF: FPGA: Recv ZPIEZORD 28308
17-03-18 01:05:16.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:16.408 -07 000000610 INF: Z Motor: Piezo is near 40.5 V (nominally 0 to 100 V), expect near 52.1 V, since DAC is at 5.213 V. Piezo Error = -11.7 V.
17-03-18 01:05:16.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -156.4 um, Read 10 ADC samples: Avg = 33635 (-155.6 uncal um), Error = 0.8 uncal um, Median = 33634 (-155.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 33631 (-155.5 uncal um), Max = 33640 (-155.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:05:16.408 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33635, posNoise = 5, negNoise = 4
17-03-18 01:05:16.408 -07 000000610 INF: Z Motor: After move to -0.156388, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:16.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 814 ms)
17-03-18 01:05:16.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:16.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:16.408 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:16.408 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:16.408 -07 000000430 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:16.408 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:16.418 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:16.418 -07 000000430 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:16.418 -07 000000430 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:16.418 -07 000000430 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:16.428 -07 000000430 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:05:16.428 -07 000000430 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:05:16.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:16.628 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:16.928 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:16.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:16.928 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:16.938 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-18 01:05:17.118 -07 000000592 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:17.118 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:17.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 689 ms overall
17-03-18 01:05:17.228 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:05:17.518 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 583 ms.
17-03-18 01:05:17.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:17.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:17.518 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-18 01:05:17.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:05:17.618 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:17.628 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:17.638 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=48.13]
17-03-18 01:05:17.638 -07 000000610 INF: Scanning Z-Position: -0.154388
17-03-18 01:05:17.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 33726, sync = True, waitForSettling = True)
17-03-18 01:05:17.638 -07 000000610 INF: Z Motor: Moving to -0.154388 mm, started at -0.156402 mm, distance = 2.01 um
17-03-18 01:05:17.638 -07 000000610 INF: FPGA: Xmit ZDACW 33726\n [Z Motor]
17-03-18 01:05:17.638 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:05:17.648 -07 000000610 INF: FPGA: 'ZDACW 33726' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:05:17.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:17.648 -07 000000592 INF: FPGA: Recv ZDACR 33726
17-03-18 01:05:17.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:17.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:17.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:17.808 -07 000000430 INF: FPGA: Recv ZSGSRD 33326
17-03-18 01:05:17.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:17.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:17.818 -07 000000455 INF: FPGA: Recv ZSGSRD 33326
17-03-18 01:05:17.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:17.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:17.828 -07 000000430 INF: FPGA: Recv ZSGSRD 33322
17-03-18 01:05:17.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:17.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:17.838 -07 000000455 INF: FPGA: Recv ZSGSRD 33320
17-03-18 01:05:17.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:17.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:17.848 -07 000000592 INF: FPGA: Recv ZSGSRD 33320
17-03-18 01:05:17.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:17.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:17.858 -07 000000461 INF: FPGA: Recv ZSGSRD 33328
17-03-18 01:05:17.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:17.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:17.868 -07 000000592 INF: FPGA: Recv ZSGSRD 33319
17-03-18 01:05:17.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:17.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:17.878 -07 000000461 INF: FPGA: Recv ZSGSRD 33323
17-03-18 01:05:17.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:17.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:17.888 -07 000000592 INF: FPGA: Recv ZSGSRD 33324
17-03-18 01:05:17.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:17.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:17.898 -07 000000430 INF: FPGA: Recv ZSGSRD 33325
17-03-18 01:05:17.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:17.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:17.908 -07 000000474 INF: FPGA: Recv ZPIEZORD 27990
17-03-18 01:05:17.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:17.918 -07 000000610 INF: Z Motor: Piezo is near 39.8 V (nominally 0 to 100 V), expect near 51.5 V, since DAC is at 5.146 V. Piezo Error = -11.7 V.
17-03-18 01:05:17.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -154.4 um, Read 10 ADC samples: Avg = 33323 (-153.6 uncal um), Error = 0.8 uncal um, Median = 33324 (-153.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 33319 (-153.5 uncal um), Max = 33328 (-153.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:05:17.918 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33323, posNoise = 5, negNoise = 4
17-03-18 01:05:17.918 -07 000000610 INF: Z Motor: After move to -0.154388, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:17.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:05:17.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:17.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:17.918 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:17.918 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:17.918 -07 000000576 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:17.918 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:17.918 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:17.918 -07 000000576 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:17.928 -07 000000576 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:05:17.928 -07 000000576 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:17.938 -07 000000576 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:05:17.938 -07 000000576 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-18 01:05:17.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:18.138 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:18.438 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:18.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:18.438 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:18.438 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:05:18.628 -07 000000474 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:18.628 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:18.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall
17-03-18 01:05:18.918 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.020806,
17-03-18 01:05:19.028 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:05:19.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:19.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:19.028 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:05:19.128 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:19.138 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:19.148 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=47.21]
17-03-18 01:05:19.148 -07 000000610 INF: Scanning Z-Position: -0.152388
17-03-18 01:05:19.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 33289, sync = True, waitForSettling = True)
17-03-18 01:05:19.148 -07 000000610 INF: Z Motor: Moving to -0.152387 mm, started at -0.154397 mm, distance = 2.01 um
17-03-18 01:05:19.148 -07 000000610 INF: FPGA: Xmit ZDACW 33289\n [Z Motor]
17-03-18 01:05:19.148 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:05:19.158 -07 000000610 INF: FPGA: 'ZDACW 33289' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:05:19.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:19.158 -07 000000592 INF: FPGA: Recv ZDACR 33289
17-03-18 01:05:19.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:19.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:19.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:19.318 -07 000000576 INF: FPGA: Recv ZSGSRD 33008
17-03-18 01:05:19.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:19.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:19.328 -07 000000474 INF: FPGA: Recv ZSGSRD 33011
17-03-18 01:05:19.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:19.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:19.338 -07 000000592 INF: FPGA: Recv ZSGSRD 33010
17-03-18 01:05:19.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:19.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:19.348 -07 000000474 INF: FPGA: Recv ZSGSRD 33010
17-03-18 01:05:19.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:19.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:19.358 -07 000000592 INF: FPGA: Recv ZSGSRD 33008
17-03-18 01:05:19.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:19.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:19.368 -07 000000461 INF: FPGA: Recv ZSGSRD 33012
17-03-18 01:05:19.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:19.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:19.378 -07 000000576 INF: FPGA: Recv ZSGSRD 33004
17-03-18 01:05:19.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:19.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:19.388 -07 000000581 INF: FPGA: Recv ZSGSRD 33017
17-03-18 01:05:19.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:19.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:19.398 -07 000000581 INF: FPGA: Recv ZSGSRD 33017
17-03-18 01:05:19.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:19.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:19.408 -07 000000461 INF: FPGA: Recv ZSGSRD 33012
17-03-18 01:05:19.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:19.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:19.418 -07 000000581 INF: FPGA: Recv ZPIEZORD 27715
17-03-18 01:05:19.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:19.428 -07 000000610 INF: Z Motor: Piezo is near 39.2 V (nominally 0 to 100 V), expect near 50.8 V, since DAC is at 5.080 V. Piezo Error = -11.6 V.
17-03-18 01:05:19.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -152.4 um, Read 10 ADC samples: Avg = 33011 (-151.6 uncal um), Error = 0.8 uncal um, Median = 33010 (-151.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 33004 (-151.5 uncal um), Max = 33017 (-151.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:05:19.428 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33011, posNoise = 6, negNoise = 7
17-03-18 01:05:19.428 -07 000000610 INF: Z Motor: After move to -0.152387, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:19.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:05:19.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:19.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:19.428 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:19.428 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:19.428 -07 000000611 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:19.428 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:19.428 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:19.428 -07 000000611 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:19.438 -07 000000611 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:19.438 -07 000000611 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:19.448 -07 000000611 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:05:19.448 -07 000000611 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:05:19.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:19.648 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:19.948 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:19.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:19.948 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:19.948 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) start.
17-03-18 01:05:20.138 -07 000000455 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:20.138 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:20.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall
17-03-18 01:05:20.538 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) end. Duration was 582 ms.
17-03-18 01:05:20.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:20.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:20.538 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-18 01:05:20.738 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:20.758 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:20.758 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=45.99]
17-03-18 01:05:20.758 -07 000000610 INF: Scanning Z-Position: -0.150388
17-03-18 01:05:20.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 32852, sync = True, waitForSettling = True)
17-03-18 01:05:20.758 -07 000000610 INF: Z Motor: Moving to -0.150387 mm, started at -0.152393 mm, distance = 2.01 um
17-03-18 01:05:20.768 -07 000000610 INF: FPGA: Xmit ZDACW 32852\n [Z Motor]
17-03-18 01:05:20.768 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:05:20.778 -07 000000610 INF: FPGA: 'ZDACW 32852' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:20.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:20.778 -07 000000462 INF: FPGA: Recv ZDACR 32852
17-03-18 01:05:20.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:20.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:20.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:20.938 -07 000000461 INF: FPGA: Recv ZSGSRD 32699
17-03-18 01:05:20.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:20.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:20.948 -07 000000462 INF: FPGA: Recv ZSGSRD 32701
17-03-18 01:05:20.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:20.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:20.958 -07 000000461 INF: FPGA: Recv ZSGSRD 32702
17-03-18 01:05:20.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:20.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:20.968 -07 000000462 INF: FPGA: Recv ZSGSRD 32698
17-03-18 01:05:20.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:20.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:20.978 -07 000000591 INF: FPGA: Recv ZSGSRD 32701
17-03-18 01:05:20.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:20.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:20.988 -07 000000461 INF: FPGA: Recv ZSGSRD 32703
17-03-18 01:05:20.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:20.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:20.998 -07 000000579 INF: FPGA: Recv ZSGSRD 32697
17-03-18 01:05:21.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:21.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:21.008 -07 000000462 INF: FPGA: Recv ZSGSRD 32702
17-03-18 01:05:21.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:21.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:21.018 -07 000000629 INF: FPGA: Recv ZSGSRD 32699
17-03-18 01:05:21.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:21.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:21.028 -07 000000455 INF: FPGA: Recv ZSGSRD 32697
17-03-18 01:05:21.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:21.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:21.038 -07 000000576 INF: FPGA: Recv ZPIEZORD 27407
17-03-18 01:05:21.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:21.048 -07 000000610 INF: Z Motor: Piezo is near 38.5 V (nominally 0 to 100 V), expect near 50.1 V, since DAC is at 5.013 V. Piezo Error = -11.6 V.
17-03-18 01:05:21.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -150.4 um, Read 10 ADC samples: Avg = 32700 (-149.6 uncal um), Error = 0.8 uncal um, Median = 32700 (-149.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 32697 (-149.5 uncal um), Max = 32703 (-149.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:05:21.048 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32700, posNoise = 3, negNoise = 3
17-03-18 01:05:21.048 -07 000000610 INF: Z Motor: After move to -0.150387, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:21.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:05:21.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:21.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:21.048 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:21.048 -07 000000629 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:21.048 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:21.048 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:21.058 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:21.058 -07 000000629 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:21.058 -07 000000629 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:21.058 -07 000000629 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:21.068 -07 000000629 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:05:21.068 -07 000000629 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:05:21.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:21.268 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:21.568 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:21.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:21.568 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:21.578 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-18 01:05:21.758 -07 000000462 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:21.758 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:21.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall
17-03-18 01:05:22.158 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 580 ms.
17-03-18 01:05:22.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:22.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:22.158 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:05:22.228 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:05:22.238 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:05:22.258 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:22.268 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:22.278 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=44.55]
17-03-18 01:05:22.278 -07 000000610 INF: Scanning Z-Position: -0.148388
17-03-18 01:05:22.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 32415, sync = True, waitForSettling = True)
17-03-18 01:05:22.278 -07 000000610 INF: Z Motor: Moving to -0.148386 mm, started at -0.150395 mm, distance = 2.01 um
17-03-18 01:05:22.278 -07 000000610 INF: FPGA: Xmit ZDACW 32415\n [Z Motor]
17-03-18 01:05:22.278 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:05:22.288 -07 000000610 INF: FPGA: 'ZDACW 32415' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:05:22.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:22.288 -07 000000576 INF: FPGA: Recv ZDACR 32415
17-03-18 01:05:22.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:22.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:22.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:22.448 -07 000000629 INF: FPGA: Recv ZSGSRD 32388
17-03-18 01:05:22.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:22.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:22.458 -07 000000455 INF: FPGA: Recv ZSGSRD 32393
17-03-18 01:05:22.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:22.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:22.468 -07 000000462 INF: FPGA: Recv ZSGSRD 32390
17-03-18 01:05:22.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:22.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:22.478 -07 000000462 INF: FPGA: Recv ZSGSRD 32385
17-03-18 01:05:22.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:22.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:22.488 -07 000000462 INF: FPGA: Recv ZSGSRD 32391
17-03-18 01:05:22.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:22.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:22.498 -07 000000462 INF: FPGA: Recv ZSGSRD 32386
17-03-18 01:05:22.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:22.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:22.508 -07 000000576 INF: FPGA: Recv ZSGSRD 32391
17-03-18 01:05:22.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:22.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:22.518 -07 000000455 INF: FPGA: Recv ZSGSRD 32382
17-03-18 01:05:22.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:22.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:22.528 -07 000000455 INF: FPGA: Recv ZSGSRD 32386
17-03-18 01:05:22.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:22.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:22.538 -07 000000629 INF: FPGA: Recv ZSGSRD 32391
17-03-18 01:05:22.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:22.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:22.548 -07 000000455 INF: FPGA: Recv ZPIEZORD 27109
17-03-18 01:05:22.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:22.558 -07 000000610 INF: Z Motor: Piezo is near 37.9 V (nominally 0 to 100 V), expect near 49.5 V, since DAC is at 4.946 V. Piezo Error = -11.6 V.
17-03-18 01:05:22.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -148.4 um, Read 10 ADC samples: Avg = 32388 (-147.6 uncal um), Error = 0.8 uncal um, Median = 32389 (-147.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 32382 (-147.5 uncal um), Max = 32393 (-147.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:05:22.558 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32388, posNoise = 5, negNoise = 6
17-03-18 01:05:22.558 -07 000000610 INF: Z Motor: After move to -0.148386, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:22.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:05:22.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:22.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:22.558 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:22.558 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:22.558 -07 000000629 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:22.558 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:22.558 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:22.558 -07 000000629 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:22.568 -07 000000629 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:05:22.568 -07 000000629 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:22.578 -07 000000629 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:05:22.578 -07 000000629 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:05:22.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:22.778 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:23.078 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:23.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:23.078 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:23.088 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:05:23.268 -07 000000474 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:23.268 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:23.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 689 ms overall
17-03-18 01:05:23.668 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 580 ms.
17-03-18 01:05:23.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:23.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:23.668 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:05:23.768 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:23.778 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:23.788 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=44.38]
17-03-18 01:05:23.788 -07 000000610 INF: Scanning Z-Position: -0.146388
17-03-18 01:05:23.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 31978, sync = True, waitForSettling = True)
17-03-18 01:05:23.788 -07 000000610 INF: Z Motor: Moving to -0.146386 mm, started at -0.148391 mm, distance = 2.00 um
17-03-18 01:05:23.788 -07 000000610 INF: FPGA: Xmit ZDACW 31978\n [Z Motor]
17-03-18 01:05:23.788 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:05:23.798 -07 000000610 INF: FPGA: 'ZDACW 31978' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:05:23.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:23.798 -07 000000474 INF: FPGA: Recv ZDACR 31978
17-03-18 01:05:23.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:23.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:23.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:23.958 -07 000000455 INF: FPGA: Recv ZSGSRD 32078
17-03-18 01:05:23.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:23.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:23.978 -07 000000474 INF: FPGA: Recv ZSGSRD 32077
17-03-18 01:05:23.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:05:23.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:23.988 -07 000000581 INF: FPGA: Recv ZSGSRD 32072
17-03-18 01:05:23.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:23.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:23.998 -07 000000455 INF: FPGA: Recv ZSGSRD 32079
17-03-18 01:05:24.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:24.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:24.008 -07 000000581 INF: FPGA: Recv ZSGSRD 32076
17-03-18 01:05:24.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:24.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:24.018 -07 000000455 INF: FPGA: Recv ZSGSRD 32075
17-03-18 01:05:24.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:24.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:24.028 -07 000000576 INF: FPGA: Recv ZSGSRD 32079
17-03-18 01:05:24.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:24.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:24.038 -07 000000629 INF: FPGA: Recv ZSGSRD 32079
17-03-18 01:05:24.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:24.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:24.048 -07 000000474 INF: FPGA: Recv ZSGSRD 32076
17-03-18 01:05:24.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:24.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:24.058 -07 000000462 INF: FPGA: Recv ZSGSRD 32079
17-03-18 01:05:24.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:24.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:24.068 -07 000000474 INF: FPGA: Recv ZPIEZORD 26846
17-03-18 01:05:24.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:24.078 -07 000000610 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 48.8 V, since DAC is at 4.880 V. Piezo Error = -11.4 V.
17-03-18 01:05:24.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -146.4 um, Read 10 ADC samples: Avg = 32077 (-145.6 uncal um), Error = 0.8 uncal um, Median = 32078 (-145.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 32072 (-145.5 uncal um), Max = 32079 (-145.6 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:05:24.078 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32077, posNoise = 2, negNoise = 5
17-03-18 01:05:24.078 -07 000000610 INF: Z Motor: After move to -0.146386, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:24.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 01:05:24.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:24.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:24.078 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:24.078 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:24.078 -07 000000474 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:24.078 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:24.078 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:24.078 -07 000000474 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:24.088 -07 000000474 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:24.088 -07 000000474 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:24.098 -07 000000474 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:05:24.098 -07 000000474 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:05:24.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:24.288 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.004458,
17-03-18 01:05:24.298 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:24.598 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:24.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:24.598 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:24.608 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) start.
17-03-18 01:05:24.788 -07 000000629 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:24.788 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:24.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 688 ms to get response, and 692 ms overall
17-03-18 01:05:25.188 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) end. Duration was 582 ms.
17-03-18 01:05:25.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:25.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:25.188 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-18 01:05:25.488 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:25.498 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:25.508 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=43.80]
17-03-18 01:05:25.508 -07 000000610 INF: Scanning Z-Position: -0.144388
17-03-18 01:05:25.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 31542, sync = True, waitForSettling = True)
17-03-18 01:05:25.508 -07 000000610 INF: Z Motor: Moving to -0.144390 mm, started at -0.146393 mm, distance = 2.00 um
17-03-18 01:05:25.508 -07 000000610 INF: FPGA: Xmit ZDACW 31542\n [Z Motor]
17-03-18 01:05:25.518 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:05:25.518 -07 000000610 INF: FPGA: 'ZDACW 31542' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:05:25.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:25.518 -07 000000462 INF: FPGA: Recv ZDACR 31542
17-03-18 01:05:25.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:25.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:25.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:25.678 -07 000000474 INF: FPGA: Recv ZSGSRD 31767
17-03-18 01:05:25.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:25.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:25.688 -07 000000576 INF: FPGA: Recv ZSGSRD 31768
17-03-18 01:05:25.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:25.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:25.698 -07 000000629 INF: FPGA: Recv ZSGSRD 31764
17-03-18 01:05:25.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:25.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:25.708 -07 000000474 INF: FPGA: Recv ZSGSRD 31763
17-03-18 01:05:25.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:25.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:25.718 -07 000000581 INF: FPGA: Recv ZSGSRD 31764
17-03-18 01:05:25.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:25.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:25.728 -07 000000576 INF: FPGA: Recv ZSGSRD 31774
17-03-18 01:05:25.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:25.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:25.738 -07 000000592 INF: FPGA: Recv ZSGSRD 31769
17-03-18 01:05:25.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:25.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:25.748 -07 000000455 INF: FPGA: Recv ZSGSRD 31762
17-03-18 01:05:25.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:25.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:25.758 -07 000000474 INF: FPGA: Recv ZSGSRD 31770
17-03-18 01:05:25.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:25.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:25.768 -07 000000576 INF: FPGA: Recv ZSGSRD 31768
17-03-18 01:05:25.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:25.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:25.778 -07 000000576 INF: FPGA: Recv ZPIEZORD 26579
17-03-18 01:05:25.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:25.788 -07 000000610 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 48.1 V, since DAC is at 4.813 V. Piezo Error = -11.4 V.
17-03-18 01:05:25.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -144.4 um, Read 10 ADC samples: Avg = 31767 (-143.6 uncal um), Error = 0.8 uncal um, Median = 31768 (-143.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31762 (-143.6 uncal um), Max = 31774 (-143.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:05:25.788 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31767, posNoise = 7, negNoise = 5
17-03-18 01:05:25.788 -07 000000610 INF: Z Motor: After move to -0.144390, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:25.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 01:05:25.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:25.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:25.788 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:25.788 -07 000000455 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:25.788 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:25.788 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:25.788 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:25.788 -07 000000455 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:25.798 -07 000000455 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:25.798 -07 000000455 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:25.808 -07 000000455 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:05:25.808 -07 000000455 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:05:25.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:26.008 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 193
17-03-18 01:05:26.308 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 493
17-03-18 01:05:26.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 493
17-03-18 01:05:26.308 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:26.308 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-18 01:05:26.498 -07 000000576 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:26.498 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:26.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall
17-03-18 01:05:26.898 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 583 ms.
17-03-18 01:05:26.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:26.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:26.898 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-18 01:05:27.098 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:27.108 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:27.118 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=42.17]
17-03-18 01:05:27.118 -07 000000610 INF: Scanning Z-Position: -0.142388
17-03-18 01:05:27.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 31105, sync = True, waitForSettling = True)
17-03-18 01:05:27.118 -07 000000610 INF: Z Motor: Moving to -0.142390 mm, started at -0.144401 mm, distance = 2.01 um
17-03-18 01:05:27.118 -07 000000610 INF: FPGA: Xmit ZDACW 31105\n [Z Motor]
17-03-18 01:05:27.118 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:05:27.128 -07 000000610 INF: FPGA: 'ZDACW 31105' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:05:27.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:27.128 -07 000000581 INF: FPGA: Recv ZDACR 31105
17-03-18 01:05:27.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:27.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:27.228 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:05:27.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:05:27.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:27.288 -07 000000455 INF: FPGA: Recv ZSGSRD 31453
17-03-18 01:05:27.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:27.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:27.298 -07 000000576 INF: FPGA: Recv ZSGSRD 31456
17-03-18 01:05:27.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:27.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:27.308 -07 000000576 INF: FPGA: Recv ZSGSRD 31455
17-03-18 01:05:27.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:27.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:27.318 -07 000000455 INF: FPGA: Recv ZSGSRD 31453
17-03-18 01:05:27.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:27.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:27.328 -07 000000576 INF: FPGA: Recv ZSGSRD 31453
17-03-18 01:05:27.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:27.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:27.338 -07 000000576 INF: FPGA: Recv ZSGSRD 31451
17-03-18 01:05:27.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:27.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:27.348 -07 000000611 INF: FPGA: Recv ZSGSRD 31455
17-03-18 01:05:27.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:27.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:27.358 -07 000000430 INF: FPGA: Recv ZSGSRD 31454
17-03-18 01:05:27.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:27.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:27.368 -07 000000611 INF: FPGA: Recv ZSGSRD 31454
17-03-18 01:05:27.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:27.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:27.378 -07 000000611 INF: FPGA: Recv ZSGSRD 31454
17-03-18 01:05:27.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:27.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:27.388 -07 000000576 INF: FPGA: Recv ZPIEZORD 26284
17-03-18 01:05:27.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:27.398 -07 000000610 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 47.5 V, since DAC is at 4.746 V. Piezo Error = -11.3 V.
17-03-18 01:05:27.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -142.4 um, Read 10 ADC samples: Avg = 31454 (-141.6 uncal um), Error = 0.8 uncal um, Median = 31454 (-141.6 uncal um), StdDev = 1 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 31451 (-141.6 uncal um), Max = 31456 (-141.6 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:05:27.398 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31454, posNoise = 2, negNoise = 3
17-03-18 01:05:27.398 -07 000000610 INF: Z Motor: After move to -0.142390, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:27.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:05:27.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:27.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:27.398 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:27.398 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:27.398 -07 000000611 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:27.398 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:27.398 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:27.398 -07 000000611 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:27.408 -07 000000611 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:27.408 -07 000000611 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:27.418 -07 000000611 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:05:27.418 -07 000000611 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:05:27.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:27.618 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:27.918 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:27.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:27.918 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:27.918 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:05:28.108 -07 000000591 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:28.108 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:28.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall
17-03-18 01:05:28.498 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 578 ms.
17-03-18 01:05:28.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:28.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:28.508 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms.
17-03-18 01:05:28.708 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:28.718 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:28.728 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=41.90]
17-03-18 01:05:28.728 -07 000000610 INF: Scanning Z-Position: -0.140388
17-03-18 01:05:28.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 30668, sync = True, waitForSettling = True)
17-03-18 01:05:28.728 -07 000000610 INF: Z Motor: Moving to -0.140389 mm, started at -0.142391 mm, distance = 2.00 um
17-03-18 01:05:28.728 -07 000000610 INF: FPGA: Xmit ZDACW 30668\n [Z Motor]
17-03-18 01:05:28.728 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:05:28.738 -07 000000610 INF: FPGA: 'ZDACW 30668' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:05:28.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:28.738 -07 000000430 INF: FPGA: Recv ZDACR 30668
17-03-18 01:05:28.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:28.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:28.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:28.898 -07 000000576 INF: FPGA: Recv ZSGSRD 31146
17-03-18 01:05:28.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:28.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:28.908 -07 000000461 INF: FPGA: Recv ZSGSRD 31139
17-03-18 01:05:28.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:28.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:28.918 -07 000000455 INF: FPGA: Recv ZSGSRD 31141
17-03-18 01:05:28.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:28.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:28.928 -07 000000461 INF: FPGA: Recv ZSGSRD 31145
17-03-18 01:05:28.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:28.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:28.938 -07 000000455 INF: FPGA: Recv ZSGSRD 31138
17-03-18 01:05:28.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:28.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:28.948 -07 000000430 INF: FPGA: Recv ZSGSRD 31146
17-03-18 01:05:28.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:28.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:28.958 -07 000000611 INF: FPGA: Recv ZSGSRD 31145
17-03-18 01:05:28.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:28.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:28.968 -07 000000592 INF: FPGA: Recv ZSGSRD 31147
17-03-18 01:05:28.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:28.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:28.978 -07 000000576 INF: FPGA: Recv ZSGSRD 31142
17-03-18 01:05:28.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:28.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:28.988 -07 000000430 INF: FPGA: Recv ZSGSRD 31140
17-03-18 01:05:28.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:28.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:28.998 -07 000000579 INF: FPGA: Recv ZPIEZORD 26057
17-03-18 01:05:29.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:29.008 -07 000000610 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.680 V. Piezo Error = -11.1 V.
17-03-18 01:05:29.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.4 um, Read 10 ADC samples: Avg = 31143 (-139.6 uncal um), Error = 0.8 uncal um, Median = 31144 (-139.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31138 (-139.6 uncal um), Max = 31147 (-139.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:05:29.008 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31143, posNoise = 4, negNoise = 5
17-03-18 01:05:29.008 -07 000000610 INF: Z Motor: After move to -0.140389, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:29.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:05:29.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:29.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:29.008 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:29.008 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:29.008 -07 000000576 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:29.008 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:29.008 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:29.008 -07 000000576 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:29.018 -07 000000576 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:29.018 -07 000000576 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:29.028 -07 000000576 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:05:29.028 -07 000000576 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-18 01:05:29.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:29.228 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:29.528 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:29.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:29.528 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:29.528 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) start.
17-03-18 01:05:29.648 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.007176,
17-03-18 01:05:29.718 -07 000000579 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:29.718 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:29.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 689 ms overall
17-03-18 01:05:30.118 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:05:30.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:30.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:30.118 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:05:30.418 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:30.428 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:30.438 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=41.13]
17-03-18 01:05:30.438 -07 000000610 INF: Scanning Z-Position: -0.138388
17-03-18 01:05:30.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 30231, sync = True, waitForSettling = True)
17-03-18 01:05:30.438 -07 000000610 INF: Z Motor: Moving to -0.138389 mm, started at -0.140393 mm, distance = 2.00 um
17-03-18 01:05:30.438 -07 000000610 INF: FPGA: Xmit ZDACW 30231\n [Z Motor]
17-03-18 01:05:30.448 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:05:30.448 -07 000000610 INF: FPGA: 'ZDACW 30231' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:05:30.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:30.448 -07 000000592 INF: FPGA: Recv ZDACR 30231
17-03-18 01:05:30.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:30.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:30.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:30.608 -07 000000461 INF: FPGA: Recv ZSGSRD 30834
17-03-18 01:05:30.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:30.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:30.618 -07 000000461 INF: FPGA: Recv ZSGSRD 30831
17-03-18 01:05:30.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:30.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:30.628 -07 000000461 INF: FPGA: Recv ZSGSRD 30831
17-03-18 01:05:30.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:30.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:30.638 -07 000000461 INF: FPGA: Recv ZSGSRD 30830
17-03-18 01:05:30.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:30.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:30.648 -07 000000461 INF: FPGA: Recv ZSGSRD 30836
17-03-18 01:05:30.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:30.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:30.658 -07 000000461 INF: FPGA: Recv ZSGSRD 30836
17-03-18 01:05:30.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:30.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:30.668 -07 000000461 INF: FPGA: Recv ZSGSRD 30832
17-03-18 01:05:30.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:30.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:30.678 -07 000000461 INF: FPGA: Recv ZSGSRD 30831
17-03-18 01:05:30.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:30.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:30.688 -07 000000461 INF: FPGA: Recv ZSGSRD 30831
17-03-18 01:05:30.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:30.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:30.698 -07 000000461 INF: FPGA: Recv ZSGSRD 30836
17-03-18 01:05:30.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:30.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:30.708 -07 000000461 INF: FPGA: Recv ZPIEZORD 25729
17-03-18 01:05:30.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:30.718 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.613 V. Piezo Error = -11.2 V.
17-03-18 01:05:30.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30833 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30832 (-137.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30830 (-137.6 uncal um), Max = 30836 (-137.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:05:30.718 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30833, posNoise = 3, negNoise = 3
17-03-18 01:05:30.718 -07 000000610 INF: Z Motor: After move to -0.138389, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:30.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 01:05:30.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:30.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:30.718 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:30.728 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:30.728 -07 000000461 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:30.728 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:30.728 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:30.728 -07 000000461 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:30.728 -07 000000461 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:30.728 -07 000000461 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:30.738 -07 000000461 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:05:30.738 -07 000000461 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:05:30.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:30.938 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:31.238 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:31.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:31.238 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:31.248 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-18 01:05:31.428 -07 000000461 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:31.438 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:31.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 680 ms to get response, and 690 ms overall
17-03-18 01:05:31.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-18 01:05:31.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:31.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:31.828 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:05:32.038 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:32.048 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:32.058 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=40.04]
17-03-18 01:05:32.058 -07 000000610 INF: Scanning Z-Position: -0.136388
17-03-18 01:05:32.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29794, sync = True, waitForSettling = True)
17-03-18 01:05:32.058 -07 000000610 INF: Z Motor: Moving to -0.136388 mm, started at -0.138401 mm, distance = 2.01 um
17-03-18 01:05:32.058 -07 000000610 INF: FPGA: Xmit ZDACW 29794\n [Z Motor]
17-03-18 01:05:32.058 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:05:32.068 -07 000000610 INF: FPGA: 'ZDACW 29794' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:05:32.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:32.068 -07 000000461 INF: FPGA: Recv ZDACR 29794
17-03-18 01:05:32.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:32.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:32.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:32.228 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:05:32.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:05:32.228 -07 000000611 INF: FPGA: Recv ZSGSRD 30519
17-03-18 01:05:32.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:32.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:32.238 -07 000000474 INF: FPGA: Recv ZSGSRD 30521
17-03-18 01:05:32.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:32.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:32.248 -07 000000581 INF: FPGA: Recv ZSGSRD 30519
17-03-18 01:05:32.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:32.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:32.258 -07 000000474 INF: FPGA: Recv ZSGSRD 30518
17-03-18 01:05:32.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:32.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:32.268 -07 000000611 INF: FPGA: Recv ZSGSRD 30520
17-03-18 01:05:32.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:32.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:32.278 -07 000000461 INF: FPGA: Recv ZSGSRD 30523
17-03-18 01:05:32.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:32.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:32.288 -07 000000581 INF: FPGA: Recv ZSGSRD 30519
17-03-18 01:05:32.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:32.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:32.298 -07 000000462 INF: FPGA: Recv ZSGSRD 30519
17-03-18 01:05:32.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:32.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:32.308 -07 000000611 INF: FPGA: Recv ZSGSRD 30512
17-03-18 01:05:32.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:32.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:32.318 -07 000000629 INF: FPGA: Recv ZSGSRD 30521
17-03-18 01:05:32.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:32.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:32.328 -07 000000611 INF: FPGA: Recv ZPIEZORD 25483
17-03-18 01:05:32.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:32.338 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -11.0 V.
17-03-18 01:05:32.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30519 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30519 (-135.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30512 (-135.5 uncal um), Max = 30523 (-135.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:05:32.338 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30519, posNoise = 4, negNoise = 7
17-03-18 01:05:32.338 -07 000000610 INF: Z Motor: After move to -0.136388, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:32.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:05:32.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:32.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:32.338 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:32.338 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:32.338 -07 000000474 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:32.338 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:32.338 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:32.338 -07 000000474 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:32.338 -07 000000474 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:32.338 -07 000000474 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:32.358 -07 000000474 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:05:32.358 -07 000000474 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:05:32.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:32.558 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:32.858 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:32.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:32.858 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:32.858 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:05:33.048 -07 000000581 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:33.048 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:33.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall
17-03-18 01:05:33.448 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:05:33.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:33.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:33.448 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:05:33.648 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:33.658 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:33.668 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=39.50]
17-03-18 01:05:33.668 -07 000000610 INF: Scanning Z-Position: -0.134388
17-03-18 01:05:33.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29357, sync = True, waitForSettling = True)
17-03-18 01:05:33.668 -07 000000610 INF: Z Motor: Moving to -0.134388 mm, started at -0.136384 mm, distance = 2.00 um
17-03-18 01:05:33.668 -07 000000610 INF: FPGA: Xmit ZDACW 29357\n [Z Motor]
17-03-18 01:05:33.668 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:05:33.678 -07 000000610 INF: FPGA: 'ZDACW 29357' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:05:33.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:33.678 -07 000000455 INF: FPGA: Recv ZDACR 29357
17-03-18 01:05:33.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:33.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:33.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:33.838 -07 000000461 INF: FPGA: Recv ZSGSRD 30208
17-03-18 01:05:33.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:33.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:33.848 -07 000000455 INF: FPGA: Recv ZSGSRD 30210
17-03-18 01:05:33.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:33.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:33.858 -07 000000581 INF: FPGA: Recv ZSGSRD 30215
17-03-18 01:05:33.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:33.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:33.868 -07 000000629 INF: FPGA: Recv ZSGSRD 30208
17-03-18 01:05:33.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:33.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:33.878 -07 000000611 INF: FPGA: Recv ZSGSRD 30207
17-03-18 01:05:33.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:33.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:33.888 -07 000000474 INF: FPGA: Recv ZSGSRD 30207
17-03-18 01:05:33.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:33.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:33.898 -07 000000579 INF: FPGA: Recv ZSGSRD 30208
17-03-18 01:05:33.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:33.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:33.908 -07 000000461 INF: FPGA: Recv ZSGSRD 30211
17-03-18 01:05:33.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:33.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:34.718 -07 000000474 INF: FPGA: Recv ZSGSRD 30202
17-03-18 01:05:34.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 790 ms to get response, and 800 ms overall
17-03-18 01:05:34.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:34.718 -07 000000629 INF: FPGA: Recv ZSGSRD 30212
17-03-18 01:05:34.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:05:34.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:34.728 -07 000000461 INF: FPGA: Recv ZPIEZORD 25288
17-03-18 01:05:34.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:34.738 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.480 V. Piezo Error = -10.8 V.
17-03-18 01:05:34.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30209 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30208 (-133.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30202 (-133.6 uncal um), Max = 30215 (-133.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:05:34.738 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30209, posNoise = 6, negNoise = 7
17-03-18 01:05:34.738 -07 000000610 INF: Z Motor: After move to -0.134388, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:34.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 1068 ms)
17-03-18 01:05:34.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:34.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:34.738 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:34.738 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:34.738 -07 000000579 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:34.738 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:34.738 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:05:34.738 -07 000000579 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:34.748 -07 000000579 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:34.748 -07 000000579 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:34.748 -07 000000579 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:05:34.748 -07 000000579 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-18 01:05:34.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:34.948 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:35.028 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.000345,
17-03-18 01:05:35.248 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:35.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:35.248 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:35.258 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) start.
17-03-18 01:05:35.448 -07 000000455 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:35.448 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:35.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 681 ms to get response, and 689 ms overall
17-03-18 01:05:35.838 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1441297568, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:05:35.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:35.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:35.848 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:05:36.148 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:36.158 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:36.168 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=39.06]
17-03-18 01:05:36.168 -07 000000610 INF: Scanning Z-Position: -0.132388
17-03-18 01:05:36.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28920, sync = True, waitForSettling = True)
17-03-18 01:05:36.168 -07 000000610 INF: Z Motor: Moving to -0.132387 mm, started at -0.134392 mm, distance = 2.01 um
17-03-18 01:05:36.168 -07 000000610 INF: FPGA: Xmit ZDACW 28920\n [Z Motor]
17-03-18 01:05:36.178 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:05:36.178 -07 000000610 INF: FPGA: 'ZDACW 28920' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:05:36.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:36.178 -07 000000462 INF: FPGA: Recv ZDACR 28920
17-03-18 01:05:36.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:05:36.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:36.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:36.338 -07 000000461 INF: FPGA: Recv ZSGSRD 29894
17-03-18 01:05:36.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:36.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:36.348 -07 000000576 INF: FPGA: Recv ZSGSRD 29900
17-03-18 01:05:36.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:36.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:36.358 -07 000000455 INF: FPGA: Recv ZSGSRD 29897
17-03-18 01:05:36.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:36.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:36.368 -07 000000462 INF: FPGA: Recv ZSGSRD 29896
17-03-18 01:05:36.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:36.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:36.378 -07 000000461 INF: FPGA: Recv ZSGSRD 29901
17-03-18 01:05:36.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:36.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:36.388 -07 000000462 INF: FPGA: Recv ZSGSRD 29887
17-03-18 01:05:36.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:36.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:36.398 -07 000000455 INF: FPGA: Recv ZSGSRD 29900
17-03-18 01:05:36.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:36.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:36.408 -07 000000462 INF: FPGA: Recv ZSGSRD 29894
17-03-18 01:05:36.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:36.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:36.418 -07 000000455 INF: FPGA: Recv ZSGSRD 29895
17-03-18 01:05:36.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:36.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:36.428 -07 000000474 INF: FPGA: Recv ZSGSRD 29899
17-03-18 01:05:36.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:36.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:36.438 -07 000000461 INF: FPGA: Recv ZPIEZORD 24941
17-03-18 01:05:36.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:36.448 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -10.8 V.
17-03-18 01:05:36.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29896 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29896 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29887 (-131.5 uncal um), Max = 29901 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:05:36.448 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29896, posNoise = 5, negNoise = 9
17-03-18 01:05:36.448 -07 000000610 INF: Z Motor: After move to -0.132387, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:36.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 01:05:36.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:36.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:36.448 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:36.448 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:36.448 -07 000000455 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:05:36.448 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:36.458 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:36.458 -07 000000455 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:05:36.458 -07 000000455 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:36.458 -07 000000455 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:05:36.468 -07 000000455 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:05:36.468 -07 000000455 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:05:36.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:36.668 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:05:36.968 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:05:36.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:05:36.968 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:05:36.978 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-18 01:05:37.158 -07 000000474 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:05:37.158 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:37.158 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 687 ms to get response, and 689 ms overall
17-03-18 01:05:37.228 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:05:37.558 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:05:37.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:37.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:05:37.558 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-18 01:05:37.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:05:37.758 -07 000000610 INF: ComputeBrenner start
17-03-18 01:05:37.768 -07 000000610 INF: Image SNR check: start
17-03-18 01:05:37.778 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=38.34]
17-03-18 01:05:37.778 -07 000000610 INF: Through-focus: Z pos. [um] vs. Focus metric
17-03-18 01:05:37.778 -07 000000610 INF:   -212.388  2.093567
17-03-18 01:05:37.778 -07 000000610 INF:   -210.388  2.10326
17-03-18 01:05:37.778 -07 000000610 INF:   -208.388  2.097154
17-03-18 01:05:37.778 -07 000000610 INF:   -206.388  2.09348
17-03-18 01:05:37.778 -07 000000610 INF:   -204.388  2.094316
17-03-18 01:05:37.778 -07 000000610 INF:   -202.388  2.095546
17-03-18 01:05:37.778 -07 000000610 INF:   -200.388  2.096162
17-03-18 01:05:37.778 -07 000000610 INF:   -198.388  2.092197
17-03-18 01:05:37.778 -07 000000610 INF:   -196.388  2.093247
17-03-18 01:05:37.778 -07 000000610 INF:   -194.388  2.097437
17-03-18 01:05:37.778 -07 000000610 INF:   -192.388  2.089574
17-03-18 01:05:37.778 -07 000000610 INF:   -190.388  2.092841
17-03-18 01:05:37.778 -07 000000610 INF:   -188.388  2.095218
17-03-18 01:05:37.778 -07 000000610 INF:   -186.388  2.093996
17-03-18 01:05:37.778 -07 000000610 INF:   -184.388  2.100422
17-03-18 01:05:37.778 -07 000000610 INF:   -182.388  2.105544
17-03-18 01:05:37.778 -07 000000610 INF:   -180.388  2.1235
17-03-18 01:05:37.778 -07 000000610 INF:   -178.388  2.181754
17-03-18 01:05:37.778 -07 000000610 INF:   -176.388  2.374221
17-03-18 01:05:37.778 -07 000000610 INF:   -174.388  3.857612
17-03-18 01:05:37.778 -07 000000610 INF:   -172.388  12.19693
17-03-18 01:05:37.778 -07 000000610 INF:   -170.388  4.242905
17-03-18 01:05:37.778 -07 000000610 INF:   -168.388  2.287555
17-03-18 01:05:37.778 -07 000000610 INF:   -166.388  2.120023
17-03-18 01:05:37.778 -07 000000610 INF:   -164.388  2.092986
17-03-18 01:05:37.778 -07 000000610 INF:   -162.388  2.095487
17-03-18 01:05:37.778 -07 000000610 INF:   -160.388  2.083722
17-03-18 01:05:37.778 -07 000000610 INF:   -158.388  2.09213
17-03-18 01:05:37.778 -07 000000610 INF:   -156.388  2.086423
17-03-18 01:05:37.778 -07 000000610 INF:   -154.388  2.090516
17-03-18 01:05:37.778 -07 000000610 INF:   -152.388  2.088118
17-03-18 01:05:37.778 -07 000000610 INF:   -150.388  2.085601
17-03-18 01:05:37.778 -07 000000610 INF:   -148.388  2.091813
17-03-18 01:05:37.778 -07 000000610 INF:   -146.388  2.089693
17-03-18 01:05:37.778 -07 000000610 INF:   -144.388  2.088587
17-03-18 01:05:37.778 -07 000000610 INF:   -142.388  2.085558
17-03-18 01:05:37.778 -07 000000610 INF:   -140.388  2.086825
17-03-18 01:05:37.778 -07 000000610 INF:   -138.388  2.082122
17-03-18 01:05:37.778 -07 000000610 INF:   -136.388  2.092724
17-03-18 01:05:37.778 -07 000000610 INF:   -134.388  2.091932
17-03-18 01:05:37.778 -07 000000610 INF:   -132.388  2.090549
17-03-18 01:05:37.778 -07 000000610 INF: Best-focus Z [um]: -172.3331
17-03-18 01:05:37.778 -07 000000610 INF: =================== Cycle #83, Imaging ===================
17-03-18 01:05:37.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 59.91064453125, Z-Position -0.132381598201221. ------
17-03-18 01:05:37.778 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:05:37.778 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17833 mm
17-03-18 01:05:37.778 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:05:37.788 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:05:37.788 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:05:37.788 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:05:37.788 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:05:37.788 -07 000000430 INF: Y Motor: Moving to 59.9126 mm, started at 59.9106 mm, delta = 0.0020 mm
17-03-18 01:05:37.788 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38957, sync = True, waitForSettling = False)
17-03-18 01:05:37.788 -07 000000461 INF: Z Motor: Moving to -0.178334 mm, started at -0.132382 mm, distance = -45.95 um
17-03-18 01:05:37.798 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:05:37.798 -07 000000576 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:05:37.808 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:05:37.808 -07 000000430 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:05:37.808 -07 000000430 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.0000 mm (0.0 steps). UsingTableMove = False
17-03-18 01:05:37.808 -07 000000430 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:05:37.808 -07 000000461 INF: FPGA: Xmit ZDACW 38957\n [Z Motor]
17-03-18 01:05:37.808 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:05:37.818 -07 000000461 INF: FPGA: 'ZDACW 38957' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:05:37.818 -07 000000430 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:05:37.828 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:37.828 -07 000000462 INF: FPGA: Recv ZDACR 38957
17-03-18 01:05:37.838 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:05:37.838 -07 000000461 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 01:05:37.848 -07 000000576 INF: FPGA: Recv YMVTO 122701 10
17-03-18 01:05:37.848 -07 000000430 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 27 ms to get response, and 46 ms overall
17-03-18 01:05:37.848 -07 000000430 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 01:05:37.848 -07 000000430 INF: Y Motor: To move from 59.911 to 59.913 (0.002 mm) should take 3 steps, but required 10 steps (0.006 mm). Slippage = 0.004 mm (2.23%).
17-03-18 01:05:37.848 -07 000000430 INF: Y Motor: FPGA move command 'YMVTO 122701' took 46 ms, distance = 0.002 mm, average velocity = 0.043 mm/sec
17-03-18 01:05:37.988 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:05:37.988 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 01:05:40.388 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.026244,
17-03-18 01:05:40.698 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:05:40.698 -07 000000579 INF: FPGA: Recv YRDPOS 122710
17-03-18 01:05:40.708 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:40.708 -07 000000430 INF: Y Motor: Encoder = 122710 = motor step 95867.2 = 59.9170 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:05:40.718 -07 000000430 INF: Y Motor: After move to 59.912609, error = 0.004383, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:05:40.718 -07 000000430 INF: Y Motor: Position error after settling = 9 encoder counts (0.004 mm), Delta during settling = 9 counts (0.004 mm)
17-03-18 01:05:40.718 -07 000000430 INF: Y Motor: Moved to 59.9170 after 2933 ms
17-03-18 01:05:40.728 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178334 mm (DAC = 38957)
17-03-18 01:05:40.728 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:40.728 -07 000000629 INF: FPGA: Recv ZSGSRD 37056
17-03-18 01:05:40.738 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:05:40.738 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:40.738 -07 000000430 INF: FPGA: Recv ZSGSRD 37051
17-03-18 01:05:40.748 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:40.748 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:40.748 -07 000000430 INF: FPGA: Recv ZSGSRD 37051
17-03-18 01:05:40.758 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:40.758 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:40.758 -07 000000611 INF: FPGA: Recv ZSGSRD 37053
17-03-18 01:05:40.768 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:40.768 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:40.768 -07 000000611 INF: FPGA: Recv ZSGSRD 37052
17-03-18 01:05:40.778 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:40.778 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:40.778 -07 000000611 INF: FPGA: Recv ZSGSRD 37046
17-03-18 01:05:40.788 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:40.788 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:40.788 -07 000000611 INF: FPGA: Recv ZSGSRD 37044
17-03-18 01:05:40.798 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:40.798 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:40.798 -07 000000611 INF: FPGA: Recv ZSGSRD 37057
17-03-18 01:05:40.808 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:40.808 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:40.808 -07 000000592 INF: FPGA: Recv ZSGSRD 37053
17-03-18 01:05:40.818 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:40.818 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:40.818 -07 000000430 INF: FPGA: Recv ZSGSRD 37054
17-03-18 01:05:40.828 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:40.828 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:40.828 -07 000000430 INF: FPGA: Recv ZPIEZORD 32920
17-03-18 01:05:40.838 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:40.838 -07 000000455 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.944 V. Piezo Error = -9.1 V.
17-03-18 01:05:40.838 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37052 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37052 (-177.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37044 (-177.4 uncal um), Max = 37057 (-177.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:05:40.838 -07 000000455 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37052, posNoise = 5, negNoise = 8
17-03-18 01:05:40.838 -07 000000455 INF: Z Motor: After move to -0.178334, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:40.838 -07 000000455 INF: Z Motor: Settle wait time = 2935 ms, measure time = 110 ms (allowed 150 ms), total time = 3045 ms
17-03-18 01:05:40.838 -07 000000455 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:05:40.878 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3091 ms
17-03-18 01:05:40.878 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:05:40.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:40.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:40.878 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:40.878 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:40.878 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:05:40.878 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:40.878 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:40.878 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:05:40.888 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:40.888 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:05:40.898 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:05:40.898 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:05:40.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:40.948 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:05:41.248 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:05:41.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:05:41.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:05:41.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 01:05:41.288 -07 000000611 INF: FPGA: Recv @CAMSNAP 382
17-03-18 01:05:41.288 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:41.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 387 ms overall
17-03-18 01:05:41.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:05:41.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:41.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:05:41.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:05:41.388 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:05:41.388 -07 000000576 INF: Image SNR check: start
17-03-18 01:05:41.388 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:05:41.398 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:05:41.398 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:05:41.398 -07 000000576 INF: Image SNR check: pass  [peak (Max-Min)=178.12]
17-03-18 01:05:41.398 -07 000000576 INF: Autofocus start
17-03-18 01:05:41.398 -07 000000576 INF: MeasureProfile start
17-03-18 01:05:41.418 -07 000000576 INF: MeasureProfile done
17-03-18 01:05:41.418 -07 000000576 INF: X=-96  Z correction [um]=-0.5732754
17-03-18 01:05:41.418 -07 000000576 INF: Autofocus finished
17-03-18 01:05:41.598 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:05:41.598 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:05:41.598 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9169921875, Z-position -0.178353260287662. ----------
17-03-18 01:05:41.598 -07 000000610 INF: Cycle	83	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:05:41.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37344, sync = True, waitForSettling = True)
17-03-18 01:05:41.608 -07 000000610 INF: Z Motor: Moving to -0.170950 mm, started at -0.178353 mm, distance = 7.40 um
17-03-18 01:05:41.608 -07 000000610 INF: FPGA: Xmit ZDACW 37344\n [Z Motor]
17-03-18 01:05:41.608 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:05:41.618 -07 000000610 INF: FPGA: 'ZDACW 37344' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:41.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:41.618 -07 000000430 INF: FPGA: Recv ZDACR 37344
17-03-18 01:05:41.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:41.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:41.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:41.778 -07 000000611 INF: FPGA: Recv ZSGSRD 35907
17-03-18 01:05:41.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:41.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:41.788 -07 000000592 INF: FPGA: Recv ZSGSRD 35901
17-03-18 01:05:41.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:41.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:41.798 -07 000000455 INF: FPGA: Recv ZSGSRD 35905
17-03-18 01:05:41.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:41.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:41.808 -07 000000430 INF: FPGA: Recv ZSGSRD 35900
17-03-18 01:05:41.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:41.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:41.818 -07 000000430 INF: FPGA: Recv ZSGSRD 35906
17-03-18 01:05:41.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:41.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:41.828 -07 000000430 INF: FPGA: Recv ZSGSRD 35903
17-03-18 01:05:41.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:41.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:41.838 -07 000000592 INF: FPGA: Recv ZSGSRD 35901
17-03-18 01:05:41.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:41.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:41.848 -07 000000455 INF: FPGA: Recv ZSGSRD 35903
17-03-18 01:05:41.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:41.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:41.858 -07 000000430 INF: FPGA: Recv ZSGSRD 35896
17-03-18 01:05:41.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:41.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:41.868 -07 000000455 INF: FPGA: Recv ZSGSRD 35904
17-03-18 01:05:41.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:41.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:41.878 -07 000000455 INF: FPGA: Recv ZPIEZORD 31388
17-03-18 01:05:41.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:41.888 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.698 V. Piezo Error = -9.9 V.
17-03-18 01:05:41.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35903 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35903 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35896 (-170.0 uncal um), Max = 35907 (-170.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:05:41.888 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35903, posNoise = 4, negNoise = 7
17-03-18 01:05:41.888 -07 000000610 INF: Z Motor: After move to -0.170950, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:41.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:05:41.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:41.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:41.888 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:41.888 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:41.888 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:05:41.888 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:41.888 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:41.888 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:05:41.888 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:05:41.888 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:05:41.888 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:05:41.888 -07 000000592 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:05:41.898 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:05:41.898 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:05:41.908 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 01:05:41.908 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 01:05:41.918 -07 000000592 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 01:05:41.918 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:05:41.918 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:05:41.918 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:05:41.928 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:05:41.928 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-18 01:05:41.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37521 150\n [Camera]
17-03-18 01:05:42.128 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:05:42.228 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:05:42.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:05:42.518 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:05:42.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:05:42.518 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:05:42.528 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:05:42.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:05:42.528 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:05:42.638 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:05:42.638 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:05:42.638 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:05:42.638 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1441297568, 0x0, 418435064) start.
17-03-18 01:05:42.718 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37521 775
17-03-18 01:05:42.858 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:05:43.038 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:05:43.038 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:05:43.038 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:43.038 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1441297568, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:05:43.038 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:05:43.038 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:43.048 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:43.048 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 01:05:43.048 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:43.048 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:05:43.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:05:43.048 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-18 01:05:43.048 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:05:43.058 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:05:43.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:05:43.058 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:05:43.058 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1476719832, 0x0, 391868352) start.
17-03-18 01:05:43.058 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:05:43.058 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:05:43.058 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:05:43.238 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:05:43.248 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:05:43.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37521 150' command took 2 ms to send, 1300 ms to get response, and 1312 ms overall
17-03-18 01:05:43.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:05:43.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9169921875, Z-Position -0.170971840536779. ------
17-03-18 01:05:43.248 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17776 mm
17-03-18 01:05:43.248 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:05:43.258 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:05:43.258 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:05:43.258 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38832, sync = True, waitForSettling = False)
17-03-18 01:05:43.258 -07 000000579 INF: Z Motor: Moving to -0.177762 mm, started at -0.170972 mm, distance = -6.79 um
17-03-18 01:05:43.258 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:05:43.258 -07 000000581 INF: Y Motor: Moving to 60.7426 mm, started at 59.9170 mm, delta = 0.8256 mm
17-03-18 01:05:43.268 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:05:43.278 -07 000000579 INF: FPGA: Xmit ZDACW 38832\n [Z Motor]
17-03-18 01:05:43.278 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:05:43.288 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:05:43.288 -07 000000579 INF: FPGA: 'ZDACW 38832' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:05:43.288 -07 000000455 INF: FPGA: Recv YRDPOS 122710
17-03-18 01:05:43.298 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:05:43.298 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-18 01:05:43.298 -07 000000581 INF: Y Motor: Encoder = 122710 = motor step 95867.2 = 59.9170 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:05:43.298 -07 000000581 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:05:43.298 -07 000000581 INF: Y Motor: Moving 1321 steps0
17-03-18 01:05:43.318 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:43.318 -07 000000462 INF: FPGA: Recv ZDACR 38832
17-03-18 01:05:43.328 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:05:43.328 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 01:05:43.328 -07 000000579 INF: Z Motor: MoveAbsStepped took 67 ms (did NOT wait for settling yet))
17-03-18 01:05:43.458 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:05:43.458 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:05:43.458 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:43.458 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1476719832, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:05:43.458 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:05:43.458 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:43.458 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:43.458 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:43.458 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:05:43.468 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:05:43.498 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:05:43.498 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 01:05:43.698 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 01:05:43.698 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 01:05:43.738 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:05:43.738 -07 000000474 INF: FPGA: Recv YRDPOS 124394
17-03-18 01:05:43.748 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:05:43.748 -07 000000581 INF: Y Motor: Encoder = 124394 = motor step 97182.8 = 60.7393 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:05:43.748 -07 000000581 INF: Y Motor: Position error before settling (table move) = -7 encoder counts (-0.003 mm)
17-03-18 01:05:43.748 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.826 mm, average velocity = 2.029 mm/sec
17-03-18 01:05:44.698 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:05:44.698 -07 000000430 INF: FPGA: Recv YRDPOS 124394
17-03-18 01:05:44.708 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:44.708 -07 000000581 INF: Y Motor: Encoder = 124394 = motor step 97182.8 = 60.7393 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:05:44.708 -07 000000581 INF: Y Motor: After move to 60.742607, error = -0.003349, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:05:44.708 -07 000000581 INF: Y Motor: Position error after settling (table move) = -7 encoder counts (-0.003 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:05:44.708 -07 000000581 INF: Y Motor: Moved to 60.7393 after 1455 ms (table move)
17-03-18 01:05:44.718 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177762 mm (DAC = 38832)
17-03-18 01:05:44.718 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:44.718 -07 000000579 INF: FPGA: Recv ZSGSRD 36967
17-03-18 01:05:44.728 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:05:44.728 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:44.728 -07 000000430 INF: FPGA: Recv ZSGSRD 36961
17-03-18 01:05:44.738 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:44.738 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:44.738 -07 000000576 INF: FPGA: Recv ZSGSRD 36959
17-03-18 01:05:44.748 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:44.748 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:44.748 -07 000000592 INF: FPGA: Recv ZSGSRD 36956
17-03-18 01:05:44.758 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:44.758 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:44.758 -07 000000461 INF: FPGA: Recv ZSGSRD 36965
17-03-18 01:05:44.768 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:44.768 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:44.768 -07 000000461 INF: FPGA: Recv ZSGSRD 36967
17-03-18 01:05:44.778 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:44.778 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:44.778 -07 000000474 INF: FPGA: Recv ZSGSRD 36962
17-03-18 01:05:44.788 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:44.788 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:44.788 -07 000000576 INF: FPGA: Recv ZSGSRD 36959
17-03-18 01:05:44.798 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:44.798 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:44.798 -07 000000430 INF: FPGA: Recv ZSGSRD 36964
17-03-18 01:05:44.808 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:44.808 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:44.808 -07 000000461 INF: FPGA: Recv ZSGSRD 36964
17-03-18 01:05:44.818 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:44.818 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:44.818 -07 000000581 INF: FPGA: Recv ZPIEZORD 32804
17-03-18 01:05:44.828 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:44.828 -07 000000591 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.925 V. Piezo Error = -9.2 V.
17-03-18 01:05:44.828 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36962 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36963 (-176.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36956 (-176.8 uncal um), Max = 36967 (-176.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:05:44.828 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36962, posNoise = 5, negNoise = 6
17-03-18 01:05:44.828 -07 000000591 INF: Z Motor: After move to -0.177762, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:44.828 -07 000000591 INF: Z Motor: Settle wait time = 1459 ms, measure time = 108 ms (allowed 150 ms), total time = 1567 ms
17-03-18 01:05:44.828 -07 000000591 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:05:44.878 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 01:05:44.878 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:05:44.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:44.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:44.878 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:44.878 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:05:44.878 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:44.878 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:44.878 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:44.878 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:05:44.888 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:44.888 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:05:44.898 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:05:44.898 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:05:44.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:44.948 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:05:45.248 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:05:45.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:05:45.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:05:45.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 01:05:45.278 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:05:45.288 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:45.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 387 ms overall
17-03-18 01:05:45.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 01:05:45.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:45.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:05:45.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 01:05:45.388 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:05:45.388 -07 000000455 INF: Autofocus start
17-03-18 01:05:45.388 -07 000000455 INF: MeasureProfile start
17-03-18 01:05:45.388 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:05:45.398 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:05:45.398 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:05:45.398 -07 000000455 INF: MeasureProfile done
17-03-18 01:05:45.398 -07 000000455 INF: X=-128  Z correction [um]=-0.7427131
17-03-18 01:05:45.398 -07 000000455 INF: Autofocus finished
17-03-18 01:05:45.598 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:05:45.598 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:05:45.598 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7392578125, Z-position -0.177775081194903. ----------
17-03-18 01:05:45.598 -07 000000610 INF: Cycle	83	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:05:45.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37182, sync = True, waitForSettling = True)
17-03-18 01:05:45.608 -07 000000610 INF: Z Motor: Moving to -0.170208 mm, started at -0.177775 mm, distance = 7.57 um
17-03-18 01:05:45.608 -07 000000610 INF: FPGA: Xmit ZDACW 37182\n [Z Motor]
17-03-18 01:05:45.608 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:05:45.618 -07 000000610 INF: FPGA: 'ZDACW 37182' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:45.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:45.618 -07 000000592 INF: FPGA: Recv ZDACR 37182
17-03-18 01:05:45.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:45.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:45.748 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.030322,
17-03-18 01:05:45.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:45.778 -07 000000579 INF: FPGA: Recv ZSGSRD 35788
17-03-18 01:05:45.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:45.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:45.788 -07 000000592 INF: FPGA: Recv ZSGSRD 35785
17-03-18 01:05:45.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:45.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:45.808 -07 000000579 INF: FPGA: Recv ZSGSRD 35786
17-03-18 01:05:45.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:05:45.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:45.818 -07 000000592 INF: FPGA: Recv ZSGSRD 35786
17-03-18 01:05:45.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:45.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:45.828 -07 000000592 INF: FPGA: Recv ZSGSRD 35793
17-03-18 01:05:45.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:45.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:45.838 -07 000000592 INF: FPGA: Recv ZSGSRD 35784
17-03-18 01:05:45.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:45.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:45.848 -07 000000592 INF: FPGA: Recv ZSGSRD 35782
17-03-18 01:05:45.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:45.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:45.858 -07 000000579 INF: FPGA: Recv ZSGSRD 35785
17-03-18 01:05:45.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:45.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:45.868 -07 000000592 INF: FPGA: Recv ZSGSRD 35791
17-03-18 01:05:45.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:45.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:45.878 -07 000000592 INF: FPGA: Recv ZSGSRD 35786
17-03-18 01:05:45.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:45.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:45.888 -07 000000579 INF: FPGA: Recv ZPIEZORD 31224
17-03-18 01:05:45.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:45.898 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.674 V. Piezo Error = -10.0 V.
17-03-18 01:05:45.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35787 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35786 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35782 (-169.3 uncal um), Max = 35793 (-169.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:05:45.898 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35787, posNoise = 6, negNoise = 5
17-03-18 01:05:45.898 -07 000000610 INF: Z Motor: After move to -0.170208, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:45.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 01:05:45.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:45.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:45.898 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:45.898 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:45.898 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:05:45.898 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:45.898 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:05:45.898 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:05:45.898 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:45.898 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:05:45.898 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:05:45.898 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:05:45.908 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:05:45.908 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:05:45.908 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:05:45.908 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:05:45.918 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:05:45.918 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:05:45.918 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:05:45.918 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:05:45.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37359 150\n [Camera]
17-03-18 01:05:46.128 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:05:46.518 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:05:46.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:05:46.518 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:05:46.518 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:05:46.518 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:05:46.518 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:05:46.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:05:46.518 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:05:46.518 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:05:46.518 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 01:05:46.708 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37359 775
17-03-18 01:05:46.858 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:05:46.918 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:05:46.918 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:05:46.918 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:46.918 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:05:46.918 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:05:46.918 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:46.918 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:05:46.918 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:05:46.918 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:05:46.928 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:05:47.048 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:05:47.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:05:47.048 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:05:47.048 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:05:47.048 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:05:47.048 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:05:47.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:05:47.048 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:05:47.048 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:05:47.048 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:05:47.228 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:05:47.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:05:47.238 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:05:47.238 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:05:47.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37359 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-18 01:05:47.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:05:47.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7392578125, Z-Position -0.170226631928334. ------
17-03-18 01:05:47.248 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:05:47.248 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17702 mm
17-03-18 01:05:47.248 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:05:47.248 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:05:47.248 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:05:47.248 -07 000000430 INF: Y Motor: Moving to 61.5726 mm, started at 60.7393 mm, delta = 0.8334 mm
17-03-18 01:05:47.248 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 38669, sync = True, waitForSettling = False)
17-03-18 01:05:47.248 -07 000000611 INF: Z Motor: Moving to -0.177015 mm, started at -0.170227 mm, distance = -6.79 um
17-03-18 01:05:47.258 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:47.258 -07 000000611 INF: FPGA: Xmit ZDACW 38669\n [Z Motor]
17-03-18 01:05:47.258 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:05:47.268 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:05:47.268 -07 000000611 INF: FPGA: 'ZDACW 38669' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:05:47.268 -07 000000581 INF: FPGA: Recv YRDPOS 124395
17-03-18 01:05:47.278 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:05:47.278 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:05:47.278 -07 000000430 INF: Y Motor: Encoder = 124395 = motor step 97183.6 = 60.7397 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:05:47.278 -07 000000430 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:05:47.278 -07 000000430 INF: Y Motor: Moving 1333 steps-7
17-03-18 01:05:47.288 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:47.288 -07 000000461 INF: FPGA: Recv ZDACR 38669
17-03-18 01:05:47.298 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:05:47.298 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:05:47.298 -07 000000611 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:05:47.448 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:05:47.448 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:05:47.448 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:47.448 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:05:47.448 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:05:47.448 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:47.448 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:05:47.448 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:05:47.448 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:05:47.458 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:05:47.478 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:05:47.478 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:05:47.668 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 01:05:47.668 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:05:47.708 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:05:47.708 -07 000000462 INF: FPGA: Recv YRDPOS 126096
17-03-18 01:05:47.718 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:05:47.718 -07 000000430 INF: Y Motor: Encoder = 126096 = motor step 98512.5 = 61.5703 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:05:47.718 -07 000000430 INF: Y Motor: Position error before settling (table move) = -5 encoder counts (-0.002 mm)
17-03-18 01:05:47.718 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.833 mm, average velocity = 2.115 mm/sec
17-03-18 01:05:48.668 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:05:48.668 -07 000000462 INF: FPGA: Recv YRDPOS 126096
17-03-18 01:05:48.678 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:48.678 -07 000000430 INF: Y Motor: Encoder = 126096 = motor step 98512.5 = 61.5703 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:05:48.678 -07 000000430 INF: Y Motor: After move to 61.572609, error = -0.002296, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:05:48.678 -07 000000430 INF: Y Motor: Position error after settling (table move) = -5 encoder counts (-0.002 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:05:48.678 -07 000000430 INF: Y Motor: Moved to 61.5703 after 1433 ms (table move)
17-03-18 01:05:48.688 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177015 mm (DAC = 38669)
17-03-18 01:05:48.708 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:48.708 -07 000000611 INF: FPGA: Recv ZSGSRD 36850
17-03-18 01:05:48.718 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:05:48.718 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:48.718 -07 000000591 INF: FPGA: Recv ZSGSRD 36850
17-03-18 01:05:48.728 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:48.738 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:48.738 -07 000000581 INF: FPGA: Recv ZSGSRD 36847
17-03-18 01:05:48.748 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:05:48.748 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:48.748 -07 000000462 INF: FPGA: Recv ZSGSRD 36837
17-03-18 01:05:48.758 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:48.758 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:49.720 -07 000000462 INF: FPGA: Recv ZSGSRD 36840
17-03-18 01:05:49.720 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 952 ms to get response, and 962 ms overall
17-03-18 01:05:49.720 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:49.720 -07 000000430 INF: FPGA: Recv ZSGSRD 36846
17-03-18 01:05:49.730 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:49.730 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:49.730 -07 000000591 INF: FPGA: Recv ZSGSRD 36846
17-03-18 01:05:49.740 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:49.740 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:49.740 -07 000000462 INF: FPGA: Recv ZSGSRD 36854
17-03-18 01:05:49.750 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:49.750 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:49.750 -07 000000591 INF: FPGA: Recv ZSGSRD 36846
17-03-18 01:05:49.760 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:49.760 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:49.760 -07 000000462 INF: FPGA: Recv ZSGSRD 36848
17-03-18 01:05:49.770 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:49.770 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:49.770 -07 000000474 INF: FPGA: Recv ZPIEZORD 32684
17-03-18 01:05:49.780 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:49.780 -07 000000579 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.901 V. Piezo Error = -9.2 V.
17-03-18 01:05:49.780 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36846 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36846 (-176.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36837 (-176.1 uncal um), Max = 36854 (-176.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:05:49.780 -07 000000579 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36846, posNoise = 8, negNoise = 9
17-03-18 01:05:49.780 -07 000000579 INF: Z Motor: After move to -0.177015, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:49.780 -07 000000579 INF: Z Motor: Settle wait time = 1436 ms, measure time = 1092 ms (allowed 150 ms), total time = 2528 ms
17-03-18 01:05:49.780 -07 000000579 INF: Z Motor: Warning: Actual position measuring time = 1092 ms, longer than max expected time of 150 ms
17-03-18 01:05:49.780 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2532 ms
17-03-18 01:05:49.780 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:05:49.780 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:49.780 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:49.780 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:49.780 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:49.780 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:05:49.780 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:49.780 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:05:49.780 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:05:49.790 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:49.790 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:05:49.800 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:05:49.800 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:05:49.800 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:49.840 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:05:50.140 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:05:50.140 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:05:50.140 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:05:50.140 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1428998304, 0x0, 559484976) start.
