17-03-18 01:09:33.260 -07 000000610 INF: =================== Cycle #84 ===================
17-03-18 01:09:33.260 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 01:09:33.270 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8379 mm, delta = 0.5427 mm
17-03-18 01:09:33.270 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:33.270 -07 000000585 INF: FPGA: Recv YRDPOS 153268
17-03-18 01:09:33.280 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:33.280 -07 000000610 INF: Y Motor: Encoder = 153268 = motor step 119740.6 = 74.8379 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:33.280 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 01:09:33.280 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 01:09:33.280 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 01:09:33.390 -07 000000590 INF: FPGA: Recv YMVTO 154379 870
17-03-18 01:09:33.390 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 108 ms to get response, and 117 ms overall
17-03-18 01:09:33.390 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 01:09:33.390 -07 000000610 INF: Y Motor: To move from 74.838 to 75.381 (0.543 mm) should take 868 steps, but required 870 steps (0.544 mm). Slippage = 0.001 mm (0.00%).
17-03-18 01:09:33.390 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.543 mm, average velocity = 4.638 mm/sec
17-03-18 01:09:36.390 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:09:36.390 -07 000000579 INF: FPGA: Recv YRDPOS 154387
17-03-18 01:09:36.400 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:09:36.400 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:09:36.420 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:09:36.420 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 8 counts (0.004 mm)
17-03-18 01:09:36.420 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3150 ms
17-03-18 01:09:36.420 -07 000000610 INF: =================== Cycle #84, Flow Cell Temp 60° ===================
17-03-18 01:09:36.420 -07 000000610 INF: =================== Cycle #84, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 01:09:36.420 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 01:09:36.430 -07 000000437 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:09:36.430 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:09:36.430 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:09:36.430 -07 000000590 INF: FPGA: Recv TEC2EN 
17-03-18 01:09:36.440 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:09:36.440 -07 000000610 INF: =================== Cycle #84, Flow Cell Temp 60° ===================
17-03-18 01:09:36.440 -07 000000610 INF: =================== Cycle #84 ===================
17-03-18 01:09:36.440 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:09:36.440 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:09:36.470 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:09:36.470 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 01:09:36.470 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:09:36.500 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.988112,
17-03-18 01:09:36.770 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:09:36.790 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:09:36.790 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:09:36.840 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:09:36.860 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:09:36.860 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:09:36.960 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3) ===================
17-03-18 01:09:36.960 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:09:36.960 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:09:36.990 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:09:36.990 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:09:36.990 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:09:37.120 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:09:37.160 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:09:37.230 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:09:37.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:09:40.290 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:09:40.320 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:09:40.740 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:09:40.770 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:09:41.190 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:09:41.220 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:09:41.220 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:09:41.220 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3) ===================
17-03-18 01:09:41.350 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:09:41.390 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:09:41.390 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:09:41.520 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:09:41.550 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:09:41.550 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:09:41.550 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:09:41.680 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:09:41.710 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:09:41.860 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.003063,
17-03-18 01:09:42.140 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:09:42.170 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:09:42.170 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:09:42.170 -07 000000610 INF: =================== Cycle #84 ===================
17-03-18 01:09:42.230 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:09:42.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:09:43.390 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:09:43.390 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 01:09:43.390 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:09:43.410 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:09:43.410 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 01:09:43.410 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 01:09:43.540 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:09:43.560 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 01:09:43.560 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 01:09:43.610 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:09:43.630 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:09:43.630 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:09:43.730 -07 000000610 INF: =================== Cycle #84, Pumping Reagent CMS (4) ===================
17-03-18 01:09:43.730 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:09:43.730 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:09:43.760 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:09:43.760 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:09:43.760 -07 000000610 INF: =================== Cycle #84, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 01:09:43.890 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:09:43.930 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:09:45.370 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:09:45.400 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:09:45.820 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:09:45.850 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:09:45.850 -07 000000610 INF: LanePump: Waited 1921 ms for pump motion to complete
17-03-18 01:09:45.850 -07 000000610 INF: =================== Cycle #84, Pumping Reagent CMS (4) ===================
17-03-18 01:09:45.980 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:09:46.010 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:09:46.010 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:09:46.140 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:09:46.170 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:09:46.170 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:09:46.170 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:09:46.300 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:09:46.330 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:09:46.760 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:09:46.790 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:09:46.790 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:09:46.790 -07 000000610 INF: =================== Cycle #84 ===================
17-03-18 01:09:47.220 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.001704,
17-03-18 01:09:47.230 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:09:47.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:09:48.010 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 01:09:48.010 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:09:48.010 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:09:48.030 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:09:48.030 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 01:09:48.030 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 01:09:48.180 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:09:48.200 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 01:09:48.200 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 01:09:48.250 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:09:48.270 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:09:48.270 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:09:48.370 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3) ===================
17-03-18 01:09:48.370 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:09:48.370 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:09:48.400 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:09:48.400 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:09:48.400 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:09:48.530 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:09:48.570 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:09:49.440 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:09:49.470 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:09:49.470 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 01:09:49.470 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3) ===================