17-03-18 01:05:50.180 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:05:50.180 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:50.180 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:05:50.270 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1428998304, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:05:50.270 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:50.270 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:05:50.270 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:05:50.380 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:05:50.380 -07 000000455 INF: Autofocus start
17-03-18 01:05:50.380 -07 000000455 INF: MeasureProfile start
17-03-18 01:05:50.380 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:05:50.390 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:05:50.390 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:05:50.390 -07 000000455 INF: MeasureProfile done
17-03-18 01:05:50.390 -07 000000455 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:05:50.390 -07 000000455 INF: Autofocus finished
17-03-18 01:05:50.590 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:05:50.590 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:05:50.590 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5703125, Z-position -0.177029872586459. ----------
17-03-18 01:05:50.590 -07 000000610 INF: Cycle	83	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:05:50.600 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37202, sync = True, waitForSettling = True)
17-03-18 01:05:50.600 -07 000000610 INF: Z Motor: Moving to -0.170300 mm, started at -0.177030 mm, distance = 6.73 um
17-03-18 01:05:50.600 -07 000000610 INF: FPGA: Xmit ZDACW 37202\n [Z Motor]
17-03-18 01:05:50.600 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:05:50.610 -07 000000610 INF: FPGA: 'ZDACW 37202' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:05:50.610 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:50.610 -07 000000430 INF: FPGA: Recv ZDACR 37202
17-03-18 01:05:50.620 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:50.620 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:50.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:50.770 -07 000000455 INF: FPGA: Recv ZSGSRD 35800
17-03-18 01:05:50.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:50.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:50.780 -07 000000579 INF: FPGA: Recv ZSGSRD 35805
17-03-18 01:05:50.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:50.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:50.790 -07 000000455 INF: FPGA: Recv ZSGSRD 35799
17-03-18 01:05:50.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:50.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:50.800 -07 000000430 INF: FPGA: Recv ZSGSRD 35796
17-03-18 01:05:50.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:50.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:50.820 -07 000000474 INF: FPGA: Recv ZSGSRD 35806
17-03-18 01:05:50.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:05:50.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:50.830 -07 000000462 INF: FPGA: Recv ZSGSRD 35795
17-03-18 01:05:50.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:50.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:50.840 -07 000000474 INF: FPGA: Recv ZSGSRD 35806
17-03-18 01:05:50.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:50.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:50.850 -07 000000462 INF: FPGA: Recv ZSGSRD 35793
17-03-18 01:05:50.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:50.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:50.860 -07 000000455 INF: FPGA: Recv ZSGSRD 35801
17-03-18 01:05:50.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:50.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:50.870 -07 000000461 INF: FPGA: Recv ZSGSRD 35805
17-03-18 01:05:50.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:50.880 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:50.880 -07 000000455 INF: FPGA: Recv ZPIEZORD 31264
17-03-18 01:05:50.890 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:50.890 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -10.0 V.
17-03-18 01:05:50.890 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35801 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35800 (-169.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35793 (-169.4 uncal um), Max = 35806 (-169.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:05:50.890 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35801, posNoise = 5, negNoise = 8
17-03-18 01:05:50.890 -07 000000610 INF: Z Motor: After move to -0.170300, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:50.890 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 01:05:50.890 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:50.890 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:50.890 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:50.890 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:50.890 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:05:50.890 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:05:50.890 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:05:50.890 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:50.890 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:05:50.890 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:05:50.890 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:05:50.890 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:05:50.900 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:05:50.900 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:05:50.900 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 01:05:50.900 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:05:50.910 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:05:50.910 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:05:50.910 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:05:50.910 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:05:50.910 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37379 150\n [Camera]
17-03-18 01:05:51.120 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 01:05:51.130 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.001704,
17-03-18 01:05:51.500 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:05:51.500 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:05:51.510 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:05:51.510 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:05:51.510 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:05:51.510 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:05:51.510 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:05:51.510 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:05:51.510 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:05:51.510 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:05:51.700 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37379 775
17-03-18 01:05:51.850 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:05:51.900 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:05:51.900 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:05:51.900 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:51.910 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:05:51.910 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:05:51.910 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:05:51.910 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:05:51.910 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:51.910 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:05:51.920 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:05:52.040 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:05:52.040 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:05:52.040 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:05:52.040 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:05:52.040 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:05:52.040 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:05:52.040 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:05:52.040 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:05:52.040 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:05:52.040 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 01:05:52.230 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:05:52.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:05:52.230 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:05:52.230 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:05:52.230 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37379 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-18 01:05:52.230 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:05:52.230 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5703125, Z-Position -0.170316570898319. ------
17-03-18 01:05:52.230 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:05:52.230 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17711 mm
17-03-18 01:05:52.230 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:05:52.240 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:05:52.240 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38690, sync = True, waitForSettling = False)
17-03-18 01:05:52.240 -07 000000591 INF: Z Motor: Moving to -0.177111 mm, started at -0.170317 mm, distance = -6.79 um
17-03-18 01:05:52.240 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:05:52.240 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:05:52.240 -07 000000591 INF: FPGA: Xmit ZDACW 38690\n [Z Motor]
17-03-18 01:05:52.240 -07 000000581 INF: Y Motor: Moving to 62.4026 mm, started at 61.5703 mm, delta = 0.8323 mm
17-03-18 01:05:52.240 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:05:52.250 -07 000000591 INF: FPGA: 'ZDACW 38690' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:52.250 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:52.250 -07 000000579 INF: FPGA: Recv ZDACR 38690
17-03-18 01:05:52.260 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:05:52.260 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:52.260 -07 000000591 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-18 01:05:52.270 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:05:52.270 -07 000000576 INF: FPGA: Recv YRDPOS 126097
17-03-18 01:05:52.280 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-18 01:05:52.280 -07 000000581 INF: Y Motor: Encoder = 126097 = motor step 98513.3 = 61.5708 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:05:52.280 -07 000000581 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:05:52.280 -07 000000581 INF: Y Motor: Moving 1331 steps-5
17-03-18 01:05:52.280 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:05:52.440 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 01:05:52.440 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:05:52.440 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:52.450 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 01:05:52.450 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:05:52.450 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:52.450 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:05:52.450 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:05:52.450 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 01:05:52.460 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:05:52.460 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:05:52.460 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 01:05:52.660 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 01:05:52.660 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-18 01:05:52.690 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:05:52.700 -07 000000579 INF: FPGA: Recv YRDPOS 127798
17-03-18 01:05:52.700 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:05:52.700 -07 000000581 INF: Y Motor: Encoder = 127798 = motor step 99842.2 = 62.4014 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:05:52.700 -07 000000581 INF: Y Motor: Position error before settling (table move) = -3 encoder counts (-0.001 mm)
17-03-18 01:05:52.700 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.832 mm, average velocity = 2.202 mm/sec
17-03-18 01:05:53.650 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:05:53.650 -07 000000455 INF: FPGA: Recv YRDPOS 127799
17-03-18 01:05:53.660 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:53.660 -07 000000581 INF: Y Motor: Encoder = 127799 = motor step 99843.0 = 62.4019 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:05:53.660 -07 000000581 INF: Y Motor: After move to 62.402607, error = -0.000751, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:05:53.660 -07 000000581 INF: Y Motor: Position error after settling (table move) = -2 encoder counts (-0.001 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:05:53.660 -07 000000581 INF: Y Motor: Moved to 62.4019 after 1423 ms (table move)
17-03-18 01:05:53.660 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177111 mm (DAC = 38690)
17-03-18 01:05:53.660 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:53.670 -07 000000474 INF: FPGA: Recv ZSGSRD 36865
17-03-18 01:05:53.670 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:05:53.670 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:53.670 -07 000000629 INF: FPGA: Recv ZSGSRD 36864
17-03-18 01:05:53.680 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:53.680 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:53.680 -07 000000629 INF: FPGA: Recv ZSGSRD 36856
17-03-18 01:05:53.690 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:53.690 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:53.690 -07 000000629 INF: FPGA: Recv ZSGSRD 36863
17-03-18 01:05:53.700 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:53.700 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:53.700 -07 000000629 INF: FPGA: Recv ZSGSRD 36860
17-03-18 01:05:53.710 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:53.710 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:53.710 -07 000000629 INF: FPGA: Recv ZSGSRD 36862
17-03-18 01:05:53.720 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:53.720 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:53.720 -07 000000629 INF: FPGA: Recv ZSGSRD 36862
17-03-18 01:05:53.730 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:53.730 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:53.730 -07 000000629 INF: FPGA: Recv ZSGSRD 36863
17-03-18 01:05:53.740 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:53.750 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:53.750 -07 000000629 INF: FPGA: Recv ZSGSRD 36861
17-03-18 01:05:53.760 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:05:53.760 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:53.760 -07 000000629 INF: FPGA: Recv ZSGSRD 36855
17-03-18 01:05:53.770 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:53.770 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:53.770 -07 000000576 INF: FPGA: Recv ZPIEZORD 32696
17-03-18 01:05:53.780 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:53.780 -07 000000611 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.904 V. Piezo Error = -9.2 V.
17-03-18 01:05:53.780 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36861 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36862 (-176.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36855 (-176.2 uncal um), Max = 36865 (-176.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:05:53.780 -07 000000611 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36861, posNoise = 4, negNoise = 6
17-03-18 01:05:53.780 -07 000000611 INF: Z Motor: After move to -0.177111, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:53.780 -07 000000611 INF: Z Motor: Settle wait time = 1426 ms, measure time = 113 ms (allowed 150 ms), total time = 1539 ms
17-03-18 01:05:53.780 -07 000000611 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-18 01:05:53.820 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-18 01:05:53.820 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:05:53.820 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:53.820 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:53.820 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:53.820 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:05:53.820 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:53.820 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:53.820 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:53.820 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:05:53.820 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:53.820 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:05:53.830 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:05:53.830 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:05:53.830 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:53.880 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:05:54.180 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:05:54.180 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:05:54.180 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:05:54.310 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:05:54.310 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:54.310 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 461 ms to get response, and 472 ms overall
17-03-18 01:05:54.310 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 01:05:54.430 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 01:05:54.430 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:54.430 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:05:54.430 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 249 ms.
17-03-18 01:05:54.510 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:05:54.510 -07 000000611 INF: Autofocus start
17-03-18 01:05:54.510 -07 000000611 INF: MeasureProfile start
17-03-18 01:05:54.520 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:05:54.520 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:05:54.520 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:05:54.520 -07 000000611 INF: MeasureProfile done
17-03-18 01:05:54.520 -07 000000611 INF: X=-64  Z correction [um]=-0.4038377
17-03-18 01:05:54.520 -07 000000611 INF: Autofocus finished
17-03-18 01:05:54.720 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:05:54.720 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:05:54.720 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.40185546875, Z-position -0.177126235768586. ----------
17-03-18 01:05:54.730 -07 000000610 INF: Cycle	83	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:05:54.730 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37114, sync = True, waitForSettling = True)
17-03-18 01:05:54.730 -07 000000610 INF: Z Motor: Moving to -0.169897 mm, started at -0.177126 mm, distance = 7.23 um
17-03-18 01:05:54.730 -07 000000610 INF: FPGA: Xmit ZDACW 37114\n [Z Motor]
17-03-18 01:05:54.730 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:05:54.740 -07 000000610 INF: FPGA: 'ZDACW 37114' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:05:54.740 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:54.740 -07 000000581 INF: FPGA: Recv ZDACR 37114
17-03-18 01:05:54.750 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:54.750 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:54.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:54.900 -07 000000591 INF: FPGA: Recv ZSGSRD 35737
17-03-18 01:05:54.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:54.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:54.910 -07 000000581 INF: FPGA: Recv ZSGSRD 35744
17-03-18 01:05:54.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:54.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:54.920 -07 000000581 INF: FPGA: Recv ZSGSRD 35736
17-03-18 01:05:54.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:54.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:54.930 -07 000000581 INF: FPGA: Recv ZSGSRD 35733
17-03-18 01:05:54.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:54.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:54.940 -07 000000581 INF: FPGA: Recv ZSGSRD 35740
17-03-18 01:05:54.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:54.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:54.950 -07 000000581 INF: FPGA: Recv ZSGSRD 35738
17-03-18 01:05:54.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:54.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:54.960 -07 000000591 INF: FPGA: Recv ZSGSRD 35736
17-03-18 01:05:54.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:54.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:54.970 -07 000000581 INF: FPGA: Recv ZSGSRD 35737
17-03-18 01:05:54.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:54.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:54.980 -07 000000591 INF: FPGA: Recv ZSGSRD 35738
17-03-18 01:05:54.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:54.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:54.990 -07 000000581 INF: FPGA: Recv ZSGSRD 35740
17-03-18 01:05:55.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:55.000 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:55.000 -07 000000581 INF: FPGA: Recv ZPIEZORD 31185
17-03-18 01:05:55.010 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:55.010 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -10.0 V.
17-03-18 01:05:55.010 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35738 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35738 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35733 (-169.0 uncal um), Max = 35744 (-169.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:05:55.010 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35738, posNoise = 6, negNoise = 5
17-03-18 01:05:55.010 -07 000000610 INF: Z Motor: After move to -0.169897, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:55.010 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:05:55.010 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:55.010 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:55.010 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:55.010 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:55.010 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:05:55.010 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:55.010 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:05:55.010 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:05:55.010 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:55.010 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:05:55.010 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:05:55.010 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:05:55.020 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:05:55.020 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:05:55.020 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:05:55.020 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:05:55.030 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:05:55.030 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:05:55.030 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:05:55.030 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:05:55.030 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37291 150\n [Camera]
17-03-18 01:05:55.230 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:05:55.620 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:05:55.620 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:05:55.620 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:05:55.620 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:05:55.620 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:05:55.620 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:05:55.630 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:05:55.630 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:05:55.630 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:05:55.630 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:05:55.810 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37291 775
17-03-18 01:05:55.960 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:05:56.030 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:05:56.030 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:05:56.030 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:56.030 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:05:56.030 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:05:56.030 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:56.040 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:56.040 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 01:05:56.040 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:05:56.040 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 01:05:56.150 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:05:56.150 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:05:56.150 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:05:56.150 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:05:56.150 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:05:56.150 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:05:56.150 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:05:56.150 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:05:56.270 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:05:56.270 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:05:56.340 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:05:56.340 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:05:56.340 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37291 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-18 01:05:56.340 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:05:56.350 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.40185546875, Z-Position -0.169911845533388. ------
17-03-18 01:05:56.350 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:05:56.350 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17671 mm
17-03-18 01:05:56.350 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:05:56.350 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:05:56.350 -07 000000581 INF: Y Motor: Moving to 63.2326 mm, started at 62.4019 mm, delta = 0.8308 mm
17-03-18 01:05:56.350 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:05:56.350 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38601, sync = True, waitForSettling = False)
17-03-18 01:05:56.350 -07 000000455 INF: Z Motor: Moving to -0.176704 mm, started at -0.169912 mm, distance = -6.79 um
17-03-18 01:05:56.360 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:05:56.360 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:05:56.360 -07 000000474 INF: FPGA: Recv YRDPOS 127799
17-03-18 01:05:56.370 -07 000000455 INF: FPGA: Xmit ZDACW 38601\n [Z Motor]
17-03-18 01:05:56.370 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:05:56.370 -07 000000581 INF: Y Motor: Encoder = 127799 = motor step 99843.0 = 62.4019 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:05:56.370 -07 000000581 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:05:56.370 -07 000000581 INF: Y Motor: Moving 1329 steps-3
17-03-18 01:05:56.370 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:05:56.380 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:05:56.380 -07 000000455 INF: FPGA: 'ZDACW 38601' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:05:56.390 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:05:56.400 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:56.400 -07 000000462 INF: FPGA: Recv ZDACR 38601
17-03-18 01:05:56.410 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:05:56.410 -07 000000455 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 01:05:56.550 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:05:56.550 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:05:56.550 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:56.550 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:05:56.560 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:05:56.580 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:05:56.580 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 01:05:56.590 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.015368,
17-03-18 01:05:56.660 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:05:56.660 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:05:56.660 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:56.670 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:05:56.670 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-18 01:05:56.760 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 01:05:56.770 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 369 ms to get response, and 399 ms overall
17-03-18 01:05:56.800 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:05:56.800 -07 000000474 INF: FPGA: Recv YRDPOS 129496
17-03-18 01:05:56.810 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:05:56.810 -07 000000581 INF: Y Motor: Encoder = 129496 = motor step 101168.8 = 63.2305 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:05:56.810 -07 000000581 INF: Y Motor: Position error before settling (table move) = -4 encoder counts (-0.002 mm)
17-03-18 01:05:56.810 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.831 mm, average velocity = 2.082 mm/sec
17-03-18 01:05:57.230 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:05:57.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:05:57.760 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:05:57.760 -07 000000592 INF: FPGA: Recv YRDPOS 129496
17-03-18 01:05:57.770 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:57.770 -07 000000581 INF: Y Motor: Encoder = 129496 = motor step 101168.8 = 63.2305 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:05:57.770 -07 000000581 INF: Y Motor: After move to 63.232609, error = -0.002140, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:05:57.770 -07 000000581 INF: Y Motor: Position error after settling (table move) = -4 encoder counts (-0.002 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:05:57.770 -07 000000581 INF: Y Motor: Moved to 63.2305 after 1417 ms (table move)
17-03-18 01:05:57.770 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176704 mm (DAC = 38601)
17-03-18 01:05:57.770 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:57.770 -07 000000576 INF: FPGA: Recv ZSGSRD 36800
17-03-18 01:05:57.780 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:05:57.780 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:57.780 -07 000000592 INF: FPGA: Recv ZSGSRD 36805
17-03-18 01:05:57.790 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:57.790 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:57.790 -07 000000576 INF: FPGA: Recv ZSGSRD 36790
17-03-18 01:05:57.800 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:57.800 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:57.800 -07 000000581 INF: FPGA: Recv ZSGSRD 36790
17-03-18 01:05:57.810 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:57.810 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:57.810 -07 000000576 INF: FPGA: Recv ZSGSRD 36794
17-03-18 01:05:57.820 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:57.820 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:57.820 -07 000000461 INF: FPGA: Recv ZSGSRD 36797
17-03-18 01:05:57.830 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:57.830 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:57.830 -07 000000581 INF: FPGA: Recv ZSGSRD 36790
17-03-18 01:05:57.840 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:57.840 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:57.840 -07 000000592 INF: FPGA: Recv ZSGSRD 36796
17-03-18 01:05:57.850 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:57.850 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:57.850 -07 000000474 INF: FPGA: Recv ZSGSRD 36798
17-03-18 01:05:57.860 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:57.860 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:57.860 -07 000000591 INF: FPGA: Recv ZSGSRD 36802
17-03-18 01:05:57.870 -07 000000611 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:57.870 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:58.720 -07 000000462 INF: FPGA: Recv ZPIEZORD 32580
17-03-18 01:05:58.720 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 840 ms to get response, and 850 ms overall
17-03-18 01:05:58.720 -07 000000611 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.890 V. Piezo Error = -9.3 V.
17-03-18 01:05:58.720 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36796 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36796 (-175.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36790 (-175.8 uncal um), Max = 36805 (-175.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:05:58.720 -07 000000611 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36796, posNoise = 9, negNoise = 6
17-03-18 01:05:58.720 -07 000000611 INF: Z Motor: After move to -0.176704, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:58.720 -07 000000611 INF: Z Motor: Settle wait time = 1420 ms, measure time = 944 ms (allowed 150 ms), total time = 2364 ms
17-03-18 01:05:58.720 -07 000000611 INF: Z Motor: Warning: Actual position measuring time = 944 ms, longer than max expected time of 150 ms
17-03-18 01:05:58.720 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2368 ms
17-03-18 01:05:58.720 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:05:58.720 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:58.720 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:58.720 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:58.720 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:05:58.720 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:58.720 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:58.730 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:58.730 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:05:58.730 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:58.730 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:05:58.740 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:05:58.740 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 01:05:58.740 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:05:58.790 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:05:59.090 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:05:59.090 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:05:59.090 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:05:59.090 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 01:05:59.130 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:05:59.130 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:05:59.130 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 01:05:59.210 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 01:05:59.210 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:05:59.210 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:05:59.210 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 01:05:59.230 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:05:59.230 -07 000000462 INF: Autofocus start
17-03-18 01:05:59.230 -07 000000462 INF: MeasureProfile start
17-03-18 01:05:59.230 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:05:59.240 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:05:59.240 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:05:59.240 -07 000000462 INF: MeasureProfile done
17-03-18 01:05:59.240 -07 000000462 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:05:59.240 -07 000000462 INF: Autofocus finished
17-03-18 01:05:59.440 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:05:59.440 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 01:05:59.440 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.23046875, Z-position -0.176708661979371. ----------
17-03-18 01:05:59.450 -07 000000610 INF: Cycle	83	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:05:59.450 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37081, sync = True, waitForSettling = True)
17-03-18 01:05:59.450 -07 000000610 INF: Z Motor: Moving to -0.169746 mm, started at -0.176709 mm, distance = 6.96 um
17-03-18 01:05:59.460 -07 000000610 INF: FPGA: Xmit ZDACW 37081\n [Z Motor]
17-03-18 01:05:59.460 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:05:59.470 -07 000000610 INF: FPGA: 'ZDACW 37081' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:05:59.470 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:05:59.470 -07 000000611 INF: FPGA: Recv ZDACR 37081
17-03-18 01:05:59.480 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:59.480 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:05:59.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:59.630 -07 000000462 INF: FPGA: Recv ZSGSRD 35716
17-03-18 01:05:59.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:05:59.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:59.640 -07 000000611 INF: FPGA: Recv ZSGSRD 35718
17-03-18 01:05:59.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:59.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:59.650 -07 000000462 INF: FPGA: Recv ZSGSRD 35708
17-03-18 01:05:59.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:59.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:59.660 -07 000000462 INF: FPGA: Recv ZSGSRD 35718
17-03-18 01:05:59.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:59.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:59.670 -07 000000591 INF: FPGA: Recv ZSGSRD 35713
17-03-18 01:05:59.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:59.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:59.680 -07 000000430 INF: FPGA: Recv ZSGSRD 35716
17-03-18 01:05:59.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:59.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:59.690 -07 000000611 INF: FPGA: Recv ZSGSRD 35707
17-03-18 01:05:59.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:59.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:59.700 -07 000000581 INF: FPGA: Recv ZSGSRD 35712
17-03-18 01:05:59.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:59.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:59.710 -07 000000611 INF: FPGA: Recv ZSGSRD 35715
17-03-18 01:05:59.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:59.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:05:59.720 -07 000000629 INF: FPGA: Recv ZSGSRD 35713
17-03-18 01:05:59.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:59.730 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:05:59.730 -07 000000462 INF: FPGA: Recv ZPIEZORD 31160
17-03-18 01:05:59.740 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:05:59.740 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.658 V. Piezo Error = -10.0 V.
17-03-18 01:05:59.740 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35714 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35714 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35707 (-168.8 uncal um), Max = 35718 (-168.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:05:59.740 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35714, posNoise = 4, negNoise = 7
17-03-18 01:05:59.740 -07 000000610 INF: Z Motor: After move to -0.169746, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:05:59.740 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 01:05:59.740 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:05:59.740 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:05:59.740 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:05:59.740 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:05:59.740 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:05:59.740 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:05:59.740 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:05:59.740 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:05:59.740 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:05:59.740 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:05:59.740 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:05:59.740 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:05:59.740 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:05:59.740 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:05:59.750 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:05:59.750 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:05:59.760 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 01:05:59.760 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:05:59.760 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 01:05:59.760 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 01:05:59.770 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37258 150\n [Camera]
17-03-18 01:05:59.970 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:06:00.360 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:06:00.360 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:06:00.360 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:00.360 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:06:00.360 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:06:00.360 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:00.360 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:00.360 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 01:06:00.360 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:00.360 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1082280040, 0x0, 391868352) start.
17-03-18 01:06:00.550 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37258 775
17-03-18 01:06:00.700 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:06:00.760 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1082280040, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:06:00.760 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:06:00.760 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:00.760 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:06:00.760 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:06:00.760 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:00.760 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:00.760 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:06:00.760 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:00.770 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:06:00.890 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:06:00.890 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:06:00.890 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:00.890 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:00.890 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 01:06:00.890 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:06:00.890 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:06:00.890 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:00.890 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:00.890 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:06:01.080 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:06:01.080 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:06:01.080 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37258 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:06:01.080 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:06:01.080 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.23046875, Z-Position -0.169757664441986. ------
17-03-18 01:06:01.080 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:01.090 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17656 mm
17-03-18 01:06:01.090 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:06:01.090 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:06:01.090 -07 000000430 INF: Y Motor: Moving to 64.0626 mm, started at 63.2305 mm, delta = 0.8321 mm
17-03-18 01:06:01.090 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38569, sync = True, waitForSettling = False)
17-03-18 01:06:01.090 -07 000000591 INF: Z Motor: Moving to -0.176558 mm, started at -0.169758 mm, distance = -6.80 um
17-03-18 01:06:01.090 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:01.100 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:01.100 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:01.100 -07 000000455 INF: FPGA: Recv YRDPOS 129497
17-03-18 01:06:01.110 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:06:01.110 -07 000000591 INF: FPGA: Xmit ZDACW 38569\n [Z Motor]
17-03-18 01:06:01.110 -07 000000430 INF: Y Motor: Encoder = 129497 = motor step 101169.5 = 63.2310 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:01.110 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:06:01.110 -07 000000430 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:06:01.110 -07 000000430 INF: Y Motor: Moving 1331 steps-4
17-03-18 01:06:01.120 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:06:01.120 -07 000000591 INF: FPGA: 'ZDACW 38569' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:06:01.130 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:06:01.140 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:01.140 -07 000000592 INF: FPGA: Recv ZDACR 38569
17-03-18 01:06:01.150 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:06:01.150 -07 000000591 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 01:06:01.290 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:06:01.290 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:06:01.290 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:01.290 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:06:01.290 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:06:01.290 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:01.300 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:01.300 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:06:01.300 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:01.300 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:06:01.320 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:06:01.320 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:06:01.500 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:06:01.500 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 01:06:01.540 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:01.540 -07 000000579 INF: FPGA: Recv YRDPOS 131201
17-03-18 01:06:01.550 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:01.550 -07 000000430 INF: Y Motor: Encoder = 131201 = motor step 102500.8 = 64.0630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:01.550 -07 000000430 INF: Y Motor: Position error before settling (table move) = 1 encoder counts (0.000 mm)
17-03-18 01:06:01.550 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.832 mm, average velocity = 2.117 mm/sec
17-03-18 01:06:01.950 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.009895,
17-03-18 01:06:02.230 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:06:02.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:06:02.500 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:02.500 -07 000000455 INF: FPGA: Recv YRDPOS 131201
17-03-18 01:06:02.510 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:02.510 -07 000000430 INF: Y Motor: Encoder = 131201 = motor step 102500.8 = 64.0630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:02.510 -07 000000430 INF: Y Motor: After move to 64.062607, error = 0.000381, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:06:02.510 -07 000000430 INF: Y Motor: Position error after settling (table move) = 1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:06:02.510 -07 000000430 INF: Y Motor: Moved to 64.0630 after 1419 ms (table move)
17-03-18 01:06:02.510 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176558 mm (DAC = 38569)
17-03-18 01:06:02.510 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:02.520 -07 000000430 INF: FPGA: Recv ZSGSRD 36774
17-03-18 01:06:02.520 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 01:06:02.520 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:02.520 -07 000000461 INF: FPGA: Recv ZSGSRD 36771
17-03-18 01:06:02.530 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:02.530 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:02.530 -07 000000592 INF: FPGA: Recv ZSGSRD 36768
17-03-18 01:06:02.540 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:02.540 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:02.540 -07 000000462 INF: FPGA: Recv ZSGSRD 36772
17-03-18 01:06:02.550 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:02.550 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:02.550 -07 000000591 INF: FPGA: Recv ZSGSRD 36777
17-03-18 01:06:02.560 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:02.560 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:02.560 -07 000000591 INF: FPGA: Recv ZSGSRD 36772
17-03-18 01:06:02.570 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:02.570 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:02.570 -07 000000591 INF: FPGA: Recv ZSGSRD 36779
17-03-18 01:06:02.580 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:02.580 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:02.580 -07 000000579 INF: FPGA: Recv ZSGSRD 36770
17-03-18 01:06:02.590 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:02.590 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:02.590 -07 000000579 INF: FPGA: Recv ZSGSRD 36769
17-03-18 01:06:02.600 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:02.600 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:02.600 -07 000000579 INF: FPGA: Recv ZSGSRD 36769
17-03-18 01:06:02.610 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:02.610 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:02.610 -07 000000579 INF: FPGA: Recv ZPIEZORD 32569
17-03-18 01:06:02.620 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:02.620 -07 000000629 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.885 V. Piezo Error = -9.3 V.
17-03-18 01:06:02.620 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36772 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36772 (-175.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36768 (-175.6 uncal um), Max = 36779 (-175.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:06:02.620 -07 000000629 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36772, posNoise = 7, negNoise = 4
17-03-18 01:06:02.620 -07 000000629 INF: Z Motor: After move to -0.176558, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:02.620 -07 000000629 INF: Z Motor: Settle wait time = 1422 ms, measure time = 105 ms (allowed 150 ms), total time = 1527 ms
17-03-18 01:06:02.620 -07 000000629 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 01:06:02.670 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-18 01:06:02.670 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:06:02.670 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:02.670 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:02.680 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:02.680 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:02.680 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:06:02.680 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:02.680 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:06:02.680 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:06:02.690 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:06:02.690 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:06:02.690 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:06:02.690 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:06:02.700 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:06:02.740 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:06:03.040 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:06:03.040 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:06:03.040 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:06:03.040 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1134577368, 0x0, 559484976) start.
17-03-18 01:06:03.080 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:06:03.080 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:06:03.080 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 01:06:03.170 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1134577368, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:06:03.170 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:03.170 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:06:03.170 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:06:03.280 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:03.280 -07 000000581 INF: Autofocus start
17-03-18 01:06:03.280 -07 000000581 INF: MeasureProfile start
17-03-18 01:06:03.280 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:03.290 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:06:03.290 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:06:03.290 -07 000000581 INF: MeasureProfile done
17-03-18 01:06:03.290 -07 000000581 INF: X=-64  Z correction [um]=-0.4038377
17-03-18 01:06:03.290 -07 000000581 INF: Autofocus finished
17-03-18 01:06:03.490 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:06:03.490 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 01:06:03.500 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.06298828125, Z-position -0.176554480887969. ----------
17-03-18 01:06:03.500 -07 000000610 INF: Cycle	83	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:06:03.500 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36993, sync = True, waitForSettling = True)
17-03-18 01:06:03.500 -07 000000610 INF: Z Motor: Moving to -0.169343 mm, started at -0.176554 mm, distance = 7.21 um
17-03-18 01:06:03.500 -07 000000610 INF: FPGA: Xmit ZDACW 36993\n [Z Motor]
17-03-18 01:06:03.500 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:06:03.510 -07 000000610 INF: FPGA: 'ZDACW 36993' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:06:03.510 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:03.510 -07 000000581 INF: FPGA: Recv ZDACR 36993
17-03-18 01:06:03.520 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:03.520 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:06:03.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:03.670 -07 000000591 INF: FPGA: Recv ZSGSRD 35650
17-03-18 01:06:03.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:03.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:03.680 -07 000000455 INF: FPGA: Recv ZSGSRD 35659
17-03-18 01:06:03.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:03.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:03.690 -07 000000461 INF: FPGA: Recv ZSGSRD 35651
17-03-18 01:06:03.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:03.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:03.700 -07 000000581 INF: FPGA: Recv ZSGSRD 35653
17-03-18 01:06:03.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:03.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:03.710 -07 000000591 INF: FPGA: Recv ZSGSRD 35644
17-03-18 01:06:03.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:03.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:03.720 -07 000000576 INF: FPGA: Recv ZSGSRD 35657
17-03-18 01:06:03.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:03.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:03.730 -07 000000430 INF: FPGA: Recv ZSGSRD 35651
17-03-18 01:06:03.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:03.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:03.740 -07 000000591 INF: FPGA: Recv ZSGSRD 35645
17-03-18 01:06:03.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:03.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:03.750 -07 000000430 INF: FPGA: Recv ZSGSRD 35651
17-03-18 01:06:03.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:03.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:03.760 -07 000000576 INF: FPGA: Recv ZSGSRD 35649
17-03-18 01:06:03.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:03.770 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:03.770 -07 000000591 INF: FPGA: Recv ZPIEZORD 31119
17-03-18 01:06:03.780 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:03.780 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.645 V. Piezo Error = -10.0 V.
17-03-18 01:06:03.780 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35651 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35651 (-168.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35644 (-168.4 uncal um), Max = 35659 (-168.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:06:03.780 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35651, posNoise = 8, negNoise = 7
17-03-18 01:06:03.780 -07 000000610 INF: Z Motor: After move to -0.169343, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:03.780 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:06:03.780 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:03.780 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:03.780 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:03.780 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:06:03.780 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:03.780 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:03.780 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:06:03.780 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:06:03.780 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:06:03.780 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:06:03.780 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:06:03.780 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:06:03.790 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:06:03.790 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:06:03.790 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:06:03.790 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:06:03.800 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:06:03.800 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:06:03.800 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:06:03.800 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:06:03.800 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37170 150\n [Camera]
17-03-18 01:06:04.000 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:06:04.390 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:06:04.390 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:06:04.400 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:04.400 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:04.400 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:06:04.400 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:06:04.400 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:06:04.400 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:04.400 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:04.400 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:06:04.590 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37170 775
17-03-18 01:06:04.740 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:06:04.780 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:06:04.780 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:06:04.780 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:04.780 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:06:04.790 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:06:04.790 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:06:04.790 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:06:04.790 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:04.790 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:04.790 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:06:04.920 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:06:04.920 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:06:04.930 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:04.930 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:04.930 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:06:04.930 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:06:04.930 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:06:04.930 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:04.930 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:04.930 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 01:06:05.120 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 01:06:05.120 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:06:05.120 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37170 150' command took 2 ms to send, 1304 ms to get response, and 1316 ms overall
17-03-18 01:06:05.120 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:06:05.120 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.06298828125, Z-Position -0.169352939077055. ------
17-03-18 01:06:05.120 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:05.120 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17615 mm
17-03-18 01:06:05.120 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:06:05.130 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:05.130 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-18 01:06:05.130 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:06:05.130 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 38480, sync = True, waitForSettling = False)
17-03-18 01:06:05.130 -07 000000611 INF: Z Motor: Moving to -0.176150 mm, started at -0.169353 mm, distance = -6.80 um
17-03-18 01:06:05.130 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:06:05.130 -07 000000462 INF: Y Motor: Moving to 64.8926 mm, started at 64.0630 mm, delta = 0.8296 mm
17-03-18 01:06:05.140 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:05.140 -07 000000591 INF: FPGA: Recv YRDPOS 131202
17-03-18 01:06:05.150 -07 000000611 INF: FPGA: Xmit ZDACW 38480\n [Z Motor]
17-03-18 01:06:05.150 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:06:05.150 -07 000000462 INF: Y Motor: Encoder = 131202 = motor step 102501.6 = 64.0635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:05.150 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:06:05.150 -07 000000462 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:06:05.150 -07 000000462 INF: Y Motor: Moving 1327 steps1
17-03-18 01:06:05.160 -07 000000611 INF: FPGA: 'ZDACW 38480' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:06:05.160 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:06:05.170 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:05.170 -07 000000455 INF: FPGA: Recv ZDACR 38480
17-03-18 01:06:05.180 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:06:05.180 -07 000000611 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 01:06:05.330 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 01:06:05.330 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:06:05.330 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:05.330 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:06:05.330 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:06:05.330 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:05.330 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:06:05.330 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-18 01:06:05.340 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:05.340 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:06:05.340 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:06:05.340 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:06:05.530 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 01:06:05.530 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 01:06:05.570 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:05.570 -07 000000461 INF: FPGA: Recv YRDPOS 132885
17-03-18 01:06:05.580 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:05.580 -07 000000462 INF: Y Motor: Encoder = 132885 = motor step 103816.4 = 64.8853 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:05.580 -07 000000462 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:06:05.580 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.830 mm, average velocity = 2.160 mm/sec
17-03-18 01:06:06.530 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:06.530 -07 000000629 INF: FPGA: Recv YRDPOS 132885
17-03-18 01:06:06.540 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:06.540 -07 000000462 INF: Y Motor: Encoder = 132885 = motor step 103816.4 = 64.8853 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:06.560 -07 000000462 INF: Y Motor: After move to 64.892609, error = -0.007355, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:06:06.560 -07 000000462 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:06:06.560 -07 000000462 INF: Y Motor: Moved to 64.8853 after 1429 ms (table move)
17-03-18 01:06:06.560 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176150 mm (DAC = 38480)
17-03-18 01:06:06.560 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:06.570 -07 000000455 INF: FPGA: Recv ZSGSRD 36719
17-03-18 01:06:06.580 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:06.580 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:06.580 -07 000000629 INF: FPGA: Recv ZSGSRD 36712
17-03-18 01:06:06.590 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:06.590 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:06.590 -07 000000474 INF: FPGA: Recv ZSGSRD 36708
17-03-18 01:06:06.600 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:06.600 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:06.600 -07 000000629 INF: FPGA: Recv ZSGSRD 36712
17-03-18 01:06:06.610 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:06.610 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:06.610 -07 000000576 INF: FPGA: Recv ZSGSRD 36703
17-03-18 01:06:06.620 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:06.620 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:06.620 -07 000000455 INF: FPGA: Recv ZSGSRD 36712
17-03-18 01:06:06.630 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:06.630 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:06.630 -07 000000576 INF: FPGA: Recv ZSGSRD 36712
17-03-18 01:06:06.640 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:06.640 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:06.640 -07 000000629 INF: FPGA: Recv ZSGSRD 36710
17-03-18 01:06:06.650 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:06.650 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:06.650 -07 000000629 INF: FPGA: Recv ZSGSRD 36716
17-03-18 01:06:06.660 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:06.660 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:06.660 -07 000000455 INF: FPGA: Recv ZSGSRD 36709
17-03-18 01:06:06.670 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:06.670 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:06.670 -07 000000462 INF: FPGA: Recv ZPIEZORD 32495
17-03-18 01:06:06.680 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:06.680 -07 000000592 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.872 V. Piezo Error = -9.3 V.
17-03-18 01:06:06.680 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36711 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36712 (-175.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36703 (-175.2 uncal um), Max = 36719 (-175.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:06:06.680 -07 000000592 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36711, posNoise = 8, negNoise = 8
17-03-18 01:06:06.680 -07 000000592 INF: Z Motor: After move to -0.176150, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:06.680 -07 000000592 INF: Z Motor: Settle wait time = 1433 ms, measure time = 112 ms (allowed 150 ms), total time = 1545 ms
17-03-18 01:06:06.680 -07 000000592 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 01:06:06.720 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-18 01:06:06.720 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:06:06.720 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:06.720 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:06.720 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:06.720 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:06.720 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:06:06.720 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:06.720 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:06.720 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:06:06.730 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:06:06.730 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:06:06.740 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:06:06.740 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:06:06.740 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:06:06.790 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:06:07.090 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:06:07.090 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:06:07.090 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:06:07.090 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 01:06:07.130 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:06:07.130 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 01:06:07.130 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 01:06:07.210 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 01:06:07.210 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:07.210 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:06:07.210 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 01:06:07.230 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:06:07.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:06:07.230 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:07.230 -07 000000592 INF: Autofocus start
17-03-18 01:06:07.230 -07 000000592 INF: MeasureProfile start
17-03-18 01:06:07.230 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:07.240 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:06:07.240 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:06:07.240 -07 000000592 INF: MeasureProfile done
17-03-18 01:06:07.240 -07 000000592 INF: X=-32  Z correction [um]=-0.2344
17-03-18 01:06:07.240 -07 000000592 INF: Autofocus finished
17-03-18 01:06:07.310 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.997626,
17-03-18 01:06:07.440 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:06:07.440 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:06:07.440 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.88525390625, Z-position -0.176162603947321. ----------
17-03-18 01:06:07.440 -07 000000610 INF: Cycle	83	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:06:07.450 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36942, sync = True, waitForSettling = True)
17-03-18 01:06:07.450 -07 000000610 INF: Z Motor: Moving to -0.169110 mm, started at -0.176163 mm, distance = 7.05 um
17-03-18 01:06:07.450 -07 000000610 INF: FPGA: Xmit ZDACW 36942\n [Z Motor]
17-03-18 01:06:07.450 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:06:07.460 -07 000000610 INF: FPGA: 'ZDACW 36942' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:07.460 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:07.460 -07 000000591 INF: FPGA: Recv ZDACR 36942
17-03-18 01:06:07.470 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:07.470 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:06:07.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:07.620 -07 000000591 INF: FPGA: Recv ZSGSRD 35615
17-03-18 01:06:07.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:07.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:07.630 -07 000000591 INF: FPGA: Recv ZSGSRD 35611
17-03-18 01:06:07.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:07.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:07.640 -07 000000576 INF: FPGA: Recv ZSGSRD 35612
17-03-18 01:06:07.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:07.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:07.650 -07 000000591 INF: FPGA: Recv ZSGSRD 35608
17-03-18 01:06:07.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:07.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:07.660 -07 000000576 INF: FPGA: Recv ZSGSRD 35609
17-03-18 01:06:07.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:07.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:07.670 -07 000000576 INF: FPGA: Recv ZSGSRD 35616
17-03-18 01:06:07.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:07.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:07.680 -07 000000591 INF: FPGA: Recv ZSGSRD 35612
17-03-18 01:06:07.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:07.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:07.690 -07 000000591 INF: FPGA: Recv ZSGSRD 35608
17-03-18 01:06:07.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:07.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:07.700 -07 000000591 INF: FPGA: Recv ZSGSRD 35612
17-03-18 01:06:07.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:07.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:07.710 -07 000000576 INF: FPGA: Recv ZSGSRD 35614
17-03-18 01:06:07.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:07.720 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:07.720 -07 000000576 INF: FPGA: Recv ZPIEZORD 31035
17-03-18 01:06:07.730 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:07.730 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -10.1 V.
17-03-18 01:06:07.730 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35612 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35612 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35608 (-168.2 uncal um), Max = 35616 (-168.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:06:07.730 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35612, posNoise = 4, negNoise = 4
17-03-18 01:06:07.730 -07 000000610 INF: Z Motor: After move to -0.169110, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:07.730 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:06:07.730 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:07.730 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:07.730 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:07.730 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:07.730 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:06:07.730 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:07.730 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:06:07.730 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:06:07.740 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:07.740 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:06:07.740 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:06:07.740 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:06:07.740 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:06:07.740 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:06:07.740 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:06:07.740 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:06:07.750 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:06:07.750 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:06:07.750 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:06:07.750 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:06:07.750 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37118 150\n [Camera]
17-03-18 01:06:07.950 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:06:08.340 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:06:08.340 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:06:08.340 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:08.340 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:08.340 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 01:06:08.340 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:06:08.340 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:06:08.340 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:08.340 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:08.340 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:06:08.740 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:06:08.740 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:06:08.740 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:08.750 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:06:08.750 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:06:08.750 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:08.750 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:08.750 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:06:08.750 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:08.760 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:06:08.760 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37118 775
17-03-18 01:06:08.760 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:06:08.870 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:06:08.870 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:06:08.870 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:08.870 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:08.870 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 01:06:08.870 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:06:08.870 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:06:08.870 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:08.870 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:08.870 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 01:06:09.060 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:06:09.060 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:06:09.060 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37118 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-18 01:06:09.060 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:06:09.070 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.88525390625, Z-Position -0.169102394803526. ------
17-03-18 01:06:09.070 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:09.070 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17592 mm
17-03-18 01:06:09.070 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:06:09.070 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:09.070 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:06:09.070 -07 000000581 INF: Y Motor: Moving to 65.7226 mm, started at 64.8853 mm, delta = 0.8374 mm
17-03-18 01:06:09.070 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38429, sync = True, waitForSettling = False)
17-03-18 01:06:09.070 -07 000000455 INF: Z Motor: Moving to -0.175917 mm, started at -0.169102 mm, distance = -6.81 um
17-03-18 01:06:09.080 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:06:09.080 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:09.080 -07 000000591 INF: FPGA: Recv YRDPOS 132885
17-03-18 01:06:09.090 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:06:09.090 -07 000000581 INF: Y Motor: Encoder = 132885 = motor step 103816.4 = 64.8853 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:09.090 -07 000000581 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:06:09.090 -07 000000581 INF: Y Motor: Moving 1340 steps-15
17-03-18 01:06:09.090 -07 000000455 INF: FPGA: Xmit ZDACW 38429\n [Z Motor]
17-03-18 01:06:09.090 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:06:09.100 -07 000000455 INF: FPGA: 'ZDACW 38429' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:06:09.100 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:06:09.110 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:06:09.120 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:09.120 -07 000000629 INF: FPGA: Recv ZDACR 38429
17-03-18 01:06:09.130 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 01:06:09.130 -07 000000455 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 01:06:09.270 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:06:09.270 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:06:09.270 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:09.270 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:06:09.270 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:06:09.270 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:09.270 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:09.280 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:06:09.280 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:06:09.280 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:06:09.300 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:06:09.300 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:06:09.480 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:06:09.490 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 369 ms to get response, and 399 ms overall
17-03-18 01:06:09.530 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:09.530 -07 000000474 INF: FPGA: Recv YRDPOS 134595
17-03-18 01:06:09.540 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:06:09.540 -07 000000581 INF: Y Motor: Encoder = 134595 = motor step 105152.3 = 65.7202 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:09.540 -07 000000581 INF: Y Motor: Position error before settling (table move) = -5 encoder counts (-0.002 mm)
17-03-18 01:06:09.540 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.837 mm, average velocity = 2.099 mm/sec
17-03-18 01:06:10.490 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:10.490 -07 000000611 INF: FPGA: Recv YRDPOS 134596
17-03-18 01:06:10.500 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:10.500 -07 000000581 INF: Y Motor: Encoder = 134596 = motor step 105153.1 = 65.7207 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:10.500 -07 000000581 INF: Y Motor: After move to 65.722610, error = -0.001907, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:06:10.500 -07 000000581 INF: Y Motor: Position error after settling (table move) = -4 encoder counts (-0.002 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:06:10.500 -07 000000581 INF: Y Motor: Moved to 65.7207 after 1430 ms (table move)
17-03-18 01:06:10.510 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175917 mm (DAC = 38429)
17-03-18 01:06:10.510 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:10.510 -07 000000474 INF: FPGA: Recv ZSGSRD 36681
17-03-18 01:06:10.520 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:10.520 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:10.520 -07 000000576 INF: FPGA: Recv ZSGSRD 36665
17-03-18 01:06:10.530 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:10.530 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:10.530 -07 000000474 INF: FPGA: Recv ZSGSRD 36667
17-03-18 01:06:10.540 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:10.540 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:10.540 -07 000000576 INF: FPGA: Recv ZSGSRD 36679
17-03-18 01:06:10.550 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:10.550 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:10.550 -07 000000474 INF: FPGA: Recv ZSGSRD 36668
17-03-18 01:06:10.560 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:10.560 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:10.560 -07 000000474 INF: FPGA: Recv ZSGSRD 36671
17-03-18 01:06:10.570 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:10.570 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:10.570 -07 000000474 INF: FPGA: Recv ZSGSRD 36666
17-03-18 01:06:10.580 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:10.580 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:10.580 -07 000000474 INF: FPGA: Recv ZSGSRD 36670
17-03-18 01:06:10.590 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:10.590 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:10.590 -07 000000581 INF: FPGA: Recv ZSGSRD 36683
17-03-18 01:06:10.600 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:10.600 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:10.600 -07 000000581 INF: FPGA: Recv ZSGSRD 36674
17-03-18 01:06:10.610 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:10.610 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:10.610 -07 000000579 INF: FPGA: Recv ZPIEZORD 32419
17-03-18 01:06:10.620 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:10.620 -07 000000592 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.864 V. Piezo Error = -9.4 V.
17-03-18 01:06:10.620 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36672 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36670 (-175.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36665 (-175.0 uncal um), Max = 36683 (-175.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:06:10.620 -07 000000592 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36672, posNoise = 11, negNoise = 7
17-03-18 01:06:10.620 -07 000000592 INF: Z Motor: After move to -0.175917, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:10.620 -07 000000592 INF: Z Motor: Settle wait time = 1433 ms, measure time = 110 ms (allowed 150 ms), total time = 1543 ms
17-03-18 01:06:10.620 -07 000000592 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:06:10.660 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-18 01:06:10.660 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:06:10.660 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:10.660 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:10.660 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:10.660 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:10.660 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:06:10.660 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:10.670 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:10.670 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:06:10.670 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:06:10.670 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:06:10.680 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:06:10.680 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 01:06:10.680 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:06:10.730 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:06:11.020 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:06:11.030 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:06:11.030 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:06:11.030 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 01:06:11.060 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:06:11.070 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:06:11.070 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:06:11.140 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:06:11.140 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:11.140 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:06:11.140 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:06:11.170 -07 000000629 INF: Autofocus start
17-03-18 01:06:11.170 -07 000000629 INF: MeasureProfile start
17-03-18 01:06:11.170 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:11.170 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:11.180 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:06:11.180 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:06:11.180 -07 000000629 INF: MeasureProfile done
17-03-18 01:06:11.180 -07 000000629 INF: X=-32  Z correction [um]=-0.2344
17-03-18 01:06:11.180 -07 000000629 INF: Autofocus finished
17-03-18 01:06:12.220 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:06:12.220 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 1030 ms to get response, and 1040 ms overall
17-03-18 01:06:12.220 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.720703125, Z-position -0.175912059673793. ----------
17-03-18 01:06:12.220 -07 000000610 INF: Cycle	83	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:06:12.220 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36891, sync = True, waitForSettling = True)
17-03-18 01:06:12.220 -07 000000610 INF: Z Motor: Moving to -0.168876 mm, started at -0.175912 mm, distance = 7.04 um
17-03-18 01:06:12.220 -07 000000610 INF: FPGA: Xmit ZDACW 36891\n [Z Motor]
17-03-18 01:06:12.230 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:06:12.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:06:12.230 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:06:12.230 -07 000000610 INF: FPGA: 'ZDACW 36891' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 01:06:12.230 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:12.230 -07 000000474 INF: FPGA: Recv ZDACR 36891
17-03-18 01:06:12.240 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:12.240 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:06:12.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:12.390 -07 000000629 INF: FPGA: Recv ZSGSRD 35577
17-03-18 01:06:12.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:12.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:12.400 -07 000000611 INF: FPGA: Recv ZSGSRD 35580
17-03-18 01:06:12.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:12.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:12.410 -07 000000579 INF: FPGA: Recv ZSGSRD 35580
17-03-18 01:06:12.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:12.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:12.420 -07 000000581 INF: FPGA: Recv ZSGSRD 35577
17-03-18 01:06:12.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:12.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:12.430 -07 000000455 INF: FPGA: Recv ZSGSRD 35577
17-03-18 01:06:12.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:12.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:12.440 -07 000000581 INF: FPGA: Recv ZSGSRD 35581
17-03-18 01:06:12.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:12.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:12.450 -07 000000629 INF: FPGA: Recv ZSGSRD 35578
17-03-18 01:06:12.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:12.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:12.460 -07 000000579 INF: FPGA: Recv ZSGSRD 35580
17-03-18 01:06:12.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:12.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:12.470 -07 000000592 INF: FPGA: Recv ZSGSRD 35578
17-03-18 01:06:12.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:12.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:12.480 -07 000000581 INF: FPGA: Recv ZSGSRD 35579
17-03-18 01:06:12.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:12.490 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:12.490 -07 000000592 INF: FPGA: Recv ZPIEZORD 31003
17-03-18 01:06:12.500 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:12.500 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -10.1 V.
17-03-18 01:06:12.500 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35579 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35578 (-168.0 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35577 (-168.0 uncal um), Max = 35581 (-168.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:06:12.500 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35579, posNoise = 2, negNoise = 2
17-03-18 01:06:12.500 -07 000000610 INF: Z Motor: After move to -0.168876, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:12.500 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 01:06:12.500 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:12.500 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:12.500 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:12.500 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:12.500 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:06:12.500 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:12.500 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:06:12.500 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:06:12.500 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:12.500 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:06:12.500 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:06:12.500 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:06:12.500 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:06:12.500 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:06:12.510 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:06:12.510 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:06:12.520 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:06:12.520 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:06:12.520 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:06:12.520 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:06:12.530 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37067 150\n [Camera]
17-03-18 01:06:12.670 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.996267,
17-03-18 01:06:12.720 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:06:13.110 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:06:13.110 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:06:13.120 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:13.120 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:13.120 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:06:13.120 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:06:13.120 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:06:13.120 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:13.120 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:13.120 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:06:13.310 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37067 775
17-03-18 01:06:13.460 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:06:13.520 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:06:13.520 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:06:13.520 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:13.520 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:13.520 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:06:13.520 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:06:13.520 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:06:13.520 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:13.530 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:13.530 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:06:13.650 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:06:13.650 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:06:13.650 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:13.650 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:13.650 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 01:06:13.650 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:06:13.650 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:06:13.650 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:13.650 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:13.650 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 01:06:13.840 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:06:13.840 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:06:13.840 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37067 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:06:13.840 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:06:13.840 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.720703125, Z-Position -0.168890395802848. ------
17-03-18 01:06:13.840 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:13.840 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17568 mm
17-03-18 01:06:13.840 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:06:13.850 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:06:13.850 -07 000000576 INF: Y Motor: Moving to 66.5526 mm, started at 65.7207 mm, delta = 0.8319 mm
17-03-18 01:06:13.850 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:13.850 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 38378, sync = True, waitForSettling = False)
17-03-18 01:06:13.850 -07 000000437 INF: Z Motor: Moving to -0.175683 mm, started at -0.168890 mm, distance = -6.79 um
17-03-18 01:06:13.850 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:06:13.850 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:13.850 -07 000000461 INF: FPGA: Recv YRDPOS 134596
17-03-18 01:06:13.860 -07 000000437 INF: FPGA: Xmit ZDACW 38378\n [Z Motor]
17-03-18 01:06:13.860 -07 000000576 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:13.860 -07 000000576 INF: Y Motor: Encoder = 134596 = motor step 105153.1 = 65.7207 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:13.860 -07 000000576 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:06:13.860 -07 000000576 INF: Y Motor: Moving 1331 steps-5
17-03-18 01:06:13.860 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:06:13.870 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:06:13.870 -07 000000437 INF: FPGA: 'ZDACW 38378' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:06:13.880 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:06:13.890 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:13.890 -07 000000455 INF: FPGA: Recv ZDACR 38378
17-03-18 01:06:13.900 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:06:13.900 -07 000000437 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 01:06:14.050 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:06:14.050 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:06:14.050 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:14.050 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:06:14.050 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:06:14.050 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:14.050 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:06:14.050 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:14.050 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:06:14.060 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:06:14.070 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:06:14.070 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 01:06:14.250 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 01:06:14.250 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:06:14.290 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:14.290 -07 000000474 INF: FPGA: Recv YRDPOS 136285
17-03-18 01:06:14.300 -07 000000576 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:14.300 -07 000000576 INF: Y Motor: Encoder = 136285 = motor step 106472.7 = 66.5454 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:14.300 -07 000000576 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:06:14.300 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.095 mm/sec
17-03-18 01:06:15.250 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:15.250 -07 000000437 INF: FPGA: Recv YRDPOS 136285
17-03-18 01:06:15.260 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:15.260 -07 000000576 INF: Y Motor: Encoder = 136285 = motor step 106472.7 = 66.5454 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:15.280 -07 000000576 INF: Y Motor: After move to 66.552605, error = -0.007195, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:06:15.280 -07 000000576 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:06:15.280 -07 000000576 INF: Y Motor: Moved to 66.5454 after 1433 ms (table move)
17-03-18 01:06:15.280 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175683 mm (DAC = 38378)
17-03-18 01:06:15.280 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:15.290 -07 000000430 INF: FPGA: Recv ZSGSRD 36637
17-03-18 01:06:15.290 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:06:15.290 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:15.290 -07 000000430 INF: FPGA: Recv ZSGSRD 36632
17-03-18 01:06:15.300 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:15.300 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:15.300 -07 000000437 INF: FPGA: Recv ZSGSRD 36636
17-03-18 01:06:15.310 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:15.310 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:15.310 -07 000000461 INF: FPGA: Recv ZSGSRD 36637
17-03-18 01:06:15.320 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:15.320 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:15.320 -07 000000430 INF: FPGA: Recv ZSGSRD 36640
17-03-18 01:06:15.330 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:15.330 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:15.330 -07 000000611 INF: FPGA: Recv ZSGSRD 36629
17-03-18 01:06:15.340 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:15.340 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:15.340 -07 000000611 INF: FPGA: Recv ZSGSRD 36635
17-03-18 01:06:15.350 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:15.350 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:15.350 -07 000000462 INF: FPGA: Recv ZSGSRD 36635
17-03-18 01:06:15.360 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:15.360 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:15.360 -07 000000462 INF: FPGA: Recv ZSGSRD 36644
17-03-18 01:06:15.370 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:15.370 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:15.370 -07 000000461 INF: FPGA: Recv ZSGSRD 36643
17-03-18 01:06:15.380 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:15.380 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:15.380 -07 000000461 INF: FPGA: Recv ZPIEZORD 32439
17-03-18 01:06:15.390 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:15.390 -07 000000629 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -9.3 V.
17-03-18 01:06:15.390 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36637 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36636 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36629 (-174.7 uncal um), Max = 36644 (-174.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:06:15.390 -07 000000629 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36637, posNoise = 7, negNoise = 8
17-03-18 01:06:15.390 -07 000000629 INF: Z Motor: After move to -0.175683, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:15.390 -07 000000629 INF: Z Motor: Settle wait time = 1437 ms, measure time = 102 ms (allowed 150 ms), total time = 1539 ms
17-03-18 01:06:15.390 -07 000000629 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:06:15.440 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-18 01:06:15.440 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:06:15.440 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:15.440 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:15.440 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:15.440 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:15.440 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:06:15.440 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:15.450 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:15.450 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:06:15.450 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:06:15.450 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:06:15.460 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:06:15.460 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:06:15.460 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:06:15.500 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:06:15.800 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:06:15.800 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:06:15.800 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:06:15.800 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 01:06:15.840 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:06:15.840 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:06:15.840 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:06:15.920 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:06:15.920 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:15.920 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:06:15.920 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:06:15.940 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:15.940 -07 000000430 INF: Autofocus start
17-03-18 01:06:15.940 -07 000000430 INF: MeasureProfile start
17-03-18 01:06:15.950 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:15.950 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:06:15.950 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:06:15.960 -07 000000430 INF: MeasureProfile done
17-03-18 01:06:15.960 -07 000000430 INF: X=-128  Z correction [um]=-0.7427131
17-03-18 01:06:15.960 -07 000000430 INF: Autofocus finished
17-03-18 01:06:16.150 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:06:16.150 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:06:16.160 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.54541015625, Z-position -0.175687212248831. ----------
17-03-18 01:06:16.160 -07 000000610 INF: Cycle	83	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:06:16.160 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36728, sync = True, waitForSettling = True)
17-03-18 01:06:16.160 -07 000000610 INF: Z Motor: Moving to -0.168130 mm, started at -0.175687 mm, distance = 7.56 um
17-03-18 01:06:16.160 -07 000000610 INF: FPGA: Xmit ZDACW 36728\n [Z Motor]
17-03-18 01:06:16.160 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:06:16.170 -07 000000610 INF: FPGA: 'ZDACW 36728' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:06:16.170 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:16.170 -07 000000611 INF: FPGA: Recv ZDACR 36728
17-03-18 01:06:16.180 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:16.180 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:06:16.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:16.330 -07 000000579 INF: FPGA: Recv ZSGSRD 35460
17-03-18 01:06:16.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:16.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:16.340 -07 000000611 INF: FPGA: Recv ZSGSRD 35466
17-03-18 01:06:16.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:16.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:16.350 -07 000000579 INF: FPGA: Recv ZSGSRD 35463
17-03-18 01:06:16.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:16.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:16.360 -07 000000611 INF: FPGA: Recv ZSGSRD 35457
17-03-18 01:06:16.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:16.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:16.370 -07 000000592 INF: FPGA: Recv ZSGSRD 35463
17-03-18 01:06:16.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:16.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:16.380 -07 000000611 INF: FPGA: Recv ZSGSRD 35463
17-03-18 01:06:16.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:16.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:16.390 -07 000000592 INF: FPGA: Recv ZSGSRD 35465
17-03-18 01:06:16.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:16.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:16.400 -07 000000611 INF: FPGA: Recv ZSGSRD 35465
17-03-18 01:06:16.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:16.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:16.410 -07 000000592 INF: FPGA: Recv ZSGSRD 35467
17-03-18 01:06:16.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:16.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:16.420 -07 000000611 INF: FPGA: Recv ZSGSRD 35460
17-03-18 01:06:16.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:16.430 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:16.430 -07 000000579 INF: FPGA: Recv ZPIEZORD 30851
17-03-18 01:06:16.440 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:16.440 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.604 V. Piezo Error = -10.1 V.
17-03-18 01:06:16.440 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35463 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35463 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35457 (-167.2 uncal um), Max = 35467 (-167.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:06:16.440 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35463, posNoise = 4, negNoise = 6
17-03-18 01:06:16.440 -07 000000610 INF: Z Motor: After move to -0.168130, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:16.440 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:06:16.440 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:16.440 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:16.440 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:16.440 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:16.440 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:06:16.440 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:16.440 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:06:16.440 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:06:16.440 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:16.440 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:06:16.440 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:06:16.440 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:06:16.450 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:06:16.450 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:06:16.450 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:06:16.450 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:06:16.460 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 01:06:16.460 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:06:16.460 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:06:16.460 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:06:16.470 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36905 150\n [Camera]
17-03-18 01:06:16.670 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:06:17.060 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:06:17.060 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:06:17.060 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:17.060 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:17.060 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 01:06:17.060 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:06:17.060 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:06:17.060 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:17.060 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:17.060 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 01:06:17.230 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:06:17.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:06:17.250 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36905 775
17-03-18 01:06:17.400 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:06:17.440 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 01:06:17.440 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 01:06:17.440 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:17.450 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:17.450 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:06:17.450 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:06:17.450 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:17.450 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:17.450 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:06:17.450 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:06:17.590 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:06:17.590 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:06:17.590 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:17.730 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:06:17.730 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:06:17.730 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:17.730 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:17.730 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 01:06:17.740 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:17.740 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:06:17.780 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:06:17.780 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:06:17.780 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36905 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-18 01:06:17.780 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:06:17.780 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.54541015625, Z-Position -0.168145187194404. ------
17-03-18 01:06:17.780 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:17.780 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17494 mm
17-03-18 01:06:17.780 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:06:17.790 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38216, sync = True, waitForSettling = False)
17-03-18 01:06:17.790 -07 000000474 INF: Z Motor: Moving to -0.174942 mm, started at -0.168145 mm, distance = -6.80 um
17-03-18 01:06:17.790 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:17.790 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:06:17.790 -07 000000474 INF: FPGA: Xmit ZDACW 38216\n [Z Motor]
17-03-18 01:06:17.790 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:06:17.790 -07 000000579 INF: Y Motor: Moving to 67.3826 mm, started at 66.5454 mm, delta = 0.8372 mm
17-03-18 01:06:17.790 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 01:06:17.800 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:17.800 -07 000000474 INF: FPGA: 'ZDACW 38216' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:06:17.800 -07 000000611 INF: FPGA: Recv YRDPOS 136286
17-03-18 01:06:17.810 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:06:17.810 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:06:17.810 -07 000000579 INF: Y Motor: Encoder = 136286 = motor step 106473.4 = 66.5459 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:17.810 -07 000000579 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:06:17.810 -07 000000579 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:06:17.820 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:17.820 -07 000000444 INF: FPGA: Recv ZDACR 38216
17-03-18 01:06:17.830 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:06:17.830 -07 000000474 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 01:06:17.830 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:06:18.010 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:06:18.010 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 01:06:18.050 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.007176,
17-03-18 01:06:18.130 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:06:18.130 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:06:18.130 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:18.130 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:06:18.130 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:06:18.130 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:18.140 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:18.140 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:18.140 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 550 ms.
17-03-18 01:06:18.140 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:06:18.200 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 01:06:18.200 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 01:06:18.250 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:18.250 -07 000000462 INF: FPGA: Recv YRDPOS 137990
17-03-18 01:06:18.260 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:18.260 -07 000000579 INF: Y Motor: Encoder = 137990 = motor step 107804.7 = 67.3779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:18.260 -07 000000579 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-18 01:06:18.260 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.837 mm, average velocity = 2.136 mm/sec
17-03-18 01:06:19.210 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:19.210 -07 000000437 INF: FPGA: Recv YRDPOS 137990
17-03-18 01:06:19.220 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:19.220 -07 000000579 INF: Y Motor: Encoder = 137990 = motor step 107804.7 = 67.3779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:19.230 -07 000000579 INF: Y Motor: After move to 67.382607, error = -0.004677, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:06:19.230 -07 000000579 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:06:19.230 -07 000000579 INF: Y Motor: Moved to 67.3779 after 1443 ms (table move)
17-03-18 01:06:19.230 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174942 mm (DAC = 38216)
17-03-18 01:06:19.230 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:19.240 -07 000000590 INF: FPGA: Recv ZSGSRD 36524
17-03-18 01:06:19.240 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:06:19.240 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:19.240 -07 000000437 INF: FPGA: Recv ZSGSRD 36526
17-03-18 01:06:19.250 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:19.250 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:19.250 -07 000000581 INF: FPGA: Recv ZSGSRD 36523
17-03-18 01:06:19.260 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:19.260 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:19.260 -07 000000462 INF: FPGA: Recv ZSGSRD 36525
17-03-18 01:06:19.270 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:19.270 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:19.270 -07 000000437 INF: FPGA: Recv ZSGSRD 36524
17-03-18 01:06:19.280 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:19.280 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:19.280 -07 000000629 INF: FPGA: Recv ZSGSRD 36524
17-03-18 01:06:19.290 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:19.290 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:19.290 -07 000000590 INF: FPGA: Recv ZSGSRD 36518
17-03-18 01:06:19.300 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:19.300 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:19.300 -07 000000629 INF: FPGA: Recv ZSGSRD 36526
17-03-18 01:06:19.310 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:19.310 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:19.310 -07 000000444 INF: FPGA: Recv ZSGSRD 36519
17-03-18 01:06:19.320 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:19.320 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:19.320 -07 000000579 INF: FPGA: Recv ZSGSRD 36523
17-03-18 01:06:19.330 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:19.330 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:19.330 -07 000000590 INF: FPGA: Recv ZPIEZORD 32268
17-03-18 01:06:19.340 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:19.340 -07 000000461 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.831 V. Piezo Error = -9.4 V.
17-03-18 01:06:19.340 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36523 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36524 (-174.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36518 (-174.0 uncal um), Max = 36526 (-174.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:06:19.340 -07 000000461 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36523, posNoise = 3, negNoise = 5
17-03-18 01:06:19.340 -07 000000461 INF: Z Motor: After move to -0.174942, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:19.340 -07 000000461 INF: Z Motor: Settle wait time = 1448 ms, measure time = 101 ms (allowed 150 ms), total time = 1549 ms
17-03-18 01:06:19.340 -07 000000461 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:06:19.390 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 01:06:19.390 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:06:19.390 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:19.390 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:19.390 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:19.390 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:19.390 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:06:19.390 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:19.400 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:19.400 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:06:19.400 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:06:19.400 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:06:19.410 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:06:19.410 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:06:19.410 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:06:19.450 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:06:19.750 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:06:19.750 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:06:19.750 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:06:19.760 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-18 01:06:19.790 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:06:19.790 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 01:06:19.790 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:06:19.870 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:06:19.870 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:19.870 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:06:19.870 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:06:19.900 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:19.900 -07 000000461 INF: Autofocus start
17-03-18 01:06:19.900 -07 000000461 INF: MeasureProfile start
17-03-18 01:06:19.900 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:19.910 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:06:19.910 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:06:19.910 -07 000000461 INF: MeasureProfile done
17-03-18 01:06:19.910 -07 000000461 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:06:19.910 -07 000000461 INF: Autofocus finished
17-03-18 01:06:20.110 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:06:20.110 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:06:20.110 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3779296875, Z-position -0.17495485206467. ----------
17-03-18 01:06:20.110 -07 000000610 INF: Cycle	83	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:06:20.120 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36731, sync = True, waitForSettling = True)
17-03-18 01:06:20.120 -07 000000610 INF: Z Motor: Moving to -0.168144 mm, started at -0.174955 mm, distance = 6.81 um
17-03-18 01:06:20.120 -07 000000610 INF: FPGA: Xmit ZDACW 36731\n [Z Motor]
17-03-18 01:06:20.120 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:06:20.130 -07 000000610 INF: FPGA: 'ZDACW 36731' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:20.130 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:20.130 -07 000000444 INF: FPGA: Recv ZDACR 36731
17-03-18 01:06:20.140 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:20.140 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:06:20.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:20.290 -07 000000462 INF: FPGA: Recv ZSGSRD 35469
17-03-18 01:06:20.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:20.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:20.300 -07 000000461 INF: FPGA: Recv ZSGSRD 35465
17-03-18 01:06:20.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:20.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:20.310 -07 000000579 INF: FPGA: Recv ZSGSRD 35459
17-03-18 01:06:20.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:20.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:20.320 -07 000000461 INF: FPGA: Recv ZSGSRD 35466
17-03-18 01:06:20.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:20.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:20.330 -07 000000629 INF: FPGA: Recv ZSGSRD 35468
17-03-18 01:06:20.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:20.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:20.340 -07 000000444 INF: FPGA: Recv ZSGSRD 35460
17-03-18 01:06:20.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:20.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:20.350 -07 000000585 INF: FPGA: Recv ZSGSRD 35462
17-03-18 01:06:20.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:20.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:20.360 -07 000000579 INF: FPGA: Recv ZSGSRD 35466
17-03-18 01:06:20.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:20.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:20.370 -07 000000437 INF: FPGA: Recv ZSGSRD 35469
17-03-18 01:06:20.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:20.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:20.380 -07 000000444 INF: FPGA: Recv ZSGSRD 35463
17-03-18 01:06:20.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:20.390 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:20.390 -07 000000629 INF: FPGA: Recv ZPIEZORD 30833
17-03-18 01:06:20.400 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:20.400 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.605 V. Piezo Error = -10.2 V.
17-03-18 01:06:20.400 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35465 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35466 (-167.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35459 (-167.2 uncal um), Max = 35469 (-167.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:06:20.400 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35465, posNoise = 4, negNoise = 6
17-03-18 01:06:20.400 -07 000000610 INF: Z Motor: After move to -0.168144, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:20.400 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:06:20.400 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:20.400 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:20.400 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:20.400 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:20.400 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:06:20.400 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:06:20.400 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:06:20.400 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:20.400 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:06:20.400 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:06:20.400 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:20.400 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:06:20.410 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:06:20.410 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:06:20.410 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:06:20.410 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:06:20.420 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:06:20.420 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:06:20.420 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:06:20.420 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:06:20.420 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36907 150\n [Camera]
17-03-18 01:06:20.630 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 01:06:21.010 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:06:21.020 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:06:21.020 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:21.020 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:06:21.020 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:06:21.020 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:21.020 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:21.020 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-18 01:06:21.020 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:21.020 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2336209168, 0x0, 391868352) start.
17-03-18 01:06:21.210 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36907 775
17-03-18 01:06:21.360 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:06:21.420 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:06:21.420 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:06:21.420 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:21.420 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2336209168, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:06:21.420 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:06:21.420 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:21.420 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:21.420 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:21.420 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:06:21.430 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:06:21.550 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:06:21.550 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:06:21.550 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:21.660 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:06:21.660 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:06:21.660 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:21.660 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:21.660 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2331803864, 0x0, 418435064) start.
17-03-18 01:06:21.660 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:21.670 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:06:21.740 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:06:21.740 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:06:21.740 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36907 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:06:21.740 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:06:21.740 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3779296875, Z-Position -0.168158035618687. ------
17-03-18 01:06:21.740 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:21.740 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17495 mm
17-03-18 01:06:21.740 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:06:21.750 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:21.750 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:06:21.750 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38218, sync = True, waitForSettling = False)
17-03-18 01:06:21.750 -07 000000461 INF: Z Motor: Moving to -0.174951 mm, started at -0.168158 mm, distance = -6.79 um
17-03-18 01:06:21.750 -07 000000461 INF: FPGA: Xmit ZDACW 38218\n [Z Motor]
17-03-18 01:06:21.750 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:06:21.750 -07 000000592 INF: Y Motor: Moving to 68.2126 mm, started at 67.3779 mm, delta = 0.8347 mm
17-03-18 01:06:21.750 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:06:21.760 -07 000000461 INF: FPGA: 'ZDACW 38218' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:06:21.760 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:21.760 -07 000000585 INF: FPGA: Recv ZDACR 38218
17-03-18 01:06:21.770 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:21.770 -07 000000461 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-18 01:06:21.770 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:06:21.780 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:21.780 -07 000000437 INF: FPGA: Recv YRDPOS 137990
17-03-18 01:06:21.790 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-18 01:06:21.790 -07 000000592 INF: Y Motor: Encoder = 137990 = motor step 107804.7 = 67.3779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:21.790 -07 000000592 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:06:21.790 -07 000000592 INF: Y Motor: Moving 1335 steps-10
17-03-18 01:06:21.790 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:06:21.970 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:06:21.970 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 01:06:22.060 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2331803864, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:06:22.060 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:06:22.060 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:22.060 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:06:22.060 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:06:22.060 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:22.070 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:22.070 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:22.070 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 01:06:22.070 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:06:22.160 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 01:06:22.160 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 01:06:22.200 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:22.210 -07 000000590 INF: FPGA: Recv YRDPOS 139698
17-03-18 01:06:22.210 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:06:22.210 -07 000000592 INF: Y Motor: Encoder = 139698 = motor step 109139.1 = 68.2119 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:22.210 -07 000000592 INF: Y Motor: Position error before settling (table move) = -1 encoder counts (0.000 mm)
17-03-18 01:06:22.210 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.835 mm, average velocity = 2.208 mm/sec
17-03-18 01:06:22.230 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:06:22.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:06:23.160 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:23.160 -07 000000579 INF: FPGA: Recv YRDPOS 139698
17-03-18 01:06:23.170 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:23.170 -07 000000592 INF: Y Motor: Encoder = 139698 = motor step 109139.1 = 68.2119 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:23.170 -07 000000592 INF: Y Motor: After move to 68.212608, error = -0.000694, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:06:23.170 -07 000000592 INF: Y Motor: Position error after settling (table move) = -1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:06:23.170 -07 000000592 INF: Y Motor: Moved to 68.2119 after 1421 ms (table move)
17-03-18 01:06:23.170 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174951 mm (DAC = 38218)
17-03-18 01:06:23.170 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:23.180 -07 000000437 INF: FPGA: Recv ZSGSRD 36521
17-03-18 01:06:23.180 -07 000000462 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:06:23.180 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:23.180 -07 000000444 INF: FPGA: Recv ZSGSRD 36537
17-03-18 01:06:23.190 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:23.190 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:23.190 -07 000000461 INF: FPGA: Recv ZSGSRD 36521
17-03-18 01:06:23.200 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:23.200 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:23.200 -07 000000461 INF: FPGA: Recv ZSGSRD 36531
17-03-18 01:06:23.210 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:23.210 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:23.210 -07 000000461 INF: FPGA: Recv ZSGSRD 36522
17-03-18 01:06:23.220 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:23.220 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:23.220 -07 000000591 INF: FPGA: Recv ZSGSRD 36523
17-03-18 01:06:23.230 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:23.230 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:23.230 -07 000000474 INF: FPGA: Recv ZSGSRD 36516
17-03-18 01:06:23.240 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:23.240 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:23.240 -07 000000430 INF: FPGA: Recv ZSGSRD 36526
17-03-18 01:06:23.250 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:23.250 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:23.250 -07 000000591 INF: FPGA: Recv ZSGSRD 36530
17-03-18 01:06:23.260 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:23.260 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:23.260 -07 000000461 INF: FPGA: Recv ZSGSRD 36522
17-03-18 01:06:23.270 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:23.270 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:23.270 -07 000000444 INF: FPGA: Recv ZPIEZORD 32222
17-03-18 01:06:23.280 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:23.280 -07 000000462 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.832 V. Piezo Error = -9.5 V.
17-03-18 01:06:23.280 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36525 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36522 (-174.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36516 (-174.0 uncal um), Max = 36537 (-174.2 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:06:23.280 -07 000000462 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36525, posNoise = 12, negNoise = 9
17-03-18 01:06:23.280 -07 000000462 INF: Z Motor: After move to -0.174951, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:23.280 -07 000000462 INF: Z Motor: Settle wait time = 1424 ms, measure time = 105 ms (allowed 150 ms), total time = 1529 ms
17-03-18 01:06:23.280 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 01:06:23.330 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-18 01:06:23.330 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:06:23.330 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:23.330 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:23.330 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:23.330 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:23.330 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:06:23.330 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:23.330 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:23.330 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:06:23.340 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:06:23.340 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:06:23.340 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:06:23.340 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:06:23.350 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:06:23.390 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:06:23.410 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.02213,
17-03-18 01:06:23.690 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:06:23.690 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:06:23.690 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:06:23.690 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-18 01:06:23.730 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:06:23.730 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 01:06:23.730 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:06:23.810 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 01:06:23.810 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:23.810 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:06:23.810 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 01:06:23.830 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:23.830 -07 000000430 INF: Autofocus start
17-03-18 01:06:23.830 -07 000000430 INF: MeasureProfile start
17-03-18 01:06:23.840 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:23.840 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:06:23.840 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:06:23.850 -07 000000430 INF: MeasureProfile done
17-03-18 01:06:23.850 -07 000000430 INF: X=-80  Z correction [um]=-0.4885566
17-03-18 01:06:23.850 -07 000000430 INF: Autofocus finished
17-03-18 01:06:24.040 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:06:24.040 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:06:24.040 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2119140625, Z-position -0.174967700488954. ----------
17-03-18 01:06:24.040 -07 000000610 INF: Cycle	83	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:06:24.050 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36624, sync = True, waitForSettling = True)
17-03-18 01:06:24.050 -07 000000610 INF: Z Motor: Moving to -0.167654 mm, started at -0.174968 mm, distance = 7.31 um
17-03-18 01:06:24.050 -07 000000610 INF: FPGA: Xmit ZDACW 36624\n [Z Motor]
17-03-18 01:06:24.050 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 01:06:24.060 -07 000000610 INF: FPGA: 'ZDACW 36624' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:24.060 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:24.060 -07 000000585 INF: FPGA: Recv ZDACR 36624
17-03-18 01:06:24.070 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:24.070 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:06:24.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:24.220 -07 000000579 INF: FPGA: Recv ZSGSRD 35391
17-03-18 01:06:24.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:24.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:24.230 -07 000000629 INF: FPGA: Recv ZSGSRD 35384
17-03-18 01:06:24.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:24.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:24.240 -07 000000591 INF: FPGA: Recv ZSGSRD 35388
17-03-18 01:06:24.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:24.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:24.250 -07 000000462 INF: FPGA: Recv ZSGSRD 35392
17-03-18 01:06:24.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:24.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:24.260 -07 000000437 INF: FPGA: Recv ZSGSRD 35386
17-03-18 01:06:24.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:24.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:24.270 -07 000000585 INF: FPGA: Recv ZSGSRD 35387
17-03-18 01:06:24.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:24.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:24.280 -07 000000430 INF: FPGA: Recv ZSGSRD 35387
17-03-18 01:06:24.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:24.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:24.290 -07 000000437 INF: FPGA: Recv ZSGSRD 35391
17-03-18 01:06:24.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:24.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:24.300 -07 000000629 INF: FPGA: Recv ZSGSRD 35383
17-03-18 01:06:24.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:24.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:24.310 -07 000000430 INF: FPGA: Recv ZSGSRD 35384
17-03-18 01:06:24.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:24.320 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:24.320 -07 000000629 INF: FPGA: Recv ZPIEZORD 30732
17-03-18 01:06:24.330 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:24.330 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.588 V. Piezo Error = -10.2 V.
17-03-18 01:06:24.330 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35387 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35387 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35383 (-166.8 uncal um), Max = 35392 (-166.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:06:24.330 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35387, posNoise = 5, negNoise = 4
17-03-18 01:06:24.330 -07 000000610 INF: Z Motor: After move to -0.167654, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:24.330 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:06:24.330 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:24.330 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:24.330 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:24.330 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:06:24.330 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:24.330 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:06:24.330 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:06:24.330 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:24.330 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:06:24.330 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:06:24.330 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:24.330 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:06:24.340 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:06:24.340 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:06:24.340 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:06:24.340 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:06:24.350 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:06:24.350 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:06:24.350 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:06:24.350 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:06:24.350 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36801 150\n [Camera]
17-03-18 01:06:24.550 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:06:24.940 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:06:24.940 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:06:24.940 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:24.940 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:24.940 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2367226128, 0x0, 391868352) start.
17-03-18 01:06:24.940 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:06:24.940 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:06:24.940 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:24.940 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:24.940 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:06:25.130 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36801 775
17-03-18 01:06:25.280 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:06:25.330 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2367226128, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:06:25.330 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:06:25.330 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:25.330 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:25.330 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:06:25.330 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:06:25.330 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:06:25.330 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:25.340 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:25.340 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:06:25.470 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:06:25.470 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:06:25.470 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:25.470 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:06:25.470 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:06:25.470 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:25.480 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:25.480 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:06:25.480 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:25.480 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 01:06:25.660 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:06:25.660 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:06:25.660 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36801 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-18 01:06:25.660 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:06:25.660 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2119140625, Z-Position -0.16765694707163. ------
17-03-18 01:06:25.670 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:25.670 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17446 mm
17-03-18 01:06:25.670 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:06:25.670 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:25.670 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:06:25.670 -07 000000430 INF: Y Motor: Moving to 69.0426 mm, started at 68.2119 mm, delta = 0.8307 mm
17-03-18 01:06:25.670 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 38111, sync = True, waitForSettling = False)
17-03-18 01:06:25.670 -07 000000437 INF: Z Motor: Moving to -0.174461 mm, started at -0.167657 mm, distance = -6.80 um
17-03-18 01:06:25.680 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:25.680 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:25.680 -07 000000581 INF: FPGA: Recv YRDPOS 139698
17-03-18 01:06:25.690 -07 000000437 INF: FPGA: Xmit ZDACW 38111\n [Z Motor]
17-03-18 01:06:25.690 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:06:25.690 -07 000000430 INF: Y Motor: Encoder = 139698 = motor step 109139.1 = 68.2119 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:25.690 -07 000000430 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:06:25.690 -07 000000430 INF: Y Motor: Moving 1329 steps-1
17-03-18 01:06:25.690 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:06:25.700 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:06:25.700 -07 000000437 INF: FPGA: 'ZDACW 38111' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:06:25.710 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:06:25.720 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:25.720 -07 000000461 INF: FPGA: Recv ZDACR 38111
17-03-18 01:06:25.730 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:06:25.730 -07 000000437 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 01:06:25.880 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:06:25.880 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:06:25.880 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:25.880 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:06:25.880 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:06:25.880 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:25.880 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:25.880 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:06:25.880 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:25.890 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:06:25.900 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:06:25.910 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 229 ms overall
17-03-18 01:06:26.080 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 01:06:26.080 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:06:26.120 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:26.120 -07 000000576 INF: FPGA: Recv YRDPOS 141380
17-03-18 01:06:26.130 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:26.130 -07 000000430 INF: Y Motor: Encoder = 141380 = motor step 110453.1 = 69.0332 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:26.130 -07 000000430 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:06:26.130 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.092 mm/sec
17-03-18 01:06:27.080 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:27.080 -07 000000455 INF: FPGA: Recv YRDPOS 141380
17-03-18 01:06:27.090 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:27.090 -07 000000430 INF: Y Motor: Encoder = 141380 = motor step 110453.1 = 69.0332 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:27.110 -07 000000430 INF: Y Motor: After move to 69.042610, error = -0.009407, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:06:27.110 -07 000000430 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:06:27.110 -07 000000430 INF: Y Motor: Moved to 69.0332 after 1440 ms (table move)
17-03-18 01:06:27.120 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174461 mm (DAC = 38111)
17-03-18 01:06:27.120 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:27.120 -07 000000461 INF: FPGA: Recv ZSGSRD 36452
17-03-18 01:06:27.130 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:27.130 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:27.130 -07 000000591 INF: FPGA: Recv ZSGSRD 36442
17-03-18 01:06:27.140 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:27.140 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:27.140 -07 000000455 INF: FPGA: Recv ZSGSRD 36444
17-03-18 01:06:27.150 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:27.150 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:27.150 -07 000000611 INF: FPGA: Recv ZSGSRD 36459
17-03-18 01:06:27.160 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:27.160 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:27.160 -07 000000592 INF: FPGA: Recv ZSGSRD 36447
17-03-18 01:06:27.170 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:27.170 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:27.170 -07 000000461 INF: FPGA: Recv ZSGSRD 36452
17-03-18 01:06:27.180 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:06:27.180 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:27.180 -07 000000579 INF: FPGA: Recv ZSGSRD 36451
17-03-18 01:06:27.190 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:27.190 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:27.190 -07 000000462 INF: FPGA: Recv ZSGSRD 36440
17-03-18 01:06:27.200 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:27.200 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:27.200 -07 000000585 INF: FPGA: Recv ZSGSRD 36445
17-03-18 01:06:27.210 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:27.210 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:27.210 -07 000000581 INF: FPGA: Recv ZSGSRD 36443
17-03-18 01:06:27.220 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:27.220 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:27.220 -07 000000585 INF: FPGA: Recv ZPIEZORD 32165
17-03-18 01:06:27.230 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:27.230 -07 000000629 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.815 V. Piezo Error = -9.4 V.
17-03-18 01:06:27.230 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36448 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36446 (-173.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36440 (-173.5 uncal um), Max = 36459 (-173.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:06:27.230 -07 000000629 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36448, posNoise = 11, negNoise = 8
17-03-18 01:06:27.230 -07 000000629 INF: Z Motor: After move to -0.174461, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:27.230 -07 000000629 INF: Z Motor: Settle wait time = 1443 ms, measure time = 111 ms (allowed 150 ms), total time = 1554 ms
17-03-18 01:06:27.230 -07 000000629 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:06:27.230 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:06:27.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:06:27.270 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-18 01:06:27.270 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:06:27.270 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:27.270 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:27.270 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:27.270 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:06:27.270 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:27.270 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:27.270 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:27.270 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:06:27.280 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:06:27.280 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:06:27.280 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:06:27.280 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:06:27.290 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:06:27.330 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:06:27.630 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:06:27.630 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:06:27.630 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:06:27.640 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) start.
17-03-18 01:06:27.670 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:06:27.670 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 01:06:27.670 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 01:06:27.750 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:06:27.750 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:27.750 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:06:27.750 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 01:06:27.770 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:27.770 -07 000000430 INF: Autofocus start
17-03-18 01:06:27.770 -07 000000430 INF: MeasureProfile start
17-03-18 01:06:27.770 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:27.780 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:06:27.780 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:06:27.780 -07 000000430 INF: MeasureProfile done
17-03-18 01:06:27.780 -07 000000430 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:06:27.780 -07 000000430 INF: Autofocus finished
17-03-18 01:06:27.980 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:06:27.980 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:06:27.980 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.033203125, Z-position -0.174473036154038. ----------
17-03-18 01:06:27.980 -07 000000610 INF: Cycle	83	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:06:27.990 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36591, sync = True, waitForSettling = True)
17-03-18 01:06:27.990 -07 000000610 INF: Z Motor: Moving to -0.167503 mm, started at -0.174473 mm, distance = 6.97 um
17-03-18 01:06:27.990 -07 000000610 INF: FPGA: Xmit ZDACW 36591\n [Z Motor]
17-03-18 01:06:27.990 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:06:28.000 -07 000000610 INF: FPGA: 'ZDACW 36591' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:28.000 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:28.000 -07 000000461 INF: FPGA: Recv ZDACR 36591
17-03-18 01:06:28.010 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:28.010 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:06:28.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:28.160 -07 000000591 INF: FPGA: Recv ZSGSRD 35368
17-03-18 01:06:28.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:28.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:28.170 -07 000000581 INF: FPGA: Recv ZSGSRD 35363
17-03-18 01:06:28.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:28.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:28.180 -07 000000444 INF: FPGA: Recv ZSGSRD 35366
17-03-18 01:06:28.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:28.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:28.190 -07 000000579 INF: FPGA: Recv ZSGSRD 35365
17-03-18 01:06:28.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:28.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:28.200 -07 000000611 INF: FPGA: Recv ZSGSRD 35361
17-03-18 01:06:28.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:28.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:28.210 -07 000000581 INF: FPGA: Recv ZSGSRD 35368
17-03-18 01:06:28.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:28.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:28.220 -07 000000437 INF: FPGA: Recv ZSGSRD 35360
17-03-18 01:06:28.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:28.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:28.230 -07 000000579 INF: FPGA: Recv ZSGSRD 35365
17-03-18 01:06:28.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:28.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:28.240 -07 000000576 INF: FPGA: Recv ZSGSRD 35364
17-03-18 01:06:28.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:28.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:28.250 -07 000000581 INF: FPGA: Recv ZSGSRD 35369
17-03-18 01:06:28.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:28.260 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:28.260 -07 000000444 INF: FPGA: Recv ZPIEZORD 30731
17-03-18 01:06:28.270 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:28.270 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -10.2 V.
17-03-18 01:06:28.270 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35365 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35365 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35360 (-166.6 uncal um), Max = 35369 (-166.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:06:28.270 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35365, posNoise = 4, negNoise = 5
17-03-18 01:06:28.270 -07 000000610 INF: Z Motor: After move to -0.167503, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:28.270 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:06:28.270 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:28.270 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:28.270 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:28.270 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:28.270 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:06:28.270 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:28.270 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:06:28.270 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:06:28.270 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:28.270 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:06:28.270 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:06:28.270 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:06:28.280 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:06:28.280 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:06:28.280 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:06:28.280 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:06:28.290 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:06:28.290 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:06:28.290 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:06:28.290 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:06:28.290 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36768 150\n [Camera]
17-03-18 01:06:28.490 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:06:28.770 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.99219,
17-03-18 01:06:28.880 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:06:28.880 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:06:28.880 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:28.880 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:28.880 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:06:28.880 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:06:28.880 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:06:28.880 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:28.880 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:28.880 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 01:06:29.070 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36768 775
17-03-18 01:06:29.220 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:06:29.280 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:06:29.280 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:06:29.280 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:29.290 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:06:29.290 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:06:29.290 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:29.290 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:29.290 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:06:29.290 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:06:29.300 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:06:29.410 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:06:29.410 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:06:29.410 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:29.410 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:29.410 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:06:29.410 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:06:29.410 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:06:29.410 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:29.410 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:29.410 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 01:06:29.600 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:06:29.600 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:06:29.600 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36768 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-18 01:06:29.600 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:06:29.600 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.033203125, Z-Position -0.167515614404511. ------
17-03-18 01:06:29.610 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:29.610 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17431 mm
17-03-18 01:06:29.610 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:06:29.610 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:06:29.610 -07 000000462 INF: Y Motor: Moving to 69.8726 mm, started at 69.0332 mm, delta = 0.8394 mm
17-03-18 01:06:29.610 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:29.610 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38079, sync = True, waitForSettling = False)
17-03-18 01:06:29.610 -07 000000455 INF: Z Motor: Moving to -0.174314 mm, started at -0.167516 mm, distance = -6.80 um
17-03-18 01:06:29.620 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:29.620 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:29.620 -07 000000576 INF: FPGA: Recv YRDPOS 141381
17-03-18 01:06:29.630 -07 000000455 INF: FPGA: Xmit ZDACW 38079\n [Z Motor]
17-03-18 01:06:29.630 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:06:29.630 -07 000000462 INF: Y Motor: Encoder = 141381 = motor step 110453.9 = 69.0337 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:29.630 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:06:29.630 -07 000000462 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:06:29.630 -07 000000462 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:06:29.640 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:06:29.640 -07 000000455 INF: FPGA: 'ZDACW 38079' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 01:06:29.650 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:06:29.660 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:29.660 -07 000000576 INF: FPGA: Recv ZDACR 38079
17-03-18 01:06:29.670 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:06:29.670 -07 000000455 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 01:06:29.810 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:06:29.810 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:06:29.810 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:29.810 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:06:29.810 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:06:29.810 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:29.820 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:29.820 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:06:29.820 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:06:29.820 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:06:29.840 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:06:29.840 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:06:30.020 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 01:06:30.020 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 395 ms overall
17-03-18 01:06:30.070 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:30.070 -07 000000444 INF: FPGA: Recv YRDPOS 143093
17-03-18 01:06:30.080 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:30.080 -07 000000462 INF: Y Motor: Encoder = 143093 = motor step 111791.4 = 69.8696 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:30.080 -07 000000462 INF: Y Motor: Position error before settling (table move) = -6 encoder counts (-0.003 mm)
17-03-18 01:06:30.080 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.125 mm/sec
17-03-18 01:06:31.030 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:31.030 -07 000000444 INF: FPGA: Recv YRDPOS 143093
17-03-18 01:06:31.040 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:31.040 -07 000000462 INF: Y Motor: Encoder = 143093 = motor step 111791.4 = 69.8696 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:31.040 -07 000000462 INF: Y Motor: After move to 69.872612, error = -0.002983, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:06:31.040 -07 000000462 INF: Y Motor: Position error after settling (table move) = -6 encoder counts (-0.003 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:06:31.040 -07 000000462 INF: Y Motor: Moved to 69.8696 after 1430 ms (table move)
17-03-18 01:06:31.040 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174314 mm (DAC = 38079)
17-03-18 01:06:31.040 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:31.050 -07 000000576 INF: FPGA: Recv ZSGSRD 36430
17-03-18 01:06:31.050 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:06:31.050 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:31.050 -07 000000462 INF: FPGA: Recv ZSGSRD 36422
17-03-18 01:06:31.060 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:31.060 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:31.060 -07 000000576 INF: FPGA: Recv ZSGSRD 36427
17-03-18 01:06:31.070 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:31.070 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:31.070 -07 000000444 INF: FPGA: Recv ZSGSRD 36425
17-03-18 01:06:31.080 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:31.080 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:31.080 -07 000000462 INF: FPGA: Recv ZSGSRD 36427
17-03-18 01:06:31.090 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:31.090 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:31.090 -07 000000444 INF: FPGA: Recv ZSGSRD 36419
17-03-18 01:06:31.100 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:31.100 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:31.100 -07 000000581 INF: FPGA: Recv ZSGSRD 36423
17-03-18 01:06:31.110 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:31.110 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:31.110 -07 000000581 INF: FPGA: Recv ZSGSRD 36426
17-03-18 01:06:31.120 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:31.120 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:31.120 -07 000000579 INF: FPGA: Recv ZSGSRD 36429
17-03-18 01:06:31.130 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:31.130 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:31.130 -07 000000444 INF: FPGA: Recv ZSGSRD 36427
17-03-18 01:06:31.140 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:31.140 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:31.140 -07 000000462 INF: FPGA: Recv ZPIEZORD 32121
17-03-18 01:06:31.150 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:31.150 -07 000000592 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.810 V. Piezo Error = -9.5 V.
17-03-18 01:06:31.150 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36426 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36426 (-173.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36419 (-173.4 uncal um), Max = 36430 (-173.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:06:31.150 -07 000000592 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36426, posNoise = 4, negNoise = 7
17-03-18 01:06:31.150 -07 000000592 INF: Z Motor: After move to -0.174314, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:31.150 -07 000000592 INF: Z Motor: Settle wait time = 1430 ms, measure time = 103 ms (allowed 150 ms), total time = 1533 ms
17-03-18 01:06:31.150 -07 000000592 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 01:06:31.200 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-18 01:06:31.200 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:06:31.200 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:31.200 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:31.200 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:31.200 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:31.200 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:06:31.200 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:31.200 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:31.200 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:06:31.210 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:06:31.210 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:06:31.220 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:06:31.220 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:06:31.220 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:06:31.270 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:06:31.570 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:06:31.570 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:06:31.570 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:06:31.570 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 644204472, 0x0, 559484976) start.
17-03-18 01:06:31.610 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:06:31.610 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:06:31.610 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 01:06:31.680 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 644204472, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 01:06:31.680 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:31.690 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:06:31.690 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:06:31.710 -07 000000576 INF: Autofocus start
17-03-18 01:06:31.710 -07 000000576 INF: MeasureProfile start
17-03-18 01:06:31.710 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:31.710 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:31.720 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:06:31.720 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:06:31.720 -07 000000576 INF: MeasureProfile done
17-03-18 01:06:31.720 -07 000000576 INF: X=-64  Z correction [um]=-0.4038377
17-03-18 01:06:31.720 -07 000000576 INF: Autofocus finished
17-03-18 01:06:31.920 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:06:31.920 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:06:31.920 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86962890625, Z-position -0.17433170348692. ----------
17-03-18 01:06:31.920 -07 000000610 INF: Cycle	83	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:06:31.930 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36503, sync = True, waitForSettling = True)
17-03-18 01:06:31.930 -07 000000610 INF: Z Motor: Moving to -0.167100 mm, started at -0.174332 mm, distance = 7.23 um
17-03-18 01:06:31.930 -07 000000610 INF: FPGA: Xmit ZDACW 36503\n [Z Motor]
17-03-18 01:06:31.930 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:06:31.940 -07 000000610 INF: FPGA: 'ZDACW 36503' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:31.940 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:31.940 -07 000000590 INF: FPGA: Recv ZDACR 36503
17-03-18 01:06:31.950 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:31.950 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:06:32.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:32.100 -07 000000590 INF: FPGA: Recv ZSGSRD 35295
17-03-18 01:06:32.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:32.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:32.110 -07 000000462 INF: FPGA: Recv ZSGSRD 35301
17-03-18 01:06:32.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:32.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:32.120 -07 000000455 INF: FPGA: Recv ZSGSRD 35302
17-03-18 01:06:32.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:32.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:32.130 -07 000000579 INF: FPGA: Recv ZSGSRD 35305
17-03-18 01:06:32.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:32.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:32.140 -07 000000576 INF: FPGA: Recv ZSGSRD 35299
17-03-18 01:06:32.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:32.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:32.150 -07 000000611 INF: FPGA: Recv ZSGSRD 35305
17-03-18 01:06:32.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:32.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:32.160 -07 000000576 INF: FPGA: Recv ZSGSRD 35299
17-03-18 01:06:32.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:32.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:32.170 -07 000000590 INF: FPGA: Recv ZSGSRD 35299
17-03-18 01:06:32.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:32.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:32.180 -07 000000579 INF: FPGA: Recv ZSGSRD 35300
17-03-18 01:06:32.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:32.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:32.190 -07 000000590 INF: FPGA: Recv ZSGSRD 35297
17-03-18 01:06:32.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:32.200 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:32.200 -07 000000585 INF: FPGA: Recv ZPIEZORD 30627
17-03-18 01:06:32.210 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:32.210 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -10.3 V.
17-03-18 01:06:32.210 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35300 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35300 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35295 (-166.2 uncal um), Max = 35305 (-166.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:06:32.210 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35300, posNoise = 5, negNoise = 5
17-03-18 01:06:32.210 -07 000000610 INF: Z Motor: After move to -0.167100, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:32.210 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:06:32.210 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:32.210 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:32.210 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:32.210 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:32.210 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:06:32.210 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:32.210 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:06:32.210 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:06:32.210 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:32.210 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:06:32.210 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:06:32.210 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:06:32.220 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:06:32.220 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:06:32.220 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:06:32.220 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:06:32.230 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:06:32.230 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:06:32.230 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:06:32.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:06:32.230 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:06:32.230 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:06:32.230 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36680 150\n [Camera]
17-03-18 01:06:32.430 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:06:32.820 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:06:32.820 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:06:32.820 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:32.820 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:32.820 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 01:06:32.830 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:06:32.830 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:06:32.830 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:32.830 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:32.830 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:06:33.010 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36680 775
17-03-18 01:06:33.160 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:06:33.220 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:06:33.220 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:06:33.220 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:33.230 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:33.230 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:06:33.230 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:06:33.230 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:06:33.230 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:33.230 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:33.240 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:06:33.350 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:06:33.350 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:06:33.350 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:33.350 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:33.350 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:06:33.350 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:06:33.350 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:06:33.360 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:33.360 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:33.360 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:06:33.540 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:06:33.540 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:06:33.540 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36680 150' command took 2 ms to send, 1308 ms to get response, and 1312 ms overall
17-03-18 01:06:33.550 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:06:33.550 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86962890625, Z-Position -0.167098040615297. ------
17-03-18 01:06:33.550 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:33.550 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17391 mm
17-03-18 01:06:33.550 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:06:33.550 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:06:33.550 -07 000000591 INF: Y Motor: Moving to 70.7026 mm, started at 69.8696 mm, delta = 0.8330 mm
17-03-18 01:06:33.550 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 37990, sync = True, waitForSettling = False)
17-03-18 01:06:33.550 -07 000000474 INF: Z Motor: Moving to -0.173907 mm, started at -0.167098 mm, distance = -6.81 um
17-03-18 01:06:33.550 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:33.560 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:33.560 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:33.560 -07 000000592 INF: FPGA: Recv YRDPOS 143094
17-03-18 01:06:33.570 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:06:33.570 -07 000000591 INF: Y Motor: Encoder = 143094 = motor step 111792.2 = 69.8701 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:33.570 -07 000000474 INF: FPGA: Xmit ZDACW 37990\n [Z Motor]
17-03-18 01:06:33.570 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:06:33.570 -07 000000591 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:06:33.570 -07 000000591 INF: Y Motor: Moving 1332 steps-6
17-03-18 01:06:33.580 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:06:33.580 -07 000000474 INF: FPGA: 'ZDACW 37990' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:06:33.590 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:06:33.600 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:33.600 -07 000000579 INF: FPGA: Recv ZDACR 37990
17-03-18 01:06:33.610 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:06:33.610 -07 000000474 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 01:06:33.760 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:06:33.760 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:06:33.760 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:33.760 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:06:33.760 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:06:33.760 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:33.760 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:33.760 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:06:33.760 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:06:33.770 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:06:33.780 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:06:33.780 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 01:06:33.960 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 01:06:33.960 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:06:34.000 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:34.000 -07 000000592 INF: FPGA: Recv YRDPOS 144782
17-03-18 01:06:34.010 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:06:34.010 -07 000000591 INF: Y Motor: Encoder = 144782 = motor step 113110.9 = 70.6943 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:34.010 -07 000000591 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 01:06:34.010 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.833 mm, average velocity = 2.114 mm/sec
17-03-18 01:06:34.130 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.015368,
17-03-18 01:06:34.960 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:34.960 -07 000000581 INF: FPGA: Recv YRDPOS 144782
17-03-18 01:06:34.970 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:34.970 -07 000000591 INF: Y Motor: Encoder = 144782 = motor step 113110.9 = 70.6943 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:34.990 -07 000000591 INF: Y Motor: After move to 70.702606, error = -0.008270, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:06:34.990 -07 000000591 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:06:34.990 -07 000000591 INF: Y Motor: Moved to 70.6943 after 1440 ms (table move)
17-03-18 01:06:35.000 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173907 mm (DAC = 37990)
17-03-18 01:06:35.000 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:35.000 -07 000000462 INF: FPGA: Recv ZSGSRD 36361
17-03-18 01:06:35.010 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:35.010 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:35.010 -07 000000629 INF: FPGA: Recv ZSGSRD 36362
17-03-18 01:06:35.020 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:35.020 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:35.020 -07 000000455 INF: FPGA: Recv ZSGSRD 36364
17-03-18 01:06:35.030 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:35.030 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:35.030 -07 000000581 INF: FPGA: Recv ZSGSRD 36361
17-03-18 01:06:35.040 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:35.040 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:35.040 -07 000000592 INF: FPGA: Recv ZSGSRD 36359
17-03-18 01:06:35.050 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:35.050 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:35.050 -07 000000581 INF: FPGA: Recv ZSGSRD 36360
17-03-18 01:06:35.060 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:35.060 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:35.060 -07 000000629 INF: FPGA: Recv ZSGSRD 36364
17-03-18 01:06:35.070 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:35.070 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:35.070 -07 000000581 INF: FPGA: Recv ZSGSRD 36355
17-03-18 01:06:35.080 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:35.080 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:35.080 -07 000000462 INF: FPGA: Recv ZSGSRD 36359
17-03-18 01:06:35.090 -07 000000585 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:35.090 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:35.090 -07 000000581 INF: FPGA: Recv ZSGSRD 36365
17-03-18 01:06:35.100 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:35.100 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:35.100 -07 000000462 INF: FPGA: Recv ZPIEZORD 32037
17-03-18 01:06:35.110 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:35.110 -07 000000585 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.797 V. Piezo Error = -9.5 V.
17-03-18 01:06:35.110 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36361 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36361 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36355 (-173.0 uncal um), Max = 36365 (-173.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:06:35.110 -07 000000585 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36361, posNoise = 4, negNoise = 6
17-03-18 01:06:35.110 -07 000000585 INF: Z Motor: After move to -0.173907, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:35.110 -07 000000585 INF: Z Motor: Settle wait time = 1443 ms, measure time = 110 ms (allowed 150 ms), total time = 1553 ms
17-03-18 01:06:35.110 -07 000000585 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:06:35.150 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 01:06:35.150 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:06:35.150 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:35.150 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:35.150 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:35.150 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:35.150 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:06:35.150 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:35.150 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:35.150 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:06:35.150 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:06:35.150 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:06:35.170 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:06:35.170 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:06:35.170 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:06:35.220 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:06:35.520 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:06:35.520 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:06:35.520 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:06:35.520 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 01:06:35.560 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:06:35.560 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:06:35.560 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:06:35.630 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:06:35.630 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:35.630 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:06:35.630 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:06:35.660 -07 000000629 INF: Autofocus start
17-03-18 01:06:35.660 -07 000000629 INF: MeasureProfile start
17-03-18 01:06:35.660 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:35.660 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:35.670 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:06:35.670 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:06:35.670 -07 000000629 INF: MeasureProfile done
17-03-18 01:06:35.670 -07 000000629 INF: X=-64  Z correction [um]=-0.4038377
17-03-18 01:06:35.670 -07 000000629 INF: Autofocus finished
17-03-18 01:06:35.870 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:06:35.870 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:06:35.870 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6943359375, Z-position -0.173914129697705. ----------
17-03-18 01:06:35.870 -07 000000610 INF: Cycle	83	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:06:35.880 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36415, sync = True, waitForSettling = True)
17-03-18 01:06:35.880 -07 000000610 INF: Z Motor: Moving to -0.166697 mm, started at -0.173914 mm, distance = 7.22 um
17-03-18 01:06:35.880 -07 000000610 INF: FPGA: Xmit ZDACW 36415\n [Z Motor]
17-03-18 01:06:35.880 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:06:35.890 -07 000000610 INF: FPGA: 'ZDACW 36415' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:35.890 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:35.890 -07 000000585 INF: FPGA: Recv ZDACR 36415
17-03-18 01:06:35.900 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:35.900 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:06:36.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:36.050 -07 000000462 INF: FPGA: Recv ZSGSRD 35247
17-03-18 01:06:36.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:36.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:36.060 -07 000000581 INF: FPGA: Recv ZSGSRD 35242
17-03-18 01:06:36.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:36.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:36.070 -07 000000585 INF: FPGA: Recv ZSGSRD 35238
17-03-18 01:06:36.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:36.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:36.080 -07 000000592 INF: FPGA: Recv ZSGSRD 35238
17-03-18 01:06:36.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:36.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:36.090 -07 000000581 INF: FPGA: Recv ZSGSRD 35243
17-03-18 01:06:36.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:36.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:36.100 -07 000000462 INF: FPGA: Recv ZSGSRD 35242
17-03-18 01:06:36.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:36.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:36.110 -07 000000581 INF: FPGA: Recv ZSGSRD 35233
17-03-18 01:06:36.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:36.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:36.120 -07 000000585 INF: FPGA: Recv ZSGSRD 35240
17-03-18 01:06:36.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:36.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:36.130 -07 000000462 INF: FPGA: Recv ZSGSRD 35242
17-03-18 01:06:36.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:36.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:36.140 -07 000000592 INF: FPGA: Recv ZSGSRD 35238
17-03-18 01:06:36.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:36.150 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:36.150 -07 000000462 INF: FPGA: Recv ZPIEZORD 30577
17-03-18 01:06:36.160 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:36.160 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -10.2 V.
17-03-18 01:06:36.160 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35240 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35241 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35233 (-165.8 uncal um), Max = 35247 (-165.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:06:36.160 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35240, posNoise = 7, negNoise = 7
17-03-18 01:06:36.160 -07 000000610 INF: Z Motor: After move to -0.166697, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:36.160 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:06:36.160 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:36.160 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:36.160 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:36.160 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:36.160 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:06:36.160 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:36.160 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:06:36.160 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:06:36.160 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:36.160 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:06:36.160 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:06:36.160 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:06:36.160 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:06:36.170 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:06:36.170 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:06:36.170 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:06:36.170 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:06:36.170 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:06:36.180 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:06:36.180 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:06:36.180 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36591 150\n [Camera]
17-03-18 01:06:36.380 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:06:36.770 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:06:36.770 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:06:36.770 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:36.770 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:36.770 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:06:36.770 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:06:36.770 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:06:36.770 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:36.770 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:36.770 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 01:06:36.960 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36591 775
17-03-18 01:06:37.110 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:06:37.170 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:06:37.170 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:06:37.170 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:37.170 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:06:37.170 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:06:37.170 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:37.170 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:37.170 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:06:37.170 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:37.180 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:06:37.230 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:06:37.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:06:37.300 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:06:37.300 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:06:37.310 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:37.310 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:37.310 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 01:06:37.310 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:06:37.310 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:06:37.310 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:37.310 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:37.310 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:06:37.490 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:06:37.490 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:06:37.490 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36591 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-18 01:06:37.490 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:06:37.490 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6943359375, Z-Position -0.166712587886791. ------
17-03-18 01:06:37.500 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:37.500 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17350 mm
17-03-18 01:06:37.500 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:06:37.500 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 37902, sync = True, waitForSettling = False)
17-03-18 01:06:37.500 -07 000000579 INF: Z Motor: Moving to -0.173504 mm, started at -0.166713 mm, distance = -6.79 um
17-03-18 01:06:37.500 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:06:37.500 -07 000000629 INF: Y Motor: Moving to 71.5326 mm, started at 70.6943 mm, delta = 0.8383 mm
17-03-18 01:06:37.500 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:37.510 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:37.510 -07 000000579 INF: FPGA: Xmit ZDACW 37902\n [Z Motor]
17-03-18 01:06:37.510 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:06:37.520 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:37.520 -07 000000579 INF: FPGA: 'ZDACW 37902' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:06:37.520 -07 000000430 INF: FPGA: Recv YRDPOS 144782
17-03-18 01:06:37.530 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:06:37.530 -07 000000629 INF: Y Motor: Encoder = 144782 = motor step 113110.9 = 70.6943 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:37.530 -07 000000629 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:06:37.530 -07 000000629 INF: Y Motor: Moving 1341 steps-17
17-03-18 01:06:37.530 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:06:37.540 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:37.540 -07 000000430 INF: FPGA: Recv ZDACR 37902
17-03-18 01:06:37.550 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:06:37.550 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:06:37.550 -07 000000579 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 01:06:37.710 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:06:37.710 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:06:37.710 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:37.710 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:06:37.710 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:06:37.710 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:37.710 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:37.710 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:06:37.710 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:06:37.720 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:06:37.730 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:06:37.730 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 225 ms overall
17-03-18 01:06:37.930 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:06:37.930 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-18 01:06:37.970 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:37.970 -07 000000592 INF: FPGA: Recv YRDPOS 146484
17-03-18 01:06:37.980 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:06:37.980 -07 000000629 INF: Y Motor: Encoder = 146484 = motor step 114440.6 = 71.5254 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:37.980 -07 000000629 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:06:37.980 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-18 01:06:38.930 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:38.930 -07 000000461 INF: FPGA: Recv YRDPOS 146485
17-03-18 01:06:38.940 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:38.940 -07 000000629 INF: Y Motor: Encoder = 146485 = motor step 114441.4 = 71.5259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:38.960 -07 000000629 INF: Y Motor: After move to 71.532608, error = -0.006729, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:06:38.960 -07 000000629 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:06:38.960 -07 000000629 INF: Y Motor: Moved to 71.5259 after 1456 ms (table move)
17-03-18 01:06:38.960 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173504 mm (DAC = 37902)
17-03-18 01:06:38.960 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:38.960 -07 000000629 INF: FPGA: Recv ZSGSRD 36300
17-03-18 01:06:38.970 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:06:38.970 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:38.970 -07 000000629 INF: FPGA: Recv ZSGSRD 36310
17-03-18 01:06:38.980 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:38.980 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:38.980 -07 000000629 INF: FPGA: Recv ZSGSRD 36298
17-03-18 01:06:38.990 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:38.990 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:38.990 -07 000000629 INF: FPGA: Recv ZSGSRD 36298
17-03-18 01:06:39.000 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:39.000 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:39.000 -07 000000579 INF: FPGA: Recv ZSGSRD 36295
17-03-18 01:06:39.010 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:39.010 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:39.010 -07 000000437 INF: FPGA: Recv ZSGSRD 36297
17-03-18 01:06:39.020 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:39.020 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:39.020 -07 000000576 INF: FPGA: Recv ZSGSRD 36297
17-03-18 01:06:39.030 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:39.030 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:39.030 -07 000000576 INF: FPGA: Recv ZSGSRD 36300
17-03-18 01:06:39.040 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:39.040 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:39.040 -07 000000576 INF: FPGA: Recv ZSGSRD 36304
17-03-18 01:06:39.050 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:39.050 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:39.050 -07 000000576 INF: FPGA: Recv ZSGSRD 36302
17-03-18 01:06:39.060 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:39.060 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:39.060 -07 000000576 INF: FPGA: Recv ZPIEZORD 31996
17-03-18 01:06:39.070 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:39.070 -07 000000591 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -9.5 V.
17-03-18 01:06:39.070 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36300 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36299 (-172.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36295 (-172.6 uncal um), Max = 36310 (-172.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:06:39.070 -07 000000591 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36300, posNoise = 10, negNoise = 5
17-03-18 01:06:39.070 -07 000000591 INF: Z Motor: After move to -0.173504, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:39.070 -07 000000591 INF: Z Motor: Settle wait time = 1460 ms, measure time = 104 ms (allowed 150 ms), total time = 1564 ms
17-03-18 01:06:39.070 -07 000000591 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 01:06:39.120 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 01:06:39.120 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:06:39.120 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:39.120 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:39.120 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:39.120 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:39.120 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:06:39.120 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:39.120 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:06:39.120 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:06:39.130 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:06:39.130 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:06:39.140 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:06:39.140 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:06:39.140 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:06:39.190 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:06:39.490 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.005817,
17-03-18 01:06:39.490 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:06:39.490 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:06:39.490 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:06:39.490 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 01:06:39.530 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:06:39.530 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:06:39.530 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall
17-03-18 01:06:39.610 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 01:06:39.610 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:39.610 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:06:39.610 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 01:06:39.630 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:39.630 -07 000000629 INF: Autofocus start
17-03-18 01:06:39.630 -07 000000629 INF: MeasureProfile start
17-03-18 01:06:39.630 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:39.640 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:06:39.640 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:06:39.640 -07 000000629 INF: MeasureProfile done
17-03-18 01:06:39.640 -07 000000629 INF: X=-32  Z correction [um]=-0.2344
17-03-18 01:06:39.640 -07 000000629 INF: Autofocus finished
17-03-18 01:06:39.840 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:06:39.840 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:06:39.840 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52587890625, Z-position -0.173522252757058. ----------
17-03-18 01:06:39.840 -07 000000610 INF: Cycle	83	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:06:39.850 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36364, sync = True, waitForSettling = True)
17-03-18 01:06:39.850 -07 000000610 INF: Z Motor: Moving to -0.166464 mm, started at -0.173522 mm, distance = 7.06 um
17-03-18 01:06:39.850 -07 000000610 INF: FPGA: Xmit ZDACW 36364\n [Z Motor]
17-03-18 01:06:39.850 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:06:39.860 -07 000000610 INF: FPGA: 'ZDACW 36364' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:39.860 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:39.860 -07 000000430 INF: FPGA: Recv ZDACR 36364
17-03-18 01:06:39.870 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:39.870 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:06:40.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:40.020 -07 000000585 INF: FPGA: Recv ZSGSRD 35201
17-03-18 01:06:40.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:40.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:40.030 -07 000000430 INF: FPGA: Recv ZSGSRD 35204
17-03-18 01:06:40.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:40.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:40.040 -07 000000437 INF: FPGA: Recv ZSGSRD 35203
17-03-18 01:06:40.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:40.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:40.050 -07 000000461 INF: FPGA: Recv ZSGSRD 35205
17-03-18 01:06:40.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:40.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:40.060 -07 000000437 INF: FPGA: Recv ZSGSRD 35198
17-03-18 01:06:40.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:40.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:40.070 -07 000000585 INF: FPGA: Recv ZSGSRD 35206
17-03-18 01:06:40.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:40.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:40.080 -07 000000437 INF: FPGA: Recv ZSGSRD 35203
17-03-18 01:06:40.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:40.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:40.090 -07 000000585 INF: FPGA: Recv ZSGSRD 35201
17-03-18 01:06:40.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:40.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:40.100 -07 000000437 INF: FPGA: Recv ZSGSRD 35204
17-03-18 01:06:40.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:40.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:40.110 -07 000000430 INF: FPGA: Recv ZSGSRD 35199
17-03-18 01:06:40.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:40.120 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:40.120 -07 000000437 INF: FPGA: Recv ZPIEZORD 30547
17-03-18 01:06:40.130 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:40.130 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.549 V. Piezo Error = -10.2 V.
17-03-18 01:06:40.130 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35202 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35203 (-165.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35198 (-165.6 uncal um), Max = 35206 (-165.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:06:40.130 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35202, posNoise = 4, negNoise = 4
17-03-18 01:06:40.130 -07 000000610 INF: Z Motor: After move to -0.166464, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:40.130 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:06:40.130 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:40.130 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:40.130 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:40.130 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:40.130 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:06:40.130 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:06:40.130 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:06:40.130 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:40.130 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:06:40.130 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:06:40.130 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:06:40.130 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:06:40.140 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:06:40.140 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:06:40.140 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:06:40.140 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:06:40.150 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:06:40.150 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:06:40.150 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:06:40.150 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:06:40.150 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36540 150\n [Camera]
17-03-18 01:06:40.350 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:06:40.740 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:06:40.740 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:06:40.740 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:40.740 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:40.740 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 01:06:40.740 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:06:40.740 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:06:40.740 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:40.740 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:40.740 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 01:06:40.930 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36540 775
17-03-18 01:06:41.080 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:06:41.140 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:06:41.140 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:06:41.140 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:41.140 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:41.140 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:06:41.140 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:06:41.140 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:06:41.140 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:41.150 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:41.150 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:06:41.270 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:06:41.270 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:06:41.270 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:41.270 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:41.270 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 01:06:41.270 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:06:41.270 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:06:41.420 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:41.420 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:41.420 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:06:41.460 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:06:41.460 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:06:41.460 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36540 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-18 01:06:41.460 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:06:41.460 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52587890625, Z-Position -0.166468467825404. ------
17-03-18 01:06:41.470 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17327 mm
17-03-18 01:06:41.470 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:41.470 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:06:41.470 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:41.470 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:06:41.470 -07 000000611 INF: Y Motor: Moving to 72.3626 mm, started at 71.5259 mm, delta = 0.8367 mm
17-03-18 01:06:41.470 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 37851, sync = True, waitForSettling = False)
17-03-18 01:06:41.470 -07 000000444 INF: Z Motor: Moving to -0.173271 mm, started at -0.166468 mm, distance = -6.80 um
17-03-18 01:06:41.480 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:41.480 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:41.480 -07 000000474 INF: FPGA: Recv YRDPOS 146485
17-03-18 01:06:41.490 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:06:41.490 -07 000000611 INF: Y Motor: Encoder = 146485 = motor step 114441.4 = 71.5259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:41.490 -07 000000611 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:06:41.490 -07 000000611 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:06:41.490 -07 000000444 INF: FPGA: Xmit ZDACW 37851\n [Z Motor]
17-03-18 01:06:41.490 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:06:41.500 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:06:41.500 -07 000000444 INF: FPGA: 'ZDACW 37851' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:06:41.510 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:06:41.520 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:41.520 -07 000000474 INF: FPGA: Recv ZDACR 37851
17-03-18 01:06:41.530 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:06:41.530 -07 000000444 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 01:06:41.680 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 414 ms.
17-03-18 01:06:41.680 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 01:06:41.680 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:41.690 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:06:41.690 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 420 ms.
17-03-18 01:06:41.700 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:06:41.700 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:06:41.820 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:06:41.820 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:06:41.820 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:41.820 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:06:41.830 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:06:41.880 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:06:41.880 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:06:41.930 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:41.930 -07 000000461 INF: FPGA: Recv YRDPOS 148184
17-03-18 01:06:41.940 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:41.940 -07 000000611 INF: Y Motor: Encoder = 148184 = motor step 115768.8 = 72.3555 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:41.940 -07 000000611 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:06:41.940 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.108 mm/sec
17-03-18 01:06:42.230 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:06:42.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:06:42.890 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:42.890 -07 000000592 INF: FPGA: Recv YRDPOS 148184
17-03-18 01:06:42.900 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:42.900 -07 000000611 INF: Y Motor: Encoder = 148184 = motor step 115768.8 = 72.3555 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:42.920 -07 000000611 INF: Y Motor: After move to 72.362610, error = -0.007141, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:06:42.920 -07 000000611 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:06:42.920 -07 000000611 INF: Y Motor: Moved to 72.3555 after 1447 ms (table move)
17-03-18 01:06:42.920 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173271 mm (DAC = 37851)
17-03-18 01:06:42.920 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:42.930 -07 000000611 INF: FPGA: Recv ZSGSRD 36265
17-03-18 01:06:42.930 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 01:06:42.930 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:42.930 -07 000000611 INF: FPGA: Recv ZSGSRD 36258
17-03-18 01:06:42.940 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:06:42.940 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:42.940 -07 000000592 INF: FPGA: Recv ZSGSRD 36260
17-03-18 01:06:42.950 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:06:42.950 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:42.950 -07 000000592 INF: FPGA: Recv ZSGSRD 36262
17-03-18 01:06:42.960 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:42.960 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:42.960 -07 000000592 INF: FPGA: Recv ZSGSRD 36266
17-03-18 01:06:42.970 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:42.970 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:42.970 -07 000000461 INF: FPGA: Recv ZSGSRD 36258
17-03-18 01:06:42.980 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:42.980 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:42.980 -07 000000461 INF: FPGA: Recv ZSGSRD 36263
17-03-18 01:06:42.990 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:42.990 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:42.990 -07 000000461 INF: FPGA: Recv ZSGSRD 36266
17-03-18 01:06:43.000 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:43.000 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:43.000 -07 000000461 INF: FPGA: Recv ZSGSRD 36262
17-03-18 01:06:43.010 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:43.010 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:43.010 -07 000000461 INF: FPGA: Recv ZSGSRD 36268
17-03-18 01:06:43.020 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:43.020 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:43.020 -07 000000461 INF: FPGA: Recv ZPIEZORD 31924
17-03-18 01:06:43.030 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:43.030 -07 000000437 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.776 V. Piezo Error = -9.6 V.
17-03-18 01:06:43.030 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36263 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36262 (-172.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36258 (-172.4 uncal um), Max = 36268 (-172.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:06:43.030 -07 000000437 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36263, posNoise = 5, negNoise = 5
17-03-18 01:06:43.030 -07 000000437 INF: Z Motor: After move to -0.173271, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:43.030 -07 000000437 INF: Z Motor: Settle wait time = 1450 ms, measure time = 103 ms (allowed 150 ms), total time = 1553 ms
17-03-18 01:06:43.030 -07 000000437 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 01:06:43.080 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 01:06:43.080 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:06:43.080 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:43.080 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:43.080 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:43.080 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:43.080 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:06:43.080 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:43.080 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:06:43.080 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:06:43.090 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:06:43.090 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:06:43.100 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:06:43.100 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:06:43.100 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:06:43.150 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:06:43.440 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:06:43.440 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:06:43.450 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:06:43.450 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-18 01:06:43.480 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:06:43.480 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 01:06:43.490 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:06:43.560 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:06:43.560 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:43.560 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:06:43.560 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:06:43.590 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:43.590 -07 000000585 INF: Autofocus start
17-03-18 01:06:43.590 -07 000000585 INF: MeasureProfile start
17-03-18 01:06:43.590 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:43.600 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:06:43.600 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:06:43.600 -07 000000585 INF: MeasureProfile done
17-03-18 01:06:43.600 -07 000000585 INF: X=-64  Z correction [um]=-0.4038377
17-03-18 01:06:43.600 -07 000000585 INF: Autofocus finished
17-03-18 01:06:43.800 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:06:43.800 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:06:43.800 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35546875, Z-position -0.173284556907813. ----------
17-03-18 01:06:43.800 -07 000000610 INF: Cycle	83	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:06:43.810 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36275, sync = True, waitForSettling = True)
17-03-18 01:06:43.810 -07 000000610 INF: Z Motor: Moving to -0.166056 mm, started at -0.173285 mm, distance = 7.23 um
17-03-18 01:06:43.810 -07 000000610 INF: FPGA: Xmit ZDACW 36275\n [Z Motor]
17-03-18 01:06:43.810 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:06:43.820 -07 000000610 INF: FPGA: 'ZDACW 36275' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:06:43.820 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:43.820 -07 000000591 INF: FPGA: Recv ZDACR 36275
17-03-18 01:06:43.830 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:43.830 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:06:43.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:43.980 -07 000000444 INF: FPGA: Recv ZSGSRD 35139
17-03-18 01:06:43.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:43.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:43.990 -07 000000455 INF: FPGA: Recv ZSGSRD 35145
17-03-18 01:06:44.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:44.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:44.000 -07 000000430 INF: FPGA: Recv ZSGSRD 35141
17-03-18 01:06:44.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:44.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:44.010 -07 000000437 INF: FPGA: Recv ZSGSRD 35141
17-03-18 01:06:44.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:44.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:44.020 -07 000000430 INF: FPGA: Recv ZSGSRD 35131
17-03-18 01:06:44.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:44.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:44.030 -07 000000455 INF: FPGA: Recv ZSGSRD 35147
17-03-18 01:06:44.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:44.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:44.040 -07 000000430 INF: FPGA: Recv ZSGSRD 35143
17-03-18 01:06:44.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:44.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:44.050 -07 000000611 INF: FPGA: Recv ZSGSRD 35142
17-03-18 01:06:44.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:44.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:44.060 -07 000000455 INF: FPGA: Recv ZSGSRD 35137
17-03-18 01:06:44.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:44.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:44.070 -07 000000437 INF: FPGA: Recv ZSGSRD 35139
17-03-18 01:06:44.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:44.080 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:44.080 -07 000000455 INF: FPGA: Recv ZPIEZORD 30464
17-03-18 01:06:44.090 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:44.090 -07 000000610 INF: Z Motor: Piezo is near 45.1 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.535 V. Piezo Error = -10.3 V.
17-03-18 01:06:44.090 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35140 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35141 (-165.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35131 (-165.1 uncal um), Max = 35147 (-165.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:06:44.090 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35140, posNoise = 7, negNoise = 9
17-03-18 01:06:44.090 -07 000000610 INF: Z Motor: After move to -0.166056, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:44.090 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:06:44.090 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:44.090 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:44.090 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:44.090 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:44.090 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:06:44.090 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:44.090 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:06:44.090 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:06:44.090 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:44.090 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:06:44.090 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:06:44.090 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:06:44.100 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:06:44.100 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:06:44.100 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:06:44.100 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:06:44.110 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 01:06:44.110 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:06:44.110 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 01:06:44.110 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:06:44.110 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36452 150\n [Camera]
17-03-18 01:06:44.310 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:06:44.700 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:06:44.700 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:06:44.710 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:44.710 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:06:44.710 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:06:44.710 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:44.710 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:44.710 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 01:06:44.710 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:44.710 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2470426896, 0x0, 391868352) start.
17-03-18 01:06:44.850 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.007176,
17-03-18 01:06:44.890 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36452 775
17-03-18 01:06:45.040 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:06:45.090 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 01:06:45.090 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 01:06:45.090 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:45.090 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:45.100 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:06:45.100 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2470426896, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 01:06:45.100 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:06:45.100 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:45.100 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:45.100 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:06:45.230 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:06:45.230 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:06:45.230 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:45.340 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:06:45.340 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:06:45.350 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:45.350 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:45.350 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 01:06:45.350 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:45.350 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:06:45.420 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:06:45.420 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:06:45.420 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36452 150' command took 2 ms to send, 1309 ms to get response, and 1313 ms overall
17-03-18 01:06:45.430 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:06:45.430 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35546875, Z-Position -0.166070166672615. ------
17-03-18 01:06:45.430 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:45.430 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17287 mm
17-03-18 01:06:45.430 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:06:45.430 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:06:45.430 -07 000000592 INF: Y Motor: Moving to 73.1926 mm, started at 72.3555 mm, delta = 0.8371 mm
17-03-18 01:06:45.430 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 37763, sync = True, waitForSettling = False)
17-03-18 01:06:45.430 -07 000000585 INF: Z Motor: Moving to -0.172868 mm, started at -0.166070 mm, distance = -6.80 um
17-03-18 01:06:45.430 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:45.440 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:06:45.440 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:45.440 -07 000000590 INF: FPGA: Recv YRDPOS 148185
17-03-18 01:06:45.450 -07 000000585 INF: FPGA: Xmit ZDACW 37763\n [Z Motor]
17-03-18 01:06:45.450 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:06:45.450 -07 000000592 INF: Y Motor: Encoder = 148185 = motor step 115769.5 = 72.3560 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:45.450 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:06:45.450 -07 000000592 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:06:45.450 -07 000000592 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:06:45.460 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:06:45.460 -07 000000585 INF: FPGA: 'ZDACW 37763' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:06:45.470 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:06:45.480 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:45.480 -07 000000590 INF: FPGA: Recv ZDACR 37763
17-03-18 01:06:45.490 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:06:45.490 -07 000000585 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 01:06:45.660 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:06:45.660 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:06:45.750 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:06:45.750 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:06:45.750 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:45.750 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:06:45.750 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:06:45.750 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:45.750 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:45.750 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:45.750 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 01:06:45.760 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:06:45.840 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:06:45.840 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 01:06:45.880 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:45.890 -07 000000629 INF: FPGA: Recv YRDPOS 149878
17-03-18 01:06:45.890 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:06:45.890 -07 000000592 INF: Y Motor: Encoder = 149878 = motor step 117092.2 = 73.1826 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:45.890 -07 000000592 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:06:45.890 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.837 mm, average velocity = 2.136 mm/sec
17-03-18 01:06:46.840 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:46.840 -07 000000461 INF: FPGA: Recv YRDPOS 149878
17-03-18 01:06:46.850 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:46.850 -07 000000592 INF: Y Motor: Encoder = 149878 = motor step 117092.2 = 73.1826 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:46.870 -07 000000592 INF: Y Motor: After move to 73.192604, error = -0.009987, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:06:46.870 -07 000000592 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:06:46.870 -07 000000592 INF: Y Motor: Moved to 73.1826 after 1439 ms (table move)
17-03-18 01:06:46.880 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172868 mm (DAC = 37763)
17-03-18 01:06:46.880 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:46.880 -07 000000437 INF: FPGA: Recv ZSGSRD 36206
17-03-18 01:06:46.890 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:06:46.890 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:46.890 -07 000000461 INF: FPGA: Recv ZSGSRD 36206
17-03-18 01:06:46.900 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:46.900 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:46.900 -07 000000585 INF: FPGA: Recv ZSGSRD 36197
17-03-18 01:06:46.910 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:46.910 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:46.910 -07 000000461 INF: FPGA: Recv ZSGSRD 36198
17-03-18 01:06:46.920 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:46.920 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:46.920 -07 000000592 INF: FPGA: Recv ZSGSRD 36198
17-03-18 01:06:46.930 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:46.930 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:46.930 -07 000000461 INF: FPGA: Recv ZSGSRD 36197
17-03-18 01:06:46.940 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:46.940 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:46.940 -07 000000592 INF: FPGA: Recv ZSGSRD 36201
17-03-18 01:06:46.950 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:46.950 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:46.950 -07 000000585 INF: FPGA: Recv ZSGSRD 36200
17-03-18 01:06:46.960 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:46.960 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:46.960 -07 000000461 INF: FPGA: Recv ZSGSRD 36206
17-03-18 01:06:46.970 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:46.970 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:46.970 -07 000000585 INF: FPGA: Recv ZSGSRD 36202
17-03-18 01:06:46.980 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:46.980 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:46.980 -07 000000579 INF: FPGA: Recv ZPIEZORD 31872
17-03-18 01:06:46.990 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:46.990 -07 000000611 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.762 V. Piezo Error = -9.5 V.
17-03-18 01:06:46.990 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36201 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36200 (-172.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36197 (-172.0 uncal um), Max = 36206 (-172.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:06:46.990 -07 000000611 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36201, posNoise = 5, negNoise = 4
17-03-18 01:06:46.990 -07 000000611 INF: Z Motor: After move to -0.172868, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:46.990 -07 000000611 INF: Z Motor: Settle wait time = 1443 ms, measure time = 110 ms (allowed 150 ms), total time = 1553 ms
17-03-18 01:06:46.990 -07 000000611 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:06:47.030 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-18 01:06:47.030 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:06:47.030 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:47.030 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:47.030 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:47.030 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:47.030 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:06:47.030 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:47.030 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:47.030 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:06:47.040 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:06:47.040 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:06:47.050 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:06:47.050 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 01:06:47.050 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:06:47.090 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:06:47.230 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:06:47.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:06:47.390 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:06:47.390 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:06:47.390 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:06:47.400 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-18 01:06:47.430 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:06:47.430 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:06:47.430 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:06:47.520 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:06:47.520 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:47.520 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:06:47.520 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:06:47.630 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:47.630 -07 000000590 INF: Autofocus start
17-03-18 01:06:47.630 -07 000000590 INF: MeasureProfile start
17-03-18 01:06:47.630 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:47.640 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:06:47.640 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:06:47.640 -07 000000590 INF: MeasureProfile done
17-03-18 01:06:47.640 -07 000000590 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:06:47.640 -07 000000590 INF: Autofocus finished
17-03-18 01:06:47.840 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:06:47.840 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:06:47.840 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1826171875, Z-position -0.172886255755023. ----------
17-03-18 01:06:47.840 -07 000000610 INF: Cycle	83	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:06:47.850 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36243, sync = True, waitForSettling = True)
17-03-18 01:06:47.850 -07 000000610 INF: Z Motor: Moving to -0.165910 mm, started at -0.172886 mm, distance = 6.98 um
17-03-18 01:06:47.850 -07 000000610 INF: FPGA: Xmit ZDACW 36243\n [Z Motor]
17-03-18 01:06:47.850 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:06:47.860 -07 000000610 INF: FPGA: 'ZDACW 36243' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:06:47.860 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:47.860 -07 000000585 INF: FPGA: Recv ZDACR 36243
17-03-18 01:06:47.870 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:47.870 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:06:48.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:48.020 -07 000000579 INF: FPGA: Recv ZSGSRD 35120
17-03-18 01:06:48.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:48.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:48.030 -07 000000592 INF: FPGA: Recv ZSGSRD 35121
17-03-18 01:06:48.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:48.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:48.040 -07 000000579 INF: FPGA: Recv ZSGSRD 35119
17-03-18 01:06:48.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:48.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:48.050 -07 000000592 INF: FPGA: Recv ZSGSRD 35115
17-03-18 01:06:48.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:48.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:48.060 -07 000000579 INF: FPGA: Recv ZSGSRD 35114
17-03-18 01:06:48.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:48.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:48.070 -07 000000585 INF: FPGA: Recv ZSGSRD 35120
17-03-18 01:06:48.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:48.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:48.080 -07 000000592 INF: FPGA: Recv ZSGSRD 35118
17-03-18 01:06:48.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:48.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:48.090 -07 000000581 INF: FPGA: Recv ZSGSRD 35125
17-03-18 01:06:48.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:48.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:48.100 -07 000000461 INF: FPGA: Recv ZSGSRD 35116
17-03-18 01:06:48.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:48.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:48.110 -07 000000579 INF: FPGA: Recv ZSGSRD 35108
17-03-18 01:06:48.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:48.120 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:48.120 -07 000000461 INF: FPGA: Recv ZPIEZORD 30448
17-03-18 01:06:48.130 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:48.130 -07 000000610 INF: Z Motor: Piezo is near 45.0 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.530 V. Piezo Error = -10.3 V.
17-03-18 01:06:48.130 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35118 (-165.1 uncal um), Error = 0.8 uncal um, Median = 35118 (-165.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35108 (-165.0 uncal um), Max = 35125 (-165.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:06:48.130 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35118, posNoise = 7, negNoise = 10
17-03-18 01:06:48.130 -07 000000610 INF: Z Motor: After move to -0.165910, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:48.130 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:06:48.130 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:48.130 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:48.130 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:48.130 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:48.130 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:06:48.130 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:06:48.130 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:06:48.130 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:48.130 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:06:48.130 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:06:48.130 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:48.130 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:06:48.140 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:06:48.140 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:06:48.140 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:06:48.140 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:06:48.150 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:06:48.150 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:06:48.150 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:06:48.150 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:06:48.150 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36419 150\n [Camera]
17-03-18 01:06:48.350 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:06:48.740 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:06:48.740 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:06:48.740 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:48.740 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:06:48.740 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:06:48.740 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:48.750 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:48.750 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 01:06:48.750 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:48.750 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 01:06:48.930 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36419 775
17-03-18 01:06:49.080 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:06:49.140 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:06:49.140 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:06:49.140 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:49.150 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:06:49.150 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:49.150 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:06:49.150 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:06:49.150 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:49.150 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:49.160 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:06:49.270 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:06:49.270 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:06:49.270 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:49.270 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:49.270 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2466021592, 0x0, 391868352) start.
17-03-18 01:06:49.270 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:06:49.270 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:06:49.270 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:49.270 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:49.270 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2501443856, 0x0, 418435064) start.
17-03-18 01:06:49.460 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:06:49.460 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:06:49.460 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36419 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-18 01:06:49.460 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:06:49.460 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1826171875, Z-Position -0.165928834005496. ------
17-03-18 01:06:49.470 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:49.470 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17272 mm
17-03-18 01:06:49.470 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:06:49.470 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:49.470 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 37730, sync = True, waitForSettling = False)
17-03-18 01:06:49.470 -07 000000581 INF: Z Motor: Moving to -0.172717 mm, started at -0.165929 mm, distance = -6.79 um
17-03-18 01:06:49.470 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:06:49.470 -07 000000437 INF: Y Motor: Moving to 74.0226 mm, started at 73.1826 mm, delta = 0.8400 mm
17-03-18 01:06:49.480 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:49.480 -07 000000581 INF: FPGA: Xmit ZDACW 37730\n [Z Motor]
17-03-18 01:06:49.480 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:06:49.490 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:49.490 -07 000000581 INF: FPGA: 'ZDACW 37730' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:06:49.490 -07 000000585 INF: FPGA: Recv YRDPOS 149878
17-03-18 01:06:49.500 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:06:49.500 -07 000000437 INF: Y Motor: Encoder = 149878 = motor step 117092.2 = 73.1826 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:49.500 -07 000000437 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:06:49.500 -07 000000437 INF: Y Motor: Moving 1344 steps-20
17-03-18 01:06:49.500 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:06:49.510 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:49.510 -07 000000585 INF: FPGA: Recv ZDACR 37730
17-03-18 01:06:49.520 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:06:49.520 -07 000000581 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 01:06:49.520 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:06:49.660 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2501443856, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:06:49.660 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:06:49.660 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:49.660 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2466021592, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:06:49.660 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:06:49.660 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:49.660 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:49.670 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:06:49.670 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:06:49.670 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:06:49.700 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:06:49.700 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 01:06:49.890 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:06:49.890 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:06:49.930 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:49.930 -07 000000579 INF: FPGA: Recv YRDPOS 151581
17-03-18 01:06:49.940 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:49.940 -07 000000437 INF: Y Motor: Encoder = 151581 = motor step 118422.7 = 74.0142 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:49.940 -07 000000437 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 01:06:49.940 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 01:06:50.210 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.027603,
17-03-18 01:06:50.890 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:50.890 -07 000000592 INF: FPGA: Recv YRDPOS 151582
17-03-18 01:06:50.900 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:50.900 -07 000000437 INF: Y Motor: Encoder = 151582 = motor step 118423.4 = 74.0146 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:50.920 -07 000000437 INF: Y Motor: After move to 74.022606, error = -0.007957, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:06:50.920 -07 000000437 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:06:50.920 -07 000000437 INF: Y Motor: Moved to 74.0146 after 1442 ms (table move)
17-03-18 01:06:50.920 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172717 mm (DAC = 37730)
17-03-18 01:06:50.920 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:50.920 -07 000000579 INF: FPGA: Recv ZSGSRD 36183
17-03-18 01:06:50.930 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:06:50.930 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:50.930 -07 000000437 INF: FPGA: Recv ZSGSRD 36165
17-03-18 01:06:50.940 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:50.940 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:50.940 -07 000000579 INF: FPGA: Recv ZSGSRD 36178
17-03-18 01:06:50.950 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:50.950 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:50.950 -07 000000581 INF: FPGA: Recv ZSGSRD 36178
17-03-18 01:06:50.960 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:50.960 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:50.960 -07 000000579 INF: FPGA: Recv ZSGSRD 36179
17-03-18 01:06:50.970 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:50.970 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:50.970 -07 000000592 INF: FPGA: Recv ZSGSRD 36180
17-03-18 01:06:50.980 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:50.980 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:50.980 -07 000000585 INF: FPGA: Recv ZSGSRD 36174
17-03-18 01:06:50.990 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:50.990 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:50.990 -07 000000581 INF: FPGA: Recv ZSGSRD 36175
17-03-18 01:06:51.000 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:51.000 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:51.000 -07 000000592 INF: FPGA: Recv ZSGSRD 36178
17-03-18 01:06:51.010 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:51.010 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:51.010 -07 000000581 INF: FPGA: Recv ZSGSRD 36178
17-03-18 01:06:51.020 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:51.020 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:51.020 -07 000000585 INF: FPGA: Recv ZPIEZORD 31821
17-03-18 01:06:51.030 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:51.030 -07 000000629 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.757 V. Piezo Error = -9.6 V.