17-03-18 01:09:49.600 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:09:49.630 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:09:49.630 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:09:49.760 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:09:49.790 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:09:49.790 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:09:49.790 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:09:49.920 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:09:49.950 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:09:50.380 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:09:50.410 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:09:50.410 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:09:50.410 -07 000000610 INF: =================== Cycle #84 ===================
17-03-18 01:09:50.410 -07 000000437 INF: WaitCommand(10000) start
17-03-18 01:09:50.410 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:09:50.410 -07 000000590 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:09:51.630 -07 000000590 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:09:51.630 -07 000000590 INF: LanePump: Xmit /1?\r
17-03-18 01:09:51.660 -07 000000590 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:09:51.660 -07 000000590 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:09:51.790 -07 000000590 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:09:51.830 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:09:52.230 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:09:52.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:09:52.580 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.988112,
17-03-18 01:09:53.360 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 01:09:53.390 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:09:53.810 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 01:09:53.840 -07 000000590 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:09:53.840 -07 000000590 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:09:53.840 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:09:53.840 -07 000000590 INF: ===================  ===================
17-03-18 01:09:57.230 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:09:57.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:09:57.940 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.005817,
17-03-18 01:10:00.420 -07 000000437 INF: WaitCommand(10000) end
17-03-18 01:10:00.420 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3) ===================
17-03-18 01:10:00.420 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 01:10:00.420 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:10:00.450 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:10:00.450 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:10:00.450 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:10:00.580 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 01:10:00.620 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:10:02.230 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:10:02.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1427, Total=2802. Warn if over 250 bubbles per interval.
17-03-18 01:10:03.300 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.009895,
17-03-18 01:10:06.750 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:10:06.780 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:10:07.200 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:10:07.230 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:10:07.230 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 01:10:07.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:10:07.650 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:10:07.680 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:10:08.100 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:10:08.130 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:10:08.550 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:10:08.580 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:10:08.580 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 01:10:08.580 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3) ===================
17-03-18 01:10:08.660 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.977204,
17-03-18 01:10:08.710 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:10:08.740 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:10:08.740 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:10:08.870 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:10:08.900 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:10:08.900 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:10:08.900 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:10:09.030 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:10:09.060 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:10:09.490 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:10:09.520 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:10:09.520 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:10:09.520 -07 000000610 INF: =================== Cycle #84 ===================
17-03-18 01:10:10.740 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:10:10.740 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 01:10:10.740 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:10:10.760 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:10:10.760 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 01:10:10.760 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 01:10:10.970 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:10:10.990 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 01:10:10.990 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 01:10:11.040 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:10:11.060 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:10:11.060 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:10:11.160 -07 000000610 INF: =================== Cycle #84, Pumping Reagent IMT (1) ===================
17-03-18 01:10:11.160 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:10:11.160 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:10:11.190 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:10:11.190 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:10:11.190 -07 000000610 INF: =================== Cycle #84, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 01:10:11.320 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:10:11.360 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:10:12.230 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:10:12.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:10:12.800 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:10:12.830 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:10:13.250 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:10:13.280 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:10:13.280 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:10:13.280 -07 000000610 INF: =================== Cycle #84, Pumping Reagent IMT (1) ===================
17-03-18 01:10:13.410 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:10:13.440 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:10:13.440 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:10:13.570 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:10:13.600 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:10:13.600 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:10:13.600 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:10:13.730 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:10:13.760 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:10:14.020 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.007176,
17-03-18 01:10:14.190 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:10:14.220 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:10:14.220 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:10:14.220 -07 000000610 INF: =================== Cycle #84 ===================
17-03-18 01:10:15.440 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 01:10:15.440 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:10:15.440 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:10:15.460 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:10:15.460 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 01:10:15.460 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:10:15.690 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:10:15.710 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 01:10:15.710 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 01:10:15.760 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:10:15.780 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:10:15.780 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:10:15.880 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3) ===================
17-03-18 01:10:15.880 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:10:15.880 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:10:15.910 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:10:15.910 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:10:15.910 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:10:16.040 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:10:16.080 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:10:16.950 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:10:16.980 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:10:16.980 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 01:10:16.980 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3) ===================
17-03-18 01:10:17.110 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:10:17.140 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:10:17.140 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:10:17.230 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:10:17.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:10:17.270 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:10:17.300 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:10:17.300 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:10:17.300 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:10:17.430 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:10:17.460 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:10:17.890 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:10:17.920 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:10:17.920 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:10:17.920 -07 000000610 INF: =================== Cycle #84 ===================
17-03-18 01:10:17.920 -07 000000610 INF: =================== Cycle #84, Flow Cell Temp 65° ===================