17-03-18 01:06:51.030 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36177 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36178 (-171.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36165 (-171.8 uncal um), Max = 36183 (-171.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 01:06:51.030 -07 000000629 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36177, posNoise = 6, negNoise = 12
17-03-18 01:06:51.030 -07 000000629 INF: Z Motor: After move to -0.172717, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:51.030 -07 000000629 INF: Z Motor: Settle wait time = 1446 ms, measure time = 107 ms (allowed 150 ms), total time = 1553 ms
17-03-18 01:06:51.030 -07 000000629 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:06:51.080 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-18 01:06:51.080 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:06:51.080 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:51.080 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:51.080 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:51.080 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:51.080 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:06:51.080 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:51.090 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:51.090 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:06:51.090 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:06:51.090 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:06:51.100 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:06:51.100 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:06:51.100 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:06:51.150 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:06:51.450 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:06:51.450 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:06:51.450 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:06:51.580 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:06:51.580 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 01:06:51.580 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 460 ms to get response, and 471 ms overall
17-03-18 01:06:51.580 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 644204472, 0x0, 559484976) start.
17-03-18 01:06:51.690 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 644204472, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:06:51.690 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:51.690 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:06:51.690 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 241 ms.
17-03-18 01:06:51.780 -07 000000585 INF: Autofocus start
17-03-18 01:06:51.780 -07 000000585 INF: MeasureProfile start
17-03-18 01:06:51.780 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:51.780 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:51.790 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:06:51.790 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:06:51.790 -07 000000585 INF: MeasureProfile done
17-03-18 01:06:51.790 -07 000000585 INF: X=-48  Z correction [um]=-0.3191189
17-03-18 01:06:51.790 -07 000000585 INF: Autofocus finished
17-03-18 01:06:51.990 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:06:51.990 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:06:51.990 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0146484375, Z-position -0.172732074663621. ----------
17-03-18 01:06:52.000 -07 000000610 INF: Cycle	83	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:06:52.000 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36173, sync = True, waitForSettling = True)
17-03-18 01:06:52.000 -07 000000610 INF: Z Motor: Moving to -0.165589 mm, started at -0.172732 mm, distance = 7.14 um
17-03-18 01:06:52.000 -07 000000610 INF: FPGA: Xmit ZDACW 36173\n [Z Motor]
17-03-18 01:06:52.000 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:06:52.010 -07 000000610 INF: FPGA: 'ZDACW 36173' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:52.010 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:52.010 -07 000000581 INF: FPGA: Recv ZDACR 36173
17-03-18 01:06:52.020 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:52.020 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:06:52.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:52.170 -07 000000437 INF: FPGA: Recv ZSGSRD 35072
17-03-18 01:06:52.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:52.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:52.180 -07 000000579 INF: FPGA: Recv ZSGSRD 35063
17-03-18 01:06:52.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:52.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:52.190 -07 000000437 INF: FPGA: Recv ZSGSRD 35066
17-03-18 01:06:52.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:52.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:52.200 -07 000000581 INF: FPGA: Recv ZSGSRD 35068
17-03-18 01:06:52.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:52.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:52.210 -07 000000437 INF: FPGA: Recv ZSGSRD 35070
17-03-18 01:06:52.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:52.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:52.220 -07 000000590 INF: FPGA: Recv ZSGSRD 35074
17-03-18 01:06:52.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:52.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:52.230 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:06:52.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:06:52.230 -07 000000585 INF: FPGA: Recv ZSGSRD 35064
17-03-18 01:06:52.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:52.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:52.240 -07 000000579 INF: FPGA: Recv ZSGSRD 35067
17-03-18 01:06:52.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:52.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:52.250 -07 000000629 INF: FPGA: Recv ZSGSRD 35067
17-03-18 01:06:52.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:52.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:52.260 -07 000000579 INF: FPGA: Recv ZSGSRD 35063
17-03-18 01:06:52.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:52.270 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:52.270 -07 000000590 INF: FPGA: Recv ZPIEZORD 30372
17-03-18 01:06:52.280 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:52.280 -07 000000610 INF: Z Motor: Piezo is near 44.9 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.520 V. Piezo Error = -10.3 V.
17-03-18 01:06:52.280 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.6 um, Read 10 ADC samples: Avg = 35067 (-164.7 uncal um), Error = 0.9 uncal um, Median = 35067 (-164.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35063 (-164.7 uncal um), Max = 35074 (-164.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:06:52.280 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35067, posNoise = 7, negNoise = 4
17-03-18 01:06:52.280 -07 000000610 INF: Z Motor: After move to -0.165589, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:52.280 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:06:52.280 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:52.280 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:52.280 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:52.280 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:52.280 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:06:52.280 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:06:52.280 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:06:52.280 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:52.280 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:06:52.280 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:06:52.280 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:06:52.280 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:06:52.290 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:06:52.290 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:06:52.290 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:06:52.290 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:06:52.300 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:06:52.300 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:06:52.300 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:06:52.300 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:06:52.300 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36350 150\n [Camera]
17-03-18 01:06:52.500 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:06:52.890 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:06:52.890 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:06:52.890 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:52.890 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:52.890 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:06:52.890 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:06:52.890 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:06:52.890 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:52.890 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:52.890 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:06:53.080 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36350 775
17-03-18 01:06:53.230 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:06:53.290 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:06:53.290 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:06:53.290 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:53.290 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:06:53.290 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:06:53.290 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:53.300 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:53.300 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:06:53.300 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:06:53.310 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:06:53.420 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:06:53.420 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:06:53.420 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:53.420 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:53.420 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:06:53.420 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:06:53.420 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:06:53.430 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:53.430 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:53.430 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:06:53.610 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:06:53.610 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:06:53.610 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36350 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-18 01:06:53.620 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:06:53.620 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0146484375, Z-Position -0.165601199186266. ------
17-03-18 01:06:53.730 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:53.730 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17240 mm
17-03-18 01:06:53.730 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:06:53.730 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:53.730 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:06:53.730 -07 000000591 INF: Y Motor: Moving to 74.8526 mm, started at 74.0146 mm, delta = 0.8380 mm
17-03-18 01:06:53.740 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 37660, sync = True, waitForSettling = False)
17-03-18 01:06:53.740 -07 000000585 INF: Z Motor: Moving to -0.172396 mm, started at -0.165601 mm, distance = -6.80 um
17-03-18 01:06:53.740 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:53.740 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:06:53.740 -07 000000461 INF: FPGA: Recv YRDPOS 151582
17-03-18 01:06:53.750 -07 000000585 INF: FPGA: Xmit ZDACW 37660\n [Z Motor]
17-03-18 01:06:53.750 -07 000000591 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:53.750 -07 000000591 INF: Y Motor: Encoder = 151582 = motor step 118423.4 = 74.0146 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:53.750 -07 000000591 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:06:53.750 -07 000000591 INF: Y Motor: Moving 1341 steps-17
17-03-18 01:06:53.750 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:06:53.760 -07 000000585 INF: FPGA: 'ZDACW 37660' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:06:53.760 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:06:53.770 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:06:53.780 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:53.780 -07 000000462 INF: FPGA: Recv ZDACR 37660
17-03-18 01:06:53.790 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:06:53.790 -07 000000585 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 01:06:53.820 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:06:53.820 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:06:53.820 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:53.820 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:06:53.820 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:06:53.820 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:53.830 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:53.830 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:06:53.830 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:06:53.830 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:06:53.960 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:06:53.960 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 01:06:54.140 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 01:06:54.140 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:06:54.170 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:54.170 -07 000000444 INF: FPGA: Recv YRDPOS 153269
17-03-18 01:06:54.180 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:06:54.180 -07 000000591 INF: Y Motor: Encoder = 153269 = motor step 119741.4 = 74.8384 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:54.180 -07 000000591 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:06:54.180 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 01:06:55.130 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:55.130 -07 000000592 INF: FPGA: Recv YRDPOS 153269
17-03-18 01:06:55.140 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:55.140 -07 000000591 INF: Y Motor: Encoder = 153269 = motor step 119741.4 = 74.8384 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:55.150 -07 000000591 INF: Y Motor: After move to 74.852608, error = -0.014229, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:06:55.150 -07 000000591 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:06:55.150 -07 000000591 INF: Y Motor: Moved to 74.8384 after 1418 ms (table move)
17-03-18 01:06:55.160 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172396 mm (DAC = 37660)
17-03-18 01:06:55.160 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:55.160 -07 000000591 INF: FPGA: Recv ZSGSRD 36123
17-03-18 01:06:55.170 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:55.170 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:55.170 -07 000000579 INF: FPGA: Recv ZSGSRD 36125
17-03-18 01:06:55.180 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:55.180 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:55.180 -07 000000591 INF: FPGA: Recv ZSGSRD 36134
17-03-18 01:06:55.190 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:55.190 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:55.190 -07 000000579 INF: FPGA: Recv ZSGSRD 36129
17-03-18 01:06:55.200 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:55.200 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:55.200 -07 000000462 INF: FPGA: Recv ZSGSRD 36134
17-03-18 01:06:55.210 -07 000000437 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:55.210 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:55.210 -07 000000590 INF: FPGA: Recv ZSGSRD 36124
17-03-18 01:06:55.220 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:55.220 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:55.220 -07 000000629 INF: FPGA: Recv ZSGSRD 36126
17-03-18 01:06:55.230 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:06:55.230 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:55.230 -07 000000590 INF: FPGA: Recv ZSGSRD 36128
17-03-18 01:06:55.240 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:55.240 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:55.240 -07 000000590 INF: FPGA: Recv ZSGSRD 36123
17-03-18 01:06:55.250 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:55.260 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:55.260 -07 000000579 INF: FPGA: Recv ZSGSRD 36129
17-03-18 01:06:55.270 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:06:55.270 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:55.270 -07 000000590 INF: FPGA: Recv ZPIEZORD 31803
17-03-18 01:06:55.280 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:55.280 -07 000000437 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.747 V. Piezo Error = -9.5 V.
17-03-18 01:06:55.280 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36128 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36127 (-171.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36123 (-171.5 uncal um), Max = 36134 (-171.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:06:55.280 -07 000000437 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36128, posNoise = 6, negNoise = 5
17-03-18 01:06:55.280 -07 000000437 INF: Z Motor: After move to -0.172396, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:55.280 -07 000000437 INF: Z Motor: Settle wait time = 1421 ms, measure time = 119 ms (allowed 150 ms), total time = 1540 ms
17-03-18 01:06:55.280 -07 000000437 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-18 01:06:55.320 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-18 01:06:55.320 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:06:55.320 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:55.320 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:55.320 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:55.320 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:55.320 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:06:55.320 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:55.320 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:06:55.320 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:06:55.330 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:06:55.330 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:06:55.330 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:06:55.330 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:06:55.340 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:06:55.380 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:06:55.570 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.009895,
17-03-18 01:06:55.680 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:06:55.680 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:06:55.680 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:06:55.680 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 01:06:55.720 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:06:55.720 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 01:06:55.720 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:06:55.800 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:06:55.800 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:55.800 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:06:55.800 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:06:55.820 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:06:55.820 -07 000000462 INF: Autofocus start
17-03-18 01:06:55.820 -07 000000462 INF: MeasureProfile start
17-03-18 01:06:55.820 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:06:55.830 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:06:55.830 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:06:55.840 -07 000000462 INF: MeasureProfile done
17-03-18 01:06:55.840 -07 000000462 INF: X=-176  Z correction [um]=-0.9968696
17-03-18 01:06:55.840 -07 000000462 INF: Autofocus finished
17-03-18 01:06:56.030 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:06:56.030 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 01:06:56.030 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83837890625, Z-position -0.172417288268675. ----------
17-03-18 01:06:56.040 -07 000000610 INF: Cycle	83	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:06:56.040 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35955, sync = True, waitForSettling = True)
17-03-18 01:06:56.040 -07 000000610 INF: Z Motor: Moving to -0.164591 mm, started at -0.172417 mm, distance = 7.83 um
17-03-18 01:06:56.040 -07 000000610 INF: FPGA: Xmit ZDACW 35955\n [Z Motor]
17-03-18 01:06:56.040 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:06:56.050 -07 000000610 INF: FPGA: 'ZDACW 35955' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:06:56.050 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:06:56.050 -07 000000590 INF: FPGA: Recv ZDACR 35955
17-03-18 01:06:56.060 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:56.060 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:06:56.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:56.210 -07 000000579 INF: FPGA: Recv ZSGSRD 34916
17-03-18 01:06:56.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:06:56.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:56.220 -07 000000437 INF: FPGA: Recv ZSGSRD 34915
17-03-18 01:06:56.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:56.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:56.230 -07 000000444 INF: FPGA: Recv ZSGSRD 34906
17-03-18 01:06:56.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:56.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:56.240 -07 000000629 INF: FPGA: Recv ZSGSRD 34913
17-03-18 01:06:56.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:56.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:56.250 -07 000000581 INF: FPGA: Recv ZSGSRD 34914
17-03-18 01:06:56.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:56.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:56.260 -07 000000592 INF: FPGA: Recv ZSGSRD 34916
17-03-18 01:06:56.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:56.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:56.270 -07 000000462 INF: FPGA: Recv ZSGSRD 34908
17-03-18 01:06:56.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:56.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:56.280 -07 000000437 INF: FPGA: Recv ZSGSRD 34908
17-03-18 01:06:56.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:56.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:56.290 -07 000000444 INF: FPGA: Recv ZSGSRD 34915
17-03-18 01:06:56.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:56.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:06:56.300 -07 000000592 INF: FPGA: Recv ZSGSRD 34912
17-03-18 01:06:56.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:56.310 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:06:56.310 -07 000000590 INF: FPGA: Recv ZPIEZORD 30188
17-03-18 01:06:56.320 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:06:56.320 -07 000000610 INF: Z Motor: Piezo is near 44.5 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.486 V. Piezo Error = -10.4 V.
17-03-18 01:06:56.320 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.6 um, Read 10 ADC samples: Avg = 34912 (-163.7 uncal um), Error = 0.8 uncal um, Median = 34914 (-163.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 34906 (-163.7 uncal um), Max = 34916 (-163.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:06:56.320 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34912, posNoise = 4, negNoise = 6
17-03-18 01:06:56.320 -07 000000610 INF: Z Motor: After move to -0.164591, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:06:56.320 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:06:56.320 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:06:56.320 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:06:56.320 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:06:56.320 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:06:56.320 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:06:56.320 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:06:56.320 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:06:56.320 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:06:56.320 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:06:56.320 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:06:56.320 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:06:56.320 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:06:56.320 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:06:56.330 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:06:56.330 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:06:56.330 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:06:56.340 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:06:56.340 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:06:56.340 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:06:56.340 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:06:56.340 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36132 150\n [Camera]
17-03-18 01:06:56.540 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:06:56.930 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:06:56.930 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:06:56.930 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:56.940 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:06:56.940 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:06:56.940 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:56.940 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:56.940 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:06:56.950 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:56.950 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:06:57.130 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36132 775
17-03-18 01:06:57.230 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:06:57.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:06:57.280 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:06:57.340 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:06:57.340 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:06:57.340 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:57.340 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:06:57.340 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:06:57.340 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:57.340 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:57.340 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:06:57.350 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:06:57.350 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:06:57.470 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:06:57.470 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:06:57.470 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:06:57.470 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:06:57.470 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:06:57.470 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:06:57.470 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:06:57.470 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:06:57.470 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:06:57.470 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:06:57.660 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:06:57.660 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:06:57.660 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36132 150' command took 2 ms to send, 1301 ms to get response, and 1312 ms overall
17-03-18 01:06:57.870 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 01:06:57.870 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:06:57.870 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:57.870 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 01:06:57.870 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:06:57.870 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:06:57.880 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:06:57.880 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:06:57.880 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 01:06:57.880 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:06:57.880 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:06:57.920 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 01:06:57.920 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:06:57.970 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 01:06:57.970 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 01:06:57.970 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:06:57.970 -07 000000590 INF: FPGA: Recv EMCUR 
17-03-18 01:06:57.980 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:06:57.980 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 01:06:58.480 -07 000000590 INF: FPGA: Recv EMIN
17-03-18 01:06:58.480 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 01:06:58.480 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 01:06:58.480 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-18 01:06:58.490 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:06:58.490 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:06:58.490 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:06:58.490 -07 000000610 INF: Y Motor: Moving to 59.9126 mm, started at 74.8384 mm, delta = -14.9258 mm
17-03-18 01:06:58.490 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:06:58.490 -07 000000462 INF: FPGA: Recv YRDPOS 153270
17-03-18 01:06:58.500 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:06:58.500 -07 000000610 INF: Y Motor: Encoder = 153270 = motor step 119742.2 = 74.8389 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:06:58.500 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 01:06:58.500 -07 000000610 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:06:58.500 -07 000000610 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:07:00.130 -07 000000581 INF: FPGA: Recv YMVTO 122702 23915
17-03-18 01:07:00.130 -07 000000610 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1627 ms to get response, and 1633 ms overall
17-03-18 01:07:00.130 -07 000000610 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 01:07:00.130 -07 000000610 INF: Y Motor: To move from 74.839 to 59.913 (-14.926 mm) should take 23882 steps, but required 23915 steps (14.947 mm). Slippage = 0.021 mm (0.00%).
17-03-18 01:07:00.130 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1633 ms, distance = 14.926 mm, average velocity = 9.140 mm/sec
17-03-18 01:07:00.930 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.0344,
17-03-18 01:07:02.230 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:07:02.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:07:03.130 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:07:03.130 -07 000000444 INF: FPGA: Recv YRDPOS 122696
17-03-18 01:07:03.140 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:03.140 -07 000000610 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:07:03.170 -07 000000610 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:07:03.170 -07 000000610 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 01:07:03.170 -07 000000610 INF: Y Motor: Moved to 59.9102 after 4679 ms
17-03-18 01:07:03.170 -07 000000610 INF: =================== Cycle #83, Imaging, Performing CoarseFocus. ===================
17-03-18 01:07:03.170 -07 000000610 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:07:03.180 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:07:03.180 -07 000000610 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:07:03.180 -07 000000610 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:07:03.380 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:07:03.380 -07 000000610 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:07:03.380 -07 000000610 INF: Scanning Z-Position: -0.178747
17-03-18 01:07:03.380 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 39047, sync = True, waitForSettling = True)
17-03-18 01:07:03.380 -07 000000610 INF: Z Motor: Moving to -0.178746 mm, started at -0.164605 mm, distance = -14.14 um
17-03-18 01:07:03.380 -07 000000610 INF: FPGA: Xmit ZDACW 39047\n [Z Motor]
17-03-18 01:07:03.380 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:07:03.390 -07 000000610 INF: FPGA: 'ZDACW 39047' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:07:03.390 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:03.390 -07 000000437 INF: FPGA: Recv ZDACR 39047
17-03-18 01:07:03.400 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:03.400 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:03.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:03.550 -07 000000590 INF: FPGA: Recv ZSGSRD 37115
17-03-18 01:07:03.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:03.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:03.560 -07 000000462 INF: FPGA: Recv ZSGSRD 37115
17-03-18 01:07:03.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:03.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:03.570 -07 000000444 INF: FPGA: Recv ZSGSRD 37114
17-03-18 01:07:03.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:03.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:03.580 -07 000000592 INF: FPGA: Recv ZSGSRD 37112
17-03-18 01:07:03.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:03.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:03.590 -07 000000590 INF: FPGA: Recv ZSGSRD 37118
17-03-18 01:07:03.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:03.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:03.600 -07 000000462 INF: FPGA: Recv ZSGSRD 37118
17-03-18 01:07:03.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:03.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:03.610 -07 000000579 INF: FPGA: Recv ZSGSRD 37117
17-03-18 01:07:03.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:03.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:03.620 -07 000000437 INF: FPGA: Recv ZSGSRD 37113
17-03-18 01:07:03.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:03.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:03.630 -07 000000444 INF: FPGA: Recv ZSGSRD 37116
17-03-18 01:07:03.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:03.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:03.640 -07 000000592 INF: FPGA: Recv ZSGSRD 37116
17-03-18 01:07:03.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:03.650 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:03.650 -07 000000590 INF: FPGA: Recv ZPIEZORD 33005
17-03-18 01:07:03.660 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:03.660 -07 000000610 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.958 V. Piezo Error = -9.1 V.
17-03-18 01:07:03.660 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.7 um, Read 10 ADC samples: Avg = 37115 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37116 (-177.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 37112 (-177.8 uncal um), Max = 37118 (-177.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:07:03.660 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37115, posNoise = 3, negNoise = 3
17-03-18 01:07:03.660 -07 000000610 INF: Z Motor: After move to -0.178746, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:03.660 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:07:03.660 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:03.660 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:03.660 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:03.660 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:03.660 -07 000000629 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:03.660 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:03.660 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:03.660 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:07:03.690 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-18 01:07:03.690 -07 000000629 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:03.690 -07 000000629 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:07:03.690 -07 000000629 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:03.700 -07 000000629 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:07:03.700 -07 000000629 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 40 ms.
17-03-18 01:07:03.710 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:03.900 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:04.200 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:04.200 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:04.200 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:04.200 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2147487792, 0x0, 314322768) start.
17-03-18 01:07:04.400 -07 000000462 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:04.400 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:04.400 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 681 ms to get response, and 689 ms overall
17-03-18 01:07:04.750 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2147487792, 0x0, 314322768) end. Duration was 548 ms.
17-03-18 01:07:04.750 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:04.760 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:07:04.760 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 557 ms.
17-03-18 01:07:04.900 -07 000000610 INF: Using center-column region for through-focus analysis: Row=512; Col=2048
17-03-18 01:07:04.900 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:04.910 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:04.920 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=39.98]
17-03-18 01:07:04.920 -07 000000610 INF: Scanning Z-Position: -0.176747
17-03-18 01:07:04.920 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 38610, sync = True, waitForSettling = True)
17-03-18 01:07:04.920 -07 000000610 INF: Z Motor: Moving to -0.176745 mm, started at -0.178758 mm, distance = 2.01 um
17-03-18 01:07:04.920 -07 000000610 INF: FPGA: Xmit ZDACW 38610\n [Z Motor]
17-03-18 01:07:04.920 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:07:04.930 -07 000000610 INF: FPGA: 'ZDACW 38610' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:07:04.930 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:04.930 -07 000000474 INF: FPGA: Recv ZDACR 38610
17-03-18 01:07:04.940 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:04.940 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:05.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:05.090 -07 000000579 INF: FPGA: Recv ZSGSRD 36802
17-03-18 01:07:05.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:05.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:05.100 -07 000000592 INF: FPGA: Recv ZSGSRD 36803
17-03-18 01:07:05.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:05.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:05.110 -07 000000444 INF: FPGA: Recv ZSGSRD 36807
17-03-18 01:07:05.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:05.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:05.120 -07 000000462 INF: FPGA: Recv ZSGSRD 36802
17-03-18 01:07:05.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:05.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:05.130 -07 000000474 INF: FPGA: Recv ZSGSRD 36804
17-03-18 01:07:05.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:05.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:05.140 -07 000000592 INF: FPGA: Recv ZSGSRD 36809
17-03-18 01:07:05.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:05.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:05.150 -07 000000444 INF: FPGA: Recv ZSGSRD 36801
17-03-18 01:07:05.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:05.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:05.160 -07 000000592 INF: FPGA: Recv ZSGSRD 36803
17-03-18 01:07:05.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:05.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:05.170 -07 000000474 INF: FPGA: Recv ZSGSRD 36802
17-03-18 01:07:05.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:05.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:05.180 -07 000000629 INF: FPGA: Recv ZSGSRD 36804
17-03-18 01:07:05.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:05.190 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:05.190 -07 000000437 INF: FPGA: Recv ZPIEZORD 32565
17-03-18 01:07:05.200 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:05.200 -07 000000610 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.892 V. Piezo Error = -9.3 V.
17-03-18 01:07:05.200 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36804 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36803 (-175.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36801 (-175.8 uncal um), Max = 36809 (-175.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:07:05.200 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36804, posNoise = 5, negNoise = 3
17-03-18 01:07:05.200 -07 000000610 INF: Z Motor: After move to -0.176745, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:05.200 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:07:05.200 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:05.200 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:05.200 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:05.200 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:05.200 -07 000000629 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:05.200 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:05.200 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:05.200 -07 000000629 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:05.210 -07 000000629 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:05.210 -07 000000629 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:05.220 -07 000000629 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:07:05.220 -07 000000629 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:07:05.220 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:05.420 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:05.720 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:05.720 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:05.720 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:05.720 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2199090280, 0x0, 314322768) start.
17-03-18 01:07:05.910 -07 000000474 INF: FPGA: Recv @CAMSNAP 686
17-03-18 01:07:05.910 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:05.910 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 691 ms overall
17-03-18 01:07:06.290 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.004458,
17-03-18 01:07:06.300 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2199090280, 0x0, 314322768) end. Duration was 585 ms.
17-03-18 01:07:06.300 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:06.310 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:06.310 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:07:06.410 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:06.420 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:06.430 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=38.23]
17-03-18 01:07:06.430 -07 000000610 INF: Scanning Z-Position: -0.174747
17-03-18 01:07:06.430 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 38173, sync = True, waitForSettling = True)
17-03-18 01:07:06.430 -07 000000610 INF: Z Motor: Moving to -0.174745 mm, started at -0.176760 mm, distance = 2.02 um
17-03-18 01:07:06.430 -07 000000610 INF: FPGA: Xmit ZDACW 38173\n [Z Motor]
17-03-18 01:07:06.430 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 01:07:06.440 -07 000000610 INF: FPGA: 'ZDACW 38173' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:06.440 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:06.440 -07 000000592 INF: FPGA: Recv ZDACR 38173
17-03-18 01:07:06.450 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:06.450 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:06.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:06.600 -07 000000581 INF: FPGA: Recv ZSGSRD 36495
17-03-18 01:07:06.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:06.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:06.610 -07 000000462 INF: FPGA: Recv ZSGSRD 36490
17-03-18 01:07:06.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:06.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:06.620 -07 000000437 INF: FPGA: Recv ZSGSRD 36492
17-03-18 01:07:06.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:06.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:06.630 -07 000000579 INF: FPGA: Recv ZSGSRD 36493
17-03-18 01:07:06.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:06.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:06.640 -07 000000437 INF: FPGA: Recv ZSGSRD 36494
17-03-18 01:07:06.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:06.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:06.650 -07 000000462 INF: FPGA: Recv ZSGSRD 36492
17-03-18 01:07:06.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:06.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:06.660 -07 000000444 INF: FPGA: Recv ZSGSRD 36488
17-03-18 01:07:06.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:06.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:06.670 -07 000000629 INF: FPGA: Recv ZSGSRD 36494
17-03-18 01:07:06.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:06.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:06.680 -07 000000592 INF: FPGA: Recv ZSGSRD 36494
17-03-18 01:07:06.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:06.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:06.690 -07 000000474 INF: FPGA: Recv ZSGSRD 36492
17-03-18 01:07:06.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:06.700 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:06.700 -07 000000437 INF: FPGA: Recv ZPIEZORD 32144
17-03-18 01:07:06.710 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:06.710 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.825 V. Piezo Error = -9.6 V.
17-03-18 01:07:06.710 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36492 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36492 (-173.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36488 (-173.8 uncal um), Max = 36495 (-173.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:07:06.710 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36492, posNoise = 3, negNoise = 4
17-03-18 01:07:06.710 -07 000000610 INF: Z Motor: After move to -0.174745, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:06.710 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:07:06.710 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:06.710 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:06.710 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:06.710 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:06.710 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:06.710 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:06.710 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:06.710 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:06.720 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:06.720 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:06.730 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:07:06.730 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:07:06.730 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:06.930 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:07.230 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:07:07.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:07:07.230 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:07.230 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:07.230 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:07.230 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2281705520, 0x0, 314322768) start.
17-03-18 01:07:07.420 -07 000000629 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:07.420 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:07.420 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall
17-03-18 01:07:07.820 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2281705520, 0x0, 314322768) end. Duration was 586 ms.
17-03-18 01:07:07.820 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:07.820 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:07.820 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:07:07.920 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:07.930 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:07.940 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=37.32]
17-03-18 01:07:07.940 -07 000000610 INF: Scanning Z-Position: -0.172747
17-03-18 01:07:07.940 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37737, sync = True, waitForSettling = True)
17-03-18 01:07:07.940 -07 000000610 INF: Z Motor: Moving to -0.172749 mm, started at -0.174756 mm, distance = 2.01 um
17-03-18 01:07:07.940 -07 000000610 INF: FPGA: Xmit ZDACW 37737\n [Z Motor]
17-03-18 01:07:07.940 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:07:07.950 -07 000000610 INF: FPGA: 'ZDACW 37737' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:07.950 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:07.950 -07 000000437 INF: FPGA: Recv ZDACR 37737
17-03-18 01:07:07.960 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:07.960 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:08.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:08.110 -07 000000474 INF: FPGA: Recv ZSGSRD 36184
17-03-18 01:07:08.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:08.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:08.120 -07 000000437 INF: FPGA: Recv ZSGSRD 36184
17-03-18 01:07:08.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:08.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:08.130 -07 000000474 INF: FPGA: Recv ZSGSRD 36181
17-03-18 01:07:08.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:08.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:08.140 -07 000000579 INF: FPGA: Recv ZSGSRD 36182
17-03-18 01:07:08.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:08.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:08.150 -07 000000592 INF: FPGA: Recv ZSGSRD 36181
17-03-18 01:07:08.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:08.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:08.160 -07 000000474 INF: FPGA: Recv ZSGSRD 36180
17-03-18 01:07:08.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:08.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:08.170 -07 000000581 INF: FPGA: Recv ZSGSRD 36186
17-03-18 01:07:08.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:08.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:08.180 -07 000000462 INF: FPGA: Recv ZSGSRD 36178
17-03-18 01:07:08.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:08.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:08.190 -07 000000444 INF: FPGA: Recv ZSGSRD 36182
17-03-18 01:07:08.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:08.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:08.200 -07 000000629 INF: FPGA: Recv ZSGSRD 36184
17-03-18 01:07:08.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:08.210 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:08.210 -07 000000474 INF: FPGA: Recv ZPIEZORD 31737
17-03-18 01:07:08.220 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:08.220 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.758 V. Piezo Error = -9.8 V.
17-03-18 01:07:08.220 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36182 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36182 (-171.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36178 (-171.9 uncal um), Max = 36186 (-171.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:07:08.220 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36182, posNoise = 4, negNoise = 4
17-03-18 01:07:08.220 -07 000000610 INF: Z Motor: After move to -0.172749, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:08.220 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:08.220 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:08.220 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:08.220 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:08.220 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:08.220 -07 000000444 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:08.220 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:08.220 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:07:08.220 -07 000000444 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:08.220 -07 000000444 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:08.220 -07 000000444 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:08.240 -07 000000444 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:07:08.240 -07 000000444 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:07:08.240 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:08.440 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:08.740 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:08.740 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:08.740 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:08.740 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2333308008, 0x0, 314322768) start.
17-03-18 01:07:08.930 -07 000000579 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:08.930 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:08.930 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall
17-03-18 01:07:09.320 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2333308008, 0x0, 314322768) end. Duration was 586 ms.
17-03-18 01:07:09.320 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:09.330 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:09.330 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:07:09.530 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:09.540 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:09.550 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=37.19]
17-03-18 01:07:09.550 -07 000000610 INF: Scanning Z-Position: -0.170747
17-03-18 01:07:09.550 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37300, sync = True, waitForSettling = True)
17-03-18 01:07:09.550 -07 000000610 INF: Z Motor: Moving to -0.170748 mm, started at -0.172764 mm, distance = 2.02 um
17-03-18 01:07:09.550 -07 000000610 INF: FPGA: Xmit ZDACW 37300\n [Z Motor]
17-03-18 01:07:09.550 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:07:09.560 -07 000000610 INF: FPGA: 'ZDACW 37300' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:07:09.560 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:09.560 -07 000000579 INF: FPGA: Recv ZDACR 37300
17-03-18 01:07:09.570 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:09.570 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:09.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:09.720 -07 000000444 INF: FPGA: Recv ZSGSRD 35868
17-03-18 01:07:09.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:09.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:09.730 -07 000000579 INF: FPGA: Recv ZSGSRD 35873
17-03-18 01:07:09.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:07:09.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:09.740 -07 000000581 INF: FPGA: Recv ZSGSRD 35871
17-03-18 01:07:09.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:09.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:09.750 -07 000000592 INF: FPGA: Recv ZSGSRD 35864
17-03-18 01:07:09.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:09.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:09.760 -07 000000474 INF: FPGA: Recv ZSGSRD 35869
17-03-18 01:07:09.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:09.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:09.770 -07 000000592 INF: FPGA: Recv ZSGSRD 35869
17-03-18 01:07:09.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:09.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:09.780 -07 000000581 INF: FPGA: Recv ZSGSRD 35877
17-03-18 01:07:09.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:09.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:09.790 -07 000000579 INF: FPGA: Recv ZSGSRD 35876
17-03-18 01:07:09.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:09.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:09.800 -07 000000474 INF: FPGA: Recv ZSGSRD 35865
17-03-18 01:07:09.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:09.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:09.810 -07 000000629 INF: FPGA: Recv ZSGSRD 35869
17-03-18 01:07:09.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:09.820 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:09.820 -07 000000474 INF: FPGA: Recv ZPIEZORD 31371
17-03-18 01:07:09.830 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:09.830 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.692 V. Piezo Error = -9.9 V.
17-03-18 01:07:09.830 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35870 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35869 (-169.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35864 (-169.8 uncal um), Max = 35877 (-169.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:07:09.830 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35870, posNoise = 7, negNoise = 6
17-03-18 01:07:09.830 -07 000000610 INF: Z Motor: After move to -0.170748, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:09.830 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:09.830 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:09.830 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:09.830 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:09.830 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:09.830 -07 000000437 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:09.830 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:09.830 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:09.830 -07 000000437 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:09.840 -07 000000437 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:09.840 -07 000000437 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:09.850 -07 000000437 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:07:09.850 -07 000000437 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 18 ms.
17-03-18 01:07:09.850 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:10.050 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:10.350 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:10.350 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:10.350 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:10.350 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2415923248, 0x0, 314322768) start.
17-03-18 01:07:10.540 -07 000000579 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:10.540 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:10.540 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 689 ms overall
17-03-18 01:07:10.940 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2415923248, 0x0, 314322768) end. Duration was 587 ms.
17-03-18 01:07:10.940 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:10.940 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:10.940 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-18 01:07:11.140 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:11.150 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:11.160 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=36.56]
17-03-18 01:07:11.160 -07 000000610 INF: Scanning Z-Position: -0.168747
17-03-18 01:07:11.160 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36863, sync = True, waitForSettling = True)
17-03-18 01:07:11.160 -07 000000610 INF: Z Motor: Moving to -0.168748 mm, started at -0.170760 mm, distance = 2.01 um
17-03-18 01:07:11.160 -07 000000610 INF: FPGA: Xmit ZDACW 36863\n [Z Motor]
17-03-18 01:07:11.160 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:07:11.170 -07 000000610 INF: FPGA: 'ZDACW 36863' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:11.170 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:11.170 -07 000000581 INF: FPGA: Recv ZDACR 36863
17-03-18 01:07:11.180 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:07:11.180 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:11.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:11.330 -07 000000629 INF: FPGA: Recv ZSGSRD 35562
17-03-18 01:07:11.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:11.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:11.340 -07 000000474 INF: FPGA: Recv ZSGSRD 35557
17-03-18 01:07:11.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:11.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:11.360 -07 000000629 INF: FPGA: Recv ZSGSRD 35567
17-03-18 01:07:11.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:07:11.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:11.370 -07 000000474 INF: FPGA: Recv ZSGSRD 35556
17-03-18 01:07:11.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:11.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:11.380 -07 000000579 INF: FPGA: Recv ZSGSRD 35555
17-03-18 01:07:11.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:11.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:11.390 -07 000000474 INF: FPGA: Recv ZSGSRD 35561
17-03-18 01:07:11.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:11.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:11.400 -07 000000444 INF: FPGA: Recv ZSGSRD 35559
17-03-18 01:07:11.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:11.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:11.410 -07 000000462 INF: FPGA: Recv ZSGSRD 35551
17-03-18 01:07:11.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:11.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:11.420 -07 000000629 INF: FPGA: Recv ZSGSRD 35554
17-03-18 01:07:11.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:11.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:11.430 -07 000000474 INF: FPGA: Recv ZSGSRD 35557
17-03-18 01:07:11.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:11.440 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:11.440 -07 000000579 INF: FPGA: Recv ZPIEZORD 30952
17-03-18 01:07:11.450 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:11.450 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.625 V. Piezo Error = -10.1 V.
17-03-18 01:07:11.450 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35558 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35557 (-167.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35551 (-167.8 uncal um), Max = 35567 (-167.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:07:11.450 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35558, posNoise = 9, negNoise = 7
17-03-18 01:07:11.450 -07 000000610 INF: Z Motor: After move to -0.168748, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:11.450 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 01:07:11.450 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:11.450 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:11.450 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:11.450 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:11.450 -07 000000444 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:11.450 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:11.450 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:11.450 -07 000000444 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:11.460 -07 000000444 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:11.460 -07 000000444 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:11.470 -07 000000444 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:07:11.470 -07 000000444 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:07:11.470 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:11.670 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.008536,
17-03-18 01:07:11.670 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:11.970 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:11.970 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:11.970 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:11.970 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2467525736, 0x0, 314322768) start.
17-03-18 01:07:12.160 -07 000000444 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:12.160 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:12.160 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall
17-03-18 01:07:12.230 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:07:12.550 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2467525736, 0x0, 314322768) end. Duration was 587 ms.
17-03-18 01:07:12.550 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:12.560 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:12.560 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:07:12.680 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:07:12.760 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:12.770 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:12.780 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=36.22]
17-03-18 01:07:12.780 -07 000000610 INF: Scanning Z-Position: -0.166747
17-03-18 01:07:12.780 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36426, sync = True, waitForSettling = True)
17-03-18 01:07:12.780 -07 000000610 INF: Z Motor: Moving to -0.166748 mm, started at -0.168755 mm, distance = 2.01 um
17-03-18 01:07:12.780 -07 000000610 INF: FPGA: Xmit ZDACW 36426\n [Z Motor]
17-03-18 01:07:12.780 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:07:12.790 -07 000000610 INF: FPGA: 'ZDACW 36426' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:07:12.790 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:12.790 -07 000000581 INF: FPGA: Recv ZDACR 36426
17-03-18 01:07:12.800 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:12.800 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:12.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:12.950 -07 000000579 INF: FPGA: Recv ZSGSRD 35247
17-03-18 01:07:12.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:12.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:12.960 -07 000000462 INF: FPGA: Recv ZSGSRD 35245
17-03-18 01:07:12.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:12.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:12.970 -07 000000444 INF: FPGA: Recv ZSGSRD 35250
17-03-18 01:07:12.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:12.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:12.980 -07 000000474 INF: FPGA: Recv ZSGSRD 35250
17-03-18 01:07:12.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:12.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:12.990 -07 000000579 INF: FPGA: Recv ZSGSRD 35247
17-03-18 01:07:13.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:13.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:13.000 -07 000000474 INF: FPGA: Recv ZSGSRD 35245
17-03-18 01:07:13.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:13.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:13.010 -07 000000579 INF: FPGA: Recv ZSGSRD 35247
17-03-18 01:07:13.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:13.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:13.020 -07 000000592 INF: FPGA: Recv ZSGSRD 35252
17-03-18 01:07:13.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:13.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:13.030 -07 000000629 INF: FPGA: Recv ZSGSRD 35243
17-03-18 01:07:13.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:13.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:13.040 -07 000000592 INF: FPGA: Recv ZSGSRD 35251
17-03-18 01:07:13.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:13.050 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:13.050 -07 000000474 INF: FPGA: Recv ZPIEZORD 30564
17-03-18 01:07:13.060 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:13.060 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.558 V. Piezo Error = -10.3 V.
17-03-18 01:07:13.060 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35248 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35247 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35243 (-165.9 uncal um), Max = 35252 (-165.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:07:13.060 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35248, posNoise = 4, negNoise = 5
17-03-18 01:07:13.060 -07 000000610 INF: Z Motor: After move to -0.166748, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:13.060 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:07:13.060 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:13.060 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:13.060 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:13.060 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:13.060 -07 000000444 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:13.060 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:13.060 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:13.060 -07 000000444 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:13.070 -07 000000444 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:13.070 -07 000000444 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:13.080 -07 000000444 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:07:13.080 -07 000000444 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-18 01:07:13.080 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:13.280 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:13.580 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:13.580 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:13.580 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:13.580 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2550140976, 0x0, 314322768) start.
17-03-18 01:07:13.770 -07 000000629 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:13.770 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:13.770 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall
17-03-18 01:07:14.160 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2550140976, 0x0, 314322768) end. Duration was 585 ms.
17-03-18 01:07:14.160 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:14.170 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:14.170 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:07:14.370 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:14.380 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:14.390 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=35.44]
17-03-18 01:07:14.390 -07 000000610 INF: Scanning Z-Position: -0.164747
17-03-18 01:07:14.390 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35989, sync = True, waitForSettling = True)
17-03-18 01:07:14.390 -07 000000610 INF: Z Motor: Moving to -0.164747 mm, started at -0.166764 mm, distance = 2.02 um
17-03-18 01:07:14.390 -07 000000610 INF: FPGA: Xmit ZDACW 35989\n [Z Motor]
17-03-18 01:07:14.390 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:07:14.400 -07 000000610 INF: FPGA: 'ZDACW 35989' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:14.400 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:14.400 -07 000000629 INF: FPGA: Recv ZDACR 35989
17-03-18 01:07:14.410 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:14.410 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:14.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:14.560 -07 000000592 INF: FPGA: Recv ZSGSRD 34934
17-03-18 01:07:14.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:14.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:14.570 -07 000000437 INF: FPGA: Recv ZSGSRD 34935
17-03-18 01:07:14.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:14.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:14.580 -07 000000581 INF: FPGA: Recv ZSGSRD 34937
17-03-18 01:07:14.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:14.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:14.590 -07 000000462 INF: FPGA: Recv ZSGSRD 34939
17-03-18 01:07:14.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:14.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:14.600 -07 000000461 INF: FPGA: Recv ZSGSRD 34935
17-03-18 01:07:14.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:14.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:14.610 -07 000000462 INF: FPGA: Recv ZSGSRD 34932
17-03-18 01:07:14.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:14.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:14.620 -07 000000461 INF: FPGA: Recv ZSGSRD 34939
17-03-18 01:07:14.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:14.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:14.630 -07 000000592 INF: FPGA: Recv ZSGSRD 34937
17-03-18 01:07:14.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:14.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:14.640 -07 000000444 INF: FPGA: Recv ZSGSRD 34937
17-03-18 01:07:14.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:14.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:14.650 -07 000000462 INF: FPGA: Recv ZSGSRD 34932
17-03-18 01:07:14.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:14.660 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:14.660 -07 000000581 INF: FPGA: Recv ZPIEZORD 30196
17-03-18 01:07:14.670 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:14.670 -07 000000610 INF: Z Motor: Piezo is near 44.5 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.492 V. Piezo Error = -10.4 V.
17-03-18 01:07:14.670 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.7 um, Read 10 ADC samples: Avg = 34936 (-163.9 uncal um), Error = 0.8 uncal um, Median = 34936 (-163.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 34932 (-163.9 uncal um), Max = 34939 (-163.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:07:14.670 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34936, posNoise = 3, negNoise = 4
17-03-18 01:07:14.670 -07 000000610 INF: Z Motor: After move to -0.164747, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:14.670 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:14.670 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:14.670 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:14.670 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:14.670 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:14.670 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:14.670 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:14.670 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:14.670 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:14.680 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:14.680 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:14.690 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:07:14.690 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-18 01:07:14.690 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:14.890 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:15.190 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:15.190 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:15.190 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:15.190 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2601743464, 0x0, 314322768) start.
17-03-18 01:07:15.380 -07 000000592 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:15.380 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:15.380 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 689 ms overall
17-03-18 01:07:15.780 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2601743464, 0x0, 314322768) end. Duration was 586 ms.
17-03-18 01:07:15.780 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:15.780 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:15.780 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:07:15.980 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:15.990 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:16.000 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=34.35]
17-03-18 01:07:16.000 -07 000000610 INF: Scanning Z-Position: -0.162747
17-03-18 01:07:16.000 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35552, sync = True, waitForSettling = True)
17-03-18 01:07:16.000 -07 000000610 INF: Z Motor: Moving to -0.162747 mm, started at -0.164760 mm, distance = 2.01 um
17-03-18 01:07:16.000 -07 000000610 INF: FPGA: Xmit ZDACW 35552\n [Z Motor]
17-03-18 01:07:16.000 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 01:07:16.010 -07 000000610 INF: FPGA: 'ZDACW 35552' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:16.010 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:16.010 -07 000000629 INF: FPGA: Recv ZDACR 35552
17-03-18 01:07:16.020 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:16.020 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:16.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:16.170 -07 000000444 INF: FPGA: Recv ZSGSRD 34623
17-03-18 01:07:16.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:16.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:16.180 -07 000000581 INF: FPGA: Recv ZSGSRD 34626
17-03-18 01:07:16.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:16.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:16.190 -07 000000474 INF: FPGA: Recv ZSGSRD 34624
17-03-18 01:07:16.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:16.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:16.200 -07 000000437 INF: FPGA: Recv ZSGSRD 34624
17-03-18 01:07:16.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:16.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:16.210 -07 000000629 INF: FPGA: Recv ZSGSRD 34630
17-03-18 01:07:16.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:16.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:16.220 -07 000000592 INF: FPGA: Recv ZSGSRD 34626
17-03-18 01:07:16.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:16.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:16.230 -07 000000444 INF: FPGA: Recv ZSGSRD 34621
17-03-18 01:07:16.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:16.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:16.240 -07 000000474 INF: FPGA: Recv ZSGSRD 34623
17-03-18 01:07:16.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:16.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:16.250 -07 000000437 INF: FPGA: Recv ZSGSRD 34625
17-03-18 01:07:16.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:16.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:16.260 -07 000000444 INF: FPGA: Recv ZSGSRD 34624
17-03-18 01:07:16.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:16.270 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:16.270 -07 000000592 INF: FPGA: Recv ZPIEZORD 29826
17-03-18 01:07:16.280 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:16.280 -07 000000610 INF: Z Motor: Piezo is near 43.7 V (nominally 0 to 100 V), expect near 54.2 V, since DAC is at 5.425 V. Piezo Error = -10.5 V.
17-03-18 01:07:16.280 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -162.7 um, Read 10 ADC samples: Avg = 34625 (-161.9 uncal um), Error = 0.8 uncal um, Median = 34624 (-161.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34621 (-161.9 uncal um), Max = 34630 (-161.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:07:16.280 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34625, posNoise = 5, negNoise = 4
17-03-18 01:07:16.280 -07 000000610 INF: Z Motor: After move to -0.162747, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:16.280 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:07:16.280 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:16.280 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:16.280 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:16.280 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:16.280 -07 000000579 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:16.280 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:16.280 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:16.280 -07 000000579 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:16.290 -07 000000579 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:16.290 -07 000000579 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:16.300 -07 000000579 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:07:16.300 -07 000000579 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-18 01:07:16.300 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:16.500 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:16.800 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:16.800 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:16.800 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:16.800 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2684358704, 0x0, 314322768) start.
17-03-18 01:07:16.990 -07 000000629 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:16.990 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:16.990 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 689 ms overall
17-03-18 01:07:17.030 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.018051,
17-03-18 01:07:17.230 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:07:17.390 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2684358704, 0x0, 314322768) end. Duration was 586 ms.
17-03-18 01:07:17.390 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:17.390 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:17.390 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:07:17.510 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:07:17.590 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:17.600 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:17.610 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=33.99]
17-03-18 01:07:17.610 -07 000000610 INF: Scanning Z-Position: -0.160747
17-03-18 01:07:17.610 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35115, sync = True, waitForSettling = True)
17-03-18 01:07:17.610 -07 000000610 INF: Z Motor: Moving to -0.160746 mm, started at -0.162762 mm, distance = 2.02 um
17-03-18 01:07:17.610 -07 000000610 INF: FPGA: Xmit ZDACW 35115\n [Z Motor]
17-03-18 01:07:17.610 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:07:17.620 -07 000000610 INF: FPGA: 'ZDACW 35115' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:17.620 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:17.620 -07 000000474 INF: FPGA: Recv ZDACR 35115
17-03-18 01:07:17.630 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:17.630 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:17.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:17.780 -07 000000581 INF: FPGA: Recv ZSGSRD 34315
17-03-18 01:07:17.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:17.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:17.790 -07 000000629 INF: FPGA: Recv ZSGSRD 34314
17-03-18 01:07:17.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:17.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:17.800 -07 000000437 INF: FPGA: Recv ZSGSRD 34316
17-03-18 01:07:17.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:17.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:17.810 -07 000000474 INF: FPGA: Recv ZSGSRD 34313
17-03-18 01:07:17.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:17.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:17.820 -07 000000581 INF: FPGA: Recv ZSGSRD 34316
17-03-18 01:07:17.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:17.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:17.830 -07 000000579 INF: FPGA: Recv ZSGSRD 34312
17-03-18 01:07:17.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:17.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:17.840 -07 000000581 INF: FPGA: Recv ZSGSRD 34317
17-03-18 01:07:17.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:17.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:17.850 -07 000000461 INF: FPGA: Recv ZSGSRD 34311
17-03-18 01:07:17.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:17.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:17.860 -07 000000462 INF: FPGA: Recv ZSGSRD 34313
17-03-18 01:07:17.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:17.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:17.870 -07 000000444 INF: FPGA: Recv ZSGSRD 34318
17-03-18 01:07:17.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:17.880 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:17.880 -07 000000629 INF: FPGA: Recv ZPIEZORD 29457
17-03-18 01:07:17.890 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:17.890 -07 000000610 INF: Z Motor: Piezo is near 42.9 V (nominally 0 to 100 V), expect near 53.6 V, since DAC is at 5.358 V. Piezo Error = -10.7 V.
17-03-18 01:07:17.890 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -160.7 um, Read 10 ADC samples: Avg = 34314 (-159.9 uncal um), Error = 0.8 uncal um, Median = 34314 (-159.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 34311 (-159.9 uncal um), Max = 34318 (-159.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:07:17.890 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34314, posNoise = 4, negNoise = 3
17-03-18 01:07:17.890 -07 000000610 INF: Z Motor: After move to -0.160746, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:17.890 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:07:17.890 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:17.890 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:17.890 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:17.890 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:17.890 -07 000000474 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:17.890 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:17.890 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:17.890 -07 000000474 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:17.900 -07 000000474 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:17.900 -07 000000474 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:17.910 -07 000000474 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:07:17.910 -07 000000474 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:07:17.910 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:18.110 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:18.410 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:18.410 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:18.410 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:18.410 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2735961192, 0x0, 314322768) start.
17-03-18 01:07:18.600 -07 000000462 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:18.600 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:18.600 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 689 ms overall
17-03-18 01:07:19.000 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2735961192, 0x0, 314322768) end. Duration was 586 ms.
17-03-18 01:07:19.000 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:19.000 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:19.000 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:07:19.200 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:19.210 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:19.220 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=33.32]
17-03-18 01:07:19.220 -07 000000610 INF: Scanning Z-Position: -0.158747
17-03-18 01:07:19.220 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 34678, sync = True, waitForSettling = True)
17-03-18 01:07:19.220 -07 000000610 INF: Z Motor: Moving to -0.158746 mm, started at -0.160764 mm, distance = 2.02 um
17-03-18 01:07:19.220 -07 000000610 INF: FPGA: Xmit ZDACW 34678\n [Z Motor]
17-03-18 01:07:19.220 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:07:19.230 -07 000000610 INF: FPGA: 'ZDACW 34678' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:07:19.230 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:19.230 -07 000000629 INF: FPGA: Recv ZDACR 34678
17-03-18 01:07:19.240 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:19.240 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:19.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:19.390 -07 000000437 INF: FPGA: Recv ZSGSRD 34005
17-03-18 01:07:19.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:19.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:19.400 -07 000000474 INF: FPGA: Recv ZSGSRD 34002
17-03-18 01:07:19.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:19.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:19.410 -07 000000461 INF: FPGA: Recv ZSGSRD 34005
17-03-18 01:07:19.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:07:19.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:19.420 -07 000000462 INF: FPGA: Recv ZSGSRD 34003
17-03-18 01:07:19.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:19.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:19.430 -07 000000474 INF: FPGA: Recv ZSGSRD 34005
17-03-18 01:07:19.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:19.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:19.440 -07 000000437 INF: FPGA: Recv ZSGSRD 34003
17-03-18 01:07:19.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:19.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:19.450 -07 000000474 INF: FPGA: Recv ZSGSRD 34002
17-03-18 01:07:19.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:19.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:19.460 -07 000000581 INF: FPGA: Recv ZSGSRD 34001
17-03-18 01:07:19.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:19.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:19.470 -07 000000444 INF: FPGA: Recv ZSGSRD 34002
17-03-18 01:07:19.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:19.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:19.480 -07 000000581 INF: FPGA: Recv ZSGSRD 33997
17-03-18 01:07:19.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:19.490 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:19.490 -07 000000462 INF: FPGA: Recv ZPIEZORD 29095
17-03-18 01:07:19.500 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:19.500 -07 000000610 INF: Z Motor: Piezo is near 42.2 V (nominally 0 to 100 V), expect near 52.9 V, since DAC is at 5.292 V. Piezo Error = -10.8 V.
17-03-18 01:07:19.500 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -158.7 um, Read 10 ADC samples: Avg = 34002 (-157.9 uncal um), Error = 0.8 uncal um, Median = 34002 (-157.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 33997 (-157.9 uncal um), Max = 34005 (-157.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:07:19.500 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34002, posNoise = 3, negNoise = 5
17-03-18 01:07:19.500 -07 000000610 INF: Z Motor: After move to -0.158746, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:19.500 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:19.500 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:19.500 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:19.500 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:19.500 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:19.500 -07 000000579 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:19.500 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:19.500 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:19.500 -07 000000579 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:19.510 -07 000000579 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:19.510 -07 000000579 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:19.520 -07 000000579 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:07:19.520 -07 000000579 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:07:19.520 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:19.720 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 193
17-03-18 01:07:20.020 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 493
17-03-18 01:07:20.020 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 493
17-03-18 01:07:20.020 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:20.020 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2818576432, 0x0, 314322768) start.
17-03-18 01:07:20.210 -07 000000444 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:20.210 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:20.210 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 682 ms to get response, and 689 ms overall
17-03-18 01:07:20.600 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2818576432, 0x0, 314322768) end. Duration was 587 ms.
17-03-18 01:07:20.600 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:20.610 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:20.610 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-18 01:07:20.810 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:20.820 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:20.830 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=32.94]
17-03-18 01:07:20.830 -07 000000610 INF: Scanning Z-Position: -0.156747
17-03-18 01:07:20.830 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 34241, sync = True, waitForSettling = True)
17-03-18 01:07:20.830 -07 000000610 INF: Z Motor: Moving to -0.156745 mm, started at -0.158759 mm, distance = 2.01 um
17-03-18 01:07:20.830 -07 000000610 INF: FPGA: Xmit ZDACW 34241\n [Z Motor]
17-03-18 01:07:20.830 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:07:20.840 -07 000000610 INF: FPGA: 'ZDACW 34241' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:20.840 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:20.840 -07 000000629 INF: FPGA: Recv ZDACR 34241
17-03-18 01:07:20.850 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:20.850 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:21.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:21.000 -07 000000579 INF: FPGA: Recv ZSGSRD 33687
17-03-18 01:07:21.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:21.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:21.010 -07 000000625 INF: FPGA: Recv ZSGSRD 33691
17-03-18 01:07:21.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:21.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:21.020 -07 000000444 INF: FPGA: Recv ZSGSRD 33693
17-03-18 01:07:21.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:21.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:21.030 -07 000000625 INF: FPGA: Recv ZSGSRD 33688
17-03-18 01:07:21.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:21.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:21.040 -07 000000629 INF: FPGA: Recv ZSGSRD 33690
17-03-18 01:07:21.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:21.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:21.050 -07 000000444 INF: FPGA: Recv ZSGSRD 33691
17-03-18 01:07:21.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:21.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:21.060 -07 000000579 INF: FPGA: Recv ZSGSRD 33689
17-03-18 01:07:21.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:21.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:21.070 -07 000000444 INF: FPGA: Recv ZSGSRD 33691
17-03-18 01:07:21.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:21.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:21.080 -07 000000579 INF: FPGA: Recv ZSGSRD 33692
17-03-18 01:07:21.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:21.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:21.090 -07 000000625 INF: FPGA: Recv ZSGSRD 33689
17-03-18 01:07:21.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:21.100 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:21.100 -07 000000579 INF: FPGA: Recv ZPIEZORD 28811
17-03-18 01:07:21.110 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:21.110 -07 000000610 INF: Z Motor: Piezo is near 41.5 V (nominally 0 to 100 V), expect near 52.2 V, since DAC is at 5.225 V. Piezo Error = -10.7 V.
17-03-18 01:07:21.110 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -156.7 um, Read 10 ADC samples: Avg = 33690 (-155.9 uncal um), Error = 0.8 uncal um, Median = 33690 (-155.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 33687 (-155.9 uncal um), Max = 33693 (-155.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:07:21.110 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33690, posNoise = 3, negNoise = 3
17-03-18 01:07:21.110 -07 000000610 INF: Z Motor: After move to -0.156745, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:21.110 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:21.110 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:21.110 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:21.110 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:21.110 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:21.110 -07 000000461 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:21.110 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:21.110 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:07:21.110 -07 000000461 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:21.120 -07 000000461 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:21.120 -07 000000461 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:21.130 -07 000000461 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:07:21.130 -07 000000461 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-18 01:07:21.130 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:21.330 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:21.630 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:21.630 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:21.630 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:21.630 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2870178920, 0x0, 314322768) start.
17-03-18 01:07:21.820 -07 000000625 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:21.820 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:21.820 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall
17-03-18 01:07:22.210 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2870178920, 0x0, 314322768) end. Duration was 586 ms.
17-03-18 01:07:22.210 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:22.220 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:22.220 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:07:22.230 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:07:22.300 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:07:22.320 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:22.330 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:22.340 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=33.66]
17-03-18 01:07:22.340 -07 000000610 INF: Scanning Z-Position: -0.154747
17-03-18 01:07:22.340 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 33804, sync = True, waitForSettling = True)
17-03-18 01:07:22.340 -07 000000610 INF: Z Motor: Moving to -0.154745 mm, started at -0.156755 mm, distance = 2.01 um
17-03-18 01:07:22.340 -07 000000610 INF: FPGA: Xmit ZDACW 33804\n [Z Motor]
17-03-18 01:07:22.340 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:07:22.350 -07 000000610 INF: FPGA: 'ZDACW 33804' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:07:22.350 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:22.350 -07 000000462 INF: FPGA: Recv ZDACR 33804
17-03-18 01:07:22.360 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:22.360 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:22.390 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.999021,
17-03-18 01:07:22.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:22.510 -07 000000461 INF: FPGA: Recv ZSGSRD 33385
17-03-18 01:07:22.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:22.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:22.520 -07 000000590 INF: FPGA: Recv ZSGSRD 33377
17-03-18 01:07:22.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:22.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:22.530 -07 000000461 INF: FPGA: Recv ZSGSRD 33378
17-03-18 01:07:22.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:22.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:22.540 -07 000000592 INF: FPGA: Recv ZSGSRD 33378
17-03-18 01:07:22.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:22.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:22.550 -07 000000461 INF: FPGA: Recv ZSGSRD 33380
17-03-18 01:07:22.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:22.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:22.560 -07 000000590 INF: FPGA: Recv ZSGSRD 33384
17-03-18 01:07:22.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:22.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:22.570 -07 000000461 INF: FPGA: Recv ZSGSRD 33365
17-03-18 01:07:22.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:22.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:22.580 -07 000000590 INF: FPGA: Recv ZSGSRD 33376
17-03-18 01:07:22.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:22.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:22.590 -07 000000592 INF: FPGA: Recv ZSGSRD 33384
17-03-18 01:07:22.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:22.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:22.600 -07 000000461 INF: FPGA: Recv ZSGSRD 33376
17-03-18 01:07:22.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:22.610 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:22.610 -07 000000592 INF: FPGA: Recv ZPIEZORD 28490
17-03-18 01:07:22.620 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:22.620 -07 000000610 INF: Z Motor: Piezo is near 40.9 V (nominally 0 to 100 V), expect near 51.6 V, since DAC is at 5.158 V. Piezo Error = -10.7 V.
17-03-18 01:07:22.620 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -154.7 um, Read 10 ADC samples: Avg = 33378 (-153.9 uncal um), Error = 0.8 uncal um, Median = 33378 (-153.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 33365 (-153.8 uncal um), Max = 33385 (-154.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-18 01:07:22.620 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33378, posNoise = 7, negNoise = 13
17-03-18 01:07:22.620 -07 000000610 INF: Z Motor: After move to -0.154745, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:22.620 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:07:22.620 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:22.620 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:22.620 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:22.620 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:22.620 -07 000000461 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:22.620 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:22.620 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:22.620 -07 000000461 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:22.630 -07 000000461 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:22.630 -07 000000461 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:22.640 -07 000000461 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:07:22.640 -07 000000461 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-18 01:07:22.640 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:22.840 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 196
17-03-18 01:07:23.140 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 496
17-03-18 01:07:23.140 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 496
17-03-18 01:07:23.140 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:23.140 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2952794160, 0x0, 314322768) start.
17-03-18 01:07:23.330 -07 000000579 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:23.330 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:23.330 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 682 ms to get response, and 689 ms overall
17-03-18 01:07:23.730 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2952794160, 0x0, 314322768) end. Duration was 591 ms.
17-03-18 01:07:23.730 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:23.740 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:23.740 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 596 ms.
17-03-18 01:07:23.870 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:23.880 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:23.890 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=34.90]
17-03-18 01:07:23.890 -07 000000610 INF: Scanning Z-Position: -0.152747
17-03-18 01:07:23.890 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 33368, sync = True, waitForSettling = True)
17-03-18 01:07:23.890 -07 000000610 INF: Z Motor: Moving to -0.152749 mm, started at -0.154751 mm, distance = 2.00 um
17-03-18 01:07:23.890 -07 000000610 INF: FPGA: Xmit ZDACW 33368\n [Z Motor]
17-03-18 01:07:23.890 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:07:23.900 -07 000000610 INF: FPGA: 'ZDACW 33368' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:23.900 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:23.900 -07 000000592 INF: FPGA: Recv ZDACR 33368
17-03-18 01:07:23.910 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:23.910 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:24.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:24.060 -07 000000581 INF: FPGA: Recv ZSGSRD 33063
17-03-18 01:07:24.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:24.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:24.070 -07 000000487 INF: FPGA: Recv ZSGSRD 33068
17-03-18 01:07:24.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:24.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:24.080 -07 000000579 INF: FPGA: Recv ZSGSRD 33065
17-03-18 01:07:24.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:24.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:24.090 -07 000000592 INF: FPGA: Recv ZSGSRD 33068
17-03-18 01:07:24.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:24.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:24.100 -07 000000590 INF: FPGA: Recv ZSGSRD 33070
17-03-18 01:07:24.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:24.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:24.110 -07 000000474 INF: FPGA: Recv ZSGSRD 33061
17-03-18 01:07:24.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:24.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:24.120 -07 000000579 INF: FPGA: Recv ZSGSRD 33069
17-03-18 01:07:24.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:24.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:24.130 -07 000000474 INF: FPGA: Recv ZSGSRD 33068
17-03-18 01:07:24.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:24.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:24.140 -07 000000625 INF: FPGA: Recv ZSGSRD 33073
17-03-18 01:07:24.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:24.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:24.150 -07 000000592 INF: FPGA: Recv ZSGSRD 33066
17-03-18 01:07:24.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:24.160 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:24.160 -07 000000487 INF: FPGA: Recv ZPIEZORD 28143
17-03-18 01:07:24.170 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:24.170 -07 000000610 INF: Z Motor: Piezo is near 40.1 V (nominally 0 to 100 V), expect near 50.9 V, since DAC is at 5.092 V. Piezo Error = -10.8 V.
17-03-18 01:07:24.170 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -152.7 um, Read 10 ADC samples: Avg = 33067 (-151.9 uncal um), Error = 0.8 uncal um, Median = 33068 (-151.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 33061 (-151.9 uncal um), Max = 33073 (-152.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:07:24.170 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33067, posNoise = 6, negNoise = 6
17-03-18 01:07:24.170 -07 000000610 INF: Z Motor: After move to -0.152749, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:24.170 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:24.170 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:24.170 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:24.170 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:24.170 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:24.170 -07 000000474 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:24.170 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:24.170 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:24.170 -07 000000474 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:24.180 -07 000000474 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:24.180 -07 000000474 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:24.190 -07 000000474 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:07:24.190 -07 000000474 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:07:24.190 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:24.390 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:24.690 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:24.690 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:24.690 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:24.700 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start.
17-03-18 01:07:24.880 -07 000000581 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:24.880 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:24.880 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall
17-03-18 01:07:25.280 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 580 ms.
17-03-18 01:07:25.280 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:25.280 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:25.280 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:07:25.480 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:25.490 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:25.500 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=35.19]
17-03-18 01:07:25.500 -07 000000610 INF: Scanning Z-Position: -0.150747
17-03-18 01:07:25.500 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 32931, sync = True, waitForSettling = True)
17-03-18 01:07:25.500 -07 000000610 INF: Z Motor: Moving to -0.150748 mm, started at -0.152753 mm, distance = 2.00 um
17-03-18 01:07:25.500 -07 000000610 INF: FPGA: Xmit ZDACW 32931\n [Z Motor]
17-03-18 01:07:25.500 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:07:25.510 -07 000000610 INF: FPGA: 'ZDACW 32931' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:25.510 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:25.510 -07 000000625 INF: FPGA: Recv ZDACR 32931
17-03-18 01:07:25.520 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:25.520 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:25.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:25.670 -07 000000592 INF: FPGA: Recv ZSGSRD 32754
17-03-18 01:07:25.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:25.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:25.680 -07 000000579 INF: FPGA: Recv ZSGSRD 32762
17-03-18 01:07:25.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:25.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:25.690 -07 000000581 INF: FPGA: Recv ZSGSRD 32756
17-03-18 01:07:25.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:25.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:25.700 -07 000000579 INF: FPGA: Recv ZSGSRD 32755
17-03-18 01:07:25.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:25.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:25.710 -07 000000592 INF: FPGA: Recv ZSGSRD 32764
17-03-18 01:07:25.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:25.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:25.720 -07 000000474 INF: FPGA: Recv ZSGSRD 32751
17-03-18 01:07:25.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:25.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:25.730 -07 000000487 INF: FPGA: Recv ZSGSRD 32756
17-03-18 01:07:25.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:25.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:25.740 -07 000000579 INF: FPGA: Recv ZSGSRD 32754
17-03-18 01:07:25.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:25.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:25.750 -07 000000487 INF: FPGA: Recv ZSGSRD 32752
17-03-18 01:07:25.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:25.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:25.760 -07 000000462 INF: FPGA: Recv ZSGSRD 32761
17-03-18 01:07:25.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:25.770 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:25.770 -07 000000462 INF: FPGA: Recv ZPIEZORD 27787
17-03-18 01:07:25.780 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:25.780 -07 000000610 INF: Z Motor: Piezo is near 39.4 V (nominally 0 to 100 V), expect near 50.2 V, since DAC is at 5.025 V. Piezo Error = -10.9 V.
17-03-18 01:07:25.780 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -150.7 um, Read 10 ADC samples: Avg = 32756 (-149.9 uncal um), Error = 0.8 uncal um, Median = 32756 (-149.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 32751 (-149.9 uncal um), Max = 32764 (-150.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:07:25.780 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32756, posNoise = 8, negNoise = 5
17-03-18 01:07:25.780 -07 000000610 INF: Z Motor: After move to -0.150748, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:25.780 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:25.780 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:25.780 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:25.780 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:25.780 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:25.780 -07 000000474 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:25.780 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:25.780 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:25.780 -07 000000474 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:25.790 -07 000000474 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:25.790 -07 000000474 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:25.800 -07 000000474 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:07:25.800 -07 000000474 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-18 01:07:25.800 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:26.000 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:26.300 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:26.300 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:26.300 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:26.310 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1131050272, 0x0, 314322768) start.