17-03-18 01:10:17.920 -07 000000610 INF: =================== Cycle #84, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 01:10:18.190 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:10:18.190 -07 000000437 INF: FPGA: Recv TEC2EN 
17-03-18 01:10:18.200 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:10:18.200 -07 000000610 INF: =================== Cycle #84, Flow Cell Temp 65° ===================
17-03-18 01:10:18.200 -07 000000610 INF: =================== Cycle #84 ===================
17-03-18 01:10:18.200 -07 000000610 INF: WaitCommand(30000) start
17-03-18 01:10:19.380 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.020806,
17-03-18 01:10:22.230 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:10:22.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:10:24.740 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.003063,
17-03-18 01:10:27.230 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:10:27.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:10:30.100 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.02213,
17-03-18 01:10:32.230 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:10:32.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:10:35.460 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.03576,
17-03-18 01:10:37.230 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:10:37.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:10:40.820 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.985358,
17-03-18 01:10:42.230 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:10:42.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:10:46.180 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.96762,
17-03-18 01:10:47.230 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:10:47.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:10:48.210 -07 000000610 INF: WaitCommand(30000) end
17-03-18 01:10:48.210 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3) ===================
17-03-18 01:10:48.210 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 01:10:48.210 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:10:48.240 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:10:48.240 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:10:48.240 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:10:48.370 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 01:10:48.410 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:10:48.950 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:10:48.980 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:10:48.980 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 01:10:48.980 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3) ===================
17-03-18 01:10:49.110 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:10:49.140 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:10:49.140 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:10:49.270 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:10:49.300 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:10:49.300 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:10:49.300 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:10:49.430 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:10:49.460 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:10:49.890 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:10:49.920 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:10:49.920 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:10:49.920 -07 000000610 INF: =================== Cycle #84 ===================
17-03-18 01:10:49.920 -07 000000581 INF: WaitCommand(30000) start
17-03-18 01:10:49.920 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:10:49.920 -07 000000444 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:10:51.140 -07 000000444 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:10:51.140 -07 000000444 INF: LanePump: Xmit /1?\r
17-03-18 01:10:51.170 -07 000000444 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:10:51.170 -07 000000444 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:10:51.300 -07 000000444 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:10:51.340 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:10:51.540 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.001704,
17-03-18 01:10:52.230 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:10:52.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:10:53.680 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 01:10:53.710 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:10:54.130 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 01:10:54.160 -07 000000444 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:10:54.160 -07 000000444 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 01:10:54.160 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:10:54.160 -07 000000444 INF: ===================  ===================
17-03-18 01:10:56.900 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.016692,
17-03-18 01:10:57.230 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:10:57.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:11:02.230 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:11:02.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:11:02.260 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.031682,
17-03-18 01:11:07.230 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:11:07.230 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:11:07.620 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.015368,
17-03-18 01:11:12.230 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:11:12.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:11:12.980 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.993549,
17-03-18 01:11:17.230 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:11:17.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:11:18.340 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.007176,
17-03-18 01:11:19.930 -07 000000581 INF: WaitCommand(30000) end
17-03-18 01:11:19.930 -07 000000610 INF: =================== Cycle #84, Flow Cell Temp 22° ===================
17-03-18 01:11:19.930 -07 000000610 INF: =================== Cycle #84, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 01:11:19.930 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 01:11:19.940 -07 000000462 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:11:19.940 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:11:19.940 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:11:19.940 -07 000000447 INF: FPGA: Recv TEC2EN 
17-03-18 01:11:19.950 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:11:19.950 -07 000000610 INF: =================== Cycle #84, Flow Cell Temp 22° ===================
17-03-18 01:11:19.950 -07 000000610 INF: =================== Cycle #84 ===================
17-03-18 01:11:19.950 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3) ===================
17-03-18 01:11:19.950 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:11:19.950 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:11:19.990 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:11:19.990 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:11:19.990 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:11:20.120 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:11:20.160 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:11:22.230 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:11:22.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1375, R2=1428, Total=2803. Warn if over 250 bubbles per interval.
17-03-18 01:11:23.290 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:11:23.320 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:11:23.700 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.951279,
17-03-18 01:11:23.740 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:11:23.770 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:11:24.190 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:11:24.220 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:11:24.220 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:11:24.220 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3) ===================
17-03-18 01:11:24.350 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:11:24.380 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:11:24.380 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:11:24.510 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:11:24.540 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:11:24.540 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:11:24.540 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:11:24.670 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:11:24.700 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:11:25.130 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:11:25.160 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:11:25.160 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:11:25.160 -07 000000610 INF: =================== Cycle #84 ===================
17-03-18 01:11:26.380 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 01:11:26.380 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 01:11:26.380 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:11:26.400 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:11:26.400 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 01:11:26.400 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 01:11:26.550 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:11:26.570 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:11:26.570 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:11:26.620 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:11:26.640 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:11:26.640 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:11:26.740 -07 000000610 INF: =================== Cycle #84, Pumping Reagent USM (2) ===================
17-03-18 01:11:26.740 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:11:26.740 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:11:26.770 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:11:26.770 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:11:26.770 -07 000000610 INF: =================== Cycle #84, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 01:11:26.900 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:11:26.940 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:11:27.240 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 01:11:27.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1429, Total=2805. Warn if over 250 bubbles per interval.
17-03-18 01:11:28.380 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:11:28.410 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:11:28.830 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:11:28.860 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:11:28.860 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:11:28.860 -07 000000610 INF: =================== Cycle #84, Pumping Reagent USM (2) ===================
17-03-18 01:11:28.990 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:11:29.020 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:11:29.020 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:11:29.060 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.96762,
17-03-18 01:11:29.150 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:11:29.180 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:11:29.180 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:11:29.180 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:11:29.310 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:11:29.340 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:11:29.770 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:11:29.800 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:11:29.800 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:11:29.800 -07 000000610 INF: =================== Cycle #84 ===================
17-03-18 01:11:31.020 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:11:31.020 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:11:31.020 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:11:31.040 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:11:31.040 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 01:11:31.040 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:11:31.190 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:11:31.210 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:11:31.210 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:11:31.260 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:11:31.280 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:11:31.280 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:11:31.380 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3) ===================
17-03-18 01:11:31.380 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:11:31.380 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:11:31.410 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:11:31.410 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:11:31.410 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:11:31.540 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:11:31.580 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:11:32.240 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 01:11:32.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:11:32.450 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:11:32.480 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:11:32.480 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:11:32.480 -07 000000610 INF: =================== Cycle #84, Pumping Reagent PR2 (3) ===================
17-03-18 01:11:32.610 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:11:32.640 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:11:32.640 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:11:32.770 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:11:32.800 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:11:32.800 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:11:32.800 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:11:32.930 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:11:32.960 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:11:33.390 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:11:33.420 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:11:33.420 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:11:33.420 -07 000000610 INF: =================== Cycle #84 ===================
17-03-18 01:11:33.420 -07 000000590 INF: WaitCommand(10000) start
17-03-18 01:11:33.420 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:11:33.420 -07 000000462 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:11:34.420 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.997626,
17-03-18 01:11:34.640 -07 000000462 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:11:34.640 -07 000000462 INF: LanePump: Xmit /1?\r
17-03-18 01:11:34.670 -07 000000462 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:11:34.670 -07 000000462 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:11:34.800 -07 000000462 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:11:34.840 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:11:36.370 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-18 01:11:36.400 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:11:36.820 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-18 01:11:36.850 -07 000000462 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:11:36.850 -07 000000462 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:11:36.850 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:11:36.850 -07 000000462 INF: ===================  ===================
17-03-18 01:11:37.240 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:11:37.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:11:39.780 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.99219,
17-03-18 01:11:42.240 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:11:42.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:11:43.430 -07 000000590 INF: WaitCommand(10000) end
17-03-18 01:11:43.430 -07 000000610 INF: =================== Cycle #84, Imaging ===================
17-03-18 01:11:43.430 -07 000000610 INF: Imaging Cycle 84: ScanTilesCommand Cycle 84 time start.
17-03-18 01:11:43.430 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 01:11:43.430 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:11:43.460 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:11:43.460 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 01:11:43.460 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 01:11:43.760 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:11:43.780 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:11:43.780 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:11:43.830 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:11:43.850 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:11:43.850 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:11:43.850 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:11:43.850 -07 000000444 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 01:11:43.850 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:11:43.850 -07 000000444 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 01:11:43.860 -07 000000590 INF: FPGA: Recv EXLED1ON 
17-03-18 01:11:43.860 -07 000000444 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:11:43.860 -07 000000444 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 01:11:43.860 -07 000000590 INF: FPGA: Recv EXLED1ADCR 23154
17-03-18 01:11:43.870 -07 000000444 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:43.870 -07 000000444 INF: RedLED: Using Red data: Photodiode ADC 23154 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.8 mW
17-03-18 01:11:43.870 -07 000000444 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 01:11:43.870 -07 000000447 INF: FPGA: Recv EXLED1OFF 
17-03-18 01:11:43.880 -07 000000444 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:43.880 -07 000000444 INF: RedLED: LED was on for 19 ms
17-03-18 01:11:43.880 -07 000000444 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 01:11:43.880 -07 000000444 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 01:11:43.880 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:11:43.880 -07 000000444 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 01:11:43.880 -07 000000447 INF: FPGA: Recv EXLED2ON 
17-03-18 01:11:43.890 -07 000000444 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:11:43.890 -07 000000444 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:11:43.890 -07 000000579 INF: FPGA: Recv EXLED1ADCR 2098
17-03-18 01:11:43.900 -07 000000444 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:43.900 -07 000000444 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-18 01:11:43.910 -07 000000444 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 01:11:43.910 -07 000000447 INF: FPGA: Recv EXLED2OFF 
17-03-18 01:11:43.920 -07 000000444 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:11:43.920 -07 000000444 INF: GreenLED: LED was on for 29 ms
17-03-18 01:11:43.920 -07 000000444 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 38 ms.