17-03-18 01:07:26.490 -07 000000487 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:26.490 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:26.490 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 689 ms overall
17-03-18 01:07:26.890 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1131050272, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:07:26.890 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:26.890 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:26.890 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-18 01:07:27.090 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:27.100 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:27.110 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=35.78]
17-03-18 01:07:27.110 -07 000000610 INF: Scanning Z-Position: -0.148747
17-03-18 01:07:27.110 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 32494, sync = True, waitForSettling = True)
17-03-18 01:07:27.110 -07 000000610 INF: Z Motor: Moving to -0.148748 mm, started at -0.150755 mm, distance = 2.01 um
17-03-18 01:07:27.110 -07 000000610 INF: FPGA: Xmit ZDACW 32494\n [Z Motor]
17-03-18 01:07:27.110 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:07:27.120 -07 000000610 INF: FPGA: 'ZDACW 32494' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:27.120 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:27.120 -07 000000487 INF: FPGA: Recv ZDACR 32494
17-03-18 01:07:27.130 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:27.130 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:27.230 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:07:27.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:07:27.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:27.280 -07 000000592 INF: FPGA: Recv ZSGSRD 32448
17-03-18 01:07:27.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:27.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:27.290 -07 000000592 INF: FPGA: Recv ZSGSRD 32445
17-03-18 01:07:27.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:27.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:27.300 -07 000000592 INF: FPGA: Recv ZSGSRD 32445
17-03-18 01:07:27.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:27.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:27.310 -07 000000590 INF: FPGA: Recv ZSGSRD 32447
17-03-18 01:07:27.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:07:27.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:27.320 -07 000000444 INF: FPGA: Recv ZSGSRD 32443
17-03-18 01:07:27.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:27.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:27.330 -07 000000444 INF: FPGA: Recv ZSGSRD 32442
17-03-18 01:07:27.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:27.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:27.340 -07 000000629 INF: FPGA: Recv ZSGSRD 32443
17-03-18 01:07:27.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:27.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:27.350 -07 000000629 INF: FPGA: Recv ZSGSRD 32441
17-03-18 01:07:27.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:27.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:27.360 -07 000000625 INF: FPGA: Recv ZSGSRD 32444
17-03-18 01:07:27.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:27.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:27.370 -07 000000581 INF: FPGA: Recv ZSGSRD 32451
17-03-18 01:07:27.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:27.380 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:27.380 -07 000000625 INF: FPGA: Recv ZPIEZORD 27471
17-03-18 01:07:27.390 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:27.390 -07 000000610 INF: Z Motor: Piezo is near 38.7 V (nominally 0 to 100 V), expect near 49.6 V, since DAC is at 4.958 V. Piezo Error = -10.9 V.
17-03-18 01:07:27.390 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -148.7 um, Read 10 ADC samples: Avg = 32445 (-147.9 uncal um), Error = 0.8 uncal um, Median = 32444 (-147.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 32441 (-147.9 uncal um), Max = 32451 (-148.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:07:27.390 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32445, posNoise = 6, negNoise = 4
17-03-18 01:07:27.390 -07 000000610 INF: Z Motor: After move to -0.148748, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:27.390 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:27.390 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:27.390 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:27.390 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:27.390 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:27.390 -07 000000579 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:27.390 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:27.390 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:07:27.390 -07 000000579 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:27.400 -07 000000579 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:27.400 -07 000000579 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:27.400 -07 000000579 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:07:27.400 -07 000000579 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-18 01:07:27.410 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:27.600 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:27.750 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.955391,
17-03-18 01:07:27.900 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:27.900 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:27.910 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:27.910 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:07:28.100 -07 000000444 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:28.100 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:28.100 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 681 ms to get response, and 689 ms overall
17-03-18 01:07:28.500 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 582 ms.
17-03-18 01:07:28.500 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:28.500 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:28.500 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-18 01:07:28.710 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:28.720 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:28.730 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=36.98]
17-03-18 01:07:28.730 -07 000000610 INF: Scanning Z-Position: -0.146747
17-03-18 01:07:28.730 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 32057, sync = True, waitForSettling = True)
17-03-18 01:07:28.730 -07 000000610 INF: Z Motor: Moving to -0.146748 mm, started at -0.148757 mm, distance = 2.01 um
17-03-18 01:07:28.730 -07 000000610 INF: FPGA: Xmit ZDACW 32057\n [Z Motor]
17-03-18 01:07:28.730 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:07:28.740 -07 000000610 INF: FPGA: 'ZDACW 32057' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:07:28.740 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:28.740 -07 000000590 INF: FPGA: Recv ZDACR 32057
17-03-18 01:07:28.750 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:28.750 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:28.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:28.900 -07 000000579 INF: FPGA: Recv ZSGSRD 32136
17-03-18 01:07:28.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:28.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:28.910 -07 000000590 INF: FPGA: Recv ZSGSRD 32140
17-03-18 01:07:28.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:28.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:28.920 -07 000000579 INF: FPGA: Recv ZSGSRD 32127
17-03-18 01:07:28.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:28.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:28.930 -07 000000590 INF: FPGA: Recv ZSGSRD 32134
17-03-18 01:07:28.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:28.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:28.940 -07 000000579 INF: FPGA: Recv ZSGSRD 32126
17-03-18 01:07:28.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:28.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:28.950 -07 000000579 INF: FPGA: Recv ZSGSRD 32132
17-03-18 01:07:28.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:28.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:28.960 -07 000000590 INF: FPGA: Recv ZSGSRD 32137
17-03-18 01:07:28.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:28.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:28.970 -07 000000579 INF: FPGA: Recv ZSGSRD 32131
17-03-18 01:07:28.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:28.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:28.980 -07 000000590 INF: FPGA: Recv ZSGSRD 32137
17-03-18 01:07:28.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:28.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:28.990 -07 000000579 INF: FPGA: Recv ZSGSRD 32134
17-03-18 01:07:29.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:29.000 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:29.000 -07 000000579 INF: FPGA: Recv ZPIEZORD 27166
17-03-18 01:07:29.010 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:29.010 -07 000000610 INF: Z Motor: Piezo is near 38.0 V (nominally 0 to 100 V), expect near 48.9 V, since DAC is at 4.892 V. Piezo Error = -10.9 V.
17-03-18 01:07:29.010 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -146.7 um, Read 10 ADC samples: Avg = 32133 (-145.9 uncal um), Error = 0.8 uncal um, Median = 32134 (-145.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 32126 (-145.9 uncal um), Max = 32140 (-146.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:07:29.010 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32133, posNoise = 7, negNoise = 7
17-03-18 01:07:29.010 -07 000000610 INF: Z Motor: After move to -0.146748, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:29.010 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:29.010 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:29.010 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:29.010 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:29.010 -07 000000444 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:29.010 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:29.010 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:29.010 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:29.010 -07 000000444 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:29.020 -07 000000444 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:29.020 -07 000000444 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:29.030 -07 000000444 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:07:29.030 -07 000000444 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:07:29.030 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:29.230 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:29.530 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:29.530 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:29.530 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:29.530 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start.
17-03-18 01:07:29.720 -07 000000629 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:29.720 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:29.720 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall
17-03-18 01:07:30.120 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 583 ms.
17-03-18 01:07:30.120 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:30.120 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:30.120 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-18 01:07:30.220 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:30.230 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:30.240 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=36.93]
17-03-18 01:07:30.240 -07 000000610 INF: Scanning Z-Position: -0.144747
17-03-18 01:07:30.240 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 31620, sync = True, waitForSettling = True)
17-03-18 01:07:30.240 -07 000000610 INF: Z Motor: Moving to -0.144747 mm, started at -0.146753 mm, distance = 2.01 um
17-03-18 01:07:30.240 -07 000000610 INF: FPGA: Xmit ZDACW 31620\n [Z Motor]
17-03-18 01:07:30.240 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:07:30.250 -07 000000610 INF: FPGA: 'ZDACW 31620' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:07:30.250 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:30.250 -07 000000629 INF: FPGA: Recv ZDACR 31620
17-03-18 01:07:30.260 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:30.260 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:30.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:30.410 -07 000000444 INF: FPGA: Recv ZSGSRD 31822
17-03-18 01:07:30.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:30.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:30.420 -07 000000629 INF: FPGA: Recv ZSGSRD 31826
17-03-18 01:07:30.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:30.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:30.430 -07 000000444 INF: FPGA: Recv ZSGSRD 31822
17-03-18 01:07:30.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:30.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:30.440 -07 000000581 INF: FPGA: Recv ZSGSRD 31822
17-03-18 01:07:30.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:30.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:30.450 -07 000000625 INF: FPGA: Recv ZSGSRD 31821
17-03-18 01:07:30.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:30.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:30.460 -07 000000462 INF: FPGA: Recv ZSGSRD 31824
17-03-18 01:07:30.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:30.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:30.470 -07 000000444 INF: FPGA: Recv ZSGSRD 31824
17-03-18 01:07:30.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:30.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:30.480 -07 000000625 INF: FPGA: Recv ZSGSRD 31821
17-03-18 01:07:30.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:30.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:30.490 -07 000000444 INF: FPGA: Recv ZSGSRD 31822
17-03-18 01:07:30.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:30.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:30.500 -07 000000625 INF: FPGA: Recv ZSGSRD 31823
17-03-18 01:07:30.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:30.510 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:30.510 -07 000000592 INF: FPGA: Recv ZPIEZORD 26842
17-03-18 01:07:30.520 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:30.520 -07 000000610 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 48.2 V, since DAC is at 4.825 V. Piezo Error = -10.9 V.
17-03-18 01:07:30.520 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -144.7 um, Read 10 ADC samples: Avg = 31823 (-143.9 uncal um), Error = 0.8 uncal um, Median = 31822 (-143.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 31821 (-143.9 uncal um), Max = 31826 (-144.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:07:30.520 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31823, posNoise = 3, negNoise = 2
17-03-18 01:07:30.520 -07 000000610 INF: Z Motor: After move to -0.144747, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:30.520 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:30.520 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:30.520 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:30.520 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:30.520 -07 000000579 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:30.520 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:30.520 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:30.520 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:30.520 -07 000000579 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:30.530 -07 000000579 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:30.530 -07 000000579 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:30.540 -07 000000579 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:07:30.540 -07 000000579 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:07:30.550 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:30.740 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:31.040 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:31.040 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:31.040 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:31.050 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1131050272, 0x0, 314322768) start.
17-03-18 01:07:31.230 -07 000000581 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:31.230 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:31.240 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 679 ms to get response, and 695 ms overall
17-03-18 01:07:31.630 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1131050272, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:07:31.630 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:31.630 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:31.630 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:07:31.740 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:31.750 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:31.760 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=39.36]
17-03-18 01:07:31.760 -07 000000610 INF: Scanning Z-Position: -0.142747
17-03-18 01:07:31.760 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 31183, sync = True, waitForSettling = True)
17-03-18 01:07:31.760 -07 000000610 INF: Z Motor: Moving to -0.142747 mm, started at -0.144761 mm, distance = 2.01 um
17-03-18 01:07:31.760 -07 000000610 INF: FPGA: Xmit ZDACW 31183\n [Z Motor]
17-03-18 01:07:31.760 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:07:31.770 -07 000000610 INF: FPGA: 'ZDACW 31183' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:31.770 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:31.770 -07 000000579 INF: FPGA: Recv ZDACR 31183
17-03-18 01:07:31.780 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:31.780 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:31.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:31.930 -07 000000625 INF: FPGA: Recv ZSGSRD 31511
17-03-18 01:07:31.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:31.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:31.940 -07 000000444 INF: FPGA: Recv ZSGSRD 31507
17-03-18 01:07:31.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:31.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:31.950 -07 000000625 INF: FPGA: Recv ZSGSRD 31510
17-03-18 01:07:31.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:31.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:31.960 -07 000000444 INF: FPGA: Recv ZSGSRD 31508
17-03-18 01:07:31.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:31.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:31.970 -07 000000462 INF: FPGA: Recv ZSGSRD 31512
17-03-18 01:07:31.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:31.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:31.980 -07 000000581 INF: FPGA: Recv ZSGSRD 31515
17-03-18 01:07:31.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:07:31.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:31.990 -07 000000625 INF: FPGA: Recv ZSGSRD 31506
17-03-18 01:07:32.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:32.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:32.000 -07 000000592 INF: FPGA: Recv ZSGSRD 31508
17-03-18 01:07:32.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:32.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:32.010 -07 000000625 INF: FPGA: Recv ZSGSRD 31507
17-03-18 01:07:32.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:32.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:32.020 -07 000000444 INF: FPGA: Recv ZSGSRD 31516
17-03-18 01:07:32.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:32.030 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:32.030 -07 000000625 INF: FPGA: Recv ZPIEZORD 26527
17-03-18 01:07:32.040 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:32.040 -07 000000610 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 47.6 V, since DAC is at 4.758 V. Piezo Error = -10.9 V.
17-03-18 01:07:32.040 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -142.7 um, Read 10 ADC samples: Avg = 31510 (-141.9 uncal um), Error = 0.8 uncal um, Median = 31509 (-141.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31506 (-141.9 uncal um), Max = 31516 (-142.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:07:32.040 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31510, posNoise = 6, negNoise = 4
17-03-18 01:07:32.040 -07 000000610 INF: Z Motor: After move to -0.142747, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:32.040 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:07:32.040 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:32.040 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:32.040 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:32.040 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:32.040 -07 000000462 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:32.040 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:32.040 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:32.040 -07 000000462 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:32.050 -07 000000462 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:07:32.050 -07 000000462 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:32.060 -07 000000462 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 01:07:32.060 -07 000000462 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 18 ms.
17-03-18 01:07:32.060 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:32.230 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:07:32.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:07:32.260 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:32.560 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:32.560 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:32.560 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:32.560 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:07:32.750 -07 000000625 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:32.750 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:32.750 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 689 ms overall
17-03-18 01:07:33.110 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.958108,
17-03-18 01:07:33.150 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:07:33.150 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:33.150 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:33.150 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:07:33.350 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:33.360 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:33.370 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=41.02]
17-03-18 01:07:33.370 -07 000000610 INF: Scanning Z-Position: -0.140747
17-03-18 01:07:33.370 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 30746, sync = True, waitForSettling = True)
17-03-18 01:07:33.370 -07 000000610 INF: Z Motor: Moving to -0.140746 mm, started at -0.142750 mm, distance = 2.00 um
17-03-18 01:07:33.370 -07 000000610 INF: FPGA: Xmit ZDACW 30746\n [Z Motor]
17-03-18 01:07:33.370 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:07:33.380 -07 000000610 INF: FPGA: 'ZDACW 30746' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:07:33.380 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:33.380 -07 000000592 INF: FPGA: Recv ZDACR 30746
17-03-18 01:07:33.390 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:33.390 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:33.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:33.540 -07 000000581 INF: FPGA: Recv ZSGSRD 31196
17-03-18 01:07:33.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:33.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:33.550 -07 000000629 INF: FPGA: Recv ZSGSRD 31200
17-03-18 01:07:33.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:33.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:33.560 -07 000000444 INF: FPGA: Recv ZSGSRD 31195
17-03-18 01:07:33.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:33.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:33.570 -07 000000581 INF: FPGA: Recv ZSGSRD 31200
17-03-18 01:07:33.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:33.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:33.580 -07 000000444 INF: FPGA: Recv ZSGSRD 31196
17-03-18 01:07:33.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:33.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:33.590 -07 000000581 INF: FPGA: Recv ZSGSRD 31198
17-03-18 01:07:33.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:33.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:33.600 -07 000000625 INF: FPGA: Recv ZSGSRD 31200
17-03-18 01:07:33.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:33.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:33.610 -07 000000581 INF: FPGA: Recv ZSGSRD 31194
17-03-18 01:07:33.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:33.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:33.620 -07 000000625 INF: FPGA: Recv ZSGSRD 31198
17-03-18 01:07:33.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:33.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:33.630 -07 000000462 INF: FPGA: Recv ZSGSRD 31198
17-03-18 01:07:33.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:33.640 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:33.640 -07 000000625 INF: FPGA: Recv ZPIEZORD 26213
17-03-18 01:07:33.650 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:33.650 -07 000000610 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 46.9 V, since DAC is at 4.692 V. Piezo Error = -10.9 V.
17-03-18 01:07:33.650 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.7 um, Read 10 ADC samples: Avg = 31198 (-139.9 uncal um), Error = 0.8 uncal um, Median = 31198 (-139.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 31194 (-139.9 uncal um), Max = 31200 (-140.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:07:33.650 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31198, posNoise = 2, negNoise = 4
17-03-18 01:07:33.650 -07 000000610 INF: Z Motor: After move to -0.140746, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:33.650 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:07:33.650 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:33.650 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:33.650 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:33.650 -07 000000444 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:33.650 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:33.650 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:33.650 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:33.650 -07 000000444 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:33.660 -07 000000444 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:33.660 -07 000000444 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:33.670 -07 000000444 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:07:33.670 -07 000000444 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:07:33.670 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:33.870 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:34.160 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:34.160 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:34.170 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:34.180 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1442870632, 0x0, 314322768) start.
17-03-18 01:07:34.360 -07 000000579 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:34.360 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:34.360 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 682 ms to get response, and 689 ms overall
17-03-18 01:07:34.760 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1442870632, 0x0, 314322768) end. Duration was 582 ms.
17-03-18 01:07:34.760 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:34.760 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:34.760 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 598 ms.
17-03-18 01:07:34.970 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:34.980 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:34.990 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=47.12]
17-03-18 01:07:34.990 -07 000000610 INF: Scanning Z-Position: -0.138747
17-03-18 01:07:34.990 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 30309, sync = True, waitForSettling = True)
17-03-18 01:07:34.990 -07 000000610 INF: Z Motor: Moving to -0.138746 mm, started at -0.140746 mm, distance = 2.00 um
17-03-18 01:07:34.990 -07 000000610 INF: FPGA: Xmit ZDACW 30309\n [Z Motor]
17-03-18 01:07:35.000 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:07:35.000 -07 000000610 INF: FPGA: 'ZDACW 30309' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:07:35.000 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:35.000 -07 000000629 INF: FPGA: Recv ZDACR 30309
17-03-18 01:07:35.010 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:35.010 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:35.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:35.160 -07 000000444 INF: FPGA: Recv ZSGSRD 30890
17-03-18 01:07:35.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:35.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:35.170 -07 000000629 INF: FPGA: Recv ZSGSRD 30895
17-03-18 01:07:35.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:35.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:35.180 -07 000000444 INF: FPGA: Recv ZSGSRD 30884
17-03-18 01:07:35.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:35.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:35.190 -07 000000581 INF: FPGA: Recv ZSGSRD 30890
17-03-18 01:07:35.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:35.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:35.200 -07 000000625 INF: FPGA: Recv ZSGSRD 30892
17-03-18 01:07:35.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:35.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:35.210 -07 000000461 INF: FPGA: Recv ZSGSRD 30882
17-03-18 01:07:35.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:35.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:35.220 -07 000000625 INF: FPGA: Recv ZSGSRD 30890
17-03-18 01:07:35.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:35.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:35.230 -07 000000462 INF: FPGA: Recv ZSGSRD 30890
17-03-18 01:07:35.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:35.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:35.240 -07 000000625 INF: FPGA: Recv ZSGSRD 30891
17-03-18 01:07:35.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:35.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:35.250 -07 000000625 INF: FPGA: Recv ZSGSRD 30891
17-03-18 01:07:35.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:35.260 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:35.260 -07 000000579 INF: FPGA: Recv ZPIEZORD 25909
17-03-18 01:07:35.270 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:35.270 -07 000000610 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.625 V. Piezo Error = -10.9 V.
17-03-18 01:07:35.270 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30890 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30890 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30882 (-137.9 uncal um), Max = 30895 (-138.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:07:35.270 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30890, posNoise = 5, negNoise = 8
17-03-18 01:07:35.270 -07 000000610 INF: Z Motor: After move to -0.138746, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:35.270 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 01:07:35.270 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:35.270 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:35.270 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:35.270 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:35.270 -07 000000461 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:35.270 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:35.270 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:07:35.270 -07 000000461 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:35.280 -07 000000461 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:35.280 -07 000000461 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:35.290 -07 000000461 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:07:35.290 -07 000000461 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-18 01:07:35.290 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:35.490 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:35.790 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:35.790 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:35.790 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:35.790 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:07:35.980 -07 000000487 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:35.980 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:35.980 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall
17-03-18 01:07:36.370 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:07:36.370 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:36.380 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:36.380 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:07:36.480 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:36.490 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:36.500 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=55.18]
17-03-18 01:07:36.500 -07 000000610 INF: Scanning Z-Position: -0.136747
17-03-18 01:07:36.500 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29872, sync = True, waitForSettling = True)
17-03-18 01:07:36.500 -07 000000610 INF: Z Motor: Moving to -0.136745 mm, started at -0.138767 mm, distance = 2.02 um
17-03-18 01:07:36.500 -07 000000610 INF: FPGA: Xmit ZDACW 29872\n [Z Motor]
17-03-18 01:07:36.500 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:07:36.510 -07 000000610 INF: FPGA: 'ZDACW 29872' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:36.510 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:36.510 -07 000000487 INF: FPGA: Recv ZDACR 29872
17-03-18 01:07:36.520 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:36.520 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:36.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:36.670 -07 000000625 INF: FPGA: Recv ZSGSRD 30575
17-03-18 01:07:36.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:36.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:36.680 -07 000000462 INF: FPGA: Recv ZSGSRD 30577
17-03-18 01:07:36.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:36.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:36.690 -07 000000629 INF: FPGA: Recv ZSGSRD 30579
17-03-18 01:07:36.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:36.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:36.700 -07 000000462 INF: FPGA: Recv ZSGSRD 30577
17-03-18 01:07:36.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:36.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:36.710 -07 000000487 INF: FPGA: Recv ZSGSRD 30575
17-03-18 01:07:36.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:36.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:36.720 -07 000000444 INF: FPGA: Recv ZSGSRD 30572
17-03-18 01:07:36.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:36.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:36.730 -07 000000437 INF: FPGA: Recv ZSGSRD 30580
17-03-18 01:07:36.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:36.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:36.740 -07 000000625 INF: FPGA: Recv ZSGSRD 30573
17-03-18 01:07:36.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:36.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:36.750 -07 000000444 INF: FPGA: Recv ZSGSRD 30575
17-03-18 01:07:36.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:36.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:36.760 -07 000000579 INF: FPGA: Recv ZSGSRD 30576
17-03-18 01:07:36.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:36.770 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:36.770 -07 000000444 INF: FPGA: Recv ZPIEZORD 25598
17-03-18 01:07:36.780 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:36.780 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.558 V. Piezo Error = -10.9 V.
17-03-18 01:07:36.780 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30576 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30576 (-136.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30572 (-135.9 uncal um), Max = 30580 (-136.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:07:36.780 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30576, posNoise = 4, negNoise = 4
17-03-18 01:07:36.780 -07 000000610 INF: Z Motor: After move to -0.136745, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:36.780 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:36.780 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:36.780 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:36.780 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:36.780 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:36.780 -07 000000579 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:36.780 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:36.780 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:36.780 -07 000000579 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:36.790 -07 000000579 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:36.790 -07 000000579 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:36.800 -07 000000579 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:07:36.800 -07 000000579 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-18 01:07:36.800 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:37.000 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:37.230 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:07:37.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:07:37.300 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:37.300 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:37.300 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:37.300 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1442870632, 0x0, 314322768) start.
17-03-18 01:07:37.490 -07 000000487 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:37.490 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:37.490 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 689 ms overall
17-03-18 01:07:37.890 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1442870632, 0x0, 314322768) end. Duration was 580 ms.
17-03-18 01:07:37.890 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:37.890 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:37.890 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:07:38.090 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:38.100 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:38.110 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=75.40]
17-03-18 01:07:38.110 -07 000000610 INF: Scanning Z-Position: -0.134747
17-03-18 01:07:38.110 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29435, sync = True, waitForSettling = True)
17-03-18 01:07:38.110 -07 000000610 INF: Z Motor: Moving to -0.134745 mm, started at -0.136750 mm, distance = 2.01 um
17-03-18 01:07:38.110 -07 000000610 INF: FPGA: Xmit ZDACW 29435\n [Z Motor]
17-03-18 01:07:38.110 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:07:38.120 -07 000000610 INF: FPGA: 'ZDACW 29435' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:38.120 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:38.120 -07 000000487 INF: FPGA: Recv ZDACR 29435
17-03-18 01:07:38.130 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:38.130 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:38.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:38.280 -07 000000625 INF: FPGA: Recv ZSGSRD 30267
17-03-18 01:07:38.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:38.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:38.290 -07 000000437 INF: FPGA: Recv ZSGSRD 30260
17-03-18 01:07:38.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:38.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:38.300 -07 000000625 INF: FPGA: Recv ZSGSRD 30262
17-03-18 01:07:38.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:38.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:38.310 -07 000000444 INF: FPGA: Recv ZSGSRD 30265
17-03-18 01:07:38.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:38.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:38.320 -07 000000625 INF: FPGA: Recv ZSGSRD 30257
17-03-18 01:07:38.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:38.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:38.330 -07 000000444 INF: FPGA: Recv ZSGSRD 30259
17-03-18 01:07:38.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:38.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:38.340 -07 000000625 INF: FPGA: Recv ZSGSRD 30269
17-03-18 01:07:38.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:38.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:38.350 -07 000000444 INF: FPGA: Recv ZSGSRD 30262
17-03-18 01:07:38.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:38.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:38.360 -07 000000579 INF: FPGA: Recv ZSGSRD 30268
17-03-18 01:07:38.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:38.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:38.370 -07 000000625 INF: FPGA: Recv ZSGSRD 30257
17-03-18 01:07:38.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:38.380 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:38.380 -07 000000629 INF: FPGA: Recv ZPIEZORD 25296
17-03-18 01:07:38.390 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:38.390 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.491 V. Piezo Error = -10.9 V.
17-03-18 01:07:38.390 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30263 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30262 (-133.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30257 (-133.9 uncal um), Max = 30269 (-134.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:07:38.390 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30263, posNoise = 6, negNoise = 6
17-03-18 01:07:38.390 -07 000000610 INF: Z Motor: After move to -0.134745, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:38.390 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:38.390 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:38.390 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:38.390 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:38.390 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:38.390 -07 000000462 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:38.390 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:38.390 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:07:38.390 -07 000000462 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:38.400 -07 000000462 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:38.400 -07 000000462 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:38.410 -07 000000462 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:07:38.410 -07 000000462 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-18 01:07:38.410 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:38.470 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.960826,
17-03-18 01:07:38.610 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:38.910 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:38.910 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:38.910 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:38.910 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start.
17-03-18 01:07:39.100 -07 000000487 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:39.100 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:39.100 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 689 ms overall
17-03-18 01:07:39.500 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 585 ms.
17-03-18 01:07:39.500 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:39.500 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:39.500 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:07:39.700 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:39.710 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:39.720 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=140.40]
17-03-18 01:07:39.720 -07 000000610 INF: Scanning Z-Position: -0.132747
17-03-18 01:07:39.720 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28999, sync = True, waitForSettling = True)
17-03-18 01:07:39.720 -07 000000610 INF: Z Motor: Moving to -0.132749 mm, started at -0.134739 mm, distance = 1.99 um
17-03-18 01:07:39.720 -07 000000610 INF: FPGA: Xmit ZDACW 28999\n [Z Motor]
17-03-18 01:07:39.720 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:07:39.730 -07 000000610 INF: FPGA: 'ZDACW 28999' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:39.730 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:39.730 -07 000000462 INF: FPGA: Recv ZDACR 28999
17-03-18 01:07:39.740 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:39.740 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:39.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:39.890 -07 000000579 INF: FPGA: Recv ZSGSRD 29955
17-03-18 01:07:39.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:39.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:39.900 -07 000000625 INF: FPGA: Recv ZSGSRD 29948
17-03-18 01:07:39.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:39.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:39.910 -07 000000462 INF: FPGA: Recv ZSGSRD 29952
17-03-18 01:07:39.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:39.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:39.920 -07 000000625 INF: FPGA: Recv ZSGSRD 29952
17-03-18 01:07:39.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:39.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:39.930 -07 000000487 INF: FPGA: Recv ZSGSRD 29955
17-03-18 01:07:39.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:39.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:39.940 -07 000000444 INF: FPGA: Recv ZSGSRD 29950
17-03-18 01:07:39.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:39.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:39.950 -07 000000437 INF: FPGA: Recv ZSGSRD 29955
17-03-18 01:07:39.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:39.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:39.960 -07 000000444 INF: FPGA: Recv ZSGSRD 29954
17-03-18 01:07:39.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:39.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:39.970 -07 000000487 INF: FPGA: Recv ZSGSRD 29956
17-03-18 01:07:39.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:39.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:39.980 -07 000000444 INF: FPGA: Recv ZSGSRD 29951
17-03-18 01:07:39.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:39.990 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:39.990 -07 000000629 INF: FPGA: Recv ZPIEZORD 25003
17-03-18 01:07:40.000 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:40.000 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.425 V. Piezo Error = -10.8 V.
17-03-18 01:07:40.000 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29953 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29953 (-132.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29948 (-131.9 uncal um), Max = 29956 (-132.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:07:40.000 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29953, posNoise = 3, negNoise = 5
17-03-18 01:07:40.000 -07 000000610 INF: Z Motor: After move to -0.132749, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:40.000 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:40.000 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:40.000 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:40.000 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:40.000 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:40.000 -07 000000462 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:40.000 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:40.000 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:07:40.000 -07 000000462 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:40.010 -07 000000462 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:40.010 -07 000000462 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:40.020 -07 000000462 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:07:40.020 -07 000000462 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:07:40.020 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:40.220 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:40.520 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:40.520 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:40.520 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:40.520 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) start.
17-03-18 01:07:40.710 -07 000000462 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:40.710 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:40.710 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall
17-03-18 01:07:41.100 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) end. Duration was 586 ms.
17-03-18 01:07:41.100 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:41.110 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:41.110 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:07:41.320 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:41.330 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:41.340 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=172.96]
17-03-18 01:07:41.340 -07 000000610 INF: Scanning Z-Position: -0.130747
17-03-18 01:07:41.340 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28562, sync = True, waitForSettling = True)
17-03-18 01:07:41.340 -07 000000610 INF: Z Motor: Moving to -0.130748 mm, started at -0.132748 mm, distance = 2.00 um
17-03-18 01:07:41.350 -07 000000610 INF: FPGA: Xmit ZDACW 28562\n [Z Motor]
17-03-18 01:07:41.350 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:07:41.360 -07 000000610 INF: FPGA: 'ZDACW 28562' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:07:41.360 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:41.360 -07 000000437 INF: FPGA: Recv ZDACR 28562
17-03-18 01:07:41.370 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:41.370 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:41.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:41.520 -07 000000625 INF: FPGA: Recv ZSGSRD 29644
17-03-18 01:07:41.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:41.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:41.530 -07 000000462 INF: FPGA: Recv ZSGSRD 29644
17-03-18 01:07:41.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:41.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:41.540 -07 000000625 INF: FPGA: Recv ZSGSRD 29639
17-03-18 01:07:41.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:41.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:41.550 -07 000000462 INF: FPGA: Recv ZSGSRD 29646
17-03-18 01:07:41.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:41.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:41.560 -07 000000625 INF: FPGA: Recv ZSGSRD 29643
17-03-18 01:07:41.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:41.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:41.570 -07 000000437 INF: FPGA: Recv ZSGSRD 29640
17-03-18 01:07:41.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:41.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:41.580 -07 000000625 INF: FPGA: Recv ZSGSRD 29644
17-03-18 01:07:41.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:41.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:41.590 -07 000000437 INF: FPGA: Recv ZSGSRD 29640
17-03-18 01:07:41.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:41.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:41.600 -07 000000625 INF: FPGA: Recv ZSGSRD 29642
17-03-18 01:07:41.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:41.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:41.610 -07 000000629 INF: FPGA: Recv ZSGSRD 29641
17-03-18 01:07:41.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:41.620 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:41.620 -07 000000625 INF: FPGA: Recv ZPIEZORD 24642
17-03-18 01:07:41.630 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:41.630 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -10.9 V.
17-03-18 01:07:41.630 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29642 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29642 (-130.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29639 (-130.0 uncal um), Max = 29646 (-130.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:07:41.630 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29642, posNoise = 4, negNoise = 3
17-03-18 01:07:41.630 -07 000000610 INF: Z Motor: After move to -0.130748, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:41.630 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-18 01:07:41.630 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:41.630 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:41.630 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:41.630 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:41.630 -07 000000437 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:41.630 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:41.630 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:41.630 -07 000000437 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:41.640 -07 000000437 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:41.640 -07 000000437 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:41.640 -07 000000437 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 6 ms.
17-03-18 01:07:41.640 -07 000000437 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 10 ms.
17-03-18 01:07:41.650 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:41.840 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:42.140 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:42.140 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:42.140 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:42.150 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:07:42.230 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:07:42.340 -07 000000625 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:42.340 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:42.340 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 681 ms to get response, and 689 ms overall
17-03-18 01:07:42.730 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 580 ms.
17-03-18 01:07:42.730 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:42.740 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:42.740 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:07:42.820 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:07:42.840 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:42.850 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:42.860 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=89.57]
17-03-18 01:07:42.860 -07 000000610 INF: Scanning Z-Position: -0.128747
17-03-18 01:07:42.860 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28125, sync = True, waitForSettling = True)
17-03-18 01:07:42.860 -07 000000610 INF: Z Motor: Moving to -0.128748 mm, started at -0.130750 mm, distance = 2.00 um
17-03-18 01:07:42.860 -07 000000610 INF: FPGA: Xmit ZDACW 28125\n [Z Motor]
17-03-18 01:07:42.860 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:07:42.870 -07 000000610 INF: FPGA: 'ZDACW 28125' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:07:42.870 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:42.870 -07 000000437 INF: FPGA: Recv ZDACR 28125
17-03-18 01:07:42.880 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:42.880 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:43.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:43.030 -07 000000625 INF: FPGA: Recv ZSGSRD 29333
17-03-18 01:07:43.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:43.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:43.040 -07 000000462 INF: FPGA: Recv ZSGSRD 29332
17-03-18 01:07:43.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:43.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:43.050 -07 000000579 INF: FPGA: Recv ZSGSRD 29323
17-03-18 01:07:43.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:43.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:43.060 -07 000000590 INF: FPGA: Recv ZSGSRD 29333
17-03-18 01:07:43.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:43.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:43.070 -07 000000462 INF: FPGA: Recv ZSGSRD 29333
17-03-18 01:07:43.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:43.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:43.080 -07 000000625 INF: FPGA: Recv ZSGSRD 29333
17-03-18 01:07:43.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:43.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:43.090 -07 000000629 INF: FPGA: Recv ZSGSRD 29328
17-03-18 01:07:43.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:43.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:43.100 -07 000000625 INF: FPGA: Recv ZSGSRD 29330
17-03-18 01:07:43.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:43.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:43.110 -07 000000579 INF: FPGA: Recv ZSGSRD 29336
17-03-18 01:07:43.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:43.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:43.120 -07 000000625 INF: FPGA: Recv ZSGSRD 29330
17-03-18 01:07:43.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:43.130 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:43.130 -07 000000462 INF: FPGA: Recv ZPIEZORD 24356
17-03-18 01:07:43.140 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:43.140 -07 000000610 INF: Z Motor: Piezo is near 32.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.292 V. Piezo Error = -10.9 V.
17-03-18 01:07:43.140 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29331 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29332 (-128.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29323 (-127.9 uncal um), Max = 29336 (-128.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:07:43.140 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29331, posNoise = 5, negNoise = 8
17-03-18 01:07:43.140 -07 000000610 INF: Z Motor: After move to -0.128748, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:43.140 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:07:43.140 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:43.140 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:43.140 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:43.140 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:43.140 -07 000000487 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:43.140 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:43.140 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:43.140 -07 000000487 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:43.150 -07 000000487 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:43.150 -07 000000487 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:43.160 -07 000000487 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:07:43.160 -07 000000487 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-18 01:07:43.160 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:43.360 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:43.660 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:43.660 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:43.660 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:43.660 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1442346272, 0x0, 314322768) start.
17-03-18 01:07:43.830 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.02213,
17-03-18 01:07:43.850 -07 000000437 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:43.850 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:43.850 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 682 ms to get response, and 689 ms overall
17-03-18 01:07:44.240 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1442346272, 0x0, 314322768) end. Duration was 580 ms.
17-03-18 01:07:44.240 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:44.250 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:44.250 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-18 01:07:44.350 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:44.360 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:44.370 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=56.56]
17-03-18 01:07:44.370 -07 000000610 INF: Scanning Z-Position: -0.126747
17-03-18 01:07:44.370 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27688, sync = True, waitForSettling = True)
17-03-18 01:07:44.370 -07 000000610 INF: Z Motor: Moving to -0.126748 mm, started at -0.128752 mm, distance = 2.00 um
17-03-18 01:07:44.370 -07 000000610 INF: FPGA: Xmit ZDACW 27688\n [Z Motor]
17-03-18 01:07:44.370 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 01:07:44.380 -07 000000610 INF: FPGA: 'ZDACW 27688' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:44.380 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:44.380 -07 000000629 INF: FPGA: Recv ZDACR 27688
17-03-18 01:07:44.390 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:44.390 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:44.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:44.540 -07 000000462 INF: FPGA: Recv ZSGSRD 29019
17-03-18 01:07:44.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:44.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:44.550 -07 000000625 INF: FPGA: Recv ZSGSRD 29015
17-03-18 01:07:44.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:44.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:44.560 -07 000000579 INF: FPGA: Recv ZSGSRD 29023
17-03-18 01:07:44.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:44.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:44.570 -07 000000625 INF: FPGA: Recv ZSGSRD 29018
17-03-18 01:07:44.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:44.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:44.580 -07 000000462 INF: FPGA: Recv ZSGSRD 29024
17-03-18 01:07:44.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:44.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:44.590 -07 000000590 INF: FPGA: Recv ZSGSRD 29013
17-03-18 01:07:44.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:44.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:44.600 -07 000000437 INF: FPGA: Recv ZSGSRD 29015
17-03-18 01:07:44.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:44.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:44.610 -07 000000625 INF: FPGA: Recv ZSGSRD 29023
17-03-18 01:07:44.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:44.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:44.620 -07 000000437 INF: FPGA: Recv ZSGSRD 29019
17-03-18 01:07:44.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:44.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:44.630 -07 000000625 INF: FPGA: Recv ZSGSRD 29022
17-03-18 01:07:44.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:44.640 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:44.640 -07 000000579 INF: FPGA: Recv ZPIEZORD 24101
17-03-18 01:07:44.650 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:44.650 -07 000000610 INF: Z Motor: Piezo is near 31.5 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.225 V. Piezo Error = -10.8 V.
17-03-18 01:07:44.650 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.7 um, Read 10 ADC samples: Avg = 29019 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29019 (-126.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29013 (-125.9 uncal um), Max = 29024 (-126.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:07:44.650 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29019, posNoise = 5, negNoise = 6
17-03-18 01:07:44.650 -07 000000610 INF: Z Motor: After move to -0.126748, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:44.650 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:44.650 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:44.650 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:44.650 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:44.650 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:44.650 -07 000000629 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:44.650 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:44.650 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:44.650 -07 000000629 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:44.660 -07 000000629 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:44.660 -07 000000629 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:44.670 -07 000000629 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:07:44.670 -07 000000629 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-18 01:07:44.670 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:44.870 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:45.170 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:45.170 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:45.170 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:45.170 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start.
17-03-18 01:07:45.360 -07 000000437 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:45.360 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:45.360 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 689 ms overall
17-03-18 01:07:45.750 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 582 ms.
17-03-18 01:07:45.750 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:45.760 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:45.760 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 587 ms.
17-03-18 01:07:45.860 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:45.870 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:45.880 -07 000000610 INF: Image SNR check: pass  [peak (Max-Min)=45.62]
17-03-18 01:07:45.880 -07 000000610 INF: Scanning Z-Position: -0.124747
17-03-18 01:07:45.880 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27251, sync = True, waitForSettling = True)
17-03-18 01:07:45.880 -07 000000610 INF: Z Motor: Moving to -0.124747 mm, started at -0.126748 mm, distance = 2.00 um
17-03-18 01:07:45.880 -07 000000610 INF: FPGA: Xmit ZDACW 27251\n [Z Motor]
17-03-18 01:07:45.880 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:07:45.890 -07 000000610 INF: FPGA: 'ZDACW 27251' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:45.890 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:45.890 -07 000000462 INF: FPGA: Recv ZDACR 27251
17-03-18 01:07:45.900 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:45.900 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:46.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:46.050 -07 000000437 INF: FPGA: Recv ZSGSRD 28707
17-03-18 01:07:46.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:46.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:46.060 -07 000000590 INF: FPGA: Recv ZSGSRD 28707
17-03-18 01:07:46.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:46.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:46.070 -07 000000462 INF: FPGA: Recv ZSGSRD 28708
17-03-18 01:07:46.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:07:46.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:46.080 -07 000000437 INF: FPGA: Recv ZSGSRD 28714
17-03-18 01:07:46.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:46.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:46.090 -07 000000629 INF: FPGA: Recv ZSGSRD 28705
17-03-18 01:07:46.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:46.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:46.100 -07 000000462 INF: FPGA: Recv ZSGSRD 28708
17-03-18 01:07:46.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:46.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:46.110 -07 000000579 INF: FPGA: Recv ZSGSRD 28708
17-03-18 01:07:46.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:46.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:46.120 -07 000000462 INF: FPGA: Recv ZSGSRD 28704
17-03-18 01:07:46.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:46.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:46.130 -07 000000625 INF: FPGA: Recv ZSGSRD 28707
17-03-18 01:07:46.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:46.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:46.140 -07 000000590 INF: FPGA: Recv ZSGSRD 28704
17-03-18 01:07:46.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:46.150 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:46.150 -07 000000437 INF: FPGA: Recv ZPIEZORD 23816
17-03-18 01:07:46.160 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:46.160 -07 000000610 INF: Z Motor: Piezo is near 30.9 V (nominally 0 to 100 V), expect near 41.6 V, since DAC is at 4.158 V. Piezo Error = -10.7 V.
17-03-18 01:07:46.160 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -124.7 um, Read 10 ADC samples: Avg = 28707 (-124.0 uncal um), Error = 0.8 uncal um, Median = 28707 (-124.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28704 (-124.0 uncal um), Max = 28714 (-124.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:07:46.160 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28707, posNoise = 7, negNoise = 3
17-03-18 01:07:46.160 -07 000000610 INF: Z Motor: After move to -0.124747, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:46.160 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:07:46.160 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:46.160 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:46.160 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:46.160 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:46.160 -07 000000487 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:46.160 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:46.160 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:46.160 -07 000000487 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:46.170 -07 000000487 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:46.170 -07 000000487 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:46.170 -07 000000487 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:07:46.170 -07 000000487 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-18 01:07:46.180 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:46.380 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:46.670 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:46.670 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:46.680 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:46.680 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) start.
17-03-18 01:07:46.870 -07 000000487 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:46.870 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:46.870 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 682 ms to get response, and 689 ms overall
17-03-18 01:07:47.230 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:07:47.260 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) end. Duration was 586 ms.
17-03-18 01:07:47.260 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:47.270 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:47.270 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:07:47.420 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:07:47.580 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:47.590 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:47.600 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=39.54]
17-03-18 01:07:47.600 -07 000000610 INF: Scanning Z-Position: -0.122747
17-03-18 01:07:47.600 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 26814, sync = True, waitForSettling = True)
17-03-18 01:07:47.600 -07 000000610 INF: Z Motor: Moving to -0.122747 mm, started at -0.124743 mm, distance = 2.00 um
17-03-18 01:07:47.600 -07 000000610 INF: FPGA: Xmit ZDACW 26814\n [Z Motor]
17-03-18 01:07:47.600 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:07:47.610 -07 000000610 INF: FPGA: 'ZDACW 26814' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:47.610 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:47.610 -07 000000629 INF: FPGA: Recv ZDACR 26814
17-03-18 01:07:47.620 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:47.620 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:47.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:47.770 -07 000000625 INF: FPGA: Recv ZSGSRD 28403
17-03-18 01:07:47.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:47.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:47.780 -07 000000487 INF: FPGA: Recv ZSGSRD 28396
17-03-18 01:07:47.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:47.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:47.790 -07 000000625 INF: FPGA: Recv ZSGSRD 28391
17-03-18 01:07:47.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:47.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:47.800 -07 000000462 INF: FPGA: Recv ZSGSRD 28397
17-03-18 01:07:47.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:47.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:47.810 -07 000000629 INF: FPGA: Recv ZSGSRD 28399
17-03-18 01:07:47.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:47.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:47.820 -07 000000462 INF: FPGA: Recv ZSGSRD 28404
17-03-18 01:07:47.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:47.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:47.830 -07 000000625 INF: FPGA: Recv ZSGSRD 28392
17-03-18 01:07:47.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:47.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:47.840 -07 000000579 INF: FPGA: Recv ZSGSRD 28398
17-03-18 01:07:47.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:47.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:47.850 -07 000000625 INF: FPGA: Recv ZSGSRD 28406
17-03-18 01:07:47.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:47.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:47.860 -07 000000462 INF: FPGA: Recv ZSGSRD 28390
17-03-18 01:07:47.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:47.870 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:47.870 -07 000000625 INF: FPGA: Recv ZPIEZORD 23576
17-03-18 01:07:47.880 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:47.880 -07 000000610 INF: Z Motor: Piezo is near 30.4 V (nominally 0 to 100 V), expect near 40.9 V, since DAC is at 4.092 V. Piezo Error = -10.6 V.
17-03-18 01:07:47.880 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -122.7 um, Read 10 ADC samples: Avg = 28398 (-122.0 uncal um), Error = 0.7 uncal um, Median = 28398 (-122.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 28390 (-121.9 uncal um), Max = 28406 (-122.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:07:47.880 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28398, posNoise = 8, negNoise = 8
17-03-18 01:07:47.880 -07 000000610 INF: Z Motor: After move to -0.122747, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:47.880 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:47.880 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:47.880 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:47.880 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:47.880 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:47.880 -07 000000625 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:47.880 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:47.880 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:47.880 -07 000000625 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:47.890 -07 000000625 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:47.890 -07 000000625 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:47.900 -07 000000625 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:07:47.900 -07 000000625 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:07:47.900 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:48.100 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:48.400 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:48.400 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:48.400 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:48.400 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:07:48.590 -07 000000629 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:48.590 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:48.590 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall
17-03-18 01:07:48.990 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 582 ms.
17-03-18 01:07:48.990 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:48.990 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:48.990 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-18 01:07:49.090 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:49.100 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:49.110 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=36.90]
17-03-18 01:07:49.110 -07 000000610 INF: Scanning Z-Position: -0.120747
17-03-18 01:07:49.110 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 26377, sync = True, waitForSettling = True)
17-03-18 01:07:49.110 -07 000000610 INF: Z Motor: Moving to -0.120746 mm, started at -0.122758 mm, distance = 2.01 um
17-03-18 01:07:49.110 -07 000000610 INF: FPGA: Xmit ZDACW 26377\n [Z Motor]
17-03-18 01:07:49.110 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 01:07:49.120 -07 000000610 INF: FPGA: 'ZDACW 26377' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:49.120 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:49.120 -07 000000462 INF: FPGA: Recv ZDACR 26377
17-03-18 01:07:49.130 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:49.130 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:49.190 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.011254,
17-03-18 01:07:49.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:49.280 -07 000000625 INF: FPGA: Recv ZSGSRD 28080
17-03-18 01:07:49.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:49.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:49.290 -07 000000487 INF: FPGA: Recv ZSGSRD 28091
17-03-18 01:07:49.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:49.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:49.300 -07 000000625 INF: FPGA: Recv ZSGSRD 28084
17-03-18 01:07:49.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:49.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:49.310 -07 000000437 INF: FPGA: Recv ZSGSRD 28087
17-03-18 01:07:49.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:49.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:49.320 -07 000000625 INF: FPGA: Recv ZSGSRD 28083
17-03-18 01:07:49.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:49.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:49.330 -07 000000487 INF: FPGA: Recv ZSGSRD 28078
17-03-18 01:07:49.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:49.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:49.340 -07 000000625 INF: FPGA: Recv ZSGSRD 28090
17-03-18 01:07:49.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:49.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:49.350 -07 000000487 INF: FPGA: Recv ZSGSRD 28086
17-03-18 01:07:49.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:49.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:49.360 -07 000000625 INF: FPGA: Recv ZSGSRD 28086
17-03-18 01:07:49.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:49.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:49.370 -07 000000487 INF: FPGA: Recv ZSGSRD 28089
17-03-18 01:07:49.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:49.380 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:49.380 -07 000000437 INF: FPGA: Recv ZPIEZORD 23316
17-03-18 01:07:49.390 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:49.390 -07 000000610 INF: Z Motor: Piezo is near 29.8 V (nominally 0 to 100 V), expect near 40.2 V, since DAC is at 4.025 V. Piezo Error = -10.4 V.
17-03-18 01:07:49.390 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -120.7 um, Read 10 ADC samples: Avg = 28085 (-120.0 uncal um), Error = 0.8 uncal um, Median = 28086 (-120.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 28078 (-119.9 uncal um), Max = 28091 (-120.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:07:49.390 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28085, posNoise = 6, negNoise = 7
17-03-18 01:07:49.390 -07 000000610 INF: Z Motor: After move to -0.120746, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:49.390 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:07:49.390 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:49.390 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:49.390 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:49.390 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:49.390 -07 000000462 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:49.390 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:49.390 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:49.390 -07 000000462 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:49.400 -07 000000462 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:49.400 -07 000000462 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:49.410 -07 000000462 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:07:49.410 -07 000000462 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-18 01:07:49.410 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:49.610 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:49.910 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:49.910 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:49.910 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:49.910 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1442346272, 0x0, 314322768) start.
17-03-18 01:07:50.100 -07 000000629 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:50.100 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:50.100 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall
17-03-18 01:07:50.500 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1442346272, 0x0, 314322768) end. Duration was 582 ms.
17-03-18 01:07:50.500 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:50.500 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:50.500 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-18 01:07:50.600 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:50.610 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:50.620 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=34.25]
17-03-18 01:07:50.620 -07 000000610 INF: Scanning Z-Position: -0.118747
17-03-18 01:07:50.620 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 25940, sync = True, waitForSettling = True)
17-03-18 01:07:50.620 -07 000000610 INF: Z Motor: Moving to -0.118746 mm, started at -0.120747 mm, distance = 2.00 um
17-03-18 01:07:50.620 -07 000000610 INF: FPGA: Xmit ZDACW 25940\n [Z Motor]
17-03-18 01:07:50.620 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:07:50.630 -07 000000610 INF: FPGA: 'ZDACW 25940' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:50.630 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:50.630 -07 000000625 INF: FPGA: Recv ZDACR 25940
17-03-18 01:07:50.640 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:50.640 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:50.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:50.790 -07 000000487 INF: FPGA: Recv ZSGSRD 27778
17-03-18 01:07:50.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:50.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:50.800 -07 000000579 INF: FPGA: Recv ZSGSRD 27777
17-03-18 01:07:50.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:50.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:50.810 -07 000000487 INF: FPGA: Recv ZSGSRD 27771
17-03-18 01:07:50.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:50.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:50.820 -07 000000625 INF: FPGA: Recv ZSGSRD 27778
17-03-18 01:07:50.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:50.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:50.830 -07 000000487 INF: FPGA: Recv ZSGSRD 27776
17-03-18 01:07:50.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:50.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:50.840 -07 000000437 INF: FPGA: Recv ZSGSRD 27784
17-03-18 01:07:50.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:50.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:50.850 -07 000000462 INF: FPGA: Recv ZSGSRD 27768
17-03-18 01:07:50.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:50.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:50.860 -07 000000625 INF: FPGA: Recv ZSGSRD 27770
17-03-18 01:07:50.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:50.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:50.870 -07 000000487 INF: FPGA: Recv ZSGSRD 27779
17-03-18 01:07:50.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:50.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:50.880 -07 000000625 INF: FPGA: Recv ZSGSRD 27773
17-03-18 01:07:50.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:50.890 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:50.890 -07 000000625 INF: FPGA: Recv ZPIEZORD 23022
17-03-18 01:07:50.900 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:50.900 -07 000000610 INF: Z Motor: Piezo is near 29.2 V (nominally 0 to 100 V), expect near 39.6 V, since DAC is at 3.958 V. Piezo Error = -10.4 V.
17-03-18 01:07:50.900 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -118.7 um, Read 10 ADC samples: Avg = 27775 (-118.0 uncal um), Error = 0.7 uncal um, Median = 27776 (-118.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 27768 (-118.0 uncal um), Max = 27784 (-118.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:07:50.900 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 27775, posNoise = 9, negNoise = 7
17-03-18 01:07:50.900 -07 000000610 INF: Z Motor: After move to -0.118746, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:50.900 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:50.900 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:50.900 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:50.900 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:50.900 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:50.900 -07 000000487 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:50.900 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:50.900 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:50.900 -07 000000487 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:50.910 -07 000000487 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:50.910 -07 000000487 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:50.920 -07 000000487 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:07:50.920 -07 000000487 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:07:50.920 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:51.120 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:51.420 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:51.420 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:51.420 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:51.420 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start.
17-03-18 01:07:51.610 -07 000000592 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:51.610 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:51.610 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall
17-03-18 01:07:52.010 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 587 ms.
17-03-18 01:07:52.010 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:52.010 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:52.010 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:07:52.110 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:52.120 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:52.130 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=33.32]
17-03-18 01:07:52.130 -07 000000610 INF: Scanning Z-Position: -0.116747
17-03-18 01:07:52.130 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 25503, sync = True, waitForSettling = True)
17-03-18 01:07:52.130 -07 000000610 INF: Z Motor: Moving to -0.116745 mm, started at -0.118756 mm, distance = 2.01 um
17-03-18 01:07:52.130 -07 000000610 INF: FPGA: Xmit ZDACW 25503\n [Z Motor]
17-03-18 01:07:52.130 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:07:52.140 -07 000000610 INF: FPGA: 'ZDACW 25503' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:52.140 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:52.140 -07 000000625 INF: FPGA: Recv ZDACR 25503
17-03-18 01:07:52.150 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:52.150 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:52.230 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:07:52.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:07:52.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:52.300 -07 000000581 INF: FPGA: Recv ZSGSRD 27462
17-03-18 01:07:52.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:52.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:52.310 -07 000000581 INF: FPGA: Recv ZSGSRD 27466
17-03-18 01:07:52.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:52.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:52.320 -07 000000581 INF: FPGA: Recv ZSGSRD 27460
17-03-18 01:07:52.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:52.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:52.330 -07 000000581 INF: FPGA: Recv ZSGSRD 27466
17-03-18 01:07:52.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:52.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:52.340 -07 000000592 INF: FPGA: Recv ZSGSRD 27464
17-03-18 01:07:52.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:52.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:52.350 -07 000000461 INF: FPGA: Recv ZSGSRD 27456
17-03-18 01:07:52.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:52.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:52.360 -07 000000592 INF: FPGA: Recv ZSGSRD 27461
17-03-18 01:07:52.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:52.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:52.370 -07 000000625 INF: FPGA: Recv ZSGSRD 27463
17-03-18 01:07:52.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:52.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:52.380 -07 000000629 INF: FPGA: Recv ZSGSRD 27458
17-03-18 01:07:52.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:52.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:52.390 -07 000000461 INF: FPGA: Recv ZSGSRD 27464
17-03-18 01:07:52.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:52.400 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:52.400 -07 000000462 INF: FPGA: Recv ZPIEZORD 22753
17-03-18 01:07:52.410 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:52.410 -07 000000610 INF: Z Motor: Piezo is near 28.6 V (nominally 0 to 100 V), expect near 38.9 V, since DAC is at 3.892 V. Piezo Error = -10.3 V.
17-03-18 01:07:52.410 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -116.7 um, Read 10 ADC samples: Avg = 27462 (-116.0 uncal um), Error = 0.7 uncal um, Median = 27462 (-116.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 27456 (-116.0 uncal um), Max = 27466 (-116.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:07:52.410 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 27462, posNoise = 4, negNoise = 6
17-03-18 01:07:52.410 -07 000000610 INF: Z Motor: After move to -0.116745, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:52.410 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:52.410 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:52.410 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:52.410 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:52.410 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:52.410 -07 000000462 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:52.410 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:52.410 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:52.410 -07 000000462 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:52.420 -07 000000462 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:52.420 -07 000000462 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:52.430 -07 000000462 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:07:52.430 -07 000000462 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:07:52.430 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:52.630 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:52.930 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:52.930 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:52.930 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:52.930 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) start.
17-03-18 01:07:53.120 -07 000000461 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:53.120 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:53.120 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 682 ms to get response, and 689 ms overall
17-03-18 01:07:53.510 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) end. Duration was 586 ms.
17-03-18 01:07:53.510 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:53.520 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:53.520 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:07:53.830 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:53.840 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:53.850 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=32.04]
17-03-18 01:07:53.850 -07 000000610 INF: Scanning Z-Position: -0.114747
17-03-18 01:07:53.850 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 25066, sync = True, waitForSettling = True)
17-03-18 01:07:53.850 -07 000000610 INF: Z Motor: Moving to -0.114745 mm, started at -0.116745 mm, distance = 2.00 um
17-03-18 01:07:53.850 -07 000000610 INF: FPGA: Xmit ZDACW 25066\n [Z Motor]
17-03-18 01:07:53.850 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:07:53.860 -07 000000610 INF: FPGA: 'ZDACW 25066' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:07:53.860 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:53.860 -07 000000462 INF: FPGA: Recv ZDACR 25066
17-03-18 01:07:53.870 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:53.870 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:54.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:54.020 -07 000000461 INF: FPGA: Recv ZSGSRD 27152
17-03-18 01:07:54.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:54.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:54.030 -07 000000629 INF: FPGA: Recv ZSGSRD 27151
17-03-18 01:07:54.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:54.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:54.040 -07 000000625 INF: FPGA: Recv ZSGSRD 27152
17-03-18 01:07:54.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:54.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:54.050 -07 000000462 INF: FPGA: Recv ZSGSRD 27149
17-03-18 01:07:54.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:54.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:54.060 -07 000000461 INF: FPGA: Recv ZSGSRD 27155
17-03-18 01:07:54.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:54.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:54.070 -07 000000462 INF: FPGA: Recv ZSGSRD 27151
17-03-18 01:07:54.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:54.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:54.080 -07 000000625 INF: FPGA: Recv ZSGSRD 27149
17-03-18 01:07:54.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:54.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:54.090 -07 000000592 INF: FPGA: Recv ZSGSRD 27159
17-03-18 01:07:54.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:54.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:54.100 -07 000000461 INF: FPGA: Recv ZSGSRD 27150
17-03-18 01:07:54.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:54.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:54.110 -07 000000629 INF: FPGA: Recv ZSGSRD 27154
17-03-18 01:07:54.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:54.120 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:54.120 -07 000000625 INF: FPGA: Recv ZPIEZORD 22506
17-03-18 01:07:54.130 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:54.130 -07 000000610 INF: Z Motor: Piezo is near 28.1 V (nominally 0 to 100 V), expect near 38.2 V, since DAC is at 3.825 V. Piezo Error = -10.2 V.
17-03-18 01:07:54.130 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -114.7 um, Read 10 ADC samples: Avg = 27152 (-114.0 uncal um), Error = 0.7 uncal um, Median = 27152 (-114.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 27149 (-114.0 uncal um), Max = 27159 (-114.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:07:54.130 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 27152, posNoise = 7, negNoise = 3
17-03-18 01:07:54.130 -07 000000610 INF: Z Motor: After move to -0.114745, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:54.130 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:54.130 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:54.130 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:54.130 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:54.130 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:54.130 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:54.130 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:54.130 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:54.130 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:54.140 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:54.140 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:54.150 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:07:54.150 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:07:54.150 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:54.350 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 193
17-03-18 01:07:54.550 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.999021,
17-03-18 01:07:54.650 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 493
17-03-18 01:07:54.650 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 493
17-03-18 01:07:54.650 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:54.660 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:07:54.840 -07 000000581 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:54.840 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:54.840 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall
17-03-18 01:07:55.240 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:07:55.260 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:55.270 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:55.270 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 618 ms.
17-03-18 01:07:55.540 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:55.550 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:55.560 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=31.08]
17-03-18 01:07:55.560 -07 000000610 INF: Scanning Z-Position: -0.112747
17-03-18 01:07:55.560 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 24630, sync = True, waitForSettling = True)
17-03-18 01:07:55.560 -07 000000610 INF: Z Motor: Moving to -0.112749 mm, started at -0.114754 mm, distance = 2.00 um
17-03-18 01:07:55.560 -07 000000610 INF: FPGA: Xmit ZDACW 24630\n [Z Motor]
17-03-18 01:07:55.560 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:07:55.570 -07 000000610 INF: FPGA: 'ZDACW 24630' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:55.570 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:55.570 -07 000000462 INF: FPGA: Recv ZDACR 24630
17-03-18 01:07:55.580 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:55.580 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:55.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:55.730 -07 000000629 INF: FPGA: Recv ZSGSRD 26846
17-03-18 01:07:55.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:55.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:55.740 -07 000000461 INF: FPGA: Recv ZSGSRD 26846
17-03-18 01:07:55.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:55.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:55.750 -07 000000625 INF: FPGA: Recv ZSGSRD 26839
17-03-18 01:07:55.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:55.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:55.760 -07 000000461 INF: FPGA: Recv ZSGSRD 26844
17-03-18 01:07:55.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:55.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:55.770 -07 000000625 INF: FPGA: Recv ZSGSRD 26845
17-03-18 01:07:55.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:55.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:55.780 -07 000000461 INF: FPGA: Recv ZSGSRD 26840
17-03-18 01:07:55.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:55.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:55.790 -07 000000462 INF: FPGA: Recv ZSGSRD 26843
17-03-18 01:07:55.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:55.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:55.800 -07 000000581 INF: FPGA: Recv ZSGSRD 26843
17-03-18 01:07:55.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:55.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:55.810 -07 000000629 INF: FPGA: Recv ZSGSRD 26843
17-03-18 01:07:55.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:55.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:55.820 -07 000000592 INF: FPGA: Recv ZSGSRD 26838
17-03-18 01:07:55.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:55.830 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:55.830 -07 000000462 INF: FPGA: Recv ZPIEZORD 22257
17-03-18 01:07:55.840 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:55.840 -07 000000610 INF: Z Motor: Piezo is near 27.5 V (nominally 0 to 100 V), expect near 37.6 V, since DAC is at 3.758 V. Piezo Error = -10.0 V.
17-03-18 01:07:55.840 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -112.7 um, Read 10 ADC samples: Avg = 26843 (-112.0 uncal um), Error = 0.7 uncal um, Median = 26843 (-112.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 26838 (-112.0 uncal um), Max = 26846 (-112.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:07:55.840 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 26843, posNoise = 3, negNoise = 5
17-03-18 01:07:55.840 -07 000000610 INF: Z Motor: After move to -0.112749, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:55.840 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:07:55.840 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:55.840 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:55.840 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:55.840 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:55.840 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:55.840 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:55.840 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:55.840 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:55.850 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:55.850 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:55.860 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:07:55.860 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:07:55.860 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:56.060 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:56.360 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:56.360 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:56.360 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:56.360 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1442346272, 0x0, 314322768) start.
17-03-18 01:07:56.550 -07 000000625 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:56.550 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:56.550 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall
17-03-18 01:07:56.950 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1442346272, 0x0, 314322768) end. Duration was 582 ms.
17-03-18 01:07:56.950 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:56.950 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:56.950 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-18 01:07:57.050 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:57.060 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:57.070 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=30.19]
17-03-18 01:07:57.070 -07 000000610 INF: Scanning Z-Position: -0.110747
17-03-18 01:07:57.070 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 24193, sync = True, waitForSettling = True)
17-03-18 01:07:57.070 -07 000000610 INF: Z Motor: Moving to -0.110748 mm, started at -0.112768 mm, distance = 2.02 um
17-03-18 01:07:57.070 -07 000000610 INF: FPGA: Xmit ZDACW 24193\n [Z Motor]
17-03-18 01:07:57.070 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:07:57.080 -07 000000610 INF: FPGA: 'ZDACW 24193' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:57.080 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:57.080 -07 000000629 INF: FPGA: Recv ZDACR 24193
17-03-18 01:07:57.090 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:57.090 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:57.230 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:07:57.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:07:57.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:57.240 -07 000000461 INF: FPGA: Recv ZSGSRD 26529
17-03-18 01:07:57.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:57.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:57.250 -07 000000462 INF: FPGA: Recv ZSGSRD 26531
17-03-18 01:07:57.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:57.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:57.260 -07 000000581 INF: FPGA: Recv ZSGSRD 26530
17-03-18 01:07:57.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:57.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:57.270 -07 000000462 INF: FPGA: Recv ZSGSRD 26531
17-03-18 01:07:57.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:57.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:57.280 -07 000000581 INF: FPGA: Recv ZSGSRD 26531
17-03-18 01:07:57.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:57.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:57.290 -07 000000461 INF: FPGA: Recv ZSGSRD 26529
17-03-18 01:07:57.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:57.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:57.300 -07 000000581 INF: FPGA: Recv ZSGSRD 26531
17-03-18 01:07:57.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:57.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:57.310 -07 000000461 INF: FPGA: Recv ZSGSRD 26531
17-03-18 01:07:57.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:57.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:57.320 -07 000000629 INF: FPGA: Recv ZSGSRD 26531
17-03-18 01:07:57.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:57.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:57.330 -07 000000461 INF: FPGA: Recv ZSGSRD 26529
17-03-18 01:07:57.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:57.340 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:57.340 -07 000000625 INF: FPGA: Recv ZPIEZORD 22037
17-03-18 01:07:57.350 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:57.350 -07 000000610 INF: Z Motor: Piezo is near 27.1 V (nominally 0 to 100 V), expect near 36.9 V, since DAC is at 3.692 V. Piezo Error = -9.8 V.
17-03-18 01:07:57.350 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -110.7 um, Read 10 ADC samples: Avg = 26530 (-110.0 uncal um), Error = 0.7 uncal um, Median = 26531 (-110.0 uncal um), StdDev = 1 (0.0 uncal um), Range = 2 (0.0 uncal um), Min = 26529 (-110.0 uncal um), Max = 26531 (-110.0 uncal um), Pos Noise = 1 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-18 01:07:57.350 -07 000000610 INF: Z Motor: ADC noise = 1, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 26530, posNoise = 1, negNoise = 1
17-03-18 01:07:57.350 -07 000000610 INF: Z Motor: After move to -0.110748, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:57.350 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:57.350 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:57.350 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:57.350 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:57.350 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:57.350 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:57.350 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:57.350 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:07:57.350 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:57.360 -07 000000592 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:07:57.360 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:57.370 -07 000000592 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:07:57.370 -07 000000592 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-18 01:07:57.370 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:57.570 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:57.870 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:57.870 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:57.870 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:57.870 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start.
17-03-18 01:07:58.060 -07 000000444 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:58.060 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:58.060 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall
17-03-18 01:07:58.460 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 586 ms.
17-03-18 01:07:58.460 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:58.460 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:58.460 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:07:58.560 -07 000000610 INF: ComputeBrenner start
17-03-18 01:07:58.570 -07 000000610 INF: Image SNR check: start
17-03-18 01:07:58.580 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=29.43]
17-03-18 01:07:58.580 -07 000000610 INF: Scanning Z-Position: -0.108747
17-03-18 01:07:58.580 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 23756, sync = True, waitForSettling = True)
17-03-18 01:07:58.580 -07 000000610 INF: Z Motor: Moving to -0.108748 mm, started at -0.110758 mm, distance = 2.01 um
17-03-18 01:07:58.580 -07 000000610 INF: FPGA: Xmit ZDACW 23756\n [Z Motor]
17-03-18 01:07:58.580 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:07:58.590 -07 000000610 INF: FPGA: 'ZDACW 23756' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:07:58.590 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:07:58.590 -07 000000592 INF: FPGA: Recv ZDACR 23756
17-03-18 01:07:58.600 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:58.600 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:07:58.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:58.750 -07 000000581 INF: FPGA: Recv ZSGSRD 26227
17-03-18 01:07:58.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:07:58.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:58.760 -07 000000629 INF: FPGA: Recv ZSGSRD 26220
17-03-18 01:07:58.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:58.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:58.770 -07 000000444 INF: FPGA: Recv ZSGSRD 26221
17-03-18 01:07:58.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:58.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:58.780 -07 000000625 INF: FPGA: Recv ZSGSRD 26215
17-03-18 01:07:58.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:58.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:58.790 -07 000000581 INF: FPGA: Recv ZSGSRD 26215
17-03-18 01:07:58.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:58.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:58.800 -07 000000629 INF: FPGA: Recv ZSGSRD 26227
17-03-18 01:07:58.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:58.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:58.810 -07 000000625 INF: FPGA: Recv ZSGSRD 26210
17-03-18 01:07:58.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:58.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:58.820 -07 000000629 INF: FPGA: Recv ZSGSRD 26224
17-03-18 01:07:58.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:58.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:58.830 -07 000000581 INF: FPGA: Recv ZSGSRD 26226
17-03-18 01:07:58.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:58.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:07:58.840 -07 000000592 INF: FPGA: Recv ZSGSRD 26218
17-03-18 01:07:58.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:58.850 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:07:58.850 -07 000000444 INF: FPGA: Recv ZPIEZORD 21774
17-03-18 01:07:58.860 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:07:58.860 -07 000000610 INF: Z Motor: Piezo is near 26.5 V (nominally 0 to 100 V), expect near 36.2 V, since DAC is at 3.625 V. Piezo Error = -9.7 V.
17-03-18 01:07:58.860 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -108.7 um, Read 10 ADC samples: Avg = 26220 (-108.0 uncal um), Error = 0.7 uncal um, Median = 26220 (-108.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 26210 (-108.0 uncal um), Max = 26227 (-108.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:07:58.860 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 26220, posNoise = 7, negNoise = 10
17-03-18 01:07:58.860 -07 000000610 INF: Z Motor: After move to -0.108748, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:07:58.860 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:07:58.860 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:07:58.860 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:07:58.860 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:07:58.860 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:07:58.860 -07 000000444 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:07:58.860 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:07:58.860 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:07:58.860 -07 000000444 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:07:58.870 -07 000000444 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:07:58.870 -07 000000444 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:07:58.870 -07 000000444 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:07:58.870 -07 000000444 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-18 01:07:58.880 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:07:59.080 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:07:59.380 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:07:59.380 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:07:59.380 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:07:59.380 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) start.
17-03-18 01:07:59.570 -07 000000581 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:07:59.570 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 01:07:59.570 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall
17-03-18 01:07:59.910 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.985358,
17-03-18 01:07:59.960 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) end. Duration was 586 ms.