17-03-18 01:11:43.940 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:11:43.940 -07 000000447 INF: FPGA: Recv EMCUR 
17-03-18 01:11:43.950 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:11:43.950 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 01:11:44.450 -07 000000447 INF: FPGA: Recv EMOUT
17-03-18 01:11:44.450 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 01:11:44.450 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 01:11:44.450 -07 000000437 INF: FPGA: Recv EMCUR 
17-03-18 01:11:44.460 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:11:44.460 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:11:44.460 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.125751811270923. ------
17-03-18 01:11:44.460 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:11:44.460 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17829 mm
17-03-18 01:11:44.460 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:11:44.460 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 38948, sync = True, waitForSettling = False)
17-03-18 01:11:44.460 -07 000000437 INF: Z Motor: Moving to -0.178293 mm, started at -0.125752 mm, distance = -52.54 um
17-03-18 01:11:44.460 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:11:44.460 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:11:44.460 -07 000000447 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 01:11:44.470 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:11:44.470 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:11:44.470 -07 000000462 INF: FPGA: Recv YRDPOS 154387
17-03-18 01:11:44.480 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:11:44.480 -07 000000447 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:11:44.480 -07 000000447 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 01:11:44.480 -07 000000447 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:11:44.480 -07 000000437 INF: FPGA: Xmit ZDACW 38948\n [Z Motor]
17-03-18 01:11:44.480 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:11:44.490 -07 000000437 INF: FPGA: 'ZDACW 38948' command took 3 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 01:11:44.490 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:11:44.500 -07 000000447 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:11:44.510 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:11:44.510 -07 000000430 INF: FPGA: Recv ZDACR 38948
17-03-18 01:11:44.520 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:11:44.520 -07 000000437 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 01:11:44.690 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:11:44.690 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:11:45.140 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.011254,
17-03-18 01:11:46.180 -07 000000437 INF: FPGA: Recv YMVTO 122703 24783
17-03-18 01:11:46.180 -07 000000447 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1703 ms overall
17-03-18 01:11:46.180 -07 000000447 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:11:46.180 -07 000000447 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24783 steps (15.489 mm). Slippage = 0.018 mm (0.00%).
17-03-18 01:11:46.180 -07 000000447 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.472 mm, average velocity = 9.085 mm/sec
17-03-18 01:11:47.240 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:11:47.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:11:49.030 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:11:49.030 -07 000000444 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:11:49.040 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:11:49.040 -07 000000447 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:11:49.060 -07 000000447 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:11:49.060 -07 000000447 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 01:11:49.060 -07 000000447 INF: Y Motor: Moved to 59.9106 after 4597 ms
17-03-18 01:11:49.070 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178293 mm (DAC = 38948)
17-03-18 01:11:49.070 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:49.070 -07 000000462 INF: FPGA: Recv ZSGSRD 37046
17-03-18 01:11:49.080 -07 000000579 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:49.080 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:49.080 -07 000000430 INF: FPGA: Recv ZSGSRD 37047
17-03-18 01:11:49.090 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:49.090 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:49.090 -07 000000592 INF: FPGA: Recv ZSGSRD 37045
17-03-18 01:11:49.100 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:49.100 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:49.100 -07 000000462 INF: FPGA: Recv ZSGSRD 37039
17-03-18 01:11:49.110 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:49.110 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:49.110 -07 000000447 INF: FPGA: Recv ZSGSRD 37045
17-03-18 01:11:49.120 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:49.120 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:49.120 -07 000000444 INF: FPGA: Recv ZSGSRD 37047
17-03-18 01:11:49.130 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:49.130 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:49.130 -07 000000430 INF: FPGA: Recv ZSGSRD 37042
17-03-18 01:11:49.140 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:49.140 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:49.140 -07 000000581 INF: FPGA: Recv ZSGSRD 37041
17-03-18 01:11:49.150 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:49.150 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:49.150 -07 000000447 INF: FPGA: Recv ZSGSRD 37042
17-03-18 01:11:49.160 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:49.160 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:49.160 -07 000000430 INF: FPGA: Recv ZSGSRD 37048
17-03-18 01:11:49.170 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:49.170 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:11:49.170 -07 000000592 INF: FPGA: Recv ZPIEZORD 33147
17-03-18 01:11:49.180 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:49.180 -07 000000579 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.943 V. Piezo Error = -8.6 V.
17-03-18 01:11:49.180 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37044 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37045 (-177.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37039 (-177.4 uncal um), Max = 37048 (-177.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:11:49.180 -07 000000579 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37044, posNoise = 4, negNoise = 5
17-03-18 01:11:49.180 -07 000000579 INF: Z Motor: After move to -0.178293, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:11:49.180 -07 000000579 INF: Z Motor: Settle wait time = 4601 ms, measure time = 110 ms (allowed 150 ms), total time = 4711 ms
17-03-18 01:11:49.180 -07 000000579 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:11:49.220 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4753 ms
17-03-18 01:11:49.220 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:11:49.220 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:11:49.220 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:11:49.220 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:11:49.220 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:11:49.220 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:11:49.220 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:11:49.230 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:11:49.230 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:11:49.250 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 01:11:49.250 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:11:49.250 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 01:11:49.250 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:11:49.270 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:11:49.270 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-18 01:11:49.270 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:11:49.320 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:11:49.620 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:11:49.620 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:11:49.620 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:11:49.620 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2604313376, 0x0, 559484976) start.