17-03-18 01:07:59.960 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:07:59.970 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:07:59.970 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:08:00.180 -07 000000610 INF: ComputeBrenner start
17-03-18 01:08:00.190 -07 000000610 INF: Image SNR check: start
17-03-18 01:08:00.200 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=28.65]
17-03-18 01:08:00.200 -07 000000610 INF: Scanning Z-Position: -0.106747
17-03-18 01:08:00.200 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 23319, sync = True, waitForSettling = True)
17-03-18 01:08:00.200 -07 000000610 INF: Z Motor: Moving to -0.106748 mm, started at -0.108766 mm, distance = 2.02 um
17-03-18 01:08:00.200 -07 000000610 INF: FPGA: Xmit ZDACW 23319\n [Z Motor]
17-03-18 01:08:00.200 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 01:08:00.210 -07 000000610 INF: FPGA: 'ZDACW 23319' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:08:00.210 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:00.210 -07 000000581 INF: FPGA: Recv ZDACR 23319
17-03-18 01:08:00.220 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:00.220 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:00.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:00.370 -07 000000444 INF: FPGA: Recv ZSGSRD 25910
17-03-18 01:08:00.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:00.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:00.380 -07 000000590 INF: FPGA: Recv ZSGSRD 25914
17-03-18 01:08:00.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:00.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:00.390 -07 000000629 INF: FPGA: Recv ZSGSRD 25901
17-03-18 01:08:00.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:00.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:00.400 -07 000000444 INF: FPGA: Recv ZSGSRD 25911
17-03-18 01:08:00.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:00.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:00.410 -07 000000625 INF: FPGA: Recv ZSGSRD 25908
17-03-18 01:08:00.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:00.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:00.420 -07 000000444 INF: FPGA: Recv ZSGSRD 25911
17-03-18 01:08:00.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:00.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:00.430 -07 000000629 INF: FPGA: Recv ZSGSRD 25908
17-03-18 01:08:00.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:00.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:00.440 -07 000000444 INF: FPGA: Recv ZSGSRD 25902
17-03-18 01:08:00.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:00.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:00.450 -07 000000437 INF: FPGA: Recv ZSGSRD 25916
17-03-18 01:08:00.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:00.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:00.460 -07 000000444 INF: FPGA: Recv ZSGSRD 25908
17-03-18 01:08:00.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:00.470 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:00.470 -07 000000625 INF: FPGA: Recv ZPIEZORD 21521
17-03-18 01:08:00.480 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:00.480 -07 000000610 INF: Z Motor: Piezo is near 26.0 V (nominally 0 to 100 V), expect near 35.6 V, since DAC is at 3.558 V. Piezo Error = -9.6 V.
17-03-18 01:08:00.480 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -106.7 um, Read 10 ADC samples: Avg = 25909 (-106.0 uncal um), Error = 0.7 uncal um, Median = 25909 (-106.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 25901 (-106.0 uncal um), Max = 25916 (-106.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:08:00.480 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 25909, posNoise = 7, negNoise = 8
17-03-18 01:08:00.480 -07 000000610 INF: Z Motor: After move to -0.106748, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:00.480 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:08:00.480 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:00.480 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:00.480 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:00.480 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:08:00.480 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:00.490 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:00.490 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:00.490 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:08:00.490 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:00.490 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:08:00.500 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:08:00.500 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-18 01:08:00.500 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:00.700 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:08:01.000 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:08:01.000 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:08:01.000 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:08:01.010 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:08:01.190 -07 000000444 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:08:01.190 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:01.190 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 689 ms overall
17-03-18 01:08:01.590 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 580 ms.
17-03-18 01:08:01.590 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:01.590 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:08:01.590 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-18 01:08:01.690 -07 000000610 INF: ComputeBrenner start
17-03-18 01:08:01.700 -07 000000610 INF: Image SNR check: start
17-03-18 01:08:01.710 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=27.81]
17-03-18 01:08:01.710 -07 000000610 INF: Scanning Z-Position: -0.104747
17-03-18 01:08:01.710 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 22882, sync = True, waitForSettling = True)
17-03-18 01:08:01.710 -07 000000610 INF: Z Motor: Moving to -0.104747 mm, started at -0.106768 mm, distance = 2.02 um
17-03-18 01:08:01.710 -07 000000610 INF: FPGA: Xmit ZDACW 22882\n [Z Motor]
17-03-18 01:08:01.710 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:08:01.720 -07 000000610 INF: FPGA: 'ZDACW 22882' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:08:01.720 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:01.720 -07 000000581 INF: FPGA: Recv ZDACR 22882
17-03-18 01:08:01.730 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:01.730 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:01.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:01.880 -07 000000444 INF: FPGA: Recv ZSGSRD 25600
17-03-18 01:08:01.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:01.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:01.890 -07 000000581 INF: FPGA: Recv ZSGSRD 25599
17-03-18 01:08:01.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:01.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:01.900 -07 000000444 INF: FPGA: Recv ZSGSRD 25598
17-03-18 01:08:01.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:01.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:01.910 -07 000000592 INF: FPGA: Recv ZSGSRD 25595
17-03-18 01:08:01.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:01.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:01.920 -07 000000444 INF: FPGA: Recv ZSGSRD 25596
17-03-18 01:08:01.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:01.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:01.930 -07 000000487 INF: FPGA: Recv ZSGSRD 25596
17-03-18 01:08:01.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:01.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:01.940 -07 000000625 INF: FPGA: Recv ZSGSRD 25601
17-03-18 01:08:01.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:01.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:01.950 -07 000000487 INF: FPGA: Recv ZSGSRD 25597
17-03-18 01:08:01.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:01.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:01.960 -07 000000625 INF: FPGA: Recv ZSGSRD 25599
17-03-18 01:08:01.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:01.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:01.970 -07 000000487 INF: FPGA: Recv ZSGSRD 25600
17-03-18 01:08:01.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:01.980 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:01.980 -07 000000590 INF: FPGA: Recv ZPIEZORD 21280
17-03-18 01:08:01.990 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:01.990 -07 000000610 INF: Z Motor: Piezo is near 25.5 V (nominally 0 to 100 V), expect near 34.9 V, since DAC is at 3.492 V. Piezo Error = -9.5 V.
17-03-18 01:08:01.990 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -104.7 um, Read 10 ADC samples: Avg = 25598 (-104.1 uncal um), Error = 0.7 uncal um, Median = 25598 (-104.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 25595 (-104.0 uncal um), Max = 25601 (-104.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:08:01.990 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 25598, posNoise = 3, negNoise = 3
17-03-18 01:08:01.990 -07 000000610 INF: Z Motor: After move to -0.104747, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:01.990 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:08:01.990 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:01.990 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:01.990 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:01.990 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:01.990 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:08:01.990 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:01.990 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:01.990 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:08:02.000 -07 000000581 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:02.000 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:08:02.010 -07 000000581 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:08:02.010 -07 000000581 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-18 01:08:02.010 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:02.210 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:08:02.230 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:08:02.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:08:02.510 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:08:02.510 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:08:02.510 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:08:02.510 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1442346272, 0x0, 314322768) start.
17-03-18 01:08:02.700 -07 000000581 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:08:02.700 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:02.700 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 683 ms to get response, and 689 ms overall
17-03-18 01:08:03.090 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1442346272, 0x0, 314322768) end. Duration was 579 ms.
17-03-18 01:08:03.090 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:03.100 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:08:03.100 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-18 01:08:03.200 -07 000000610 INF: ComputeBrenner start
17-03-18 01:08:03.210 -07 000000610 INF: Image SNR check: start
17-03-18 01:08:03.220 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=26.05]
17-03-18 01:08:03.220 -07 000000610 INF: Scanning Z-Position: -0.102747
17-03-18 01:08:03.220 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 22445, sync = True, waitForSettling = True)
17-03-18 01:08:03.220 -07 000000610 INF: Z Motor: Moving to -0.102747 mm, started at -0.104770 mm, distance = 2.02 um
17-03-18 01:08:03.220 -07 000000610 INF: FPGA: Xmit ZDACW 22445\n [Z Motor]
17-03-18 01:08:03.220 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:08:03.230 -07 000000610 INF: FPGA: 'ZDACW 22445' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:08:03.230 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:03.230 -07 000000444 INF: FPGA: Recv ZDACR 22445
17-03-18 01:08:03.240 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:03.240 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:03.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:03.390 -07 000000581 INF: FPGA: Recv ZSGSRD 25286
17-03-18 01:08:03.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:03.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:03.400 -07 000000581 INF: FPGA: Recv ZSGSRD 25292
17-03-18 01:08:03.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:03.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:03.410 -07 000000581 INF: FPGA: Recv ZSGSRD 25288
17-03-18 01:08:03.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:03.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:03.420 -07 000000437 INF: FPGA: Recv ZSGSRD 25283
17-03-18 01:08:03.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:03.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:03.430 -07 000000625 INF: FPGA: Recv ZSGSRD 25288
17-03-18 01:08:03.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:03.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:03.440 -07 000000437 INF: FPGA: Recv ZSGSRD 25288
17-03-18 01:08:03.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:03.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:03.450 -07 000000487 INF: FPGA: Recv ZSGSRD 25288
17-03-18 01:08:03.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:03.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:03.460 -07 000000581 INF: FPGA: Recv ZSGSRD 25283
17-03-18 01:08:03.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:03.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:03.470 -07 000000590 INF: FPGA: Recv ZSGSRD 25284
17-03-18 01:08:03.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:03.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:03.480 -07 000000444 INF: FPGA: Recv ZSGSRD 25288
17-03-18 01:08:03.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:03.490 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:03.490 -07 000000590 INF: FPGA: Recv ZPIEZORD 21008
17-03-18 01:08:03.500 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:03.500 -07 000000610 INF: Z Motor: Piezo is near 24.9 V (nominally 0 to 100 V), expect near 34.2 V, since DAC is at 3.425 V. Piezo Error = -9.4 V.
17-03-18 01:08:03.500 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -102.7 um, Read 10 ADC samples: Avg = 25287 (-102.1 uncal um), Error = 0.7 uncal um, Median = 25288 (-102.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 25283 (-102.0 uncal um), Max = 25292 (-102.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:08:03.500 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 25287, posNoise = 5, negNoise = 4
17-03-18 01:08:03.500 -07 000000610 INF: Z Motor: After move to -0.102747, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:03.500 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:08:03.500 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:03.500 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:03.500 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:03.500 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:03.500 -07 000000590 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:08:03.500 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:03.500 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:03.500 -07 000000590 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:08:03.510 -07 000000590 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:08:03.510 -07 000000590 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:08:03.520 -07 000000590 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 01:08:03.520 -07 000000590 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 18 ms.
17-03-18 01:08:03.520 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:03.720 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:08:04.020 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:08:04.020 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:08:04.020 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:08:04.020 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start.
17-03-18 01:08:04.210 -07 000000625 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:08:04.210 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:04.210 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 687 ms to get response, and 690 ms overall
17-03-18 01:08:04.610 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 588 ms.
17-03-18 01:08:04.610 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:04.610 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:08:04.610 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-18 01:08:04.710 -07 000000610 INF: ComputeBrenner start
17-03-18 01:08:04.720 -07 000000610 INF: Image SNR check: start
17-03-18 01:08:04.730 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=25.86]
17-03-18 01:08:04.730 -07 000000610 INF: Scanning Z-Position: -0.100747
17-03-18 01:08:04.730 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 22008, sync = True, waitForSettling = True)
17-03-18 01:08:04.730 -07 000000610 INF: Z Motor: Moving to -0.100746 mm, started at -0.102772 mm, distance = 2.03 um
17-03-18 01:08:04.730 -07 000000610 INF: FPGA: Xmit ZDACW 22008\n [Z Motor]
17-03-18 01:08:04.730 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:08:04.740 -07 000000610 INF: FPGA: 'ZDACW 22008' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:08:04.740 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:04.740 -07 000000487 INF: FPGA: Recv ZDACR 22008
17-03-18 01:08:04.750 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:04.750 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:04.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:04.900 -07 000000581 INF: FPGA: Recv ZSGSRD 24977
17-03-18 01:08:04.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:04.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:04.910 -07 000000437 INF: FPGA: Recv ZSGSRD 24977
17-03-18 01:08:04.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:04.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:04.920 -07 000000487 INF: FPGA: Recv ZSGSRD 24977
17-03-18 01:08:04.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:04.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:04.930 -07 000000590 INF: FPGA: Recv ZSGSRD 24976
17-03-18 01:08:04.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:04.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:04.940 -07 000000444 INF: FPGA: Recv ZSGSRD 24976
17-03-18 01:08:04.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:04.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:04.960 -07 000000487 INF: FPGA: Recv ZSGSRD 24971
17-03-18 01:08:04.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:08:04.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:04.970 -07 000000437 INF: FPGA: Recv ZSGSRD 24976
17-03-18 01:08:04.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:04.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:04.980 -07 000000487 INF: FPGA: Recv ZSGSRD 24979
17-03-18 01:08:04.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:04.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:04.990 -07 000000625 INF: FPGA: Recv ZSGSRD 24975
17-03-18 01:08:05.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:05.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:05.000 -07 000000590 INF: FPGA: Recv ZSGSRD 24977
17-03-18 01:08:05.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:05.010 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:05.010 -07 000000625 INF: FPGA: Recv ZPIEZORD 20783
17-03-18 01:08:05.020 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:05.020 -07 000000610 INF: Z Motor: Piezo is near 24.4 V (nominally 0 to 100 V), expect near 33.6 V, since DAC is at 3.358 V. Piezo Error = -9.2 V.
17-03-18 01:08:05.020 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -100.7 um, Read 10 ADC samples: Avg = 24976 (-100.1 uncal um), Error = 0.7 uncal um, Median = 24976 (-100.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 24971 (-100.0 uncal um), Max = 24979 (-100.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:08:05.020 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 24976, posNoise = 3, negNoise = 5
17-03-18 01:08:05.020 -07 000000610 INF: Z Motor: After move to -0.100746, error = -0.000028, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:05.020 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 01:08:05.020 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:05.020 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:05.020 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:05.020 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:05.020 -07 000000625 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:08:05.020 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:05.020 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:08:05.020 -07 000000625 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:08:05.030 -07 000000625 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:05.030 -07 000000625 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:08:05.030 -07 000000625 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:08:05.030 -07 000000625 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-18 01:08:05.040 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:05.230 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:08:05.270 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.971733,
17-03-18 01:08:05.530 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:08:05.530 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:08:05.540 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:08:05.540 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) start.
17-03-18 01:08:05.730 -07 000000625 INF: FPGA: Recv @CAMSNAP 686
17-03-18 01:08:05.730 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:05.730 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 682 ms to get response, and 690 ms overall
17-03-18 01:08:06.120 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) end. Duration was 586 ms.
17-03-18 01:08:06.120 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:06.130 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:08:06.130 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:08:06.340 -07 000000610 INF: ComputeBrenner start
17-03-18 01:08:06.350 -07 000000610 INF: Image SNR check: start
17-03-18 01:08:06.360 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=24.54]
17-03-18 01:08:06.360 -07 000000610 INF: Scanning Z-Position: -0.098747
17-03-18 01:08:06.360 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 21571, sync = True, waitForSettling = True)
17-03-18 01:08:06.360 -07 000000610 INF: Z Motor: Moving to -0.098746 mm, started at -0.100774 mm, distance = 2.03 um
17-03-18 01:08:06.360 -07 000000610 INF: FPGA: Xmit ZDACW 21571\n [Z Motor]
17-03-18 01:08:06.360 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:08:06.370 -07 000000610 INF: FPGA: 'ZDACW 21571' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:08:06.370 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:06.370 -07 000000581 INF: FPGA: Recv ZDACR 21571
17-03-18 01:08:06.380 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:06.380 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:06.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:06.530 -07 000000590 INF: FPGA: Recv ZSGSRD 24664
17-03-18 01:08:06.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:06.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:06.540 -07 000000487 INF: FPGA: Recv ZSGSRD 24666
17-03-18 01:08:06.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:06.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:06.550 -07 000000590 INF: FPGA: Recv ZSGSRD 24667
17-03-18 01:08:06.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:06.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:06.560 -07 000000581 INF: FPGA: Recv ZSGSRD 24670
17-03-18 01:08:06.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:06.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:06.570 -07 000000590 INF: FPGA: Recv ZSGSRD 24661
17-03-18 01:08:06.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:06.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:06.580 -07 000000581 INF: FPGA: Recv ZSGSRD 24665
17-03-18 01:08:06.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:06.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:06.590 -07 000000437 INF: FPGA: Recv ZSGSRD 24664
17-03-18 01:08:06.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:06.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:06.600 -07 000000581 INF: FPGA: Recv ZSGSRD 24661
17-03-18 01:08:06.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:06.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:06.610 -07 000000437 INF: FPGA: Recv ZSGSRD 24668
17-03-18 01:08:06.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:06.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:06.620 -07 000000581 INF: FPGA: Recv ZSGSRD 24661
17-03-18 01:08:06.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:06.630 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:06.630 -07 000000487 INF: FPGA: Recv ZPIEZORD 20517
17-03-18 01:08:06.640 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:06.640 -07 000000610 INF: Z Motor: Piezo is near 23.8 V (nominally 0 to 100 V), expect near 32.9 V, since DAC is at 3.292 V. Piezo Error = -9.1 V.
17-03-18 01:08:06.640 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -98.7 um, Read 10 ADC samples: Avg = 24665 (-98.1 uncal um), Error = 0.7 uncal um, Median = 24664 (-98.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 24661 (-98.0 uncal um), Max = 24670 (-98.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:08:06.640 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 24665, posNoise = 5, negNoise = 4
17-03-18 01:08:06.640 -07 000000610 INF: Z Motor: After move to -0.098746, error = -0.000031, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:06.640 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:08:06.640 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:06.640 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:06.640 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:06.640 -07 000000487 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-18 01:08:06.640 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:06.640 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:06.650 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:08:06.650 -07 000000487 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-18 01:08:06.650 -07 000000487 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:06.650 -07 000000487 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-18 01:08:06.660 -07 000000487 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:08:06.660 -07 000000487 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-18 01:08:06.660 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:06.860 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-18 01:08:07.160 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 492
17-03-18 01:08:07.160 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492
17-03-18 01:08:07.160 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-18 01:08:07.170 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-18 01:08:07.230 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:08:07.350 -07 000000590 INF: FPGA: Recv @CAMSNAP 685
17-03-18 01:08:07.350 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:07.350 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 687 ms to get response, and 689 ms overall
17-03-18 01:08:07.750 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 581 ms.
17-03-18 01:08:07.750 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:07.750 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:08:07.750 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-18 01:08:07.830 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:08:07.850 -07 000000610 INF: ComputeBrenner start
17-03-18 01:08:07.860 -07 000000610 INF: Image SNR check: start
17-03-18 01:08:07.870 -07 000000610 INF: Image SNR check: image is Faint  [peak (Max-Min)=24.31]
17-03-18 01:08:07.870 -07 000000610 INF: Through-focus: Z pos. [um] vs. Focus metric
17-03-18 01:08:07.870 -07 000000610 INF:   -178.747  2.115195
17-03-18 01:08:07.870 -07 000000610 INF:   -176.747  2.116904
17-03-18 01:08:07.870 -07 000000610 INF:   -174.747  2.107057
17-03-18 01:08:07.870 -07 000000610 INF:   -172.747  2.102155
17-03-18 01:08:07.870 -07 000000610 INF:   -170.747  2.103064
17-03-18 01:08:07.870 -07 000000610 INF:   -168.747  2.110147
17-03-18 01:08:07.870 -07 000000610 INF:   -166.747  2.106574
17-03-18 01:08:07.870 -07 000000610 INF:   -164.747  2.107129
17-03-18 01:08:07.870 -07 000000610 INF:   -162.747  2.108187
17-03-18 01:08:07.870 -07 000000610 INF:   -160.747  2.106225
17-03-18 01:08:07.870 -07 000000610 INF:   -158.747  2.107322
17-03-18 01:08:07.870 -07 000000610 INF:   -156.747  2.107142
17-03-18 01:08:07.870 -07 000000610 INF:   -154.747  2.104699
17-03-18 01:08:07.870 -07 000000610 INF:   -152.747  2.109777
17-03-18 01:08:07.870 -07 000000610 INF:   -150.747  2.107198
17-03-18 01:08:07.870 -07 000000610 INF:   -148.747  2.106749
17-03-18 01:08:07.870 -07 000000610 INF:   -146.747  2.120761
17-03-18 01:08:07.870 -07 000000610 INF:   -144.747  2.119223
17-03-18 01:08:07.870 -07 000000610 INF:   -142.747  2.135043
17-03-18 01:08:07.870 -07 000000610 INF:   -140.747  2.165746
17-03-18 01:08:07.870 -07 000000610 INF:   -138.747  2.25264
17-03-18 01:08:07.870 -07 000000610 INF:   -136.747  2.622216
17-03-18 01:08:07.870 -07 000000610 INF:   -134.747  5.573154
17-03-18 01:08:07.870 -07 000000610 INF:   -132.747  9.541002
17-03-18 01:08:07.870 -07 000000610 INF:   -130.747  3.057279
17-03-18 01:08:07.870 -07 000000610 INF:   -128.747  2.221343
17-03-18 01:08:07.870 -07 000000610 INF:   -126.747  2.132526
17-03-18 01:08:07.870 -07 000000610 INF:   -124.747  2.113773
17-03-18 01:08:07.870 -07 000000610 INF:   -122.747  2.109884
17-03-18 01:08:07.870 -07 000000610 INF:   -120.747  2.102975
17-03-18 01:08:07.870 -07 000000610 INF:   -118.747  2.098626
17-03-18 01:08:07.870 -07 000000610 INF:   -116.747  2.111289
17-03-18 01:08:07.870 -07 000000610 INF:   -114.747  2.104561
17-03-18 01:08:07.870 -07 000000610 INF:   -112.747  2.098468
17-03-18 01:08:07.870 -07 000000610 INF:   -110.747  2.107426
17-03-18 01:08:07.870 -07 000000610 INF:   -108.747  2.101518
17-03-18 01:08:07.870 -07 000000610 INF:   -106.747  2.106031
17-03-18 01:08:07.870 -07 000000610 INF:   -104.747  2.110109
17-03-18 01:08:07.870 -07 000000610 INF:   -102.747  2.102069
17-03-18 01:08:07.870 -07 000000610 INF:   -100.747  2.112152
17-03-18 01:08:07.870 -07 000000610 INF:   -98.747  2.102285
17-03-18 01:08:07.870 -07 000000610 INF: Best-focus Z [um]: -133.1715
17-03-18 01:08:07.870 -07 000000610 INF: =================== Cycle #83, Imaging ===================
17-03-18 01:08:07.870 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 59.91015625, Z-Position -0.0987765444876691. ------
17-03-18 01:08:07.870 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:07.870 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13917 mm
17-03-18 01:08:07.870 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:08:07.880 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:07.880 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:08:07.880 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:08:07.880 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 30402, sync = True, waitForSettling = False)
17-03-18 01:08:07.880 -07 000000474 INF: Z Motor: Moving to -0.139171 mm, started at -0.098777 mm, distance = -40.39 um
17-03-18 01:08:07.880 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:08:07.880 -07 000000437 INF: Y Motor: Moving to 59.9126 mm, started at 59.9102 mm, delta = 0.0025 mm
17-03-18 01:08:07.890 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:07.890 -07 000000625 INF: FPGA: Recv YRDPOS 122696
17-03-18 01:08:07.900 -07 000000474 INF: FPGA: Xmit ZDACW 30402\n [Z Motor]
17-03-18 01:08:07.900 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:08:07.900 -07 000000437 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:07.900 -07 000000437 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.0000 mm (0.0 steps). UsingTableMove = False
17-03-18 01:08:07.900 -07 000000437 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:08:07.900 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:08:07.910 -07 000000474 INF: FPGA: 'ZDACW 30402' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 01:08:07.910 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:07.910 -07 000000592 INF: FPGA: Recv ZDACR 30402
17-03-18 01:08:07.920 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:07.920 -07 000000474 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 01:08:07.920 -07 000000437 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:08:07.950 -07 000000444 INF: FPGA: Recv YMVTO 122700 10
17-03-18 01:08:07.950 -07 000000437 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 27 ms to get response, and 56 ms overall
17-03-18 01:08:07.950 -07 000000437 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 01:08:07.950 -07 000000437 INF: Y Motor: To move from 59.910 to 59.913 (0.002 mm) should take 4 steps, but required 10 steps (0.006 mm). Slippage = 0.004 mm (1.53%).
17-03-18 01:08:07.950 -07 000000437 INF: Y Motor: FPGA move command 'YMVTO 122701' took 57 ms, distance = 0.002 mm, average velocity = 0.043 mm/sec
17-03-18 01:08:08.080 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:08:08.080 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 01:08:10.630 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.989471,
17-03-18 01:08:10.800 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:10.800 -07 000000592 INF: FPGA: Recv YRDPOS 122709
17-03-18 01:08:10.810 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:10.810 -07 000000437 INF: Y Motor: Encoder = 122709 = motor step 95866.4 = 59.9165 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:10.820 -07 000000437 INF: Y Motor: After move to 59.912609, error = 0.003895, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:08:10.820 -07 000000437 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 9 counts (0.004 mm)
17-03-18 01:08:10.820 -07 000000437 INF: Y Motor: Moved to 59.9165 after 2942 ms
17-03-18 01:08:10.830 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139171 mm (DAC = 30402)
17-03-18 01:08:10.830 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:10.830 -07 000000592 INF: FPGA: Recv ZSGSRD 30957
17-03-18 01:08:10.840 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:10.840 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:10.840 -07 000000590 INF: FPGA: Recv ZSGSRD 30959
17-03-18 01:08:10.850 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:10.850 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:10.850 -07 000000437 INF: FPGA: Recv ZSGSRD 30953
17-03-18 01:08:10.860 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:10.860 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:10.860 -07 000000437 INF: FPGA: Recv ZSGSRD 30951
17-03-18 01:08:10.870 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:10.870 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:10.870 -07 000000592 INF: FPGA: Recv ZSGSRD 30956
17-03-18 01:08:10.880 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:10.880 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:10.880 -07 000000590 INF: FPGA: Recv ZSGSRD 30952
17-03-18 01:08:10.890 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:10.890 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:10.890 -07 000000625 INF: FPGA: Recv ZSGSRD 30951
17-03-18 01:08:10.900 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:10.900 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:10.900 -07 000000590 INF: FPGA: Recv ZSGSRD 30957
17-03-18 01:08:10.910 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:10.910 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:10.910 -07 000000625 INF: FPGA: Recv ZSGSRD 30954
17-03-18 01:08:10.920 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:10.920 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:10.920 -07 000000625 INF: FPGA: Recv ZSGSRD 30952
17-03-18 01:08:10.930 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:10.930 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:10.930 -07 000000592 INF: FPGA: Recv ZPIEZORD 27547
17-03-18 01:08:10.940 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:10.940 -07 000000461 INF: Z Motor: Piezo is near 38.8 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.639 V. Piezo Error = -7.5 V.
17-03-18 01:08:10.940 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30954 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30954 (-138.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30951 (-138.4 uncal um), Max = 30959 (-138.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:08:10.940 -07 000000461 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30954, posNoise = 5, negNoise = 3
17-03-18 01:08:10.940 -07 000000461 INF: Z Motor: After move to -0.139171, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:10.940 -07 000000461 INF: Z Motor: Settle wait time = 2947 ms, measure time = 110 ms (allowed 150 ms), total time = 3057 ms
17-03-18 01:08:10.940 -07 000000461 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:08:10.980 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3101 ms
17-03-18 01:08:10.980 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:08:10.980 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:10.980 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:10.980 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:10.980 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:10.980 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:08:10.980 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:10.980 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:10.980 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:08:10.990 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:10.990 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:08:11.000 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:08:11.000 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:08:11.000 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:11.050 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:08:11.350 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:08:11.350 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:08:11.350 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:08:11.350 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442346272, 0x0, 559484976) start.
17-03-18 01:08:11.390 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:08:11.390 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:11.390 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:08:11.480 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442346272, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:08:11.480 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:11.480 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:08:11.480 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:08:11.490 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:11.490 -07 000000625 INF: Image SNR check: start
17-03-18 01:08:11.490 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:11.500 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:08:11.500 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:08:11.500 -07 000000625 INF: Image SNR check: pass  [peak (Max-Min)=151.63]
17-03-18 01:08:11.500 -07 000000625 INF: Autofocus start
17-03-18 01:08:11.500 -07 000000625 INF: MeasureProfile start
17-03-18 01:08:11.510 -07 000000625 INF: MeasureProfile done
17-03-18 01:08:11.510 -07 000000625 INF: X=-80  Z correction [um]=-0.3928285
17-03-18 01:08:11.510 -07 000000625 INF: Autofocus finished
17-03-18 01:08:11.700 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:08:11.700 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:08:11.700 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91650390625, Z-position -0.139178414647204. ----------
17-03-18 01:08:11.700 -07 000000610 INF: Cycle	83	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:08:11.710 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28829, sync = True, waitForSettling = True)
17-03-18 01:08:11.710 -07 000000610 INF: Z Motor: Moving to -0.131971 mm, started at -0.139178 mm, distance = 7.21 um
17-03-18 01:08:11.710 -07 000000610 INF: FPGA: Xmit ZDACW 28829\n [Z Motor]
17-03-18 01:08:11.710 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:08:11.720 -07 000000610 INF: FPGA: 'ZDACW 28829' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:11.720 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:11.720 -07 000000461 INF: FPGA: Recv ZDACR 28829
17-03-18 01:08:11.730 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:11.730 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:11.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:11.880 -07 000000592 INF: FPGA: Recv ZSGSRD 29831
17-03-18 01:08:11.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:11.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:11.890 -07 000000437 INF: FPGA: Recv ZSGSRD 29841
17-03-18 01:08:11.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:11.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:11.900 -07 000000592 INF: FPGA: Recv ZSGSRD 29830
17-03-18 01:08:11.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:11.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:11.910 -07 000000592 INF: FPGA: Recv ZSGSRD 29825
17-03-18 01:08:11.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:11.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:11.920 -07 000000592 INF: FPGA: Recv ZSGSRD 29838
17-03-18 01:08:11.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:11.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:11.930 -07 000000437 INF: FPGA: Recv ZSGSRD 29835
17-03-18 01:08:11.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:11.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:11.940 -07 000000461 INF: FPGA: Recv ZSGSRD 29836
17-03-18 01:08:11.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:11.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:11.950 -07 000000625 INF: FPGA: Recv ZSGSRD 29834
17-03-18 01:08:11.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:11.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:11.960 -07 000000579 INF: FPGA: Recv ZSGSRD 29834
17-03-18 01:08:11.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:11.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:11.970 -07 000000625 INF: FPGA: Recv ZSGSRD 29835
17-03-18 01:08:11.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:11.980 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:11.980 -07 000000581 INF: FPGA: Recv ZPIEZORD 26102
17-03-18 01:08:11.990 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:11.990 -07 000000610 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -8.2 V.
17-03-18 01:08:11.990 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29834 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29834 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29825 (-131.1 uncal um), Max = 29841 (-131.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:08:11.990 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29834, posNoise = 7, negNoise = 9
17-03-18 01:08:11.990 -07 000000610 INF: Z Motor: After move to -0.131971, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:11.990 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:08:11.990 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:11.990 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:11.990 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:11.990 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:11.990 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:08:11.990 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:11.990 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:08:11.990 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:08:11.990 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:11.990 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:08:11.990 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:08:11.990 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:08:11.990 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:08:12.000 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:08:12.010 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:08:12.010 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:08:12.010 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 01:08:12.010 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:08:12.020 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:08:12.020 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:08:12.030 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 01:08:12.030 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 01:08:12.030 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29005 150\n [Camera]
17-03-18 01:08:12.230 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:08:12.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:08:12.230 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:08:12.620 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:08:12.620 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:08:12.620 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:12.620 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:12.620 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:08:12.630 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:08:12.630 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:08:12.630 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:12.630 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:12.630 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:08:12.820 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29005 775
17-03-18 01:08:12.970 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:08:13.030 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:08:13.030 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:08:13.030 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:13.030 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:13.030 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:08:13.030 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:08:13.030 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:08:13.030 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:13.030 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:13.040 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:08:13.150 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:08:13.150 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:08:13.160 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:13.270 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:08:13.270 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:08:13.270 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:13.270 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:13.270 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:08:13.270 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:13.270 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:08:13.350 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:08:13.350 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:08:13.350 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29005 150' command took 2 ms to send, 1300 ms to get response, and 1313 ms overall
17-03-18 01:08:13.350 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:08:13.350 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91650390625, Z-Position -0.131983297048431. ------
17-03-18 01:08:13.350 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:13.350 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13878 mm
17-03-18 01:08:13.350 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:08:13.360 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:13.360 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:08:13.360 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30316, sync = True, waitForSettling = False)
17-03-18 01:08:13.360 -07 000000579 INF: Z Motor: Moving to -0.138778 mm, started at -0.131983 mm, distance = -6.79 um
17-03-18 01:08:13.360 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:08:13.360 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:08:13.360 -07 000000462 INF: Y Motor: Moving to 60.7426 mm, started at 59.9165 mm, delta = 0.8261 mm
17-03-18 01:08:13.370 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:13.370 -07 000000461 INF: FPGA: Recv YRDPOS 122709
17-03-18 01:08:13.380 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:08:13.380 -07 000000462 INF: Y Motor: Encoder = 122709 = motor step 95866.4 = 59.9165 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:13.380 -07 000000462 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:08:13.380 -07 000000462 INF: Y Motor: Moving 1322 steps-1
17-03-18 01:08:13.380 -07 000000579 INF: FPGA: Xmit ZDACW 30316\n [Z Motor]
17-03-18 01:08:13.380 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:08:13.390 -07 000000579 INF: FPGA: 'ZDACW 30316' command took 3 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:08:13.390 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:08:13.400 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:13.400 -07 000000444 INF: FPGA: Recv ZDACR 30316
17-03-18 01:08:13.410 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:08:13.410 -07 000000579 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 01:08:13.560 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:08:13.560 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 01:08:13.650 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:08:13.650 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 01:08:13.650 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:13.660 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:13.660 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:08:13.660 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:08:13.660 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:13.660 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:08:13.660 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:13.660 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-18 01:08:13.760 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:08:13.760 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 01:08:13.800 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:13.800 -07 000000437 INF: FPGA: Recv YRDPOS 124393
17-03-18 01:08:13.810 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:08:13.810 -07 000000462 INF: Y Motor: Encoder = 124393 = motor step 97182.0 = 60.7388 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:13.810 -07 000000462 INF: Y Motor: Position error before settling (table move) = -8 encoder counts (-0.004 mm)
17-03-18 01:08:13.810 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.826 mm, average velocity = 2.146 mm/sec
17-03-18 01:08:14.760 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:14.760 -07 000000474 INF: FPGA: Recv YRDPOS 124393
17-03-18 01:08:14.770 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:14.770 -07 000000462 INF: Y Motor: Encoder = 124393 = motor step 97182.0 = 60.7388 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:14.770 -07 000000462 INF: Y Motor: After move to 60.742607, error = -0.003838, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:08:14.770 -07 000000462 INF: Y Motor: Position error after settling (table move) = -8 encoder counts (-0.004 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:08:14.770 -07 000000462 INF: Y Motor: Moved to 60.7388 after 1416 ms (table move)
17-03-18 01:08:14.780 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138778 mm (DAC = 30316)
17-03-18 01:08:14.780 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:14.780 -07 000000487 INF: FPGA: Recv ZSGSRD 30902
17-03-18 01:08:14.790 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:08:14.790 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:14.790 -07 000000579 INF: FPGA: Recv ZSGSRD 30898
17-03-18 01:08:14.800 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:14.800 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:14.800 -07 000000579 INF: FPGA: Recv ZSGSRD 30897
17-03-18 01:08:14.810 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:14.810 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:14.810 -07 000000579 INF: FPGA: Recv ZSGSRD 30896
17-03-18 01:08:14.820 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:14.820 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:14.820 -07 000000487 INF: FPGA: Recv ZSGSRD 30896
17-03-18 01:08:14.830 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:14.830 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:14.830 -07 000000462 INF: FPGA: Recv ZSGSRD 30896
17-03-18 01:08:14.840 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:14.840 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:14.840 -07 000000487 INF: FPGA: Recv ZSGSRD 30894
17-03-18 01:08:14.850 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:14.850 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:14.850 -07 000000444 INF: FPGA: Recv ZSGSRD 30890
17-03-18 01:08:14.860 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:14.860 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:14.860 -07 000000487 INF: FPGA: Recv ZSGSRD 30891
17-03-18 01:08:14.870 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:14.870 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:14.870 -07 000000487 INF: FPGA: Recv ZSGSRD 30896
17-03-18 01:08:14.880 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:14.880 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:14.880 -07 000000462 INF: FPGA: Recv ZPIEZORD 27435
17-03-18 01:08:14.890 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:14.890 -07 000000592 INF: Z Motor: Piezo is near 38.6 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.626 V. Piezo Error = -7.7 V.
17-03-18 01:08:14.890 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30896 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30896 (-138.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30890 (-138.0 uncal um), Max = 30902 (-138.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:08:14.890 -07 000000592 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30896, posNoise = 6, negNoise = 6
17-03-18 01:08:14.890 -07 000000592 INF: Z Motor: After move to -0.138778, error = -0.000028, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:14.890 -07 000000592 INF: Z Motor: Settle wait time = 1422 ms, measure time = 107 ms (allowed 150 ms), total time = 1529 ms
17-03-18 01:08:14.890 -07 000000592 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:08:14.940 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-18 01:08:14.940 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:08:14.940 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:14.940 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:14.940 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:14.940 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:08:14.940 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:14.940 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:14.940 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:14.940 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:08:14.950 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:14.950 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:08:14.960 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:08:14.960 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:08:14.960 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:15.010 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:08:15.310 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:08:15.310 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:08:15.310 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:08:15.310 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 01:08:15.340 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:08:15.350 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:15.350 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:08:15.430 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 01:08:15.430 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:15.430 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:08:15.430 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 01:08:15.450 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:15.450 -07 000000462 INF: Autofocus start
17-03-18 01:08:15.450 -07 000000462 INF: MeasureProfile start
17-03-18 01:08:15.450 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:15.460 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:08:15.460 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:08:15.460 -07 000000462 INF: MeasureProfile done
17-03-18 01:08:15.460 -07 000000462 INF: X=-96  Z correction [um]=-0.4707136
17-03-18 01:08:15.460 -07 000000462 INF: Autofocus finished
17-03-18 01:08:15.660 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:08:15.660 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:08:15.660 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73876953125, Z-position -0.138805810342982. ----------
17-03-18 01:08:15.660 -07 000000610 INF: Cycle	83	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:08:15.670 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28726, sync = True, waitForSettling = True)
17-03-18 01:08:15.670 -07 000000610 INF: Z Motor: Moving to -0.131499 mm, started at -0.138806 mm, distance = 7.31 um
17-03-18 01:08:15.680 -07 000000610 INF: FPGA: Xmit ZDACW 28726\n [Z Motor]
17-03-18 01:08:15.680 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:08:15.690 -07 000000610 INF: FPGA: 'ZDACW 28726' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:08:15.690 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:15.690 -07 000000462 INF: FPGA: Recv ZDACR 28726
17-03-18 01:08:15.700 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:15.700 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:15.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:15.850 -07 000000444 INF: FPGA: Recv ZSGSRD 29756
17-03-18 01:08:15.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:15.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:15.860 -07 000000592 INF: FPGA: Recv ZSGSRD 29760
17-03-18 01:08:15.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:15.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:15.870 -07 000000444 INF: FPGA: Recv ZSGSRD 29760
17-03-18 01:08:15.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:15.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:15.880 -07 000000444 INF: FPGA: Recv ZSGSRD 29755
17-03-18 01:08:15.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:15.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:15.890 -07 000000592 INF: FPGA: Recv ZSGSRD 29760
17-03-18 01:08:15.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:15.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:15.900 -07 000000487 INF: FPGA: Recv ZSGSRD 29761
17-03-18 01:08:15.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:15.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:15.910 -07 000000592 INF: FPGA: Recv ZSGSRD 29760
17-03-18 01:08:15.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:15.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:15.920 -07 000000462 INF: FPGA: Recv ZSGSRD 29756
17-03-18 01:08:15.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:15.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:15.930 -07 000000487 INF: FPGA: Recv ZSGSRD 29763
17-03-18 01:08:15.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:15.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:15.940 -07 000000462 INF: FPGA: Recv ZSGSRD 29764
17-03-18 01:08:15.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:15.950 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:15.950 -07 000000462 INF: FPGA: Recv ZPIEZORD 25992
17-03-18 01:08:15.960 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:15.960 -07 000000610 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.383 V. Piezo Error = -8.3 V.
17-03-18 01:08:15.960 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29760 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29760 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29755 (-130.7 uncal um), Max = 29764 (-130.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:08:15.960 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29760, posNoise = 4, negNoise = 5
17-03-18 01:08:15.960 -07 000000610 INF: Z Motor: After move to -0.131499, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:15.960 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 01:08:15.960 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:15.960 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:15.960 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:15.960 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:15.960 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:08:15.960 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:08:15.960 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:08:15.960 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:15.960 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:15.960 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:08:15.960 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:08:15.960 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:08:15.970 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:15.970 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:08:15.970 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:08:15.970 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:08:15.980 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:08:15.980 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:08:15.980 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:08:15.980 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:08:15.990 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.014009,
17-03-18 01:08:15.990 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28903 150\n [Camera]
17-03-18 01:08:16.190 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:08:16.580 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:08:16.580 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:08:16.580 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:16.580 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:08:16.580 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:08:16.580 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:16.590 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:16.590 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:08:16.590 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:16.590 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:08:16.770 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28903 775
17-03-18 01:08:16.920 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:08:16.980 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:08:16.980 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:08:16.980 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:16.980 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:08:16.980 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:08:16.980 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:16.980 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:16.990 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:16.990 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:08:16.990 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:08:17.110 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:08:17.110 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:08:17.110 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:17.110 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:17.110 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1457022352, 0x0, 391868352) start.
17-03-18 01:08:17.110 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:08:17.110 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:08:17.110 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:17.110 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:17.110 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:08:17.230 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:08:17.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:08:17.300 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:08:17.300 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:08:17.300 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28903 150' command took 3 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-18 01:08:17.300 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:08:17.300 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73876953125, Z-Position -0.131507905349941. ------
17-03-18 01:08:17.300 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:17.300 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13831 mm
17-03-18 01:08:17.300 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:08:17.310 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:17.310 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:08:17.310 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:08:17.310 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 30213, sync = True, waitForSettling = False)
17-03-18 01:08:17.310 -07 000000437 INF: Z Motor: Moving to -0.138306 mm, started at -0.131508 mm, distance = -6.80 um
17-03-18 01:08:17.310 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:08:17.310 -07 000000579 INF: Y Motor: Moving to 61.5726 mm, started at 60.7388 mm, delta = 0.8338 mm
17-03-18 01:08:17.320 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:17.320 -07 000000592 INF: FPGA: Recv YRDPOS 124393
17-03-18 01:08:17.330 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:08:17.330 -07 000000579 INF: Y Motor: Encoder = 124393 = motor step 97182.0 = 60.7388 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:17.330 -07 000000579 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:08:17.330 -07 000000579 INF: Y Motor: Moving 1334 steps-8
17-03-18 01:08:17.330 -07 000000437 INF: FPGA: Xmit ZDACW 30213\n [Z Motor]
17-03-18 01:08:17.330 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:08:17.340 -07 000000437 INF: FPGA: 'ZDACW 30213' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:08:17.340 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:17.340 -07 000000444 INF: FPGA: Recv ZDACR 30213
17-03-18 01:08:17.350 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:08:17.350 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:17.350 -07 000000437 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 01:08:17.510 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:08:17.510 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:08:17.510 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:17.510 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1457022352, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:08:17.510 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:08:17.510 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:17.510 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:08:17.510 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 01:08:17.510 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:08:17.520 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:08:17.520 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 01:08:17.520 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:08:17.720 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:08:17.720 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:08:17.760 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:17.760 -07 000000592 INF: FPGA: Recv YRDPOS 126095
17-03-18 01:08:17.770 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:08:17.770 -07 000000579 INF: Y Motor: Encoder = 126095 = motor step 98511.7 = 61.5698 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:17.770 -07 000000579 INF: Y Motor: Position error before settling (table move) = -6 encoder counts (-0.003 mm)
17-03-18 01:08:17.770 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.834 mm, average velocity = 2.100 mm/sec
17-03-18 01:08:18.720 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:18.720 -07 000000629 INF: FPGA: Recv YRDPOS 126095
17-03-18 01:08:18.730 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:18.730 -07 000000579 INF: Y Motor: Encoder = 126095 = motor step 98511.7 = 61.5698 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:18.730 -07 000000579 INF: Y Motor: After move to 61.572609, error = -0.002785, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:08:18.730 -07 000000579 INF: Y Motor: Position error after settling (table move) = -6 encoder counts (-0.003 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:08:18.730 -07 000000579 INF: Y Motor: Moved to 61.5698 after 1424 ms (table move)
17-03-18 01:08:18.740 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138306 mm (DAC = 30213)
17-03-18 01:08:18.740 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:18.740 -07 000000579 INF: FPGA: Recv ZSGSRD 30811
17-03-18 01:08:18.750 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:08:18.750 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:18.750 -07 000000461 INF: FPGA: Recv ZSGSRD 30827
17-03-18 01:08:18.760 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:18.760 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:18.760 -07 000000579 INF: FPGA: Recv ZSGSRD 30822
17-03-18 01:08:18.770 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:18.770 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:18.770 -07 000000461 INF: FPGA: Recv ZSGSRD 30821
17-03-18 01:08:18.780 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:18.780 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:18.780 -07 000000461 INF: FPGA: Recv ZSGSRD 30819
17-03-18 01:08:18.790 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:18.790 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:18.790 -07 000000461 INF: FPGA: Recv ZSGSRD 30813
17-03-18 01:08:18.800 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:18.800 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:18.800 -07 000000444 INF: FPGA: Recv ZSGSRD 30815
17-03-18 01:08:18.810 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:18.810 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:18.810 -07 000000444 INF: FPGA: Recv ZSGSRD 30822
17-03-18 01:08:18.820 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:18.820 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:18.820 -07 000000444 INF: FPGA: Recv ZSGSRD 30824
17-03-18 01:08:18.830 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:18.830 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:18.830 -07 000000444 INF: FPGA: Recv ZSGSRD 30814
17-03-18 01:08:18.840 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:18.840 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:18.840 -07 000000444 INF: FPGA: Recv ZPIEZORD 27332
17-03-18 01:08:18.850 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:18.850 -07 000000625 INF: Z Motor: Piezo is near 38.4 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.610 V. Piezo Error = -7.7 V.
17-03-18 01:08:18.850 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30819 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30820 (-137.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30811 (-137.5 uncal um), Max = 30827 (-137.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:08:18.850 -07 000000625 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30819, posNoise = 8, negNoise = 8
17-03-18 01:08:18.850 -07 000000625 INF: Z Motor: After move to -0.138306, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:18.850 -07 000000625 INF: Z Motor: Settle wait time = 1428 ms, measure time = 109 ms (allowed 150 ms), total time = 1537 ms
17-03-18 01:08:18.850 -07 000000625 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:08:18.900 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-18 01:08:18.900 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:08:18.900 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:18.900 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:18.900 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:18.900 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:18.910 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:08:18.910 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:18.910 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:18.910 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:08:18.910 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:08:18.910 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:08:18.920 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:08:18.920 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:08:18.930 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:18.970 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:08:19.270 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:08:19.270 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:08:19.270 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:08:19.270 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 01:08:19.310 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:08:19.310 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:19.310 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:08:19.400 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:08:19.400 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:19.400 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:08:19.400 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:08:19.510 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:19.510 -07 000000625 INF: Autofocus start
17-03-18 01:08:19.510 -07 000000625 INF: MeasureProfile start
17-03-18 01:08:19.650 -07 000000625 INF: MeasureProfile done
17-03-18 01:08:19.650 -07 000000625 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 01:08:19.650 -07 000000625 INF: Autofocus finished
17-03-18 01:08:19.650 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:19.650 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 15 ms to get response, and 142 ms overall
17-03-18 01:08:19.650 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:08:19.850 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:08:19.850 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-18 01:08:19.860 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56982421875, Z-position -0.138311146008066. ----------
17-03-18 01:08:19.860 -07 000000610 INF: Cycle	83	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:08:19.860 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28691, sync = True, waitForSettling = True)
17-03-18 01:08:19.860 -07 000000610 INF: Z Motor: Moving to -0.131339 mm, started at -0.138311 mm, distance = 6.97 um
17-03-18 01:08:19.860 -07 000000610 INF: FPGA: Xmit ZDACW 28691\n [Z Motor]
17-03-18 01:08:19.870 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:08:19.870 -07 000000610 INF: FPGA: 'ZDACW 28691' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:08:19.870 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:19.870 -07 000000625 INF: FPGA: Recv ZDACR 28691
17-03-18 01:08:19.880 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:08:19.880 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:20.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:20.030 -07 000000581 INF: FPGA: Recv ZSGSRD 29734
17-03-18 01:08:20.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:20.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:20.040 -07 000000625 INF: FPGA: Recv ZSGSRD 29737
17-03-18 01:08:20.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:20.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:20.050 -07 000000581 INF: FPGA: Recv ZSGSRD 29731
17-03-18 01:08:20.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:20.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:20.060 -07 000000629 INF: FPGA: Recv ZSGSRD 29734
17-03-18 01:08:20.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:20.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:20.070 -07 000000444 INF: FPGA: Recv ZSGSRD 29736
17-03-18 01:08:20.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:20.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:20.080 -07 000000629 INF: FPGA: Recv ZSGSRD 29735
17-03-18 01:08:20.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:20.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:20.090 -07 000000444 INF: FPGA: Recv ZSGSRD 29735
17-03-18 01:08:20.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:20.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:20.100 -07 000000444 INF: FPGA: Recv ZSGSRD 29733
17-03-18 01:08:20.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:20.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:20.110 -07 000000629 INF: FPGA: Recv ZSGSRD 29730
17-03-18 01:08:20.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:20.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:20.120 -07 000000629 INF: FPGA: Recv ZSGSRD 29734
17-03-18 01:08:20.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:20.130 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:20.130 -07 000000629 INF: FPGA: Recv ZPIEZORD 25942
17-03-18 01:08:20.140 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:20.140 -07 000000610 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -8.4 V.
17-03-18 01:08:20.140 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29734 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29734 (-130.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29730 (-130.5 uncal um), Max = 29737 (-130.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:08:20.140 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29734, posNoise = 3, negNoise = 4
17-03-18 01:08:20.140 -07 000000610 INF: Z Motor: After move to -0.131339, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:20.140 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:08:20.140 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:20.140 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:20.140 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:20.140 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:20.140 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:08:20.140 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:20.140 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:08:20.140 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:08:20.140 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:08:20.140 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:08:20.140 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:08:20.140 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:08:20.150 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:08:20.150 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:08:20.150 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:08:20.150 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:08:20.150 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:08:20.150 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:08:20.160 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:08:20.160 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:08:20.160 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28868 150\n [Camera]
17-03-18 01:08:20.360 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:08:20.750 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:08:20.750 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:08:20.750 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:20.750 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:20.750 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:08:20.750 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:08:20.750 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:08:20.750 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:20.750 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:20.750 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:08:20.940 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28868 775
17-03-18 01:08:21.090 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:08:21.150 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:08:21.150 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:08:21.150 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:21.150 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:08:21.150 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:08:21.150 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:21.150 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:21.150 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:08:21.150 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:21.160 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:08:21.280 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:08:21.280 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:08:21.280 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:21.280 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:08:21.280 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:08:21.280 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:21.280 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:21.280 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:08:21.280 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:21.280 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:08:21.360 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.014009,
17-03-18 01:08:21.470 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:08:21.470 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:08:21.470 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28868 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-18 01:08:21.470 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:08:21.470 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56982421875, Z-Position -0.131340875834255. ------
17-03-18 01:08:21.480 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:21.480 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13815 mm
17-03-18 01:08:21.480 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:08:21.480 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:08:21.480 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:21.480 -07 000000487 INF: Y Motor: Moving to 62.4026 mm, started at 61.5698 mm, delta = 0.8328 mm
17-03-18 01:08:21.480 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 30179, sync = True, waitForSettling = False)
17-03-18 01:08:21.480 -07 000000474 INF: Z Motor: Moving to -0.138151 mm, started at -0.131341 mm, distance = -6.81 um
17-03-18 01:08:21.490 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:21.490 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:21.490 -07 000000581 INF: FPGA: Recv YRDPOS 126095
17-03-18 01:08:21.500 -07 000000474 INF: FPGA: Xmit ZDACW 30179\n [Z Motor]
17-03-18 01:08:21.610 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:08:21.610 -07 000000487 INF: Y Motor: Encoder = 126095 = motor step 98511.7 = 61.5698 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:21.610 -07 000000487 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:08:21.610 -07 000000487 INF: Y Motor: Moving 1332 steps-6
17-03-18 01:08:21.620 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:08:21.630 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:08:21.670 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 01:08:21.670 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:08:21.670 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:21.670 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:21.670 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:08:21.670 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:08:21.670 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:21.680 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:21.680 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:08:21.680 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:08:22.710 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:08:22.710 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:08:22.710 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:08:22.710 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:08:22.710 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1070 ms to get response, and 1100 ms overall
17-03-18 01:08:22.710 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:08:22.710 -07 000000474 INF: FPGA: 'ZDACW 30179' command took 110 ms to send, 1090 ms to get response, and 1227 ms overall
17-03-18 01:08:22.710 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:22.710 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1080 ms to get response, and 1220 ms overall
17-03-18 01:08:22.710 -07 000000629 INF: FPGA: Recv ZDACR 30179
17-03-18 01:08:22.720 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:08:22.720 -07 000000474 INF: Z Motor: MoveAbsStepped took 1236 ms (did NOT wait for settling yet))
17-03-18 01:08:22.740 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:22.750 -07 000000461 INF: FPGA: Recv YRDPOS 127797
17-03-18 01:08:22.750 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:08:22.750 -07 000000487 INF: Y Motor: Encoder = 127797 = motor step 99841.4 = 62.4009 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:22.750 -07 000000487 INF: Y Motor: Position error before settling (table move) = -4 encoder counts (-0.002 mm)
17-03-18 01:08:22.750 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1100 ms, distance = 0.833 mm, average velocity = 0.757 mm/sec
17-03-18 01:08:23.700 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:23.700 -07 000000629 INF: FPGA: Recv YRDPOS 127797
17-03-18 01:08:23.710 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:23.710 -07 000000487 INF: Y Motor: Encoder = 127797 = motor step 99841.4 = 62.4009 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:23.710 -07 000000487 INF: Y Motor: After move to 62.402607, error = -0.001728, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:08:23.710 -07 000000487 INF: Y Motor: Position error after settling (table move) = -4 encoder counts (-0.002 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:08:23.710 -07 000000487 INF: Y Motor: Moved to 62.4009 after 2231 ms (table move)
17-03-18 01:08:23.710 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138151 mm (DAC = 30179)
17-03-18 01:08:23.710 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:23.720 -07 000000487 INF: FPGA: Recv ZSGSRD 30799
17-03-18 01:08:23.720 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:08:23.720 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:23.720 -07 000000474 INF: FPGA: Recv ZSGSRD 30804
17-03-18 01:08:23.730 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:08:23.730 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:23.730 -07 000000629 INF: FPGA: Recv ZSGSRD 30796
17-03-18 01:08:23.740 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:23.740 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:23.740 -07 000000461 INF: FPGA: Recv ZSGSRD 30793
17-03-18 01:08:23.750 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:23.750 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:23.750 -07 000000487 INF: FPGA: Recv ZSGSRD 30795
17-03-18 01:08:23.760 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:23.760 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:23.760 -07 000000461 INF: FPGA: Recv ZSGSRD 30795
17-03-18 01:08:23.770 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:23.770 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:23.770 -07 000000474 INF: FPGA: Recv ZSGSRD 30802
17-03-18 01:08:23.780 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:23.780 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:23.780 -07 000000461 INF: FPGA: Recv ZSGSRD 30797
17-03-18 01:08:23.790 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:23.790 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:23.790 -07 000000461 INF: FPGA: Recv ZSGSRD 30794
17-03-18 01:08:23.800 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:23.800 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:23.800 -07 000000461 INF: FPGA: Recv ZSGSRD 30797
17-03-18 01:08:23.810 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:23.810 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:23.810 -07 000000487 INF: FPGA: Recv ZPIEZORD 27307
17-03-18 01:08:23.820 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:23.820 -07 000000462 INF: Z Motor: Piezo is near 38.3 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.605 V. Piezo Error = -7.7 V.
17-03-18 01:08:23.820 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30797 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30796 (-137.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30793 (-137.3 uncal um), Max = 30804 (-137.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:08:23.820 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30797, posNoise = 7, negNoise = 4
17-03-18 01:08:23.820 -07 000000462 INF: Z Motor: After move to -0.138151, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:23.820 -07 000000462 INF: Z Motor: Settle wait time = 2234 ms, measure time = 104 ms (allowed 150 ms), total time = 2338 ms
17-03-18 01:08:23.820 -07 000000462 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 01:08:23.870 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2389 ms
17-03-18 01:08:23.870 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:08:23.870 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:23.870 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:23.870 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:23.870 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:08:23.870 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:23.870 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:23.880 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:23.880 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:08:23.880 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:23.880 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:08:23.890 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:08:23.890 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:08:23.890 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:23.930 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:08:24.230 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:08:24.230 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:08:24.230 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:08:24.240 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 01:08:24.270 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:08:24.270 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:24.270 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 01:08:24.360 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:08:24.360 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:24.360 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:08:24.360 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:08:24.470 -07 000000461 INF: Autofocus start
17-03-18 01:08:24.470 -07 000000461 INF: MeasureProfile start
17-03-18 01:08:24.470 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:24.470 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:24.480 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:08:24.480 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:08:24.480 -07 000000461 INF: MeasureProfile done
17-03-18 01:08:24.480 -07 000000461 INF: X=-80  Z correction [um]=-0.3928285
17-03-18 01:08:24.480 -07 000000461 INF: Autofocus finished
17-03-18 01:08:24.680 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:08:24.680 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:08:24.680 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.40087890625, Z-position -0.138169813340947. ----------
17-03-18 01:08:24.680 -07 000000610 INF: Cycle	83	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:08:24.690 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28605, sync = True, waitForSettling = True)
17-03-18 01:08:24.690 -07 000000610 INF: Z Motor: Moving to -0.130945 mm, started at -0.138170 mm, distance = 7.22 um
17-03-18 01:08:24.690 -07 000000610 INF: FPGA: Xmit ZDACW 28605\n [Z Motor]
17-03-18 01:08:24.690 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:08:24.700 -07 000000610 INF: FPGA: 'ZDACW 28605' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:08:24.700 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:24.700 -07 000000629 INF: FPGA: Recv ZDACR 28605
17-03-18 01:08:24.710 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:24.710 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:24.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:24.860 -07 000000487 INF: FPGA: Recv ZSGSRD 29673
17-03-18 01:08:24.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:24.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:24.870 -07 000000592 INF: FPGA: Recv ZSGSRD 29682
17-03-18 01:08:24.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:24.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:24.880 -07 000000462 INF: FPGA: Recv ZSGSRD 29673
17-03-18 01:08:24.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:24.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:24.890 -07 000000625 INF: FPGA: Recv ZSGSRD 29675
17-03-18 01:08:24.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:24.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:24.900 -07 000000461 INF: FPGA: Recv ZSGSRD 29675
17-03-18 01:08:24.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:24.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:24.910 -07 000000625 INF: FPGA: Recv ZSGSRD 29668
17-03-18 01:08:24.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:24.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:24.920 -07 000000462 INF: FPGA: Recv ZSGSRD 29676
17-03-18 01:08:24.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:24.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:24.930 -07 000000592 INF: FPGA: Recv ZSGSRD 29671
17-03-18 01:08:24.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:24.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:24.940 -07 000000487 INF: FPGA: Recv ZSGSRD 29673
17-03-18 01:08:24.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:24.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:24.950 -07 000000629 INF: FPGA: Recv ZSGSRD 29675
17-03-18 01:08:24.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:24.960 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:24.960 -07 000000461 INF: FPGA: Recv ZPIEZORD 25840
17-03-18 01:08:24.970 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:24.970 -07 000000610 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.365 V. Piezo Error = -8.4 V.
17-03-18 01:08:24.970 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29674 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29674 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29668 (-130.1 uncal um), Max = 29682 (-130.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:08:24.970 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29674, posNoise = 8, negNoise = 6
17-03-18 01:08:24.970 -07 000000610 INF: Z Motor: After move to -0.130945, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:24.970 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:08:24.970 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:24.970 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:24.970 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:24.970 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:24.970 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:08:24.970 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:24.970 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:08:24.970 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:08:24.970 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:24.970 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:08:24.970 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:08:24.970 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:08:24.980 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:08:24.980 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:08:24.980 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:08:24.980 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:08:24.990 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:08:24.990 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:08:24.990 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:08:24.990 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:08:24.990 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28782 150\n [Camera]
17-03-18 01:08:25.190 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:08:25.590 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:08:25.590 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:08:25.590 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:25.590 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:08:25.590 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:08:25.590 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:25.600 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:25.600 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:08:25.600 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:25.600 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:08:25.780 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28782 775
17-03-18 01:08:25.930 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:08:25.990 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:08:25.990 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:08:25.990 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:26.000 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:08:26.000 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:08:26.000 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:26.000 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:08:26.000 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:08:26.000 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:26.010 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:08:26.120 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:08:26.120 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:08:26.120 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:26.120 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:26.120 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:08:26.120 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:08:26.120 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:08:26.120 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:26.120 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:26.120 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:08:26.310 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:08:26.310 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:08:26.310 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28782 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:08:26.310 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:08:26.310 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.40087890625, Z-Position -0.13095542310575. ------
17-03-18 01:08:26.310 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:26.310 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13776 mm
17-03-18 01:08:26.310 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:08:26.320 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:08:26.320 -07 000000625 INF: Y Motor: Moving to 63.2326 mm, started at 62.4009 mm, delta = 0.8317 mm
17-03-18 01:08:26.320 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:26.320 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 30093, sync = True, waitForSettling = False)
17-03-18 01:08:26.320 -07 000000581 INF: Z Motor: Moving to -0.137757 mm, started at -0.130955 mm, distance = -6.80 um
17-03-18 01:08:26.320 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:26.320 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 01:08:26.320 -07 000000474 INF: FPGA: Recv YRDPOS 127797
17-03-18 01:08:26.330 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:26.330 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:08:26.330 -07 000000625 INF: Y Motor: Encoder = 127797 = motor step 99841.4 = 62.4009 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:26.330 -07 000000625 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:08:26.330 -07 000000625 INF: Y Motor: Moving 1331 steps-4
17-03-18 01:08:26.340 -07 000000581 INF: FPGA: Xmit ZDACW 30093\n [Z Motor]
17-03-18 01:08:26.340 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:08:26.350 -07 000000581 INF: FPGA: 'ZDACW 30093' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:08:26.350 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:08:26.360 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:26.360 -07 000000444 INF: FPGA: Recv ZDACR 30093
17-03-18 01:08:26.370 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:08:26.370 -07 000000581 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 01:08:26.520 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:08:26.520 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:08:26.520 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:26.520 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:08:26.520 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:08:26.520 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:26.530 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:26.530 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:08:26.530 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:08:26.530 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:08:26.530 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:08:26.530 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 197 ms to get response, and 215 ms overall
17-03-18 01:08:26.720 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.033041,
17-03-18 01:08:26.720 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 01:08:26.720 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:08:26.760 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:26.760 -07 000000487 INF: FPGA: Recv YRDPOS 129495
17-03-18 01:08:26.770 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:08:26.770 -07 000000625 INF: Y Motor: Encoder = 129495 = motor step 101168.0 = 63.2300 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:26.770 -07 000000625 INF: Y Motor: Position error before settling (table move) = -5 encoder counts (-0.002 mm)
17-03-18 01:08:26.770 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.832 mm, average velocity = 2.111 mm/sec
17-03-18 01:08:27.230 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:08:27.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:08:27.720 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:27.720 -07 000000487 INF: FPGA: Recv YRDPOS 129495
17-03-18 01:08:27.730 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:27.730 -07 000000625 INF: Y Motor: Encoder = 129495 = motor step 101168.0 = 63.2300 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:27.730 -07 000000625 INF: Y Motor: After move to 63.232609, error = -0.002628, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:08:27.730 -07 000000625 INF: Y Motor: Position error after settling (table move) = -5 encoder counts (-0.002 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:08:27.730 -07 000000625 INF: Y Motor: Moved to 63.2300 after 1414 ms (table move)
17-03-18 01:08:27.730 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137757 mm (DAC = 30093)
17-03-18 01:08:27.730 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:27.740 -07 000000590 INF: FPGA: Recv ZSGSRD 30741
17-03-18 01:08:27.740 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:08:27.740 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:27.740 -07 000000487 INF: FPGA: Recv ZSGSRD 30734
17-03-18 01:08:27.750 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:27.750 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:27.750 -07 000000625 INF: FPGA: Recv ZSGSRD 30737
17-03-18 01:08:27.760 -07 000000592 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:27.760 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:27.760 -07 000000487 INF: FPGA: Recv ZSGSRD 30733
17-03-18 01:08:27.770 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:27.770 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:27.770 -07 000000487 INF: FPGA: Recv ZSGSRD 30735
17-03-18 01:08:27.780 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:27.780 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:27.780 -07 000000625 INF: FPGA: Recv ZSGSRD 30729
17-03-18 01:08:27.790 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:27.790 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:27.790 -07 000000625 INF: FPGA: Recv ZSGSRD 30731
17-03-18 01:08:27.800 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:27.800 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:27.800 -07 000000625 INF: FPGA: Recv ZSGSRD 30724
17-03-18 01:08:27.810 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:27.810 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:27.810 -07 000000625 INF: FPGA: Recv ZSGSRD 30737
17-03-18 01:08:27.820 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:27.820 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:27.820 -07 000000625 INF: FPGA: Recv ZSGSRD 30736
17-03-18 01:08:27.830 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:27.830 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:27.830 -07 000000590 INF: FPGA: Recv ZPIEZORD 27213
17-03-18 01:08:27.840 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:27.840 -07 000000592 INF: Z Motor: Piezo is near 38.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -7.8 V.
17-03-18 01:08:27.840 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30734 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30734 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30724 (-136.9 uncal um), Max = 30741 (-137.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:08:27.840 -07 000000592 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30734, posNoise = 7, negNoise = 10
17-03-18 01:08:27.840 -07 000000592 INF: Z Motor: After move to -0.137757, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:27.840 -07 000000592 INF: Z Motor: Settle wait time = 1417 ms, measure time = 103 ms (allowed 150 ms), total time = 1520 ms
17-03-18 01:08:27.840 -07 000000592 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 01:08:27.890 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1572 ms
17-03-18 01:08:27.890 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:08:27.890 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:27.890 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:27.890 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:27.890 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:27.890 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:08:27.890 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:27.890 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:08:27.890 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:08:27.900 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:08:27.900 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:08:27.910 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:08:27.910 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 01:08:27.910 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:27.960 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:08:28.260 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:08:28.260 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:08:28.260 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:08:28.260 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1184141528, 0x0, 559484976) start.
17-03-18 01:08:28.300 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:08:28.300 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:28.300 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 01:08:28.390 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1184141528, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:08:28.390 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:28.390 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:08:28.390 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:08:28.400 -07 000000487 INF: Autofocus start
17-03-18 01:08:28.400 -07 000000487 INF: MeasureProfile start
17-03-18 01:08:28.400 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:28.400 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:28.410 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:08:28.410 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:08:28.410 -07 000000487 INF: MeasureProfile done
17-03-18 01:08:28.410 -07 000000487 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 01:08:28.410 -07 000000487 INF: Autofocus finished
17-03-18 01:08:28.610 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:08:28.610 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:08:28.610 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22998046875, Z-position -0.137765087976016. ----------
17-03-18 01:08:28.610 -07 000000610 INF: Cycle	83	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:08:28.610 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28588, sync = True, waitForSettling = True)
17-03-18 01:08:28.610 -07 000000610 INF: Z Motor: Moving to -0.130867 mm, started at -0.137765 mm, distance = 6.90 um
17-03-18 01:08:28.620 -07 000000610 INF: FPGA: Xmit ZDACW 28588\n [Z Motor]
17-03-18 01:08:28.620 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:08:28.630 -07 000000610 INF: FPGA: 'ZDACW 28588' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:28.630 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:28.630 -07 000000581 INF: FPGA: Recv ZDACR 28588
17-03-18 01:08:28.640 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:28.640 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:28.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:28.790 -07 000000474 INF: FPGA: Recv ZSGSRD 29661
17-03-18 01:08:28.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:28.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:28.800 -07 000000581 INF: FPGA: Recv ZSGSRD 29664
17-03-18 01:08:28.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:28.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:28.810 -07 000000592 INF: FPGA: Recv ZSGSRD 29658
17-03-18 01:08:28.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:28.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:28.820 -07 000000437 INF: FPGA: Recv ZSGSRD 29662
17-03-18 01:08:28.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:28.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:28.830 -07 000000585 INF: FPGA: Recv ZSGSRD 29659
17-03-18 01:08:28.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:28.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:28.840 -07 000000592 INF: FPGA: Recv ZSGSRD 29662
17-03-18 01:08:28.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:28.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:28.850 -07 000000444 INF: FPGA: Recv ZSGSRD 29666
17-03-18 01:08:28.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:28.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:28.860 -07 000000625 INF: FPGA: Recv ZSGSRD 29662
17-03-18 01:08:28.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:28.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:28.870 -07 000000444 INF: FPGA: Recv ZSGSRD 29662
17-03-18 01:08:28.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:28.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:28.880 -07 000000625 INF: FPGA: Recv ZSGSRD 29658
17-03-18 01:08:28.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:28.890 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:28.890 -07 000000444 INF: FPGA: Recv ZPIEZORD 25834
17-03-18 01:08:28.900 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:28.900 -07 000000610 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -8.4 V.