17-03-18 01:11:49.650 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:11:49.650 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:11:49.650 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:11:49.750 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2604313376, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:11:49.750 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:11:49.750 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:11:49.750 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:11:49.850 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:11:49.850 -07 000000430 INF: Image SNR check: start
17-03-18 01:11:49.850 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:11:49.860 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:11:49.860 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:11:49.860 -07 000000430 INF: Image SNR check: pass  [peak (Max-Min)=190.58]
17-03-18 01:11:49.860 -07 000000430 INF: Autofocus start
17-03-18 01:11:49.860 -07 000000430 INF: MeasureProfile start
17-03-18 01:11:49.870 -07 000000430 INF: MeasureProfile done
17-03-18 01:11:49.880 -07 000000430 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:11:49.880 -07 000000430 INF: Autofocus finished
17-03-18 01:11:50.060 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:11:50.060 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:11:50.060 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.178301866590528. ----------
17-03-18 01:11:50.060 -07 000000610 INF: Cycle	84	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:11:50.070 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37480, sync = True, waitForSettling = True)
17-03-18 01:11:50.070 -07 000000610 INF: Z Motor: Moving to -0.171572 mm, started at -0.178302 mm, distance = 6.73 um
17-03-18 01:11:50.070 -07 000000610 INF: FPGA: Xmit ZDACW 37480\n [Z Motor]
17-03-18 01:11:50.070 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:11:50.080 -07 000000610 INF: FPGA: 'ZDACW 37480' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:11:50.080 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:11:50.080 -07 000000581 INF: FPGA: Recv ZDACR 37480
17-03-18 01:11:50.090 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:50.090 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:11:50.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:50.240 -07 000000581 INF: FPGA: Recv ZSGSRD 36001
17-03-18 01:11:50.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:11:50.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:50.250 -07 000000455 INF: FPGA: Recv ZSGSRD 36000
17-03-18 01:11:50.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:50.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:50.260 -07 000000430 INF: FPGA: Recv ZSGSRD 35999
17-03-18 01:11:50.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:50.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:50.270 -07 000000581 INF: FPGA: Recv ZSGSRD 36000
17-03-18 01:11:50.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:50.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:50.280 -07 000000592 INF: FPGA: Recv ZSGSRD 35996
17-03-18 01:11:50.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:50.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:50.290 -07 000000447 INF: FPGA: Recv ZSGSRD 36001
17-03-18 01:11:50.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:50.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:50.300 -07 000000430 INF: FPGA: Recv ZSGSRD 35996
17-03-18 01:11:50.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:50.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:50.310 -07 000000455 INF: FPGA: Recv ZSGSRD 35997
17-03-18 01:11:50.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:50.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:50.320 -07 000000430 INF: FPGA: Recv ZSGSRD 36002
17-03-18 01:11:50.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:50.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:50.330 -07 000000579 INF: FPGA: Recv ZSGSRD 36000
17-03-18 01:11:50.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:50.340 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:11:50.340 -07 000000430 INF: FPGA: Recv ZPIEZORD 31751
17-03-18 01:11:50.350 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:50.350 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.719 V. Piezo Error = -9.4 V.
17-03-18 01:11:50.350 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 35999 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36000 (-170.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35996 (-170.7 uncal um), Max = 36002 (-170.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:11:50.350 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35999, posNoise = 3, negNoise = 3
17-03-18 01:11:50.350 -07 000000610 INF: Z Motor: After move to -0.171572, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:11:50.350 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:11:50.350 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:11:50.350 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:11:50.350 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:11:50.350 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:11:50.350 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:11:50.350 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:11:50.350 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:11:50.350 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:11:50.350 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:11:50.350 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:11:50.350 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:11:50.350 -07 000000430 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:11:50.360 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:11:50.360 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:11:50.370 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:11:50.370 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:11:50.380 -07 000000430 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 01:11:50.380 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:11:50.380 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:11:50.380 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:11:50.390 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:11:50.390 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-18 01:11:50.390 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37657 150\n [Camera]
17-03-18 01:11:50.500 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.020806,
17-03-18 01:11:50.590 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:11:50.980 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:11:50.980 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:11:50.980 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:11:50.980 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:11:50.980 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:11:50.990 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:11:50.990 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:11:50.990 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:11:50.990 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:11:50.990 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:11:51.180 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37657 775
17-03-18 01:11:51.330 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:11:51.380 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:11:51.390 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:11:51.390 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:11:51.390 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:11:51.390 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:11:51.390 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:11:51.390 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:11:51.390 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:11:51.400 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:11:51.400 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:11:51.520 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:11:51.520 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:11:51.520 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:11:51.640 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:11:51.640 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:11:51.640 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:11:51.650 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:11:51.650 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:11:51.650 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:11:51.650 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:11:51.710 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:11:51.710 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:11:51.710 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37657 150' command took 2 ms to send, 1301 ms to get response, and 1312 ms overall
17-03-18 01:11:51.710 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:11:51.710 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.171588564902388. ------
17-03-18 01:11:51.710 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:11:51.710 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17767 mm
17-03-18 01:11:51.710 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:11:51.720 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:11:51.720 -07 000000581 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 01:11:51.720 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:11:51.720 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38811, sync = True, waitForSettling = False)
17-03-18 01:11:51.720 -07 000000455 INF: Z Motor: Moving to -0.177665 mm, started at -0.171589 mm, distance = -6.08 um
17-03-18 01:11:51.720 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:11:51.720 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 01:11:51.720 -07 000000462 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:11:51.730 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:51.730 -07 000000581 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:11:51.730 -07 000000581 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:11:51.730 -07 000000581 INF: Y Motor: Moving 1331 steps2
17-03-18 01:11:51.730 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:11:51.740 -07 000000455 INF: FPGA: Xmit ZDACW 38811\n [Z Motor]
17-03-18 01:11:51.740 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:11:51.750 -07 000000455 INF: FPGA: 'ZDACW 38811' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:11:51.750 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:11:51.760 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:11:51.760 -07 000000592 INF: FPGA: Recv ZDACR 38811
17-03-18 01:11:51.770 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:11:51.770 -07 000000455 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 01:11:51.930 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:11:51.930 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 213 ms overall
17-03-18 01:11:52.040 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 01:11:52.040 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:11:52.040 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:11:52.040 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:11:52.040 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:11:52.040 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:11:52.040 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:11:52.040 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:11:52.040 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 01:11:52.050 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:11:52.120 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 01:11:52.120 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:11:52.160 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:11:52.160 -07 000000430 INF: FPGA: Recv YRDPOS 124379
17-03-18 01:11:52.170 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:11:52.170 -07 000000581 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:11:52.170 -07 000000581 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 01:11:52.170 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.832 mm, average velocity = 2.106 mm/sec
17-03-18 01:11:52.240 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:11:52.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:11:53.120 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:11:53.120 -07 000000455 INF: FPGA: Recv YRDPOS 124380
17-03-18 01:11:53.130 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:11:53.130 -07 000000581 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:11:53.150 -07 000000581 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:11:53.150 -07 000000581 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:11:53.150 -07 000000581 INF: Y Motor: Moved to 60.7324 after 1437 ms (table move)
17-03-18 01:11:53.160 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177665 mm (DAC = 38811)
17-03-18 01:11:53.160 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:53.160 -07 000000480 INF: FPGA: Recv ZSGSRD 36950
17-03-18 01:11:53.170 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:11:53.170 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:53.170 -07 000000461 INF: FPGA: Recv ZSGSRD 36946
17-03-18 01:11:53.180 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:53.180 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:53.180 -07 000000462 INF: FPGA: Recv ZSGSRD 36945
17-03-18 01:11:53.190 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:53.190 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:53.190 -07 000000581 INF: FPGA: Recv ZSGSRD 36949
17-03-18 01:11:53.200 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:53.200 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:53.200 -07 000000462 INF: FPGA: Recv ZSGSRD 36949
17-03-18 01:11:53.210 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:53.210 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:53.210 -07 000000581 INF: FPGA: Recv ZSGSRD 36949
17-03-18 01:11:53.220 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:53.220 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:53.220 -07 000000462 INF: FPGA: Recv ZSGSRD 36956
17-03-18 01:11:53.230 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:11:53.230 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:53.230 -07 000000590 INF: FPGA: Recv ZSGSRD 36946
17-03-18 01:11:53.240 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:53.240 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:53.240 -07 000000462 INF: FPGA: Recv ZSGSRD 36945
17-03-18 01:11:53.250 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:53.250 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:53.250 -07 000000447 INF: FPGA: Recv ZSGSRD 36950
17-03-18 01:11:53.260 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:11:53.260 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:11:53.260 -07 000000576 INF: FPGA: Recv ZPIEZORD 33043
17-03-18 01:11:53.270 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:53.270 -07 000000444 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.922 V. Piezo Error = -8.6 V.
17-03-18 01:11:53.270 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36948 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36949 (-176.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36945 (-176.8 uncal um), Max = 36956 (-176.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:11:53.270 -07 000000444 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36948, posNoise = 8, negNoise = 3
17-03-18 01:11:53.270 -07 000000444 INF: Z Motor: After move to -0.177665, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:11:53.270 -07 000000444 INF: Z Motor: Settle wait time = 1440 ms, measure time = 109 ms (allowed 150 ms), total time = 1549 ms
17-03-18 01:11:53.270 -07 000000444 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:11:53.320 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 01:11:53.320 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:11:53.320 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:11:53.320 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:11:53.320 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:11:53.320 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:11:53.320 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:11:53.320 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:11:53.320 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:11:53.320 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:11:53.330 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:11:53.330 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:11:53.340 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:11:53.340 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:11:53.340 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:11:53.390 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:11:53.690 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:11:53.690 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:11:53.690 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:11:53.690 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 01:11:53.730 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:11:53.730 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 01:11:53.730 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 01:11:53.820 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:11:53.820 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:11:53.820 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:11:53.820 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:11:53.830 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:11:53.830 -07 000000437 INF: Autofocus start
17-03-18 01:11:53.830 -07 000000437 INF: MeasureProfile start
17-03-18 01:11:53.830 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:11:53.840 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:11:53.840 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:11:53.840 -07 000000437 INF: MeasureProfile done
17-03-18 01:11:53.840 -07 000000437 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:11:53.840 -07 000000437 INF: Autofocus finished