17-03-18 01:08:28.900 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29661 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29662 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29658 (-130.1 uncal um), Max = 29666 (-130.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:08:28.900 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29661, posNoise = 5, negNoise = 3
17-03-18 01:08:28.900 -07 000000610 INF: Z Motor: After move to -0.130867, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:28.900 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:08:28.900 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:28.900 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:28.900 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:28.900 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:28.900 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:08:28.900 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:28.900 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:08:28.900 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:08:28.900 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:08:28.900 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:08:28.900 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:08:28.900 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:08:28.900 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:28.900 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:08:28.910 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:08:28.910 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:08:28.920 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:08:28.920 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:08:28.920 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:08:28.920 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:08:28.920 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28764 150\n [Camera]
17-03-18 01:08:29.120 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:08:29.510 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:08:29.510 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:08:29.510 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:29.510 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:29.510 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:08:29.510 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:08:29.520 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:08:29.520 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:29.520 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:29.520 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:08:29.700 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28764 775
17-03-18 01:08:29.860 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 01:08:29.910 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:08:29.910 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:08:29.910 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:29.910 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:29.910 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:08:29.910 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:08:29.910 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:08:29.910 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:29.920 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:29.920 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:08:30.040 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:08:30.040 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:08:30.040 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:30.040 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:30.040 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:08:30.050 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:08:30.050 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:08:30.050 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:30.050 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:30.050 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:08:30.230 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:08:30.240 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:08:30.240 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28764 150' command took 2 ms to send, 1310 ms to get response, and 1313 ms overall
17-03-18 01:08:30.240 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:08:30.240 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22998046875, Z-Position -0.130871908347907. ------
17-03-18 01:08:30.240 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:30.240 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13767 mm
17-03-18 01:08:30.240 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:08:30.240 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:08:30.240 -07 000000625 INF: Y Motor: Moving to 64.0626 mm, started at 63.2300 mm, delta = 0.8326 mm
17-03-18 01:08:30.240 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 30075, sync = True, waitForSettling = False)
17-03-18 01:08:30.240 -07 000000444 INF: Z Motor: Moving to -0.137675 mm, started at -0.130872 mm, distance = -6.80 um
17-03-18 01:08:30.250 -07 000000444 INF: FPGA: Xmit ZDACW 30075\n [Z Motor]
17-03-18 01:08:30.260 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:30.450 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 01:08:30.450 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:08:30.450 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:30.450 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 01:08:30.450 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:08:30.450 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:30.460 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:30.460 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:08:30.460 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 01:08:30.460 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:08:31.220 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:31.220 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:08:31.220 -07 000000592 INF: FPGA: Recv YRDPOS 129495
17-03-18 01:08:31.220 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 950 ms to get response, and 973 ms overall
17-03-18 01:08:31.220 -07 000000625 INF: Y Motor: Encoder = 129495 = motor step 101168.0 = 63.2300 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:31.220 -07 000000625 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:08:31.220 -07 000000625 INF: Y Motor: Moving 1332 steps-5
17-03-18 01:08:31.220 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:08:31.220 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 970 ms to get response, and 976 ms overall
17-03-18 01:08:31.220 -07 000000444 INF: FPGA: 'ZDACW 30075' command took 0 ms to send, 960 ms to get response, and 973 ms overall
17-03-18 01:08:31.230 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:31.230 -07 000000581 INF: FPGA: Recv ZDACR 30075
17-03-18 01:08:31.240 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:08:31.240 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:08:31.240 -07 000000444 INF: Z Motor: MoveAbsStepped took 992 ms (did NOT wait for settling yet))
17-03-18 01:08:31.440 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:08:31.440 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 01:08:31.600 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 01:08:31.600 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-18 01:08:31.630 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:31.630 -07 000000592 INF: FPGA: Recv YRDPOS 131200
17-03-18 01:08:31.640 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:08:31.640 -07 000000625 INF: Y Motor: Encoder = 131200 = motor step 102500.0 = 64.0625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:31.640 -07 000000625 INF: Y Motor: Position error before settling (table move) = 0 encoder counts (0.000 mm)
17-03-18 01:08:31.640 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.833 mm, average velocity = 2.203 mm/sec
17-03-18 01:08:32.080 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.012614,
17-03-18 01:08:32.230 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:08:32.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:08:32.590 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:32.590 -07 000000590 INF: FPGA: Recv YRDPOS 131200
17-03-18 01:08:32.600 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:32.600 -07 000000625 INF: Y Motor: Encoder = 131200 = motor step 102500.0 = 64.0625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:32.600 -07 000000625 INF: Y Motor: After move to 64.062607, error = -0.000107, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:08:32.600 -07 000000625 INF: Y Motor: Position error after settling (table move) = 0 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:08:32.600 -07 000000625 INF: Y Motor: Moved to 64.0625 after 2355 ms (table move)
17-03-18 01:08:32.600 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137675 mm (DAC = 30075)
17-03-18 01:08:32.600 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:32.600 -07 000000444 INF: FPGA: Recv ZSGSRD 30719
17-03-18 01:08:32.610 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:08:32.610 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:32.610 -07 000000581 INF: FPGA: Recv ZSGSRD 30726
17-03-18 01:08:32.620 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:32.620 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:32.620 -07 000000437 INF: FPGA: Recv ZSGSRD 30723
17-03-18 01:08:32.630 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:32.630 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:32.630 -07 000000444 INF: FPGA: Recv ZSGSRD 30723
17-03-18 01:08:32.640 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:32.640 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:32.640 -07 000000581 INF: FPGA: Recv ZSGSRD 30721
17-03-18 01:08:32.650 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:32.650 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:32.650 -07 000000437 INF: FPGA: Recv ZSGSRD 30727
17-03-18 01:08:32.660 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:32.660 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:32.660 -07 000000625 INF: FPGA: Recv ZSGSRD 30719
17-03-18 01:08:32.670 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:32.670 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:32.670 -07 000000437 INF: FPGA: Recv ZSGSRD 30718
17-03-18 01:08:32.680 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:32.680 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:32.680 -07 000000581 INF: FPGA: Recv ZSGSRD 30722
17-03-18 01:08:32.690 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:32.690 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:32.690 -07 000000590 INF: FPGA: Recv ZSGSRD 30726
17-03-18 01:08:32.700 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:32.700 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:32.700 -07 000000592 INF: FPGA: Recv ZPIEZORD 27240
17-03-18 01:08:32.710 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:32.710 -07 000000629 INF: Z Motor: Piezo is near 38.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.589 V. Piezo Error = -7.7 V.
17-03-18 01:08:32.710 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30722 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30722 (-136.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30718 (-136.9 uncal um), Max = 30727 (-136.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:08:32.710 -07 000000629 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30722, posNoise = 5, negNoise = 4
17-03-18 01:08:32.710 -07 000000629 INF: Z Motor: After move to -0.137675, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:32.710 -07 000000629 INF: Z Motor: Settle wait time = 2358 ms, measure time = 104 ms (allowed 150 ms), total time = 2462 ms
17-03-18 01:08:32.710 -07 000000629 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 01:08:32.760 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2514 ms
17-03-18 01:08:32.760 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:08:32.760 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:32.760 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:32.760 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:08:32.760 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:32.760 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:32.760 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:32.770 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 01:08:32.770 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:08:32.770 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:32.770 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:08:32.780 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:08:32.780 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:08:32.780 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:32.820 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:08:33.120 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:08:33.120 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:08:33.120 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:08:33.120 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 01:08:33.160 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:08:33.160 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:33.160 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:08:33.240 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:08:33.240 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:33.240 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:08:33.240 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 01:08:33.260 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:33.260 -07 000000592 INF: Autofocus start
17-03-18 01:08:33.260 -07 000000592 INF: MeasureProfile start
17-03-18 01:08:33.260 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:33.270 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:08:33.270 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:08:33.270 -07 000000592 INF: MeasureProfile done
17-03-18 01:08:33.270 -07 000000592 INF: X=-72  Z correction [um]=-0.3538859
17-03-18 01:08:33.270 -07 000000592 INF: Autofocus finished
17-03-18 01:08:33.470 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:08:33.470 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:08:33.470 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0625, Z-position -0.137687997430315. ----------
17-03-18 01:08:33.470 -07 000000610 INF: Cycle	83	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:08:33.480 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28510, sync = True, waitForSettling = True)
17-03-18 01:08:33.480 -07 000000610 INF: Z Motor: Moving to -0.130510 mm, started at -0.137688 mm, distance = 7.18 um
17-03-18 01:08:33.480 -07 000000610 INF: FPGA: Xmit ZDACW 28510\n [Z Motor]
17-03-18 01:08:33.480 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:08:33.490 -07 000000610 INF: FPGA: 'ZDACW 28510' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:08:33.490 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:33.490 -07 000000625 INF: FPGA: Recv ZDACR 28510
17-03-18 01:08:33.500 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:33.500 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:33.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:33.650 -07 000000437 INF: FPGA: Recv ZSGSRD 29607
17-03-18 01:08:33.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:33.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:33.660 -07 000000625 INF: FPGA: Recv ZSGSRD 29608
17-03-18 01:08:33.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:33.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:33.670 -07 000000585 INF: FPGA: Recv ZSGSRD 29606
17-03-18 01:08:33.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:33.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:33.680 -07 000000592 INF: FPGA: Recv ZSGSRD 29608
17-03-18 01:08:33.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:33.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:33.690 -07 000000437 INF: FPGA: Recv ZSGSRD 29608
17-03-18 01:08:33.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:33.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:33.700 -07 000000625 INF: FPGA: Recv ZSGSRD 29604
17-03-18 01:08:33.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:33.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:33.710 -07 000000629 INF: FPGA: Recv ZSGSRD 29608
17-03-18 01:08:33.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:33.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:33.720 -07 000000444 INF: FPGA: Recv ZSGSRD 29606
17-03-18 01:08:33.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:33.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:33.730 -07 000000437 INF: FPGA: Recv ZSGSRD 29605
17-03-18 01:08:33.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:33.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:33.740 -07 000000625 INF: FPGA: Recv ZSGSRD 29606
17-03-18 01:08:33.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:33.750 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:33.750 -07 000000585 INF: FPGA: Recv ZPIEZORD 25789
17-03-18 01:08:33.760 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:33.760 -07 000000610 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.350 V. Piezo Error = -8.4 V.
17-03-18 01:08:33.760 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29607 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29606 (-129.7 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 29604 (-129.7 uncal um), Max = 29608 (-129.8 uncal um), Pos Noise = 1 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:08:33.760 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29607, posNoise = 1, negNoise = 3
17-03-18 01:08:33.760 -07 000000610 INF: Z Motor: After move to -0.130510, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:33.760 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:08:33.760 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:33.760 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:33.760 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:33.760 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:33.760 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:08:33.760 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:33.760 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:08:33.760 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:08:33.760 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:33.760 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:08:33.760 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:08:33.760 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:08:33.770 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:33.770 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:08:33.770 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:08:33.770 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:08:33.780 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:08:33.780 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:08:33.780 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:08:33.780 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:08:33.780 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28687 150\n [Camera]
17-03-18 01:08:33.980 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:08:34.370 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:08:34.370 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:08:34.370 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:34.370 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:34.370 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:08:34.370 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:08:34.370 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:08:34.370 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:34.370 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:34.370 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 01:08:34.560 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28687 775
17-03-18 01:08:34.720 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:08:34.770 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:08:34.770 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:08:34.770 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:34.770 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:08:34.770 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:08:34.770 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:34.770 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:34.770 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:08:34.780 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:34.780 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:08:34.900 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:08:34.900 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:08:34.900 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:34.900 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:34.900 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:08:34.900 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:08:34.900 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:08:34.900 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:34.900 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:34.900 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 01:08:35.090 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:08:35.090 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:08:35.090 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28687 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-18 01:08:35.090 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:08:35.090 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0625, Z-Position -0.130525000892252. ------
17-03-18 01:08:35.100 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:35.100 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13732 mm
17-03-18 01:08:35.100 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:08:35.100 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 29998, sync = True, waitForSettling = False)
17-03-18 01:08:35.100 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:35.100 -07 000000487 INF: Z Motor: Moving to -0.137322 mm, started at -0.130525 mm, distance = -6.80 um
17-03-18 01:08:35.100 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:08:35.100 -07 000000437 INF: Y Motor: Moving to 64.8926 mm, started at 64.0625 mm, delta = 0.8301 mm
17-03-18 01:08:35.110 -07 000000487 INF: FPGA: Xmit ZDACW 29998\n [Z Motor]
17-03-18 01:08:35.110 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:35.110 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:08:35.120 -07 000000487 INF: FPGA: 'ZDACW 29998' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:08:35.120 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:35.120 -07 000000585 INF: FPGA: Recv YRDPOS 131201
17-03-18 01:08:35.130 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:08:35.130 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:08:35.130 -07 000000437 INF: Y Motor: Encoder = 131201 = motor step 102500.8 = 64.0630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:35.130 -07 000000437 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:08:35.130 -07 000000437 INF: Y Motor: Moving 1327 steps0
17-03-18 01:08:35.140 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:35.140 -07 000000585 INF: FPGA: Recv ZDACR 29998
17-03-18 01:08:35.150 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:08:35.150 -07 000000487 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:08:35.150 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:08:35.290 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 01:08:35.290 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:08:35.290 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:35.290 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:08:35.290 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:08:35.290 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:35.290 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:35.300 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:08:35.300 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:08:35.300 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:08:35.330 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:08:35.330 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:08:35.520 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 01:08:35.520 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:08:35.560 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:35.560 -07 000000462 INF: FPGA: Recv YRDPOS 132884
17-03-18 01:08:35.570 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:08:35.570 -07 000000437 INF: Y Motor: Encoder = 132884 = motor step 103815.6 = 64.8848 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:35.570 -07 000000437 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 01:08:35.570 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.830 mm, average velocity = 2.102 mm/sec
17-03-18 01:08:36.520 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:36.520 -07 000000444 INF: FPGA: Recv YRDPOS 132884
17-03-18 01:08:36.530 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:36.530 -07 000000437 INF: Y Motor: Encoder = 132884 = motor step 103815.6 = 64.8848 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:36.550 -07 000000437 INF: Y Motor: After move to 64.892609, error = -0.007843, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:08:36.550 -07 000000437 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:08:36.550 -07 000000437 INF: Y Motor: Moved to 64.8848 after 1448 ms (table move)
17-03-18 01:08:36.550 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137322 mm (DAC = 29998)
17-03-18 01:08:36.550 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:36.560 -07 000000462 INF: FPGA: Recv ZSGSRD 30675
17-03-18 01:08:36.560 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:08:36.560 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:36.560 -07 000000444 INF: FPGA: Recv ZSGSRD 30661
17-03-18 01:08:36.570 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:08:36.570 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:36.570 -07 000000437 INF: FPGA: Recv ZSGSRD 30663
17-03-18 01:08:36.580 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:36.580 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:36.580 -07 000000437 INF: FPGA: Recv ZSGSRD 30662
17-03-18 01:08:36.590 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:36.590 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:36.590 -07 000000437 INF: FPGA: Recv ZSGSRD 30660
17-03-18 01:08:36.600 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:36.600 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:36.600 -07 000000462 INF: FPGA: Recv ZSGSRD 30667
17-03-18 01:08:36.610 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:36.610 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:36.610 -07 000000437 INF: FPGA: Recv ZSGSRD 30664
17-03-18 01:08:36.620 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:36.620 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:36.620 -07 000000462 INF: FPGA: Recv ZSGSRD 30667
17-03-18 01:08:36.630 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:36.630 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:36.630 -07 000000581 INF: FPGA: Recv ZSGSRD 30669
17-03-18 01:08:36.640 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:36.640 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:36.640 -07 000000581 INF: FPGA: Recv ZSGSRD 30671
17-03-18 01:08:36.650 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:36.650 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:36.650 -07 000000437 INF: FPGA: Recv ZPIEZORD 27169
17-03-18 01:08:36.660 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:36.660 -07 000000474 INF: Z Motor: Piezo is near 38.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -7.7 V.
17-03-18 01:08:36.660 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30666 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30666 (-136.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30660 (-136.5 uncal um), Max = 30675 (-136.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:08:36.660 -07 000000474 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30666, posNoise = 9, negNoise = 6
17-03-18 01:08:36.660 -07 000000474 INF: Z Motor: After move to -0.137322, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:36.660 -07 000000474 INF: Z Motor: Settle wait time = 1455 ms, measure time = 101 ms (allowed 150 ms), total time = 1556 ms
17-03-18 01:08:36.660 -07 000000474 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:08:36.710 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 01:08:36.710 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:08:36.710 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:36.710 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:36.710 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:36.710 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:36.710 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:08:36.710 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:36.710 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:08:36.710 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:08:36.720 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:08:36.720 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:08:36.720 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:08:36.720 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:08:36.730 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:36.770 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:08:37.070 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:08:37.070 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:08:37.070 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:08:37.070 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 01:08:37.110 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:08:37.110 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:37.110 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:08:37.200 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:08:37.200 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:37.200 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:08:37.200 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:08:37.230 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:08:37.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:08:37.310 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:37.310 -07 000000462 INF: Autofocus start
17-03-18 01:08:37.310 -07 000000462 INF: MeasureProfile start
17-03-18 01:08:37.310 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:37.320 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:08:37.320 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:08:37.320 -07 000000462 INF: MeasureProfile done
17-03-18 01:08:37.320 -07 000000462 INF: X=-48  Z correction [um]=-0.2370583
17-03-18 01:08:37.320 -07 000000462 INF: Autofocus finished
17-03-18 01:08:37.440 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.993549,
17-03-18 01:08:37.520 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:08:37.520 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:08:37.520 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.884765625, Z-position -0.137328241550377. ----------
17-03-18 01:08:37.520 -07 000000610 INF: Cycle	83	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:08:37.530 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28459, sync = True, waitForSettling = True)
17-03-18 01:08:37.530 -07 000000610 INF: Z Motor: Moving to -0.130277 mm, started at -0.137328 mm, distance = 7.05 um
17-03-18 01:08:37.530 -07 000000610 INF: FPGA: Xmit ZDACW 28459\n [Z Motor]
17-03-18 01:08:37.530 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:08:37.540 -07 000000610 INF: FPGA: 'ZDACW 28459' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:37.540 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:37.540 -07 000000581 INF: FPGA: Recv ZDACR 28459
17-03-18 01:08:37.550 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:37.550 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:37.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:37.700 -07 000000437 INF: FPGA: Recv ZSGSRD 29570
17-03-18 01:08:37.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:37.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:37.710 -07 000000581 INF: FPGA: Recv ZSGSRD 29574
17-03-18 01:08:37.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:37.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:37.720 -07 000000444 INF: FPGA: Recv ZSGSRD 29565
17-03-18 01:08:37.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:37.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:37.730 -07 000000462 INF: FPGA: Recv ZSGSRD 29568
17-03-18 01:08:37.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:37.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:37.740 -07 000000474 INF: FPGA: Recv ZSGSRD 29573
17-03-18 01:08:37.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:37.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:37.750 -07 000000444 INF: FPGA: Recv ZSGSRD 29569
17-03-18 01:08:37.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:37.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:37.760 -07 000000474 INF: FPGA: Recv ZSGSRD 29570
17-03-18 01:08:37.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:37.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:37.770 -07 000000579 INF: FPGA: Recv ZSGSRD 29573
17-03-18 01:08:37.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:37.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:37.780 -07 000000444 INF: FPGA: Recv ZSGSRD 29572
17-03-18 01:08:37.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:37.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:37.790 -07 000000474 INF: FPGA: Recv ZSGSRD 29570
17-03-18 01:08:37.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:37.800 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:37.800 -07 000000462 INF: FPGA: Recv ZPIEZORD 25730
17-03-18 01:08:37.810 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:37.810 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.343 V. Piezo Error = -8.5 V.
17-03-18 01:08:37.810 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29570 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29570 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29565 (-129.5 uncal um), Max = 29574 (-129.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:08:37.810 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29570, posNoise = 4, negNoise = 5
17-03-18 01:08:37.810 -07 000000610 INF: Z Motor: After move to -0.130277, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:37.810 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:08:37.810 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:37.810 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:37.810 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:37.810 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:37.810 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:08:37.810 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:37.810 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:08:37.810 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:08:37.810 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:37.810 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:08:37.810 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:08:37.810 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:08:37.820 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:08:37.820 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:08:37.820 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:08:37.820 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:08:37.830 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:08:37.830 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:08:37.830 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:08:37.830 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:08:37.840 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28635 150\n [Camera]
17-03-18 01:08:38.040 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 01:08:38.430 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:08:38.430 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:08:38.430 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:38.430 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:38.430 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 01:08:38.430 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:08:38.430 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:08:38.430 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:38.430 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:38.430 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:08:38.620 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28635 775
17-03-18 01:08:38.770 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:08:38.830 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:08:38.830 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:08:38.830 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:38.830 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:08:38.830 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:08:38.830 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:38.830 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:38.830 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:08:38.830 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:38.840 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:08:38.960 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:08:38.960 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:08:38.960 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:38.960 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:38.960 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 01:08:38.960 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:08:38.960 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:08:38.960 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:38.960 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:38.960 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 01:08:39.150 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:08:39.150 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:08:39.150 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28635 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:08:39.150 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:08:39.150 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.884765625, Z-Position -0.130287305043007. ------
17-03-18 01:08:39.150 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:39.150 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13708 mm
17-03-18 01:08:39.150 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:08:39.160 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:08:39.160 -07 000000579 INF: Y Motor: Moving to 65.7226 mm, started at 64.8848 mm, delta = 0.8378 mm
17-03-18 01:08:39.160 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:39.160 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:39.160 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-18 01:08:39.160 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29946, sync = True, waitForSettling = False)
17-03-18 01:08:39.160 -07 000000444 INF: Z Motor: Moving to -0.137084 mm, started at -0.130287 mm, distance = -6.80 um
17-03-18 01:08:39.160 -07 000000461 INF: FPGA: Recv YRDPOS 132884
17-03-18 01:08:39.170 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:08:39.170 -07 000000579 INF: Y Motor: Encoder = 132884 = motor step 103815.6 = 64.8848 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:39.170 -07 000000579 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:08:39.170 -07 000000579 INF: Y Motor: Moving 1341 steps-16
17-03-18 01:08:39.170 -07 000000444 INF: FPGA: Xmit ZDACW 29946\n [Z Motor]
17-03-18 01:08:39.170 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:08:39.180 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:08:39.180 -07 000000444 INF: FPGA: 'ZDACW 29946' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:08:39.190 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:08:39.200 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:39.200 -07 000000629 INF: FPGA: Recv ZDACR 29946
17-03-18 01:08:39.210 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:08:39.210 -07 000000444 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:08:39.360 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:08:39.360 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:08:39.360 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:39.360 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:08:39.360 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:08:39.360 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:39.370 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:39.370 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:08:39.370 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 01:08:39.370 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:08:39.380 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:08:39.380 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 01:08:39.560 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 01:08:39.560 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:08:39.610 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:39.610 -07 000000444 INF: FPGA: Recv YRDPOS 134594
17-03-18 01:08:39.620 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:39.620 -07 000000579 INF: Y Motor: Encoder = 134594 = motor step 105151.6 = 65.7197 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:39.620 -07 000000579 INF: Y Motor: Position error before settling (table move) = -6 encoder counts (-0.003 mm)
17-03-18 01:08:39.620 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-18 01:08:40.570 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:40.570 -07 000000592 INF: FPGA: Recv YRDPOS 134595
17-03-18 01:08:40.580 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:40.580 -07 000000579 INF: Y Motor: Encoder = 134595 = motor step 105152.3 = 65.7202 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:40.580 -07 000000579 INF: Y Motor: After move to 65.722610, error = -0.002396, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:08:40.580 -07 000000579 INF: Y Motor: Position error after settling (table move) = -5 encoder counts (-0.002 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:08:40.580 -07 000000579 INF: Y Motor: Moved to 65.7202 after 1423 ms (table move)
17-03-18 01:08:40.590 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137084 mm (DAC = 29946)
17-03-18 01:08:40.590 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:40.590 -07 000000592 INF: FPGA: Recv ZSGSRD 30629
17-03-18 01:08:40.600 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:40.600 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:40.600 -07 000000579 INF: FPGA: Recv ZSGSRD 30628
17-03-18 01:08:40.610 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:40.610 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:40.610 -07 000000579 INF: FPGA: Recv ZSGSRD 30629
17-03-18 01:08:40.620 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:40.620 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:40.620 -07 000000579 INF: FPGA: Recv ZSGSRD 30630
17-03-18 01:08:40.630 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:40.630 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:40.630 -07 000000592 INF: FPGA: Recv ZSGSRD 30630
17-03-18 01:08:40.640 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:40.640 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:40.640 -07 000000592 INF: FPGA: Recv ZSGSRD 30630
17-03-18 01:08:40.650 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:40.650 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:40.650 -07 000000592 INF: FPGA: Recv ZSGSRD 30630
17-03-18 01:08:40.660 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:40.660 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:40.660 -07 000000579 INF: FPGA: Recv ZSGSRD 30631
17-03-18 01:08:40.670 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:40.670 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:40.670 -07 000000592 INF: FPGA: Recv ZSGSRD 30622
17-03-18 01:08:40.680 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:40.680 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:40.680 -07 000000579 INF: FPGA: Recv ZSGSRD 30626
17-03-18 01:08:40.690 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:40.690 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:40.690 -07 000000579 INF: FPGA: Recv ZPIEZORD 27128
17-03-18 01:08:40.700 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:40.700 -07 000000474 INF: Z Motor: Piezo is near 38.0 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.569 V. Piezo Error = -7.7 V.
17-03-18 01:08:40.700 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30628 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30630 (-136.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30622 (-136.2 uncal um), Max = 30631 (-136.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:08:40.700 -07 000000474 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30628, posNoise = 3, negNoise = 6
17-03-18 01:08:40.700 -07 000000474 INF: Z Motor: After move to -0.137084, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:40.700 -07 000000474 INF: Z Motor: Settle wait time = 1426 ms, measure time = 111 ms (allowed 150 ms), total time = 1537 ms
17-03-18 01:08:40.700 -07 000000474 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:08:40.740 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-18 01:08:40.740 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:08:40.740 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:40.740 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:40.740 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:40.740 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:08:40.740 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:40.740 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:40.740 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:40.740 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:08:40.750 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:40.750 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:08:40.760 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:08:40.760 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:08:40.760 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:40.810 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:08:41.110 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:08:41.110 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:08:41.110 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:08:41.110 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) start.
17-03-18 01:08:41.150 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:08:41.150 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:41.150 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 01:08:41.230 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:08:41.240 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:41.240 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:08:41.240 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:08:41.250 -07 000000592 INF: Autofocus start
17-03-18 01:08:41.250 -07 000000592 INF: MeasureProfile start
17-03-18 01:08:41.250 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:41.250 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:41.260 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:08:41.260 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:08:41.260 -07 000000592 INF: MeasureProfile done
17-03-18 01:08:41.260 -07 000000592 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 01:08:41.260 -07 000000592 INF: Autofocus finished
17-03-18 01:08:41.460 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:08:41.460 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 01:08:41.460 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.72021484375, Z-position -0.13708412148899. ----------
17-03-18 01:08:41.470 -07 000000610 INF: Cycle	83	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:08:41.470 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28424, sync = True, waitForSettling = True)
17-03-18 01:08:41.470 -07 000000610 INF: Z Motor: Moving to -0.130117 mm, started at -0.137084 mm, distance = 6.97 um
17-03-18 01:08:41.470 -07 000000610 INF: FPGA: Xmit ZDACW 28424\n [Z Motor]
17-03-18 01:08:41.470 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:08:41.480 -07 000000610 INF: FPGA: 'ZDACW 28424' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:08:41.480 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:41.480 -07 000000487 INF: FPGA: Recv ZDACR 28424
17-03-18 01:08:41.490 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:41.490 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:41.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:41.640 -07 000000487 INF: FPGA: Recv ZSGSRD 29542
17-03-18 01:08:41.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:41.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:41.650 -07 000000579 INF: FPGA: Recv ZSGSRD 29545
17-03-18 01:08:41.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:41.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:41.660 -07 000000487 INF: FPGA: Recv ZSGSRD 29541
17-03-18 01:08:41.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:41.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:41.670 -07 000000579 INF: FPGA: Recv ZSGSRD 29545
17-03-18 01:08:41.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:41.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:41.680 -07 000000592 INF: FPGA: Recv ZSGSRD 29543
17-03-18 01:08:41.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:41.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:41.690 -07 000000487 INF: FPGA: Recv ZSGSRD 29543
17-03-18 01:08:41.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:41.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:41.700 -07 000000579 INF: FPGA: Recv ZSGSRD 29548
17-03-18 01:08:41.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:41.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:41.710 -07 000000487 INF: FPGA: Recv ZSGSRD 29545
17-03-18 01:08:41.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:41.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:41.720 -07 000000474 INF: FPGA: Recv ZSGSRD 29540
17-03-18 01:08:41.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:41.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:41.730 -07 000000592 INF: FPGA: Recv ZSGSRD 29543
17-03-18 01:08:41.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:41.740 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:41.740 -07 000000474 INF: FPGA: Recv ZPIEZORD 25728
17-03-18 01:08:41.750 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:41.750 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -8.4 V.
17-03-18 01:08:41.750 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29544 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29543 (-129.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29540 (-129.3 uncal um), Max = 29548 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:08:41.750 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29544, posNoise = 4, negNoise = 4
17-03-18 01:08:41.750 -07 000000610 INF: Z Motor: After move to -0.130117, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:41.750 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:08:41.750 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:41.750 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:41.750 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:41.750 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:08:41.750 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:41.750 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:08:41.750 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:08:41.750 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:41.750 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:41.750 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:08:41.750 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:08:41.750 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:08:41.760 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:08:41.760 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:08:41.760 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:08:41.760 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:08:41.770 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:08:41.770 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:08:41.770 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:08:41.770 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:08:41.780 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28600 150\n [Camera]
17-03-18 01:08:41.980 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:08:42.230 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:08:42.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:08:42.370 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:08:42.370 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:08:42.370 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:42.370 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:42.370 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 01:08:42.370 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:08:42.370 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:08:42.370 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:42.370 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:42.370 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 01:08:42.560 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28600 778
17-03-18 01:08:42.710 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:08:42.750 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 01:08:42.750 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 01:08:42.750 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:42.750 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:42.760 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:08:42.760 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:08:42.760 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:42.760 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:42.760 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:08:42.760 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:08:42.800 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.96762,
17-03-18 01:08:42.900 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:08:42.900 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:08:42.900 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:42.900 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:42.900 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 01:08:42.900 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:08:42.900 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:08:42.900 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:42.900 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:42.900 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 01:08:43.090 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:08:43.090 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:08:43.090 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28600 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-18 01:08:43.090 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:08:43.090 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.72021484375, Z-Position -0.130120275527321. ------
17-03-18 01:08:43.090 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:43.090 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13692 mm
17-03-18 01:08:43.090 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:08:43.100 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:43.100 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:08:43.100 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:08:43.100 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 29911, sync = True, waitForSettling = False)
17-03-18 01:08:43.100 -07 000000487 INF: Z Motor: Moving to -0.136924 mm, started at -0.130120 mm, distance = -6.80 um
17-03-18 01:08:43.100 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:08:43.100 -07 000000629 INF: Y Motor: Moving to 66.5526 mm, started at 65.7202 mm, delta = 0.8324 mm
17-03-18 01:08:43.110 -07 000000487 INF: FPGA: Xmit ZDACW 29911\n [Z Motor]
17-03-18 01:08:43.120 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:43.300 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:08:43.300 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:08:43.300 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:43.300 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:08:43.300 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:08:43.300 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:43.310 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:43.310 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:08:43.310 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:08:43.310 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:08:44.220 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:08:44.220 -07 000000592 INF: FPGA: Recv YRDPOS 134595
17-03-18 01:08:44.220 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:08:44.220 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1111 ms to get response, and 1118 ms overall
17-03-18 01:08:44.220 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1090 ms to get response, and 1116 ms overall
17-03-18 01:08:44.220 -07 000000629 INF: Y Motor: Encoder = 134595 = motor step 105152.3 = 65.7202 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:44.220 -07 000000629 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:08:44.220 -07 000000629 INF: Y Motor: Moving 1332 steps-6
17-03-18 01:08:44.220 -07 000000487 INF: FPGA: 'ZDACW 29911' command took 0 ms to send, 1100 ms to get response, and 1117 ms overall
17-03-18 01:08:44.220 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:08:44.230 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:44.230 -07 000000444 INF: FPGA: Recv ZDACR 29911
17-03-18 01:08:44.240 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:08:44.240 -07 000000487 INF: Z Motor: MoveAbsStepped took 1136 ms (did NOT wait for settling yet))
17-03-18 01:08:44.600 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:08:44.600 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-18 01:08:44.630 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:44.630 -07 000000590 INF: FPGA: Recv YRDPOS 136285
17-03-18 01:08:44.640 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:08:44.640 -07 000000629 INF: Y Motor: Encoder = 136285 = motor step 106472.7 = 66.5454 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:44.640 -07 000000629 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:08:44.640 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.832 mm, average velocity = 2.202 mm/sec
17-03-18 01:08:45.590 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:45.590 -07 000000592 INF: FPGA: Recv YRDPOS 136285
17-03-18 01:08:45.600 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:45.600 -07 000000629 INF: Y Motor: Encoder = 136285 = motor step 106472.7 = 66.5454 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:45.640 -07 000000629 INF: Y Motor: After move to 66.552605, error = -0.007195, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:08:45.640 -07 000000629 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:08:45.640 -07 000000629 INF: Y Motor: Moved to 66.5454 after 2539 ms (table move)
17-03-18 01:08:45.640 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136924 mm (DAC = 29911)
17-03-18 01:08:45.640 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:45.640 -07 000000592 INF: FPGA: Recv ZSGSRD 30605
17-03-18 01:08:45.650 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:08:45.650 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:45.650 -07 000000629 INF: FPGA: Recv ZSGSRD 30608
17-03-18 01:08:45.660 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:45.660 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:45.660 -07 000000462 INF: FPGA: Recv ZSGSRD 30598
17-03-18 01:08:45.670 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:45.670 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:45.670 -07 000000444 INF: FPGA: Recv ZSGSRD 30608
17-03-18 01:08:45.680 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:45.680 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:45.680 -07 000000629 INF: FPGA: Recv ZSGSRD 30604
17-03-18 01:08:45.690 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:45.690 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:45.690 -07 000000590 INF: FPGA: Recv ZSGSRD 30605
17-03-18 01:08:45.700 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:45.700 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:45.700 -07 000000629 INF: FPGA: Recv ZSGSRD 30600
17-03-18 01:08:45.710 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:45.710 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:45.710 -07 000000462 INF: FPGA: Recv ZSGSRD 30602
17-03-18 01:08:45.720 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:45.720 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:45.720 -07 000000592 INF: FPGA: Recv ZSGSRD 30603
17-03-18 01:08:45.730 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:45.730 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:45.730 -07 000000444 INF: FPGA: Recv ZSGSRD 30608
17-03-18 01:08:45.740 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:45.750 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:45.750 -07 000000590 INF: FPGA: Recv ZPIEZORD 27106
17-03-18 01:08:45.760 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:08:45.760 -07 000000461 INF: Z Motor: Piezo is near 37.9 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.564 V. Piezo Error = -7.7 V.
17-03-18 01:08:45.760 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30604 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30604 (-136.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30598 (-136.1 uncal um), Max = 30608 (-136.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:08:45.760 -07 000000461 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30604, posNoise = 4, negNoise = 6
17-03-18 01:08:45.760 -07 000000461 INF: Z Motor: After move to -0.136924, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:45.760 -07 000000461 INF: Z Motor: Settle wait time = 2543 ms, measure time = 114 ms (allowed 150 ms), total time = 2657 ms
17-03-18 01:08:45.760 -07 000000461 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-18 01:08:45.800 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2701 ms
17-03-18 01:08:45.800 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:08:45.800 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:45.800 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:45.800 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:45.800 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:45.800 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:08:45.800 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:45.800 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:08:45.800 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:08:45.800 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:45.800 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:08:45.810 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:08:45.810 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:08:45.820 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:45.860 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:08:46.160 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:08:46.160 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:08:46.160 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:08:46.160 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-18 01:08:46.200 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:08:46.200 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:46.200 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 01:08:46.290 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:08:46.290 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:46.290 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:08:46.290 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:08:46.300 -07 000000629 INF: Autofocus start
17-03-18 01:08:46.300 -07 000000629 INF: MeasureProfile start
17-03-18 01:08:46.300 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:46.300 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:46.310 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:08:46.310 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:08:46.310 -07 000000629 INF: MeasureProfile done
17-03-18 01:08:46.310 -07 000000629 INF: X=-112  Z correction [um]=-0.5485987
17-03-18 01:08:46.310 -07 000000629 INF: Autofocus finished
17-03-18 01:08:46.510 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:08:46.510 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 01:08:46.510 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.54541015625, Z-position -0.136929940397587. ----------
17-03-18 01:08:46.510 -07 000000610 INF: Cycle	83	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:08:46.520 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28304, sync = True, waitForSettling = True)
17-03-18 01:08:46.520 -07 000000610 INF: Z Motor: Moving to -0.129567 mm, started at -0.136930 mm, distance = 7.36 um
17-03-18 01:08:46.520 -07 000000610 INF: FPGA: Xmit ZDACW 28304\n [Z Motor]
17-03-18 01:08:46.520 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:08:46.530 -07 000000610 INF: FPGA: 'ZDACW 28304' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:08:46.530 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:46.530 -07 000000629 INF: FPGA: Recv ZDACR 28304
17-03-18 01:08:46.540 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:46.540 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:46.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:46.690 -07 000000592 INF: FPGA: Recv ZSGSRD 29460
17-03-18 01:08:46.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:46.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:46.700 -07 000000487 INF: FPGA: Recv ZSGSRD 29456
17-03-18 01:08:46.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:46.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:46.710 -07 000000629 INF: FPGA: Recv ZSGSRD 29457
17-03-18 01:08:46.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:46.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:46.720 -07 000000461 INF: FPGA: Recv ZSGSRD 29454
17-03-18 01:08:46.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:46.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:46.730 -07 000000629 INF: FPGA: Recv ZSGSRD 29456
17-03-18 01:08:46.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:46.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:46.740 -07 000000461 INF: FPGA: Recv ZSGSRD 29461
17-03-18 01:08:46.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:46.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:46.750 -07 000000592 INF: FPGA: Recv ZSGSRD 29458
17-03-18 01:08:46.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:46.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:46.760 -07 000000462 INF: FPGA: Recv ZSGSRD 29462
17-03-18 01:08:46.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:46.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:46.770 -07 000000629 INF: FPGA: Recv ZSGSRD 29462
17-03-18 01:08:46.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:46.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:46.780 -07 000000590 INF: FPGA: Recv ZSGSRD 29455
17-03-18 01:08:46.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:46.790 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:46.790 -07 000000585 INF: FPGA: Recv ZPIEZORD 25611
17-03-18 01:08:46.800 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:46.800 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.319 V. Piezo Error = -8.5 V.
17-03-18 01:08:46.800 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29458 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29458 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29454 (-128.8 uncal um), Max = 29462 (-128.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:08:46.800 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29458, posNoise = 4, negNoise = 4
17-03-18 01:08:46.800 -07 000000610 INF: Z Motor: After move to -0.129567, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:46.800 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:08:46.800 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:46.800 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:46.800 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:46.800 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:08:46.800 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:46.800 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:08:46.800 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:08:46.800 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:46.800 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:46.800 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:08:46.800 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:08:46.800 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:08:46.810 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:08:46.810 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:08:46.810 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:08:46.810 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:08:46.820 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:08:46.820 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:08:46.820 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:08:46.820 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:08:46.820 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28481 150\n [Camera]
17-03-18 01:08:47.020 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:08:47.230 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:08:47.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:08:47.410 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:08:47.410 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:08:47.420 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:47.420 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:47.420 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-18 01:08:47.420 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:08:47.420 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:08:47.420 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:47.420 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:47.420 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-18 01:08:47.610 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28481 775
17-03-18 01:08:47.760 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:08:47.820 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:08:47.820 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:08:47.820 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:47.820 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:08:47.820 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:08:47.820 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:47.820 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:47.820 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:08:47.820 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:47.830 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:08:47.950 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:08:47.950 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:08:47.950 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:47.950 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:47.950 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-18 01:08:47.950 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:08:47.950 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:08:47.950 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:48.110 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:48.110 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 01:08:48.140 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:08:48.140 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:08:48.140 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28481 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-18 01:08:48.140 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:08:48.140 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.54541015625, Z-Position -0.129567793283129. ------
17-03-18 01:08:48.140 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:48.140 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13638 mm
17-03-18 01:08:48.140 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:08:48.150 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:48.150 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:08:48.150 -07 000000474 INF: Y Motor: Moving to 67.3826 mm, started at 66.5454 mm, delta = 0.8372 mm
17-03-18 01:08:48.150 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:08:48.150 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29791, sync = True, waitForSettling = False)
17-03-18 01:08:48.150 -07 000000437 INF: Z Motor: Moving to -0.136374 mm, started at -0.129568 mm, distance = -6.81 um
17-03-18 01:08:48.160 -07 000000437 INF: FPGA: Xmit ZDACW 29791\n [Z Motor]
17-03-18 01:08:48.160 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.986717,
17-03-18 01:08:48.160 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:08:48.170 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:48.170 -07 000000437 INF: FPGA: 'ZDACW 29791' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:08:48.170 -07 000000581 INF: FPGA: Recv YRDPOS 136285
17-03-18 01:08:48.180 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 01:08:48.180 -07 000000474 INF: Y Motor: Encoder = 136285 = motor step 106472.7 = 66.5454 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:48.180 -07 000000474 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:08:48.180 -07 000000474 INF: Y Motor: Moving 1340 steps-15
17-03-18 01:08:48.180 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:08:48.200 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:48.200 -07 000000592 INF: FPGA: Recv ZDACR 29791
17-03-18 01:08:48.210 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:08:48.210 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 01:08:48.210 -07 000000437 INF: Z Motor: MoveAbsStepped took 59 ms (did NOT wait for settling yet))
17-03-18 01:08:48.370 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 421 ms.
17-03-18 01:08:48.370 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 421 ms.
17-03-18 01:08:48.370 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:48.380 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:08:48.380 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 429 ms.
17-03-18 01:08:48.380 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:08:48.380 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 230 ms overall
17-03-18 01:08:48.490 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 01:08:48.490 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 01:08:48.490 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:48.500 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:48.500 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 553 ms.
17-03-18 01:08:48.590 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 01:08:48.590 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 410 ms overall
17-03-18 01:08:48.630 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:48.630 -07 000000579 INF: FPGA: Recv YRDPOS 137989
17-03-18 01:08:48.640 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:08:48.640 -07 000000474 INF: Y Motor: Encoder = 137989 = motor step 107803.9 = 67.3774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:48.640 -07 000000474 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 01:08:48.640 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 411 ms, distance = 0.837 mm, average velocity = 2.037 mm/sec
17-03-18 01:08:49.590 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:49.590 -07 000000592 INF: FPGA: Recv YRDPOS 137989
17-03-18 01:08:49.600 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:49.600 -07 000000474 INF: Y Motor: Encoder = 137989 = motor step 107803.9 = 67.3774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:49.610 -07 000000474 INF: Y Motor: After move to 67.382607, error = -0.005165, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:08:49.610 -07 000000474 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:08:49.610 -07 000000474 INF: Y Motor: Moved to 67.3774 after 1465 ms (table move)
17-03-18 01:08:49.620 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136374 mm (DAC = 29791)
17-03-18 01:08:49.620 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:49.620 -07 000000592 INF: FPGA: Recv ZSGSRD 30519
17-03-18 01:08:49.630 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:08:49.630 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:49.630 -07 000000474 INF: FPGA: Recv ZSGSRD 30525
17-03-18 01:08:49.640 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:49.640 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:49.640 -07 000000579 INF: FPGA: Recv ZSGSRD 30520
17-03-18 01:08:49.650 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:49.650 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:49.650 -07 000000474 INF: FPGA: Recv ZSGSRD 30512
17-03-18 01:08:49.660 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:49.660 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:49.660 -07 000000579 INF: FPGA: Recv ZSGSRD 30519
17-03-18 01:08:49.670 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:49.670 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:49.670 -07 000000474 INF: FPGA: Recv ZSGSRD 30518
17-03-18 01:08:49.680 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:49.680 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:49.680 -07 000000592 INF: FPGA: Recv ZSGSRD 30518
17-03-18 01:08:49.690 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:49.690 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:49.690 -07 000000461 INF: FPGA: Recv ZSGSRD 30521
17-03-18 01:08:49.700 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:49.700 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:49.700 -07 000000592 INF: FPGA: Recv ZSGSRD 30522
17-03-18 01:08:49.710 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:49.710 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:49.710 -07 000000461 INF: FPGA: Recv ZSGSRD 30521
17-03-18 01:08:49.720 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:49.720 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:49.720 -07 000000461 INF: FPGA: Recv ZPIEZORD 26976
17-03-18 01:08:49.730 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:49.730 -07 000000444 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -7.8 V.
17-03-18 01:08:49.730 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30520 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30520 (-135.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30512 (-135.5 uncal um), Max = 30525 (-135.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:08:49.730 -07 000000444 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30520, posNoise = 5, negNoise = 8
17-03-18 01:08:49.730 -07 000000444 INF: Z Motor: After move to -0.136374, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:49.730 -07 000000444 INF: Z Motor: Settle wait time = 1468 ms, measure time = 108 ms (allowed 150 ms), total time = 1576 ms
17-03-18 01:08:49.730 -07 000000444 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:08:49.780 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 01:08:49.780 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:08:49.780 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:49.780 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:49.780 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:49.780 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:49.780 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:08:49.780 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:49.780 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:49.780 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:08:49.790 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:49.790 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:08:49.800 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:08:49.800 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:08:49.800 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:49.850 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:08:50.150 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:08:50.150 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:08:50.150 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:08:50.150 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2719780968, 0x0, 559484976) start.
17-03-18 01:08:50.190 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:08:50.190 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:50.190 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 01:08:50.280 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2719780968, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:08:50.280 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:50.280 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:08:50.280 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:08:50.290 -07 000000444 INF: Autofocus start
17-03-18 01:08:50.290 -07 000000444 INF: MeasureProfile start
17-03-18 01:08:50.290 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:50.290 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:50.300 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:08:50.300 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:08:50.300 -07 000000444 INF: MeasureProfile done
17-03-18 01:08:50.300 -07 000000444 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:08:50.300 -07 000000444 INF: Autofocus finished
17-03-18 01:08:50.500 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:08:50.500 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:08:50.500 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37744140625, Z-position -0.136390306577679. ----------
17-03-18 01:08:50.500 -07 000000610 INF: Cycle	83	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:08:50.510 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28299, sync = True, waitForSettling = True)
17-03-18 01:08:50.510 -07 000000610 INF: Z Motor: Moving to -0.129545 mm, started at -0.136390 mm, distance = 6.85 um
17-03-18 01:08:50.510 -07 000000610 INF: FPGA: Xmit ZDACW 28299\n [Z Motor]
17-03-18 01:08:50.510 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:08:50.520 -07 000000610 INF: FPGA: 'ZDACW 28299' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:08:50.520 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:50.520 -07 000000474 INF: FPGA: Recv ZDACR 28299
17-03-18 01:08:50.530 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:50.530 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:50.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:50.680 -07 000000461 INF: FPGA: Recv ZSGSRD 29455
17-03-18 01:08:50.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:50.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:50.690 -07 000000461 INF: FPGA: Recv ZSGSRD 29460
17-03-18 01:08:50.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:50.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:50.700 -07 000000461 INF: FPGA: Recv ZSGSRD 29452
17-03-18 01:08:50.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:50.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:50.710 -07 000000461 INF: FPGA: Recv ZSGSRD 29453
17-03-18 01:08:50.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:50.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:50.720 -07 000000461 INF: FPGA: Recv ZSGSRD 29460
17-03-18 01:08:50.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:50.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:50.730 -07 000000461 INF: FPGA: Recv ZSGSRD 29453
17-03-18 01:08:50.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:50.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:50.740 -07 000000461 INF: FPGA: Recv ZSGSRD 29452
17-03-18 01:08:50.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:50.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:50.750 -07 000000579 INF: FPGA: Recv ZSGSRD 29454
17-03-18 01:08:50.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:50.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:50.760 -07 000000579 INF: FPGA: Recv ZSGSRD 29457
17-03-18 01:08:50.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:50.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:50.770 -07 000000579 INF: FPGA: Recv ZSGSRD 29457
17-03-18 01:08:50.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:50.780 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:50.780 -07 000000461 INF: FPGA: Recv ZPIEZORD 25580
17-03-18 01:08:50.790 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:50.790 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.318 V. Piezo Error = -8.5 V.
17-03-18 01:08:50.790 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29455 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29454 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29452 (-128.8 uncal um), Max = 29460 (-128.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:08:50.790 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29455, posNoise = 5, negNoise = 3
17-03-18 01:08:50.790 -07 000000610 INF: Z Motor: After move to -0.129545, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:50.790 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:08:50.790 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:50.790 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:50.790 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:50.790 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:08:50.790 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:08:50.790 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:08:50.790 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:50.790 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:50.790 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:08:50.790 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:08:50.790 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:50.790 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:08:50.800 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:08:50.800 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:08:50.800 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:08:50.800 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:08:50.810 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 01:08:50.810 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:08:50.810 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 01:08:50.810 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:08:50.810 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28475 150\n [Camera]
17-03-18 01:08:51.010 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:08:51.400 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:08:51.400 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:08:51.410 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:51.410 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:08:51.410 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:08:51.410 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:51.410 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:51.410 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-18 01:08:51.410 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:51.410 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2738862352, 0x0, 391868352) start.
17-03-18 01:08:51.600 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28475 775
17-03-18 01:08:51.750 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:08:51.810 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:08:51.810 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:08:51.810 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:51.810 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2738862352, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:08:51.810 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:08:51.810 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:51.810 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:51.810 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:51.810 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:08:51.820 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:08:51.930 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:08:51.930 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:08:51.940 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:52.050 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:08:52.050 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:08:52.050 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:52.050 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) start.
17-03-18 01:08:52.050 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:52.050 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:52.050 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 01:08:52.130 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:08:52.130 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:08:52.130 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28475 150' command took 2 ms to send, 1301 ms to get response, and 1312 ms overall
17-03-18 01:08:52.130 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:08:52.130 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37744140625, Z-Position -0.129548520646704. ------
17-03-18 01:08:52.130 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:52.130 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13635 mm
17-03-18 01:08:52.130 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:08:52.130 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:08:52.130 -07 000000579 INF: Y Motor: Moving to 68.2126 mm, started at 67.3774 mm, delta = 0.8352 mm
17-03-18 01:08:52.130 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29786, sync = True, waitForSettling = False)
17-03-18 01:08:52.130 -07 000000625 INF: Z Motor: Moving to -0.136352 mm, started at -0.129549 mm, distance = -6.80 um
17-03-18 01:08:52.140 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:52.140 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:08:52.140 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:52.140 -07 000000444 INF: FPGA: Recv YRDPOS 137989
17-03-18 01:08:52.150 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:52.150 -07 000000579 INF: Y Motor: Encoder = 137989 = motor step 107803.9 = 67.3774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:52.150 -07 000000579 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:08:52.150 -07 000000579 INF: Y Motor: Moving 1336 steps-11
17-03-18 01:08:52.150 -07 000000625 INF: FPGA: Xmit ZDACW 29786\n [Z Motor]
17-03-18 01:08:52.150 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:08:52.160 -07 000000625 INF: FPGA: 'ZDACW 29786' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 01:08:52.160 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:08:52.170 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:08:52.180 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:52.180 -07 000000461 INF: FPGA: Recv ZDACR 29786
17-03-18 01:08:52.190 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:08:52.190 -07 000000625 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 01:08:52.230 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:08:52.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:08:52.360 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:08:52.360 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 226 ms overall
17-03-18 01:08:52.450 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:08:52.450 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:08:52.450 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:52.450 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:08:52.450 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:08:52.450 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:52.450 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:08:52.450 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:08:52.460 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 01:08:52.460 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:08:52.540 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:08:52.550 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 399 ms overall
17-03-18 01:08:52.590 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:52.590 -07 000000462 INF: FPGA: Recv YRDPOS 139696
17-03-18 01:08:52.600 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:52.600 -07 000000579 INF: Y Motor: Encoder = 139696 = motor step 109137.5 = 68.2109 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:52.600 -07 000000579 INF: Y Motor: Position error before settling (table move) = -3 encoder counts (-0.001 mm)
17-03-18 01:08:52.600 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.835 mm, average velocity = 2.093 mm/sec
17-03-18 01:08:53.550 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:53.550 -07 000000461 INF: FPGA: Recv YRDPOS 139697
17-03-18 01:08:53.560 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:53.560 -07 000000579 INF: Y Motor: Encoder = 139697 = motor step 109138.3 = 68.2114 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:53.560 -07 000000579 INF: Y Motor: After move to 68.212608, error = -0.001183, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:08:53.560 -07 000000579 INF: Y Motor: Position error after settling (table move) = -2 encoder counts (-0.001 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:08:53.560 -07 000000579 INF: Y Motor: Moved to 68.2114 after 1425 ms (table move)
17-03-18 01:08:53.560 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136352 mm (DAC = 29786)
17-03-18 01:08:53.570 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:53.570 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.974486,
17-03-18 01:08:53.570 -07 000000579 INF: FPGA: Recv ZSGSRD 30518
17-03-18 01:08:53.580 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:08:53.600 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:53.600 -07 000000461 INF: FPGA: Recv ZSGSRD 30510
17-03-18 01:08:53.610 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:08:53.620 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:53.620 -07 000000579 INF: FPGA: Recv ZSGSRD 30516
17-03-18 01:08:53.630 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:08:53.630 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:53.630 -07 000000579 INF: FPGA: Recv ZSGSRD 30516
17-03-18 01:08:53.640 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:53.650 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:53.650 -07 000000579 INF: FPGA: Recv ZSGSRD 30513
17-03-18 01:08:53.660 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:08:53.660 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:53.660 -07 000000579 INF: FPGA: Recv ZSGSRD 30512
17-03-18 01:08:53.670 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:53.670 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:53.670 -07 000000579 INF: FPGA: Recv ZSGSRD 30512
17-03-18 01:08:53.680 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:53.680 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:53.680 -07 000000579 INF: FPGA: Recv ZSGSRD 30516
17-03-18 01:08:53.690 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:53.690 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:53.690 -07 000000579 INF: FPGA: Recv ZSGSRD 30515
17-03-18 01:08:53.700 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:53.700 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:53.700 -07 000000579 INF: FPGA: Recv ZSGSRD 30518
17-03-18 01:08:53.710 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:53.710 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:53.710 -07 000000579 INF: FPGA: Recv ZPIEZORD 26971
17-03-18 01:08:53.720 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:53.720 -07 000000581 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.545 V. Piezo Error = -7.8 V.
17-03-18 01:08:53.720 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30515 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30516 (-135.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30510 (-135.5 uncal um), Max = 30518 (-135.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:08:53.720 -07 000000581 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30515, posNoise = 3, negNoise = 5
17-03-18 01:08:53.720 -07 000000581 INF: Z Motor: After move to -0.136352, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:53.720 -07 000000581 INF: Z Motor: Settle wait time = 1429 ms, measure time = 152 ms (allowed 150 ms), total time = 1581 ms
17-03-18 01:08:53.720 -07 000000581 INF: Z Motor: Warning: Actual position measuring time = 152 ms, longer than max expected time of 150 ms
17-03-18 01:08:53.720 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-18 01:08:53.720 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:08:53.720 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:53.720 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:53.720 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:53.720 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:53.730 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:08:53.730 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:53.730 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:53.730 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:08:53.730 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:53.730 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:08:53.740 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:08:53.740 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:08:53.750 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:53.790 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:08:54.090 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:08:54.090 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:08:54.090 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:08:54.090 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2719780968, 0x0, 559484976) start.
17-03-18 01:08:54.130 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:08:54.130 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:54.130 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 01:08:54.210 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2719780968, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:08:54.210 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:54.210 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:08:54.210 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:08:54.230 -07 000000592 INF: Autofocus start
17-03-18 01:08:54.230 -07 000000592 INF: MeasureProfile start
17-03-18 01:08:54.230 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:54.230 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:54.240 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:08:54.240 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:08:54.240 -07 000000592 INF: MeasureProfile done
17-03-18 01:08:54.240 -07 000000592 INF: X=-80  Z correction [um]=-0.3928285
17-03-18 01:08:54.240 -07 000000592 INF: Autofocus finished
17-03-18 01:08:54.440 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:08:54.440 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 01:08:54.450 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.21142578125, Z-position -0.136358185516971. ----------
17-03-18 01:08:54.450 -07 000000610 INF: Cycle	83	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:08:54.450 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28213, sync = True, waitForSettling = True)
17-03-18 01:08:54.450 -07 000000610 INF: Z Motor: Moving to -0.129151 mm, started at -0.136358 mm, distance = 7.21 um
17-03-18 01:08:54.450 -07 000000610 INF: FPGA: Xmit ZDACW 28213\n [Z Motor]
17-03-18 01:08:54.450 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:08:54.460 -07 000000610 INF: FPGA: 'ZDACW 28213' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:08:54.460 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:54.460 -07 000000581 INF: FPGA: Recv ZDACR 28213
17-03-18 01:08:54.470 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:54.470 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:54.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:54.620 -07 000000437 INF: FPGA: Recv ZSGSRD 29391
17-03-18 01:08:54.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:54.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:54.630 -07 000000585 INF: FPGA: Recv ZSGSRD 29395
17-03-18 01:08:54.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:54.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:54.640 -07 000000487 INF: FPGA: Recv ZSGSRD 29385
17-03-18 01:08:54.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:54.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:54.650 -07 000000581 INF: FPGA: Recv ZSGSRD 29392
17-03-18 01:08:54.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:54.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:54.660 -07 000000487 INF: FPGA: Recv ZSGSRD 29396
17-03-18 01:08:54.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:54.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:54.670 -07 000000437 INF: FPGA: Recv ZSGSRD 29398
17-03-18 01:08:54.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:54.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:54.680 -07 000000487 INF: FPGA: Recv ZSGSRD 29399
17-03-18 01:08:54.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:54.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:54.690 -07 000000592 INF: FPGA: Recv ZSGSRD 29394
17-03-18 01:08:54.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:54.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:54.700 -07 000000487 INF: FPGA: Recv ZSGSRD 29393
17-03-18 01:08:54.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:54.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:54.710 -07 000000590 INF: FPGA: Recv ZSGSRD 29392
17-03-18 01:08:54.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:54.720 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:54.720 -07 000000585 INF: FPGA: Recv ZPIEZORD 25545
17-03-18 01:08:54.730 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:54.730 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.305 V. Piezo Error = -8.5 V.
17-03-18 01:08:54.730 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29394 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29394 (-128.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29385 (-128.3 uncal um), Max = 29399 (-128.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:08:54.730 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29394, posNoise = 5, negNoise = 9
17-03-18 01:08:54.730 -07 000000610 INF: Z Motor: After move to -0.129151, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:54.730 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:08:54.730 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:54.730 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:54.730 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:54.730 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:54.730 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:08:54.730 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:08:54.730 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:08:54.730 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:54.730 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:08:54.730 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:08:54.740 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:54.740 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:08:54.740 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:08:54.740 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:08:54.740 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:54.740 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:08:54.750 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:08:54.750 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:08:54.750 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:08:54.750 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:08:54.750 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28390 150\n [Camera]
17-03-18 01:08:54.950 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:08:55.340 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:08:55.340 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:08:55.340 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:55.340 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:08:55.340 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:08:55.340 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:55.350 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:55.350 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-18 01:08:55.350 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:55.350 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-18 01:08:55.530 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28390 775
17-03-18 01:08:55.680 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:08:55.750 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:08:55.750 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:08:55.750 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:55.750 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:08:55.750 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:08:55.750 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:55.750 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:08:55.760 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:08:55.760 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:08:55.760 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 01:08:55.870 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:08:55.870 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:08:55.870 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:55.870 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:55.870 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2734457048, 0x0, 391868352) start.
17-03-18 01:08:55.870 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:08:55.870 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:08:55.870 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:55.870 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:55.870 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2769879312, 0x0, 418435064) start.
17-03-18 01:08:56.060 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:08:56.060 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:08:56.060 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28390 150' command took 2 ms to send, 1308 ms to get response, and 1315 ms overall
17-03-18 01:08:56.070 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:08:56.070 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.21142578125, Z-Position -0.129156643706057. ------
17-03-18 01:08:56.070 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:56.070 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13596 mm
17-03-18 01:08:56.070 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:08:56.070 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:56.070 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:08:56.070 -07 000000462 INF: Y Motor: Moving to 69.0426 mm, started at 68.2114 mm, delta = 0.8312 mm
17-03-18 01:08:56.080 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:08:56.080 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:56.080 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29700, sync = True, waitForSettling = False)
17-03-18 01:08:56.080 -07 000000444 INF: Z Motor: Moving to -0.135958 mm, started at -0.129157 mm, distance = -6.80 um
17-03-18 01:08:56.080 -07 000000581 INF: FPGA: Recv YRDPOS 139697
17-03-18 01:08:56.090 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:08:56.090 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:56.090 -07 000000462 INF: Y Motor: Encoder = 139697 = motor step 109138.3 = 68.2114 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:56.090 -07 000000462 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:08:56.090 -07 000000462 INF: Y Motor: Moving 1330 steps-3
17-03-18 01:08:56.100 -07 000000444 INF: FPGA: Xmit ZDACW 29700\n [Z Motor]
17-03-18 01:08:56.100 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:08:56.110 -07 000000444 INF: FPGA: 'ZDACW 29700' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:08:56.110 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:08:56.120 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:56.270 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2769879312, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:08:56.270 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:08:56.270 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:56.270 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2734457048, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:08:56.270 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:08:56.270 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:56.270 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:08:56.280 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:08:56.280 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:08:56.280 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:08:56.950 -07 000000592 INF: FPGA: Recv ZDACR 29700
17-03-18 01:08:56.950 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:08:56.950 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 820 ms to get response, and 840 ms overall
17-03-18 01:08:56.950 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 01:08:56.950 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 831 ms to get response, and 860 ms overall
17-03-18 01:08:56.950 -07 000000444 INF: Z Motor: MoveAbsStepped took 870 ms (did NOT wait for settling yet))
17-03-18 01:08:56.950 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 850 ms to get response, and 870 ms overall
17-03-18 01:08:56.980 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:56.990 -07 000000629 INF: FPGA: Recv YRDPOS 141379
17-03-18 01:08:56.990 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:08:56.990 -07 000000462 INF: Y Motor: Encoder = 141379 = motor step 110452.3 = 69.0327 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:56.990 -07 000000462 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:08:56.990 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 860 ms, distance = 0.831 mm, average velocity = 0.966 mm/sec
17-03-18 01:08:57.230 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:08:57.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:08:57.940 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:08:57.940 -07 000000629 INF: FPGA: Recv YRDPOS 141379
17-03-18 01:08:57.950 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:08:57.950 -07 000000462 INF: Y Motor: Encoder = 141379 = motor step 110452.3 = 69.0327 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:08:57.970 -07 000000462 INF: Y Motor: After move to 69.042610, error = -0.009895, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:08:57.970 -07 000000462 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:08:57.970 -07 000000462 INF: Y Motor: Moved to 69.0327 after 1897 ms (table move)
17-03-18 01:08:57.980 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135958 mm (DAC = 29700)
17-03-18 01:08:57.980 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:57.980 -07 000000592 INF: FPGA: Recv ZSGSRD 30457
17-03-18 01:08:57.990 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:57.990 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:57.990 -07 000000579 INF: FPGA: Recv ZSGSRD 30451
17-03-18 01:08:58.000 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:58.000 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:58.000 -07 000000462 INF: FPGA: Recv ZSGSRD 30450
17-03-18 01:08:58.010 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:58.010 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:58.010 -07 000000629 INF: FPGA: Recv ZSGSRD 30447
17-03-18 01:08:58.020 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:58.020 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:58.020 -07 000000592 INF: FPGA: Recv ZSGSRD 30450
17-03-18 01:08:58.030 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:58.030 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:58.030 -07 000000462 INF: FPGA: Recv ZSGSRD 30460
17-03-18 01:08:58.040 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:58.040 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:58.040 -07 000000592 INF: FPGA: Recv ZSGSRD 30446
17-03-18 01:08:58.050 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:58.050 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:58.050 -07 000000579 INF: FPGA: Recv ZSGSRD 30451
17-03-18 01:08:58.060 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:58.060 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:58.060 -07 000000579 INF: FPGA: Recv ZSGSRD 30453
17-03-18 01:08:58.070 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:58.070 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:58.070 -07 000000579 INF: FPGA: Recv ZSGSRD 30456
17-03-18 01:08:58.080 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:58.080 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:58.080 -07 000000592 INF: FPGA: Recv ZPIEZORD 26937
17-03-18 01:08:58.090 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:58.090 -07 000000590 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.532 V. Piezo Error = -7.8 V.
17-03-18 01:08:58.090 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30452 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30451 (-135.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30446 (-135.1 uncal um), Max = 30460 (-135.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:08:58.090 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30452, posNoise = 8, negNoise = 6
17-03-18 01:08:58.090 -07 000000590 INF: Z Motor: After move to -0.135958, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:58.090 -07 000000590 INF: Z Motor: Settle wait time = 1899 ms, measure time = 110 ms (allowed 150 ms), total time = 2009 ms
17-03-18 01:08:58.090 -07 000000590 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:08:58.130 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2054 ms
17-03-18 01:08:58.130 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:08:58.130 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:58.130 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:58.130 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:58.130 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:08:58.130 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:58.140 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:58.140 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:58.140 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:08:58.140 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:58.140 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:08:58.150 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:08:58.150 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:08:58.150 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:08:58.190 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:08:58.490 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:08:58.490 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:08:58.490 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:08:58.620 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:08:58.620 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:08:58.620 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 644204472, 0x0, 559484976) start.
17-03-18 01:08:58.620 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 462 ms to get response, and 469 ms overall
17-03-18 01:08:58.740 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 644204472, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 01:08:58.740 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:08:58.740 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:08:58.740 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 248 ms.
17-03-18 01:08:58.820 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:08:58.820 -07 000000625 INF: Autofocus start
17-03-18 01:08:58.820 -07 000000625 INF: MeasureProfile start
17-03-18 01:08:58.820 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:08:58.830 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:08:58.830 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:08:58.830 -07 000000625 INF: MeasureProfile done
17-03-18 01:08:58.830 -07 000000625 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 01:08:58.830 -07 000000625 INF: Autofocus finished
17-03-18 01:08:58.970 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.98264,
17-03-18 01:08:59.030 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:08:59.030 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-18 01:08:59.030 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.03271484375, Z-position -0.13595346015204. ----------
17-03-18 01:08:59.030 -07 000000610 INF: Cycle	83	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:08:59.040 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28195, sync = True, waitForSettling = True)
17-03-18 01:08:59.040 -07 000000610 INF: Z Motor: Moving to -0.129068 mm, started at -0.135953 mm, distance = 6.89 um
17-03-18 01:08:59.040 -07 000000610 INF: FPGA: Xmit ZDACW 28195\n [Z Motor]
17-03-18 01:08:59.040 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:08:59.050 -07 000000610 INF: FPGA: 'ZDACW 28195' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:59.050 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:08:59.050 -07 000000590 INF: FPGA: Recv ZDACR 28195
17-03-18 01:08:59.060 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:59.060 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:08:59.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:59.210 -07 000000629 INF: FPGA: Recv ZSGSRD 29381
17-03-18 01:08:59.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:59.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:59.230 -07 000000629 INF: FPGA: Recv ZSGSRD 29383
17-03-18 01:08:59.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 6 ms to send, 4 ms to get response, and 12 ms overall
17-03-18 01:08:59.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:59.230 -07 000000629 INF: FPGA: Recv ZSGSRD 29383
17-03-18 01:08:59.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:08:59.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:59.240 -07 000000590 INF: FPGA: Recv ZSGSRD 29387
17-03-18 01:08:59.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:59.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:59.250 -07 000000590 INF: FPGA: Recv ZSGSRD 29386
17-03-18 01:08:59.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:59.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:59.260 -07 000000590 INF: FPGA: Recv ZSGSRD 29378
17-03-18 01:08:59.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:59.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:59.270 -07 000000581 INF: FPGA: Recv ZSGSRD 29388
17-03-18 01:08:59.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:08:59.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:59.280 -07 000000581 INF: FPGA: Recv ZSGSRD 29384
17-03-18 01:08:59.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:59.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:59.290 -07 000000625 INF: FPGA: Recv ZSGSRD 29378
17-03-18 01:08:59.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:59.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:08:59.300 -07 000000581 INF: FPGA: Recv ZSGSRD 29381
17-03-18 01:08:59.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:59.310 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:08:59.310 -07 000000581 INF: FPGA: Recv ZPIEZORD 25496
17-03-18 01:08:59.320 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:08:59.320 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.302 V. Piezo Error = -8.6 V.
17-03-18 01:08:59.320 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29383 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29383 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29378 (-128.3 uncal um), Max = 29388 (-128.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:08:59.320 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29383, posNoise = 5, negNoise = 5
17-03-18 01:08:59.320 -07 000000610 INF: Z Motor: After move to -0.129068, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:08:59.320 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:08:59.320 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:08:59.320 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:08:59.320 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:08:59.320 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:08:59.320 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:08:59.320 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:08:59.320 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:08:59.320 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:08:59.320 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:08:59.320 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:08:59.320 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:08:59.320 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:08:59.320 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:08:59.330 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:08:59.330 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:08:59.330 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:08:59.340 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:08:59.340 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:08:59.340 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:08:59.340 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:08:59.340 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28372 150\n [Camera]
17-03-18 01:08:59.540 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:08:59.930 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:08:59.930 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:08:59.930 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:08:59.930 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:08:59.930 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:08:59.940 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:08:59.940 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:08:59.940 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:08:59.940 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:08:59.940 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:09:00.130 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28372 775
17-03-18 01:09:00.280 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:09:00.340 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:09:00.340 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:09:00.340 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:00.340 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:00.340 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:09:00.340 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:09:00.340 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:09:00.340 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:00.340 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:00.350 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:09:00.470 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-18 01:09:00.470 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-18 01:09:00.470 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:09:00.470 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:09:00.470 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:09:00.470 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:09:00.470 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:09:00.470 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:09:00.470 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:09:00.470 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:09:00.660 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:09:00.660 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:09:00.660 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28372 150' command took 2 ms to send, 1301 ms to get response, and 1313 ms overall
17-03-18 01:09:00.660 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:09:00.660 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.03271484375, Z-Position -0.129085977372497. ------
17-03-18 01:09:00.770 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:09:00.860 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:09:00.870 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:09:00.870 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:00.870 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:09:00.870 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:09:00.870 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:00.870 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:00.870 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:09:00.870 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:09:00.880 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:09:00.880 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13588 mm
17-03-18 01:09:00.880 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:09:00.890 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:09:00.890 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 113 ms to get response, and 114 ms overall
17-03-18 01:09:00.890 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:09:00.890 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:09:00.890 -07 000000590 INF: Y Motor: Moving to 69.8726 mm, started at 69.0327 mm, delta = 0.8399 mm
17-03-18 01:09:00.900 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:01.720 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29683, sync = True, waitForSettling = False)
17-03-18 01:09:01.720 -07 000000437 INF: Z Motor: Moving to -0.135880 mm, started at -0.129086 mm, distance = -6.79 um
17-03-18 01:09:01.720 -07 000000437 INF: FPGA: Xmit ZDACW 29683\n [Z Motor]
17-03-18 01:09:02.720 -07 000000487 INF: FPGA: Recv YRDPOS 141380
17-03-18 01:09:02.720 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:09:02.720 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:09:02.720 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:09:02.720 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1826 ms to get response, and 1833 ms overall
17-03-18 01:09:02.720 -07 000000437 INF: FPGA: 'ZDACW 29683' command took 0 ms to send, 996 ms to get response, and 1005 ms overall
17-03-18 01:09:02.720 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:09:02.720 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:09:02.720 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1816 ms to get response, and 1831 ms overall
17-03-18 01:09:02.720 -07 000000590 INF: Y Motor: Encoder = 141380 = motor step 110453.1 = 69.0332 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:02.730 -07 000000629 INF: FPGA: Recv ZDACR 29683
17-03-18 01:09:02.730 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:09:02.730 -07 000000437 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-18 01:09:02.730 -07 000000590 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:09:02.730 -07 000000590 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:09:02.730 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:09:03.110 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 01:09:03.110 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 378 ms overall
17-03-18 01:09:03.150 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:03.150 -07 000000487 INF: FPGA: Recv YRDPOS 143092
17-03-18 01:09:03.160 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:09:03.160 -07 000000590 INF: Y Motor: Encoder = 143092 = motor step 111790.6 = 69.8691 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:03.160 -07 000000590 INF: Y Motor: Position error before settling (table move) = -7 encoder counts (-0.003 mm)
17-03-18 01:09:03.160 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.222 mm/sec
17-03-18 01:09:04.110 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:04.110 -07 000000629 INF: FPGA: Recv YRDPOS 143092
17-03-18 01:09:04.120 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:04.120 -07 000000590 INF: Y Motor: Encoder = 143092 = motor step 111790.6 = 69.8691 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:04.120 -07 000000590 INF: Y Motor: After move to 69.872612, error = -0.003471, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:09:04.120 -07 000000590 INF: Y Motor: Position error after settling (table move) = -7 encoder counts (-0.003 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:09:04.120 -07 000000590 INF: Y Motor: Moved to 69.8691 after 3231 ms (table move)
17-03-18 01:09:04.120 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135880 mm (DAC = 29683)
17-03-18 01:09:04.120 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:04.130 -07 000000487 INF: FPGA: Recv ZSGSRD 30445
17-03-18 01:09:04.130 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:09:04.130 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:04.130 -07 000000629 INF: FPGA: Recv ZSGSRD 30445
17-03-18 01:09:04.140 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:09:04.140 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:04.140 -07 000000629 INF: FPGA: Recv ZSGSRD 30438
17-03-18 01:09:04.150 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:04.150 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:04.150 -07 000000487 INF: FPGA: Recv ZSGSRD 30443
17-03-18 01:09:04.160 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:04.160 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:04.160 -07 000000629 INF: FPGA: Recv ZSGSRD 30450
17-03-18 01:09:04.170 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:04.170 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:04.170 -07 000000487 INF: FPGA: Recv ZSGSRD 30445
17-03-18 01:09:04.180 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:04.180 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:04.180 -07 000000590 INF: FPGA: Recv ZSGSRD 30443
17-03-18 01:09:04.190 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:04.190 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:04.190 -07 000000444 INF: FPGA: Recv ZSGSRD 30438
17-03-18 01:09:04.200 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:04.200 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:04.200 -07 000000444 INF: FPGA: Recv ZSGSRD 30438
17-03-18 01:09:04.210 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:04.210 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:04.210 -07 000000629 INF: FPGA: Recv ZSGSRD 30442
17-03-18 01:09:04.220 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:04.220 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:09:04.220 -07 000000625 INF: FPGA: Recv ZPIEZORD 26843
17-03-18 01:09:04.230 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:04.230 -07 000000474 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.529 V. Piezo Error = -7.9 V.
17-03-18 01:09:04.230 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30443 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30443 (-135.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30438 (-135.1 uncal um), Max = 30450 (-135.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:09:04.230 -07 000000474 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30443, posNoise = 7, negNoise = 5
17-03-18 01:09:04.230 -07 000000474 INF: Z Motor: After move to -0.135880, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:09:04.230 -07 000000474 INF: Z Motor: Settle wait time = 2407 ms, measure time = 101 ms (allowed 150 ms), total time = 2508 ms
17-03-18 01:09:04.230 -07 000000474 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:09:04.280 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3391 ms
17-03-18 01:09:04.280 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:09:04.280 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:09:04.280 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:09:04.280 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:09:04.280 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:09:04.280 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:09:04.280 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:09:04.280 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:09:04.280 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:09:04.290 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:09:04.290 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:09:04.290 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:09:04.290 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:09:04.300 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:09:04.330 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.000345,
17-03-18 01:09:04.340 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:09:04.640 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:09:04.640 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:09:04.640 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:09:04.650 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 01:09:04.680 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:09:04.680 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:09:04.680 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 01:09:04.770 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:09:04.770 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:04.770 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:09:04.770 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:09:04.880 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:09:04.880 -07 000000444 INF: Autofocus start
17-03-18 01:09:04.880 -07 000000444 INF: MeasureProfile start
17-03-18 01:09:04.880 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:09:04.890 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:09:04.890 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:09:04.890 -07 000000444 INF: MeasureProfile done
17-03-18 01:09:04.890 -07 000000444 INF: X=-112  Z correction [um]=-0.5485987
17-03-18 01:09:04.890 -07 000000444 INF: Autofocus finished
17-03-18 01:09:05.090 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:09:05.090 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:09:05.090 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.869140625, Z-position -0.135895642242764. ----------
17-03-18 01:09:05.090 -07 000000610 INF: Cycle	83	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:09:05.100 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28075, sync = True, waitForSettling = True)
17-03-18 01:09:05.100 -07 000000610 INF: Z Motor: Moving to -0.128519 mm, started at -0.135896 mm, distance = 7.38 um
17-03-18 01:09:05.100 -07 000000610 INF: FPGA: Xmit ZDACW 28075\n [Z Motor]
17-03-18 01:09:05.100 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:09:05.110 -07 000000610 INF: FPGA: 'ZDACW 28075' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:05.110 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:09:05.110 -07 000000444 INF: FPGA: Recv ZDACR 28075
17-03-18 01:09:05.120 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:05.120 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:09:05.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:05.270 -07 000000487 INF: FPGA: Recv ZSGSRD 29298
17-03-18 01:09:05.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:05.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:05.280 -07 000000461 INF: FPGA: Recv ZSGSRD 29291
17-03-18 01:09:05.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:05.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:05.290 -07 000000487 INF: FPGA: Recv ZSGSRD 29297
17-03-18 01:09:05.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:05.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:05.300 -07 000000444 INF: FPGA: Recv ZSGSRD 29295
17-03-18 01:09:05.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:05.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:05.310 -07 000000590 INF: FPGA: Recv ZSGSRD 29300
17-03-18 01:09:05.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:05.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:05.320 -07 000000444 INF: FPGA: Recv ZSGSRD 29296
17-03-18 01:09:05.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:05.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:05.330 -07 000000590 INF: FPGA: Recv ZSGSRD 29286
17-03-18 01:09:05.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:05.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:05.340 -07 000000461 INF: FPGA: Recv ZSGSRD 29307
17-03-18 01:09:05.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:05.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:05.350 -07 000000590 INF: FPGA: Recv ZSGSRD 29288
17-03-18 01:09:05.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:05.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:05.360 -07 000000444 INF: FPGA: Recv ZSGSRD 29293
17-03-18 01:09:05.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:05.370 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:09:05.370 -07 000000461 INF: FPGA: Recv ZPIEZORD 25377
17-03-18 01:09:05.380 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:05.380 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.284 V. Piezo Error = -8.6 V.
17-03-18 01:09:05.380 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29295 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29296 (-127.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 29286 (-127.7 uncal um), Max = 29307 (-127.8 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:09:05.380 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29295, posNoise = 12, negNoise = 9
17-03-18 01:09:05.380 -07 000000610 INF: Z Motor: After move to -0.128519, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:09:05.380 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:09:05.380 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:09:05.380 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:09:05.380 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:09:05.380 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:09:05.380 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:09:05.380 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:09:05.380 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:09:05.380 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:09:05.380 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:09:05.380 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:09:05.380 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 01:09:05.380 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:09:05.390 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:09:05.390 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:09:05.390 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:09:05.390 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:09:05.400 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:09:05.400 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:09:05.400 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:09:05.400 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:09:05.400 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28252 150\n [Camera]
17-03-18 01:09:05.600 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:09:05.990 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:09:05.990 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:09:05.990 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:09:06.000 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:09:06.000 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:09:06.000 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:09:06.000 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:09:06.000 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:09:06.010 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:09:06.010 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:09:06.190 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28252 775
17-03-18 01:09:06.340 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:09:06.400 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:09:06.400 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:09:06.400 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:06.400 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:09:06.400 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:09:06.400 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:06.400 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:09:06.400 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:06.410 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:06.410 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:09:06.520 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:09:06.520 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:09:06.530 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:09:06.530 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:09:06.530 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:09:06.530 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:09:06.530 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:09:06.540 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:09:06.540 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:09:06.540 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:09:06.720 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:09:06.720 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:09:06.720 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28252 150' command took 2 ms to send, 1301 ms to get response, and 1312 ms overall
17-03-18 01:09:06.720 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:09:06.720 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.869140625, Z-Position -0.128520646704022. ------
17-03-18 01:09:06.720 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:09:06.720 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13533 mm
17-03-18 01:09:06.720 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:09:06.910 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 01:09:06.910 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:09:06.910 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:06.910 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:09:06.920 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:09:06.920 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 01:09:06.920 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 01:09:06.920 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:06.920 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:06.930 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:09:06.930 -07 000000579 INF: Y Motor: Moving to 70.7026 mm, started at 69.8691 mm, delta = 0.8335 mm
17-03-18 01:09:06.930 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:06.930 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:09:06.940 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:09:06.940 -07 000000461 INF: FPGA: Recv YRDPOS 143093
17-03-18 01:09:06.940 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 217 ms to get response, and 220 ms overall
17-03-18 01:09:06.940 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 7 ms to get response, and 15 ms overall
17-03-18 01:09:06.940 -07 000000579 INF: Y Motor: Encoder = 143093 = motor step 111791.4 = 69.8696 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:06.940 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:09:06.940 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29563, sync = True, waitForSettling = False)
17-03-18 01:09:06.940 -07 000000461 INF: Z Motor: Moving to -0.135331 mm, started at -0.128521 mm, distance = -6.81 um
17-03-18 01:09:06.950 -07 000000461 INF: FPGA: Xmit ZDACW 29563\n [Z Motor]
17-03-18 01:09:06.950 -07 000000579 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:09:06.950 -07 000000579 INF: Y Motor: Moving 1333 steps-7
17-03-18 01:09:06.960 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:09:07.970 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:09:07.970 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:09:07.970 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:09:07.970 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1020 ms to get response, and 1023 ms overall
17-03-18 01:09:07.970 -07 000000461 INF: FPGA: 'ZDACW 29563' command took 0 ms to send, 1010 ms to get response, and 1022 ms overall
17-03-18 01:09:07.970 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 01:09:07.970 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1001 ms to get response, and 1020 ms overall
17-03-18 01:09:07.970 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:09:07.970 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:09:07.970 -07 000000585 INF: FPGA: Recv ZDACR 29563
17-03-18 01:09:07.980 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:09:07.980 -07 000000461 INF: Z Motor: MoveAbsStepped took 1031 ms (did NOT wait for settling yet))
17-03-18 01:09:08.000 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:08.010 -07 000000585 INF: FPGA: Recv YRDPOS 144781
17-03-18 01:09:08.010 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:09:08.010 -07 000000579 INF: Y Motor: Encoder = 144781 = motor step 113110.2 = 70.6938 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:08.010 -07 000000579 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:09:08.010 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1020 ms, distance = 0.833 mm, average velocity = 0.817 mm/sec
17-03-18 01:09:08.960 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:08.960 -07 000000585 INF: FPGA: Recv YRDPOS 144781
17-03-18 01:09:08.970 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:08.970 -07 000000579 INF: Y Motor: Encoder = 144781 = motor step 113110.2 = 70.6938 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:08.990 -07 000000579 INF: Y Motor: After move to 70.702606, error = -0.008759, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:09:08.990 -07 000000579 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:09:08.990 -07 000000579 INF: Y Motor: Moved to 70.6938 after 2065 ms (table move)
17-03-18 01:09:08.990 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135331 mm (DAC = 29563)
17-03-18 01:09:09.000 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:09.000 -07 000000629 INF: FPGA: Recv ZSGSRD 30353
17-03-18 01:09:09.010 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:09.010 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:09.010 -07 000000585 INF: FPGA: Recv ZSGSRD 30358
17-03-18 01:09:09.020 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:09.020 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:09.020 -07 000000585 INF: FPGA: Recv ZSGSRD 30354
17-03-18 01:09:09.030 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:09.030 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:09.030 -07 000000629 INF: FPGA: Recv ZSGSRD 30358
17-03-18 01:09:09.040 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:09.040 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:09.040 -07 000000629 INF: FPGA: Recv ZSGSRD 30356
17-03-18 01:09:09.050 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:09.050 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:09.050 -07 000000461 INF: FPGA: Recv ZSGSRD 30357
17-03-18 01:09:09.060 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:09.060 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:09.060 -07 000000461 INF: FPGA: Recv ZSGSRD 30356
17-03-18 01:09:09.070 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:09.070 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:09.070 -07 000000579 INF: FPGA: Recv ZSGSRD 30359
17-03-18 01:09:09.080 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:09.080 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:09.080 -07 000000579 INF: FPGA: Recv ZSGSRD 30353
17-03-18 01:09:09.090 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:09.090 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:09.090 -07 000000585 INF: FPGA: Recv ZSGSRD 30356
17-03-18 01:09:09.100 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:09.100 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:09:09.100 -07 000000461 INF: FPGA: Recv ZPIEZORD 26779
17-03-18 01:09:09.110 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:09.110 -07 000000437 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.511 V. Piezo Error = -7.9 V.
17-03-18 01:09:09.110 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30356 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30356 (-134.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30353 (-134.5 uncal um), Max = 30359 (-134.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:09:09.110 -07 000000437 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30356, posNoise = 3, negNoise = 3
17-03-18 01:09:09.110 -07 000000437 INF: Z Motor: After move to -0.135331, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:09:09.110 -07 000000437 INF: Z Motor: Settle wait time = 2051 ms, measure time = 111 ms (allowed 150 ms), total time = 2162 ms
17-03-18 01:09:09.110 -07 000000437 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:09:09.150 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2423 ms
17-03-18 01:09:09.150 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:09:09.150 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:09:09.150 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:09:09.150 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:09:09.150 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:09:09.150 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:09:09.150 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:09:09.150 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:09:09.150 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:09:09.160 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:09:09.160 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:09:09.170 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:09:09.170 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:09:09.170 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:09:09.220 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:09:09.520 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:09:09.520 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:09:09.520 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:09:09.520 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 01:09:09.550 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:09:09.560 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:09:09.560 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:09:09.640 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:09:09.640 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:09.650 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:09:09.650 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:09:09.660 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:09:09.660 -07 000000437 INF: Autofocus start
17-03-18 01:09:09.660 -07 000000437 INF: MeasureProfile start
17-03-18 01:09:09.660 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:09:09.670 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:09:09.670 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:09:09.670 -07 000000437 INF: MeasureProfile done
17-03-18 01:09:09.670 -07 000000437 INF: X=-144  Z correction [um]=-0.7043689
17-03-18 01:09:09.670 -07 000000437 INF: Autofocus finished
17-03-18 01:09:09.690 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.003063,
17-03-18 01:09:09.870 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:09:09.870 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:09:09.870 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.69384765625, Z-position -0.135336735786431. ----------
17-03-18 01:09:09.870 -07 000000610 INF: Cycle	83	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:09:09.880 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27921, sync = True, waitForSettling = True)
17-03-18 01:09:09.880 -07 000000610 INF: Z Motor: Moving to -0.127814 mm, started at -0.135337 mm, distance = 7.52 um
17-03-18 01:09:09.880 -07 000000610 INF: FPGA: Xmit ZDACW 27921\n [Z Motor]
17-03-18 01:09:09.880 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 01:09:09.890 -07 000000610 INF: FPGA: 'ZDACW 27921' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:09.890 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:09:09.890 -07 000000625 INF: FPGA: Recv ZDACR 27921
17-03-18 01:09:09.900 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:09.900 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:09:10.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:10.050 -07 000000581 INF: FPGA: Recv ZSGSRD 29185
17-03-18 01:09:10.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:10.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:10.060 -07 000000461 INF: FPGA: Recv ZSGSRD 29196
17-03-18 01:09:10.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:09:10.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:10.070 -07 000000474 INF: FPGA: Recv ZSGSRD 29188
17-03-18 01:09:10.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:10.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:10.080 -07 000000629 INF: FPGA: Recv ZSGSRD 29179
17-03-18 01:09:10.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:10.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:10.090 -07 000000585 INF: FPGA: Recv ZSGSRD 29187
17-03-18 01:09:10.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:10.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:10.100 -07 000000581 INF: FPGA: Recv ZSGSRD 29185
17-03-18 01:09:10.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:10.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:10.110 -07 000000474 INF: FPGA: Recv ZSGSRD 29186
17-03-18 01:09:10.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:10.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:10.120 -07 000000625 INF: FPGA: Recv ZSGSRD 29190
17-03-18 01:09:10.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:10.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:10.130 -07 000000579 INF: FPGA: Recv ZSGSRD 29185
17-03-18 01:09:10.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:10.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:10.140 -07 000000581 INF: FPGA: Recv ZSGSRD 29190
17-03-18 01:09:10.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:10.150 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:09:10.150 -07 000000474 INF: FPGA: Recv ZPIEZORD 25239
17-03-18 01:09:10.160 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:10.160 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.260 V. Piezo Error = -8.7 V.
17-03-18 01:09:10.160 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29187 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29186 (-127.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29179 (-127.0 uncal um), Max = 29196 (-127.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:09:10.160 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29187, posNoise = 9, negNoise = 8
17-03-18 01:09:10.160 -07 000000610 INF: Z Motor: After move to -0.127814, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:09:10.160 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:09:10.160 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:09:10.160 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:09:10.160 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:09:10.160 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:09:10.160 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:09:10.160 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:09:10.160 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:09:10.160 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:09:10.160 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:09:10.160 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:09:10.160 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:09:10.160 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:09:10.170 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:09:10.170 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:09:10.170 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:09:10.170 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:09:10.180 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:09:10.180 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:09:10.180 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:09:10.180 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:09:10.190 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28098 150\n [Camera]
17-03-18 01:09:10.390 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:09:10.780 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:09:10.780 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:09:10.780 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:09:10.780 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:09:10.780 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:09:10.780 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:09:10.780 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:09:10.780 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:09:10.780 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:09:10.780 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:09:10.970 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28098 777
17-03-18 01:09:11.120 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:09:11.160 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 01:09:11.160 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 01:09:11.160 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:11.160 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:11.160 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:09:11.160 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:09:11.160 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:11.170 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:11.170 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:09:11.170 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:09:11.310 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:09:11.310 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:09:11.310 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:09:11.310 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:09:11.310 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:09:11.310 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:09:11.310 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:09:11.310 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:09:11.310 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:09:11.310 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:09:11.500 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:09:11.500 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:09:11.500 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28098 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:09:11.500 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:09:11.500 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.69384765625, Z-Position -0.127826831792712. ------
17-03-18 01:09:11.510 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:09:11.510 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13462 mm
17-03-18 01:09:11.510 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:09:11.720 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 408 ms.
17-03-18 01:09:11.720 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:09:11.720 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:11.720 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 01:09:11.720 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 01:09:11.720 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:11.720 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:11.720 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:09:11.720 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 01:09:11.730 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 01:09:11.740 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:09:11.740 -07 000000579 INF: Y Motor: Moving to 71.5326 mm, started at 70.6938 mm, delta = 0.8388 mm
17-03-18 01:09:11.740 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:11.740 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:09:11.740 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 223 ms to get response, and 233 ms overall
17-03-18 01:09:11.740 -07 000000474 INF: FPGA: Recv YRDPOS 144781
17-03-18 01:09:11.740 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29409, sync = True, waitForSettling = False)
17-03-18 01:09:11.740 -07 000000474 INF: Z Motor: Moving to -0.134626 mm, started at -0.127827 mm, distance = -6.80 um
17-03-18 01:09:11.750 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:11.750 -07 000000579 INF: Y Motor: Encoder = 144781 = motor step 113110.2 = 70.6938 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:11.750 -07 000000579 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:09:11.750 -07 000000579 INF: Y Motor: Moving 1342 steps-18
17-03-18 01:09:11.750 -07 000000474 INF: FPGA: Xmit ZDACW 29409\n [Z Motor]
17-03-18 01:09:11.760 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:09:11.770 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:09:12.720 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:09:12.720 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:09:12.720 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 01:09:12.720 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:09:12.720 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 940 ms to get response, and 967 ms overall
17-03-18 01:09:12.720 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 950 ms to get response, and 976 ms overall
17-03-18 01:09:12.720 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:09:12.720 -07 000000474 INF: FPGA: 'ZDACW 29409' command took 3 ms to send, 960 ms to get response, and 975 ms overall
17-03-18 01:09:12.720 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:09:12.720 -07 000000625 INF: FPGA: Recv ZDACR 29409
17-03-18 01:09:12.730 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:12.730 -07 000000474 INF: Z Motor: MoveAbsStepped took 986 ms (did NOT wait for settling yet))
17-03-18 01:09:12.760 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:12.760 -07 000000474 INF: FPGA: Recv YRDPOS 146483
17-03-18 01:09:12.770 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:09:12.770 -07 000000579 INF: Y Motor: Encoder = 146483 = motor step 114439.8 = 71.5249 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:12.770 -07 000000579 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 01:09:12.770 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 967 ms, distance = 0.839 mm, average velocity = 0.867 mm/sec
17-03-18 01:09:13.720 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:13.720 -07 000000625 INF: FPGA: Recv YRDPOS 146483
17-03-18 01:09:13.730 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:13.730 -07 000000579 INF: Y Motor: Encoder = 146483 = motor step 114439.8 = 71.5249 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:13.750 -07 000000579 INF: Y Motor: After move to 71.532608, error = -0.007706, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:09:13.750 -07 000000579 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:09:13.750 -07 000000579 INF: Y Motor: Moved to 71.5249 after 2014 ms (table move)
17-03-18 01:09:13.750 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134626 mm (DAC = 29409)
17-03-18 01:09:13.760 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:13.760 -07 000000474 INF: FPGA: Recv ZSGSRD 30248
17-03-18 01:09:13.770 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:13.770 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:13.770 -07 000000579 INF: FPGA: Recv ZSGSRD 30247
17-03-18 01:09:13.780 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:13.790 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:13.790 -07 000000579 INF: FPGA: Recv ZSGSRD 30249
17-03-18 01:09:13.800 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:09:13.800 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:13.800 -07 000000579 INF: FPGA: Recv ZSGSRD 30241
17-03-18 01:09:13.810 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:13.820 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:13.820 -07 000000592 INF: FPGA: Recv ZSGSRD 30245
17-03-18 01:09:13.830 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:09:13.830 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:13.830 -07 000000474 INF: FPGA: Recv ZSGSRD 30251
17-03-18 01:09:13.840 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:13.850 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:13.850 -07 000000592 INF: FPGA: Recv ZSGSRD 30243
17-03-18 01:09:13.860 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:09:13.860 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:13.860 -07 000000579 INF: FPGA: Recv ZSGSRD 30249
17-03-18 01:09:13.870 -07 000000581 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:13.870 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:13.870 -07 000000444 INF: FPGA: Recv ZSGSRD 30245
17-03-18 01:09:13.880 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:13.880 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:13.880 -07 000000592 INF: FPGA: Recv ZSGSRD 30246
17-03-18 01:09:13.890 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:13.890 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:09:13.890 -07 000000444 INF: FPGA: Recv ZPIEZORD 26635
17-03-18 01:09:13.900 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:13.900 -07 000000581 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.488 V. Piezo Error = -8.0 V.
17-03-18 01:09:13.900 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30246 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30246 (-133.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30241 (-133.8 uncal um), Max = 30251 (-133.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:09:13.900 -07 000000581 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30246, posNoise = 5, negNoise = 5
17-03-18 01:09:13.900 -07 000000581 INF: Z Motor: After move to -0.134626, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:09:13.900 -07 000000581 INF: Z Motor: Settle wait time = 2013 ms, measure time = 142 ms (allowed 150 ms), total time = 2155 ms
17-03-18 01:09:13.900 -07 000000581 INF: Z Motor: Waiting extra 8 ms after reading position to reach expected total of 150 ms
17-03-18 01:09:13.910 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2399 ms
17-03-18 01:09:13.910 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:09:13.910 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:09:13.910 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:09:13.910 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:09:13.910 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:09:13.910 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:09:13.910 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:09:13.910 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:09:13.910 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:09:13.920 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:09:13.920 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:09:13.930 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:09:13.930 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:09:13.930 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:09:13.970 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:09:14.270 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:09:14.270 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:09:14.270 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:09:14.270 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 01:09:14.310 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:09:14.310 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 01:09:14.310 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:09:14.400 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:09:14.400 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:14.400 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:09:14.410 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:09:14.510 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:09:14.510 -07 000000625 INF: Autofocus start
17-03-18 01:09:14.510 -07 000000625 INF: MeasureProfile start
17-03-18 01:09:14.510 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:09:14.520 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:09:14.520 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:09:14.520 -07 000000625 INF: MeasureProfile done
17-03-18 01:09:14.520 -07 000000625 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 01:09:14.520 -07 000000625 INF: Autofocus finished
17-03-18 01:09:14.720 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:09:14.720 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:09:14.720 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52490234375, Z-position -0.134630072450837. ----------
17-03-18 01:09:14.720 -07 000000610 INF: Cycle	83	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:09:14.730 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27887, sync = True, waitForSettling = True)
17-03-18 01:09:14.730 -07 000000610 INF: Z Motor: Moving to -0.127659 mm, started at -0.134630 mm, distance = 6.97 um
17-03-18 01:09:14.740 -07 000000610 INF: FPGA: Xmit ZDACW 27887\n [Z Motor]
17-03-18 01:09:14.740 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:09:14.750 -07 000000610 INF: FPGA: 'ZDACW 27887' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:09:14.750 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:09:14.750 -07 000000592 INF: FPGA: Recv ZDACR 27887
17-03-18 01:09:14.760 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:14.760 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:09:14.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:14.910 -07 000000592 INF: FPGA: Recv ZSGSRD 29163
17-03-18 01:09:14.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:14.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:14.920 -07 000000590 INF: FPGA: Recv ZSGSRD 29164
17-03-18 01:09:14.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:14.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:14.930 -07 000000592 INF: FPGA: Recv ZSGSRD 29164
17-03-18 01:09:14.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:14.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:14.940 -07 000000444 INF: FPGA: Recv ZSGSRD 29156
17-03-18 01:09:14.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:14.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:14.950 -07 000000592 INF: FPGA: Recv ZSGSRD 29162
17-03-18 01:09:14.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:14.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:14.960 -07 000000579 INF: FPGA: Recv ZSGSRD 29166
17-03-18 01:09:14.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:14.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:14.970 -07 000000592 INF: FPGA: Recv ZSGSRD 29160
17-03-18 01:09:14.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:14.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:14.980 -07 000000581 INF: FPGA: Recv ZSGSRD 29162
17-03-18 01:09:14.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:14.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:14.990 -07 000000625 INF: FPGA: Recv ZSGSRD 29161
17-03-18 01:09:15.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:15.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:15.000 -07 000000579 INF: FPGA: Recv ZSGSRD 29163
17-03-18 01:09:15.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:15.010 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:09:15.010 -07 000000592 INF: FPGA: Recv ZPIEZORD 25212
17-03-18 01:09:15.020 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:15.020 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.255 V. Piezo Error = -8.7 V.
17-03-18 01:09:15.020 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29162 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29162 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29156 (-126.9 uncal um), Max = 29166 (-126.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:09:15.020 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29162, posNoise = 4, negNoise = 6
17-03-18 01:09:15.020 -07 000000610 INF: Z Motor: After move to -0.127659, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:09:15.020 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 01:09:15.020 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:09:15.020 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:09:15.020 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:09:15.020 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:09:15.020 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:09:15.020 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:09:15.020 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:09:15.020 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:09:15.020 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:09:15.020 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:09:15.020 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:09:15.020 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:09:15.020 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:09:15.020 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:09:15.030 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:09:15.030 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:09:15.040 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:09:15.040 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:09:15.040 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:09:15.040 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:09:15.050 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 3.996267,
17-03-18 01:09:15.050 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28063 150\n [Camera]
17-03-18 01:09:15.250 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 01:09:15.640 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:09:15.640 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:09:15.640 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:09:15.640 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:09:15.640 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:09:15.640 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:09:15.640 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:09:15.640 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:09:15.640 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:09:15.640 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 01:09:15.830 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28063 775
17-03-18 01:09:15.980 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:09:16.040 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:09:16.040 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:09:16.040 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:16.040 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:09:16.040 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:09:16.040 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:16.040 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:16.040 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:09:16.050 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:16.050 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:09:16.170 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:09:16.170 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:09:16.170 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:09:16.170 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:09:16.170 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:09:16.170 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:09:16.170 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:09:16.170 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:09:16.170 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:09:16.170 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 01:09:16.360 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:09:16.360 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:09:16.360 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28063 150' command took 3 ms to send, 1303 ms to get response, and 1315 ms overall
17-03-18 01:09:16.360 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:09:16.360 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52490234375, Z-Position -0.127666226489168. ------
17-03-18 01:09:16.360 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:09:16.360 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13447 mm
17-03-18 01:09:16.360 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:09:16.370 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:09:16.370 -07 000000474 INF: Y Motor: Moving to 72.3626 mm, started at 71.5249 mm, delta = 0.8377 mm
17-03-18 01:09:16.370 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:16.580 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 408 ms.
17-03-18 01:09:16.580 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:09:16.580 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:16.580 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 01:09:16.580 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:09:16.580 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:16.580 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:16.590 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:09:16.590 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 417 ms.
17-03-18 01:09:16.590 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 01:09:16.600 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29374, sync = True, waitForSettling = False)
17-03-18 01:09:16.600 -07 000000590 INF: Z Motor: Moving to -0.134466 mm, started at -0.127666 mm, distance = -6.80 um
17-03-18 01:09:16.600 -07 000000590 INF: FPGA: Xmit ZDACW 29374\n [Z Motor]
17-03-18 01:09:16.600 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:09:16.600 -07 000000487 INF: FPGA: Recv YRDPOS 146483
17-03-18 01:09:16.600 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:09:16.600 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 238 ms to get response, and 240 ms overall
17-03-18 01:09:16.600 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 228 ms to get response, and 237 ms overall
17-03-18 01:09:16.600 -07 000000474 INF: Y Motor: Encoder = 146483 = motor step 114439.8 = 71.5249 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:16.600 -07 000000474 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:09:16.600 -07 000000474 INF: Y Motor: Moving 1340 steps-16
17-03-18 01:09:16.610 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:09:16.610 -07 000000590 INF: FPGA: 'ZDACW 29374' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:09:16.620 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:09:16.630 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:09:16.630 -07 000000487 INF: FPGA: Recv ZDACR 29374
17-03-18 01:09:16.640 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:09:16.640 -07 000000590 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 01:09:16.820 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:09:16.820 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 213 ms overall
17-03-18 01:09:16.980 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 01:09:16.980 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 01:09:17.030 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:17.030 -07 000000625 INF: FPGA: Recv YRDPOS 148183
17-03-18 01:09:17.040 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:17.040 -07 000000474 INF: Y Motor: Encoder = 148183 = motor step 115768.0 = 72.3550 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:17.040 -07 000000474 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 01:09:17.040 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.216 mm/sec
17-03-18 01:09:17.230 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:09:17.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:09:17.990 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:17.990 -07 000000590 INF: FPGA: Recv YRDPOS 148183
17-03-18 01:09:18.000 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:18.000 -07 000000474 INF: Y Motor: Encoder = 148183 = motor step 115768.0 = 72.3550 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:18.020 -07 000000474 INF: Y Motor: After move to 72.362610, error = -0.007629, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:09:18.020 -07 000000474 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:09:18.020 -07 000000474 INF: Y Motor: Moved to 72.3550 after 1654 ms (table move)
17-03-18 01:09:18.020 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134466 mm (DAC = 29374)
17-03-18 01:09:18.020 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:18.030 -07 000000487 INF: FPGA: Recv ZSGSRD 30226
17-03-18 01:09:18.030 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:09:18.030 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:18.030 -07 000000487 INF: FPGA: Recv ZSGSRD 30218
17-03-18 01:09:18.040 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:09:18.040 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:18.040 -07 000000625 INF: FPGA: Recv ZSGSRD 30215
17-03-18 01:09:18.050 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:18.050 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:18.050 -07 000000590 INF: FPGA: Recv ZSGSRD 30217
17-03-18 01:09:18.060 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:18.060 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:18.060 -07 000000474 INF: FPGA: Recv ZSGSRD 30224
17-03-18 01:09:18.070 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:18.070 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:18.070 -07 000000625 INF: FPGA: Recv ZSGSRD 30227
17-03-18 01:09:18.080 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:18.080 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:18.080 -07 000000590 INF: FPGA: Recv ZSGSRD 30224
17-03-18 01:09:18.090 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:18.090 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:18.090 -07 000000474 INF: FPGA: Recv ZSGSRD 30222
17-03-18 01:09:18.100 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:18.100 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:18.100 -07 000000625 INF: FPGA: Recv ZSGSRD 30221
17-03-18 01:09:18.110 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:18.110 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:18.110 -07 000000590 INF: FPGA: Recv ZSGSRD 30217
17-03-18 01:09:18.120 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:09:18.120 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:09:18.120 -07 000000625 INF: FPGA: Recv ZPIEZORD 26602
17-03-18 01:09:18.130 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:18.130 -07 000000444 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.482 V. Piezo Error = -8.0 V.
17-03-18 01:09:18.130 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30221 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30222 (-133.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30215 (-133.6 uncal um), Max = 30227 (-133.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:09:18.130 -07 000000444 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30221, posNoise = 6, negNoise = 6
17-03-18 01:09:18.130 -07 000000444 INF: Z Motor: After move to -0.134466, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:09:18.130 -07 000000444 INF: Z Motor: Settle wait time = 1424 ms, measure time = 102 ms (allowed 150 ms), total time = 1526 ms
17-03-18 01:09:18.130 -07 000000444 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:09:18.180 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1811 ms
17-03-18 01:09:18.180 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:09:18.180 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:09:18.180 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:09:18.180 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:09:18.180 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:09:18.180 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:09:18.180 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:09:18.180 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:09:18.180 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:09:18.190 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:09:18.190 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:09:18.190 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:09:18.190 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:09:18.200 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:09:18.250 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:09:18.540 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:09:18.540 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:09:18.540 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:09:18.540 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 01:09:18.580 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:09:18.580 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:09:18.580 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:09:18.660 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:09:18.660 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:18.660 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:09:18.660 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:09:18.680 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:09:18.680 -07 000000474 INF: Autofocus start
17-03-18 01:09:18.680 -07 000000474 INF: MeasureProfile start
17-03-18 01:09:18.680 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:09:18.690 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:09:18.690 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:09:18.690 -07 000000474 INF: MeasureProfile done
17-03-18 01:09:18.690 -07 000000474 INF: X=-96  Z correction [um]=-0.4707136
17-03-18 01:09:18.690 -07 000000474 INF: Autofocus finished
17-03-18 01:09:18.890 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:09:18.890 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:09:18.890 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35498046875, Z-position -0.134469467147293. ----------
17-03-18 01:09:18.890 -07 000000610 INF: Cycle	83	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:09:18.900 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27784, sync = True, waitForSettling = True)
17-03-18 01:09:18.900 -07 000000610 INF: Z Motor: Moving to -0.127187 mm, started at -0.134469 mm, distance = 7.28 um
17-03-18 01:09:18.900 -07 000000610 INF: FPGA: Xmit ZDACW 27784\n [Z Motor]
17-03-18 01:09:18.900 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:09:18.910 -07 000000610 INF: FPGA: 'ZDACW 27784' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:18.910 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:09:18.910 -07 000000590 INF: FPGA: Recv ZDACR 27784
17-03-18 01:09:18.920 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:18.920 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:09:19.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:19.070 -07 000000461 INF: FPGA: Recv ZSGSRD 29084
17-03-18 01:09:19.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:19.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:19.080 -07 000000590 INF: FPGA: Recv ZSGSRD 29092
17-03-18 01:09:19.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:19.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:19.090 -07 000000487 INF: FPGA: Recv ZSGSRD 29089
17-03-18 01:09:19.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:19.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:19.100 -07 000000590 INF: FPGA: Recv ZSGSRD 29086
17-03-18 01:09:19.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:19.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:19.110 -07 000000487 INF: FPGA: Recv ZSGSRD 29089
17-03-18 01:09:19.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:19.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:19.120 -07 000000487 INF: FPGA: Recv ZSGSRD 29085
17-03-18 01:09:19.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:19.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:19.130 -07 000000487 INF: FPGA: Recv ZSGSRD 29087
17-03-18 01:09:19.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:19.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:19.140 -07 000000487 INF: FPGA: Recv ZSGSRD 29087
17-03-18 01:09:19.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:19.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:19.150 -07 000000487 INF: FPGA: Recv ZSGSRD 29091
17-03-18 01:09:19.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:19.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:19.170 -07 000000585 INF: FPGA: Recv ZSGSRD 29084
17-03-18 01:09:19.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:09:19.180 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:09:19.180 -07 000000585 INF: FPGA: Recv ZPIEZORD 25157
17-03-18 01:09:19.190 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:19.190 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.240 V. Piezo Error = -8.7 V.
17-03-18 01:09:19.190 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.2 um, Read 10 ADC samples: Avg = 29087 (-126.4 uncal um), Error = 0.8 uncal um, Median = 29087 (-126.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29084 (-126.4 uncal um), Max = 29092 (-126.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:09:19.190 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29087, posNoise = 5, negNoise = 3
17-03-18 01:09:19.190 -07 000000610 INF: Z Motor: After move to -0.127187, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:09:19.190 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 01:09:19.190 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:09:19.190 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:09:19.190 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:09:19.190 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:09:19.190 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:09:19.190 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:09:19.190 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:09:19.190 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:09:19.190 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:09:19.190 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:09:19.190 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:09:19.190 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:09:19.190 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:09:19.190 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:09:19.200 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:09:19.200 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:09:19.210 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:09:19.210 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:09:19.210 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 01:09:19.210 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:09:19.230 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27961 150\n [Camera]
17-03-18 01:09:19.430 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:09:19.810 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:09:19.820 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:09:19.820 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:09:19.820 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:09:19.820 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 01:09:19.820 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:09:19.820 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:09:19.820 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:09:19.820 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:09:19.820 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:09:20.010 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27961 775
17-03-18 01:09:20.160 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:09:20.220 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:09:20.220 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:09:20.220 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:20.220 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:09:20.220 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:09:20.220 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:20.220 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:09:20.220 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:09:20.220 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:20.230 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:09:20.350 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:09:20.350 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:09:20.350 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:09:20.350 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:09:20.350 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 01:09:20.350 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:09:20.350 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:09:20.350 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:09:20.350 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:09:20.350 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 01:09:20.420 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.000345,
17-03-18 01:09:20.540 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:09:20.540 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:09:20.540 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27961 150' command took 2 ms to send, 1302 ms to get response, and 1324 ms overall
17-03-18 01:09:20.540 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:09:20.540 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35498046875, Z-Position -0.127184410578536. ------
17-03-18 01:09:20.540 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:09:20.540 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13400 mm
17-03-18 01:09:20.540 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:09:20.540 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:09:20.540 -07 000000629 INF: Y Motor: Moving to 73.1926 mm, started at 72.3550 mm, delta = 0.8376 mm
17-03-18 01:09:20.550 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:20.750 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:09:20.750 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:09:20.750 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:09:20.750 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:20.750 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:09:20.750 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:20.750 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:20.750 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:09:20.750 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:09:20.760 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:09:20.770 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:09:20.770 -07 000000625 INF: FPGA: Recv YRDPOS 148183
17-03-18 01:09:20.770 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 223 ms to get response, and 225 ms overall
17-03-18 01:09:20.770 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29271, sync = True, waitForSettling = False)
17-03-18 01:09:20.770 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:09:20.770 -07 000000590 INF: Z Motor: Moving to -0.133994 mm, started at -0.127184 mm, distance = -6.81 um
17-03-18 01:09:20.770 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 213 ms to get response, and 223 ms overall
17-03-18 01:09:20.770 -07 000000629 INF: Y Motor: Encoder = 148183 = motor step 115768.0 = 72.3550 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:20.770 -07 000000629 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:09:20.770 -07 000000629 INF: Y Motor: Moving 1340 steps-16
17-03-18 01:09:20.780 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:09:20.790 -07 000000590 INF: FPGA: Xmit ZDACW 29271\n [Z Motor]
17-03-18 01:09:20.790 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:09:20.800 -07 000000590 INF: FPGA: 'ZDACW 29271' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:09:20.800 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:09:20.800 -07 000000625 INF: FPGA: Recv ZDACR 29271
17-03-18 01:09:20.810 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:20.810 -07 000000590 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 01:09:20.970 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:09:20.970 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 01:09:21.150 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:09:21.150 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 01:09:21.200 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:21.200 -07 000000590 INF: FPGA: Recv YRDPOS 149877
17-03-18 01:09:21.210 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:21.210 -07 000000629 INF: Y Motor: Encoder = 149877 = motor step 117091.4 = 73.1821 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:21.210 -07 000000629 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 01:09:21.210 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.838 mm, average velocity = 2.187 mm/sec
17-03-18 01:09:22.160 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:22.160 -07 000000444 INF: FPGA: Recv YRDPOS 149877
17-03-18 01:09:22.170 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:22.170 -07 000000629 INF: Y Motor: Encoder = 149877 = motor step 117091.4 = 73.1821 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:22.190 -07 000000629 INF: Y Motor: After move to 73.192604, error = -0.010475, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:09:22.190 -07 000000629 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:09:22.190 -07 000000629 INF: Y Motor: Moved to 73.1821 after 1646 ms (table move)
17-03-18 01:09:22.190 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133994 mm (DAC = 29271)
17-03-18 01:09:22.200 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:22.200 -07 000000625 INF: FPGA: Recv ZSGSRD 30152
17-03-18 01:09:22.210 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:22.210 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:22.210 -07 000000444 INF: FPGA: Recv ZSGSRD 30149
17-03-18 01:09:22.220 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:22.220 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:22.220 -07 000000590 INF: FPGA: Recv ZSGSRD 30145
17-03-18 01:09:22.230 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:22.230 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:22.230 -07 000000629 INF: FPGA: Recv ZSGSRD 30143
17-03-18 01:09:22.230 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:09:22.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:09:22.240 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:22.240 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:22.240 -07 000000629 INF: FPGA: Recv ZSGSRD 30148
17-03-18 01:09:22.250 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:22.250 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:22.250 -07 000000629 INF: FPGA: Recv ZSGSRD 30149
17-03-18 01:09:22.260 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:22.260 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:22.260 -07 000000590 INF: FPGA: Recv ZSGSRD 30150
17-03-18 01:09:22.270 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:22.270 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:22.270 -07 000000444 INF: FPGA: Recv ZSGSRD 30149
17-03-18 01:09:22.280 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:22.280 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:22.280 -07 000000444 INF: FPGA: Recv ZSGSRD 30155
17-03-18 01:09:22.290 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:22.290 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:22.290 -07 000000625 INF: FPGA: Recv ZSGSRD 30147
17-03-18 01:09:22.300 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:22.300 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:09:22.300 -07 000000625 INF: FPGA: Recv ZPIEZORD 26540
17-03-18 01:09:22.310 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:22.310 -07 000000487 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.466 V. Piezo Error = -8.0 V.
17-03-18 01:09:22.310 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30149 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30149 (-133.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30143 (-133.2 uncal um), Max = 30155 (-133.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:09:22.310 -07 000000487 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30149, posNoise = 6, negNoise = 6
17-03-18 01:09:22.310 -07 000000487 INF: Z Motor: After move to -0.133994, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:09:22.310 -07 000000487 INF: Z Motor: Settle wait time = 1425 ms, measure time = 111 ms (allowed 150 ms), total time = 1536 ms
17-03-18 01:09:22.310 -07 000000487 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:09:22.350 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1802 ms
17-03-18 01:09:22.350 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:09:22.350 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:09:22.350 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:09:22.350 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:09:22.350 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:09:22.350 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:09:22.350 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:09:22.350 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:09:22.350 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:09:22.360 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:09:22.360 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:09:22.360 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:09:22.360 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:09:22.370 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:09:22.410 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:09:22.710 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:09:22.710 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:09:22.710 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:09:22.710 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start.
17-03-18 01:09:22.750 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:09:22.750 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 01:09:22.750 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 01:09:22.830 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 01:09:22.830 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:22.830 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:09:22.830 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:09:22.850 -07 000000444 INF: Autofocus start
17-03-18 01:09:22.850 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:09:22.850 -07 000000444 INF: MeasureProfile start
17-03-18 01:09:22.850 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:09:22.860 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:09:22.860 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:09:22.860 -07 000000444 INF: MeasureProfile done
17-03-18 01:09:22.860 -07 000000444 INF: X=-18  Z correction [um]=-0.09102372
17-03-18 01:09:22.860 -07 000000444 INF: Autofocus finished
17-03-18 01:09:23.060 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:09:23.060 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:09:23.060 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.18212890625, Z-position -0.134006923873086. ----------
17-03-18 01:09:23.060 -07 000000610 INF: Cycle	83	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:09:23.070 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27764, sync = True, waitForSettling = True)
17-03-18 01:09:23.070 -07 000000610 INF: Z Motor: Moving to -0.127095 mm, started at -0.134007 mm, distance = 6.91 um
17-03-18 01:09:23.070 -07 000000610 INF: FPGA: Xmit ZDACW 27764\n [Z Motor]
17-03-18 01:09:23.070 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:09:23.080 -07 000000610 INF: FPGA: 'ZDACW 27764' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:09:23.080 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:09:23.080 -07 000000590 INF: FPGA: Recv ZDACR 27764
17-03-18 01:09:23.090 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:23.090 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:09:23.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:23.240 -07 000000581 INF: FPGA: Recv ZSGSRD 29075
17-03-18 01:09:23.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 5 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:23.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:23.250 -07 000000625 INF: FPGA: Recv ZSGSRD 29079
17-03-18 01:09:23.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:23.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:23.260 -07 000000590 INF: FPGA: Recv ZSGSRD 29070
17-03-18 01:09:23.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:23.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:23.270 -07 000000581 INF: FPGA: Recv ZSGSRD 29071
17-03-18 01:09:23.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:23.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:23.280 -07 000000487 INF: FPGA: Recv ZSGSRD 29077
17-03-18 01:09:23.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:23.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:23.290 -07 000000579 INF: FPGA: Recv ZSGSRD 29078
17-03-18 01:09:23.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:23.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:23.300 -07 000000444 INF: FPGA: Recv ZSGSRD 29069
17-03-18 01:09:23.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:23.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:23.310 -07 000000590 INF: FPGA: Recv ZSGSRD 29067
17-03-18 01:09:23.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:23.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:23.320 -07 000000474 INF: FPGA: Recv ZSGSRD 29073
17-03-18 01:09:23.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:23.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:23.330 -07 000000590 INF: FPGA: Recv ZSGSRD 29072
17-03-18 01:09:23.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:23.340 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:09:23.340 -07 000000581 INF: FPGA: Recv ZPIEZORD 25141
17-03-18 01:09:23.350 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:23.350 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.237 V. Piezo Error = -8.7 V.
17-03-18 01:09:23.350 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.1 um, Read 10 ADC samples: Avg = 29073 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29072 (-126.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29067 (-126.3 uncal um), Max = 29079 (-126.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:09:23.350 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29073, posNoise = 6, negNoise = 6
17-03-18 01:09:23.350 -07 000000610 INF: Z Motor: After move to -0.127095, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:09:23.350 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:09:23.350 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:09:23.350 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:09:23.350 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:09:23.350 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:09:23.350 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:09:23.350 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:09:23.350 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:09:23.350 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:09:23.350 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:09:23.350 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:09:23.350 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:09:23.350 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:09:23.360 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:09:23.360 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:09:23.360 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:09:23.360 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:09:23.370 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:09:23.370 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 01:09:23.370 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:09:23.370 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 01:09:23.380 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27941 150\n [Camera]
17-03-18 01:09:23.580 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:09:23.970 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:09:23.970 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:09:23.970 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:09:23.970 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:09:23.970 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 01:09:23.970 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:09:23.970 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:09:23.970 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:09:23.970 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:09:23.970 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 01:09:24.160 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27941 775
17-03-18 01:09:24.310 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:09:24.350 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 01:09:24.350 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 01:09:24.350 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:24.360 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:09:24.360 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:09:24.360 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:24.360 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:24.360 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:24.360 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:09:24.370 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:09:24.500 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:09:24.500 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:09:24.500 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:09:24.500 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:09:24.500 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 01:09:24.500 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:09:24.500 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:09:24.500 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:09:24.500 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:09:24.500 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 01:09:24.690 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:09:24.690 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:09:24.690 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27941 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-18 01:09:24.690 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:09:24.690 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.18212890625, Z-Position -0.127094471608551. ------
17-03-18 01:09:24.690 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13390 mm
17-03-18 01:09:24.690 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:09:24.700 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:09:24.700 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:09:24.700 -07 000000461 INF: Y Motor: Moving to 74.0226 mm, started at 73.1821 mm, delta = 0.8405 mm
17-03-18 01:09:24.840 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:24.850 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:09:24.850 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 150 ms overall
17-03-18 01:09:24.850 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29251, sync = True, waitForSettling = False)
17-03-18 01:09:24.850 -07 000000444 INF: Z Motor: Moving to -0.133902 mm, started at -0.127094 mm, distance = -6.81 um
17-03-18 01:09:24.860 -07 000000444 INF: FPGA: Xmit ZDACW 29251\n [Z Motor]
17-03-18 01:09:24.870 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:09:24.920 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 419 ms.
17-03-18 01:09:24.920 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 420 ms.
17-03-18 01:09:24.920 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:24.920 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 417 ms.
17-03-18 01:09:24.920 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:09:24.920 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:24.920 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:24.920 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:09:24.920 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 427 ms.
17-03-18 01:09:24.930 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 428 ms.
17-03-18 01:09:24.940 -07 000000592 INF: FPGA: Recv YRDPOS 149877
17-03-18 01:09:24.940 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:09:24.940 -07 000000444 INF: FPGA: 'ZDACW 29251' command took 0 ms to send, 73 ms to get response, and 92 ms overall
17-03-18 01:09:24.940 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:09:24.940 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 83 ms to get response, and 240 ms overall
17-03-18 01:09:24.940 -07 000000461 INF: Y Motor: Encoder = 149877 = motor step 117091.4 = 73.1821 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:24.940 -07 000000461 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:09:24.940 -07 000000461 INF: Y Motor: Moving 1345 steps-21
17-03-18 01:09:24.940 -07 000000592 INF: FPGA: Recv ZDACR 29251
17-03-18 01:09:24.950 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:09:24.950 -07 000000444 INF: Z Motor: MoveAbsStepped took 99 ms (did NOT wait for settling yet))
17-03-18 01:09:24.950 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:09:25.070 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:09:25.070 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall
17-03-18 01:09:25.320 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:09:25.320 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 01:09:25.360 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:25.360 -07 000000487 INF: FPGA: Recv YRDPOS 151580
17-03-18 01:09:25.370 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:09:25.370 -07 000000461 INF: Y Motor: Encoder = 151580 = motor step 118421.9 = 74.0137 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:25.370 -07 000000461 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:09:25.370 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.840 mm, average velocity = 2.194 mm/sec
17-03-18 01:09:25.780 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.011254,
17-03-18 01:09:26.320 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:26.320 -07 000000592 INF: FPGA: Recv YRDPOS 151581
17-03-18 01:09:26.330 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:26.330 -07 000000461 INF: Y Motor: Encoder = 151581 = motor step 118422.7 = 74.0142 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:26.340 -07 000000461 INF: Y Motor: After move to 74.022606, error = -0.008446, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:09:26.340 -07 000000461 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:09:26.340 -07 000000461 INF: Y Motor: Moved to 74.0142 after 1646 ms (table move)
17-03-18 01:09:26.350 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133902 mm (DAC = 29251)
17-03-18 01:09:26.350 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:26.350 -07 000000461 INF: FPGA: Recv ZSGSRD 30138
17-03-18 01:09:26.360 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:09:26.360 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:26.360 -07 000000487 INF: FPGA: Recv ZSGSRD 30128
17-03-18 01:09:26.370 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:26.370 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:26.370 -07 000000592 INF: FPGA: Recv ZSGSRD 30132
17-03-18 01:09:26.380 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:26.380 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:26.380 -07 000000461 INF: FPGA: Recv ZSGSRD 30137
17-03-18 01:09:26.390 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:26.390 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:26.390 -07 000000629 INF: FPGA: Recv ZSGSRD 30135
17-03-18 01:09:26.400 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:26.400 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:26.400 -07 000000444 INF: FPGA: Recv ZSGSRD 30137
17-03-18 01:09:26.410 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:26.410 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:26.410 -07 000000461 INF: FPGA: Recv ZSGSRD 30134
17-03-18 01:09:26.420 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:26.420 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:26.420 -07 000000461 INF: FPGA: Recv ZSGSRD 30133
17-03-18 01:09:26.430 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:26.430 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:26.430 -07 000000487 INF: FPGA: Recv ZSGSRD 30130
17-03-18 01:09:26.440 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:26.440 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:26.440 -07 000000592 INF: FPGA: Recv ZSGSRD 30135
17-03-18 01:09:26.450 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:26.450 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:09:26.450 -07 000000461 INF: FPGA: Recv ZPIEZORD 26477
17-03-18 01:09:26.460 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:26.460 -07 000000590 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.463 V. Piezo Error = -8.1 V.
17-03-18 01:09:26.460 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30134 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30134 (-133.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30128 (-133.1 uncal um), Max = 30138 (-133.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:09:26.460 -07 000000590 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30134, posNoise = 4, negNoise = 6
17-03-18 01:09:26.460 -07 000000590 INF: Z Motor: After move to -0.133902, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:09:26.460 -07 000000590 INF: Z Motor: Settle wait time = 1502 ms, measure time = 108 ms (allowed 150 ms), total time = 1610 ms
17-03-18 01:09:26.460 -07 000000590 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:09:26.510 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1810 ms
17-03-18 01:09:26.510 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:09:26.510 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:09:26.510 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:09:26.510 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:09:26.510 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:09:26.510 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:09:26.510 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:09:26.510 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:09:26.510 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:09:26.520 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:09:26.520 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:09:26.530 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:09:26.530 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:09:26.530 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:09:26.580 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:09:26.880 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:09:26.880 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:09:26.880 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:09:26.880 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 01:09:26.920 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:09:26.920 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:09:26.920 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:09:26.990 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:09:26.990 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:26.990 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:09:26.990 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:09:27.020 -07 000000590 INF: Autofocus start
17-03-18 01:09:27.020 -07 000000590 INF: MeasureProfile start
17-03-18 01:09:27.020 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:09:27.020 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:09:27.030 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:09:27.030 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:09:27.030 -07 000000590 INF: MeasureProfile done
17-03-18 01:09:27.030 -07 000000590 INF: X=-102  Z correction [um]=-0.4999205
17-03-18 01:09:27.030 -07 000000590 INF: Autofocus finished
17-03-18 01:09:27.230 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:09:27.230 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:09:27.230 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 209 ms overall
17-03-18 01:09:27.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:09:27.240 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.01416015625, Z-position -0.13391056069096. ----------
17-03-18 01:09:27.250 -07 000000610 INF: Cycle	83	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:09:27.250 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27655, sync = True, waitForSettling = True)
17-03-18 01:09:27.250 -07 000000610 INF: Z Motor: Moving to -0.126596 mm, started at -0.133911 mm, distance = 7.31 um
17-03-18 01:09:27.250 -07 000000610 INF: FPGA: Xmit ZDACW 27655\n [Z Motor]
17-03-18 01:09:27.250 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:09:27.260 -07 000000610 INF: FPGA: 'ZDACW 27655' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:09:27.260 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:09:27.260 -07 000000579 INF: FPGA: Recv ZDACR 27655
17-03-18 01:09:27.270 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:27.270 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:09:27.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:27.420 -07 000000592 INF: FPGA: Recv ZSGSRD 28995
17-03-18 01:09:27.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:27.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:27.430 -07 000000579 INF: FPGA: Recv ZSGSRD 28999
17-03-18 01:09:27.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:27.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:27.440 -07 000000467 INF: FPGA: Recv ZSGSRD 28994
17-03-18 01:09:27.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:27.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:27.450 -07 000000461 INF: FPGA: Recv ZSGSRD 28999
17-03-18 01:09:27.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:27.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:27.460 -07 000000474 INF: FPGA: Recv ZSGSRD 28998
17-03-18 01:09:27.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:27.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:27.470 -07 000000467 INF: FPGA: Recv ZSGSRD 28994
17-03-18 01:09:27.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:27.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:27.480 -07 000000474 INF: FPGA: Recv ZSGSRD 29001
17-03-18 01:09:27.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:27.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:27.490 -07 000000585 INF: FPGA: Recv ZSGSRD 28995
17-03-18 01:09:27.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:27.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:27.500 -07 000000629 INF: FPGA: Recv ZSGSRD 28999
17-03-18 01:09:27.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:27.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:27.510 -07 000000444 INF: FPGA: Recv ZSGSRD 28995
17-03-18 01:09:27.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:27.520 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:09:27.520 -07 000000581 INF: FPGA: Recv ZPIEZORD 25040
17-03-18 01:09:27.530 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:27.530 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.220 V. Piezo Error = -8.7 V.
17-03-18 01:09:27.530 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 28997 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28996 (-125.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 28994 (-125.8 uncal um), Max = 29001 (-125.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:09:27.530 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28997, posNoise = 4, negNoise = 3
17-03-18 01:09:27.530 -07 000000610 INF: Z Motor: After move to -0.126596, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:09:27.530 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:09:27.530 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:09:27.530 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:09:27.530 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:09:27.530 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:09:27.530 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:09:27.530 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:09:27.530 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:09:27.530 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:09:27.530 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:09:27.530 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:09:27.540 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:09:27.540 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:09:27.540 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:09:27.540 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:09:27.540 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:09:27.540 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:09:27.550 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:09:27.550 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:09:27.550 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:09:27.550 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:09:27.550 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27831 150\n [Camera]
17-03-18 01:09:27.750 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:09:28.140 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:09:28.140 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:09:28.140 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:09:28.140 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:09:28.140 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:09:28.150 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:09:28.150 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:09:28.150 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:09:28.160 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:09:28.160 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:09:28.330 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27831 775
17-03-18 01:09:28.480 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:09:28.550 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:09:28.550 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:09:28.550 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:28.550 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:09:28.550 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:09:28.550 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:28.560 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:09:28.560 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:09:28.560 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 01:09:28.560 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 01:09:28.680 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-18 01:09:28.680 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-18 01:09:28.680 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:09:28.680 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:09:28.680 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:09:28.680 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:09:28.800 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:09:28.800 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 01:09:28.810 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:09:28.810 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 01:09:28.860 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:09:28.860 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:09:28.860 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27831 150' command took 2 ms to send, 1309 ms to get response, and 1313 ms overall
17-03-18 01:09:28.870 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:09:28.870 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.01416015625, Z-Position -0.126606231485777. ------
17-03-18 01:09:28.870 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13340 mm
17-03-18 01:09:28.870 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:09:28.870 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:09:28.870 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:09:28.870 -07 000000585 INF: Y Motor: Moving to 74.8526 mm, started at 74.0142 mm, delta = 0.8384 mm
17-03-18 01:09:28.870 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29142, sync = True, waitForSettling = False)
17-03-18 01:09:28.870 -07 000000590 INF: Z Motor: Moving to -0.133404 mm, started at -0.126606 mm, distance = -6.80 um
17-03-18 01:09:28.870 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:09:28.880 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:09:28.880 -07 000000590 INF: FPGA: Xmit ZDACW 29142\n [Z Motor]
17-03-18 01:09:28.880 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:09:28.890 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:28.890 -07 000000590 INF: FPGA: 'ZDACW 29142' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:09:28.890 -07 000000467 INF: FPGA: Recv YRDPOS 151581
17-03-18 01:09:28.900 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:09:28.900 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:09:28.900 -07 000000585 INF: Y Motor: Encoder = 151581 = motor step 118422.7 = 74.0142 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:28.900 -07 000000585 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:09:28.900 -07 000000585 INF: Y Motor: Moving 1342 steps-18
17-03-18 01:09:28.910 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:09:28.910 -07 000000461 INF: FPGA: Recv ZDACR 29142
17-03-18 01:09:28.920 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:09:28.920 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:09:28.920 -07 000000590 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 01:09:29.100 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:09:29.100 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:09:29.200 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:09:29.210 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:09:29.210 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:29.210 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:09:29.210 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:09:29.210 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:29.210 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:09:29.210 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:09:29.210 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-18 01:09:29.220 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 536 ms.
17-03-18 01:09:29.290 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 01:09:29.290 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:09:29.320 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:29.320 -07 000000592 INF: FPGA: Recv YRDPOS 153268
17-03-18 01:09:29.330 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:09:29.330 -07 000000585 INF: Y Motor: Encoder = 153268 = motor step 119740.6 = 74.8379 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:29.330 -07 000000585 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:09:29.330 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.112 mm/sec
17-03-18 01:09:30.280 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:30.280 -07 000000461 INF: FPGA: Recv YRDPOS 153268
17-03-18 01:09:30.290 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:30.290 -07 000000585 INF: Y Motor: Encoder = 153268 = motor step 119740.6 = 74.8379 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:30.300 -07 000000585 INF: Y Motor: After move to 74.852608, error = -0.014717, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:09:30.300 -07 000000585 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:09:30.300 -07 000000585 INF: Y Motor: Moved to 74.8379 after 1431 ms (table move)
17-03-18 01:09:30.310 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133404 mm (DAC = 29142)
17-03-18 01:09:30.310 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:30.310 -07 000000592 INF: FPGA: Recv ZSGSRD 30062
17-03-18 01:09:30.320 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:09:30.320 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:30.320 -07 000000437 INF: FPGA: Recv ZSGSRD 30065
17-03-18 01:09:30.330 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:30.330 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:30.330 -07 000000592 INF: FPGA: Recv ZSGSRD 30060
17-03-18 01:09:30.340 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:30.340 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:30.340 -07 000000592 INF: FPGA: Recv ZSGSRD 30057
17-03-18 01:09:30.350 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:30.350 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:30.350 -07 000000592 INF: FPGA: Recv ZSGSRD 30062
17-03-18 01:09:30.360 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:30.360 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:30.360 -07 000000585 INF: FPGA: Recv ZSGSRD 30054
17-03-18 01:09:30.370 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:30.370 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:30.370 -07 000000585 INF: FPGA: Recv ZSGSRD 30052
17-03-18 01:09:30.380 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:30.380 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:30.380 -07 000000585 INF: FPGA: Recv ZSGSRD 30047
17-03-18 01:09:30.390 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:30.390 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:30.390 -07 000000585 INF: FPGA: Recv ZSGSRD 30055
17-03-18 01:09:30.400 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:30.400 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:30.400 -07 000000437 INF: FPGA: Recv ZSGSRD 30058
17-03-18 01:09:30.410 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:30.410 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:09:30.410 -07 000000461 INF: FPGA: Recv ZPIEZORD 26455
17-03-18 01:09:30.420 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:30.420 -07 000000444 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.447 V. Piezo Error = -8.0 V.
17-03-18 01:09:30.420 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30057 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30058 (-132.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30047 (-132.6 uncal um), Max = 30065 (-132.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:09:30.420 -07 000000444 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30057, posNoise = 8, negNoise = 10
17-03-18 01:09:30.420 -07 000000444 INF: Z Motor: After move to -0.133404, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:09:30.420 -07 000000444 INF: Z Motor: Settle wait time = 1435 ms, measure time = 108 ms (allowed 150 ms), total time = 1543 ms
17-03-18 01:09:30.420 -07 000000444 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:09:30.470 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 01:09:30.470 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:09:30.470 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:09:30.470 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:09:30.470 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:09:30.470 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:09:30.470 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:09:30.470 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:09:30.470 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:09:30.470 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:09:30.480 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:09:30.480 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:09:30.490 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:09:30.490 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 01:09:30.490 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:09:30.530 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:09:30.830 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:09:30.830 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:09:30.830 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:09:30.840 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 01:09:30.870 -07 000000592 INF: FPGA: Recv @CAMSNAP 381
17-03-18 01:09:30.870 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 01:09:30.870 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 01:09:30.950 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:09:30.950 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:30.950 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:09:30.950 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:09:30.970 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:09:30.970 -07 000000592 INF: Autofocus start
17-03-18 01:09:30.970 -07 000000592 INF: MeasureProfile start
17-03-18 01:09:30.970 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:09:30.980 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:09:30.980 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:09:30.980 -07 000000592 INF: MeasureProfile done
17-03-18 01:09:30.980 -07 000000592 INF: X=-176  Z correction [um]=-0.8601391
17-03-18 01:09:30.980 -07 000000592 INF: Autofocus finished
17-03-18 01:09:31.140 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.003063,
17-03-18 01:09:31.180 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:09:31.180 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:09:31.180 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.837890625, Z-position -0.133415896356044. ----------
17-03-18 01:09:31.180 -07 000000610 INF: Cycle	83	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:09:31.190 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27467, sync = True, waitForSettling = True)
17-03-18 01:09:31.190 -07 000000610 INF: Z Motor: Moving to -0.125736 mm, started at -0.133416 mm, distance = 7.68 um
17-03-18 01:09:31.190 -07 000000610 INF: FPGA: Xmit ZDACW 27467\n [Z Motor]
17-03-18 01:09:31.190 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 01:09:31.200 -07 000000610 INF: FPGA: 'ZDACW 27467' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:09:31.200 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:09:31.200 -07 000000579 INF: FPGA: Recv ZDACR 27467
17-03-18 01:09:31.210 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:31.210 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:09:31.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:31.360 -07 000000444 INF: FPGA: Recv ZSGSRD 28869
17-03-18 01:09:31.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:09:31.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:31.370 -07 000000437 INF: FPGA: Recv ZSGSRD 28871
17-03-18 01:09:31.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:31.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:31.380 -07 000000592 INF: FPGA: Recv ZSGSRD 28862
17-03-18 01:09:31.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:31.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:31.390 -07 000000437 INF: FPGA: Recv ZSGSRD 28861
17-03-18 01:09:31.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:31.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:31.400 -07 000000444 INF: FPGA: Recv ZSGSRD 28864
17-03-18 01:09:31.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:31.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:31.410 -07 000000437 INF: FPGA: Recv ZSGSRD 28867
17-03-18 01:09:31.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:31.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:31.420 -07 000000579 INF: FPGA: Recv ZSGSRD 28862
17-03-18 01:09:31.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:31.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:31.430 -07 000000461 INF: FPGA: Recv ZSGSRD 28858
17-03-18 01:09:31.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:31.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:31.440 -07 000000579 INF: FPGA: Recv ZSGSRD 28864
17-03-18 01:09:31.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:31.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:09:31.450 -07 000000444 INF: FPGA: Recv ZSGSRD 28867
17-03-18 01:09:31.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:31.460 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:09:31.460 -07 000000461 INF: FPGA: Recv ZPIEZORD 24847
17-03-18 01:09:31.470 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:31.470 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 41.9 V, since DAC is at 4.191 V. Piezo Error = -8.8 V.
17-03-18 01:09:31.470 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -125.7 um, Read 10 ADC samples: Avg = 28864 (-125.0 uncal um), Error = 0.8 uncal um, Median = 28864 (-125.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 28858 (-124.9 uncal um), Max = 28871 (-125.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:09:31.470 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28864, posNoise = 7, negNoise = 6
17-03-18 01:09:31.470 -07 000000610 INF: Z Motor: After move to -0.125736, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:09:31.470 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:09:31.470 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:09:31.470 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:09:31.470 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:09:31.470 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:09:31.470 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:09:31.470 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:09:31.470 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:09:31.470 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:09:31.470 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:09:31.470 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:09:31.470 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:09:31.470 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:09:31.480 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:09:31.480 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:09:31.480 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:09:31.480 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:09:31.490 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:09:31.490 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:09:31.490 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:09:31.490 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:09:31.490 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27644 150\n [Camera]
17-03-18 01:09:31.690 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:09:32.080 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:09:32.080 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:09:32.080 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:09:32.080 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:09:32.080 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 01:09:32.090 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:09:32.090 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:09:32.090 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:09:32.090 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:09:32.090 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 01:09:32.230 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:09:32.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 82. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:09:32.280 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27644 775
17-03-18 01:09:32.430 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:09:32.480 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:09:32.480 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:09:32.480 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:32.490 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:09:32.490 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:09:32.490 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:32.490 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:32.490 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:09:32.490 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:09:32.500 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:09:32.610 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:09:32.610 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:09:32.620 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:09:32.620 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:09:32.620 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:09:32.620 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:09:32.620 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:09:32.620 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:09:32.620 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:09:32.620 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:09:32.810 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:09:32.810 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:09:32.810 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27644 150' command took 2 ms to send, 1301 ms to get response, and 1313 ms overall
17-03-18 01:09:33.020 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 01:09:33.020 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:09:33.020 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:33.020 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 01:09:33.020 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:09:33.020 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:09:33.030 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:09:33.030 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:09:33.030 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:09:33.030 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:09:33.040 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:09:33.070 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 01:09:33.070 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:09:33.110 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 01:09:33.130 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-18 01:09:33.130 -07 000000610 INF: Imaging Cycle 83: ScanTilesCommand Cycle 83 time end. Duration was 309933 ms.
17-03-18 01:09:33.130 -07 000000610 INF: =================== Cycle #83 ===================
17-03-18 01:09:33.130 -07 000000610 INF: ===================  ===================
17-03-18 01:09:33.130 -07 000000487 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:09:33.130 -07 000000592 INF: FPGA: Recv EXLED1ADCR 25
17-03-18 01:09:33.140 -07 000000487 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:09:33.140 -07 000000487 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-18 01:09:33.140 -07 000000487 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 83, FrontChillerTemperature: 4.003063, FrontChillerHeatSinkTemperature: 0.443166, AmbientTemperature: 18.48554, FlowCellCompartmentTemperature: 22.00708, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.01421, GreenLEDSensorTemperature: 27.49542, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-18 01:09:33.210 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.