17-03-18 01:11:54.040 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:11:54.040 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:11:54.040 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177685142224919. ----------
17-03-18 01:11:54.040 -07 000000610 INF: Cycle	84	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:11:54.050 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37308, sync = True, waitForSettling = True)
17-03-18 01:11:54.050 -07 000000610 INF: Z Motor: Moving to -0.170785 mm, started at -0.177685 mm, distance = 6.90 um
17-03-18 01:11:54.050 -07 000000610 INF: FPGA: Xmit ZDACW 37308\n [Z Motor]
17-03-18 01:11:54.050 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 01:11:54.060 -07 000000610 INF: FPGA: 'ZDACW 37308' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:54.060 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:11:54.060 -07 000000455 INF: FPGA: Recv ZDACR 37308
17-03-18 01:11:54.070 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:54.070 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:11:54.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:54.220 -07 000000592 INF: FPGA: Recv ZSGSRD 35882
17-03-18 01:11:54.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:11:54.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:54.230 -07 000000444 INF: FPGA: Recv ZSGSRD 35874
17-03-18 01:11:54.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:54.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:54.240 -07 000000590 INF: FPGA: Recv ZSGSRD 35876
17-03-18 01:11:54.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:54.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:54.250 -07 000000447 INF: FPGA: Recv ZSGSRD 35874
17-03-18 01:11:54.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:54.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:54.260 -07 000000461 INF: FPGA: Recv ZSGSRD 35871
17-03-18 01:11:54.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:54.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:54.270 -07 000000579 INF: FPGA: Recv ZSGSRD 35883
17-03-18 01:11:54.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:54.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:54.280 -07 000000461 INF: FPGA: Recv ZSGSRD 35873
17-03-18 01:11:54.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:54.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:54.290 -07 000000461 INF: FPGA: Recv ZSGSRD 35881
17-03-18 01:11:54.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:54.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:54.300 -07 000000579 INF: FPGA: Recv ZSGSRD 35877
17-03-18 01:11:54.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:54.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:54.310 -07 000000581 INF: FPGA: Recv ZSGSRD 35871
17-03-18 01:11:54.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:54.320 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:11:54.320 -07 000000461 INF: FPGA: Recv ZPIEZORD 31597
17-03-18 01:11:54.330 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:54.330 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.693 V. Piezo Error = -9.4 V.
17-03-18 01:11:54.330 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35876 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35875 (-169.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35871 (-169.9 uncal um), Max = 35883 (-170.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:11:54.330 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35876, posNoise = 7, negNoise = 5
17-03-18 01:11:54.330 -07 000000610 INF: Z Motor: After move to -0.170785, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:11:54.330 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:11:54.330 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:11:54.330 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:11:54.330 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:11:54.330 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:11:54.330 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:11:54.330 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:11:54.330 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:11:54.330 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:11:54.330 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:11:54.330 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:11:54.330 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:11:54.330 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:11:54.330 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:11:54.330 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:11:54.340 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 01:11:54.340 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:11:54.350 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:11:54.350 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:11:54.350 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 01:11:54.350 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:11:54.350 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37485 150\n [Camera]
17-03-18 01:11:54.550 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:11:54.950 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:11:54.950 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:11:54.950 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:11:54.950 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:11:54.950 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:11:54.950 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:11:55.060 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:11:55.060 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2618989456, 0x0, 391868352) start.
17-03-18 01:11:55.060 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:11:55.060 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:11:55.140 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37485 775
17-03-18 01:11:55.290 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:11:55.450 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2618989456, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:11:55.450 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:11:55.450 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:11:55.450 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:11:55.450 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:11:55.450 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:11:55.460 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:11:55.460 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-18 01:11:55.460 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:11:55.470 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 01:11:55.470 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:11:55.470 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:11:55.470 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:11:55.480 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:11:55.480 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:11:55.480 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:11:55.480 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:11:55.480 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:11:55.480 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:11:55.480 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2581692120, 0x0, 418435064) start.
17-03-18 01:11:55.670 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:11:55.670 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:11:55.670 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37485 150' command took 2 ms to send, 1300 ms to get response, and 1312 ms overall
17-03-18 01:11:55.670 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:11:55.670 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.170798386808951. ------
17-03-18 01:11:55.670 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17734 mm
17-03-18 01:11:55.670 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:11:55.670 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:11:55.680 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:11:55.680 -07 000000447 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 01:11:55.680 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:11:55.680 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:11:55.680 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 01:11:55.680 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38741, sync = True, waitForSettling = False)
17-03-18 01:11:55.680 -07 000000579 INF: Z Motor: Moving to -0.177345 mm, started at -0.170798 mm, distance = -6.55 um
17-03-18 01:11:55.680 -07 000000591 INF: FPGA: Recv YRDPOS 124380
17-03-18 01:11:55.690 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:11:55.690 -07 000000447 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:11:55.690 -07 000000447 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:11:55.690 -07 000000447 INF: Y Motor: Moving 1344 steps-22
17-03-18 01:11:55.690 -07 000000579 INF: FPGA: Xmit ZDACW 38741\n [Z Motor]
17-03-18 01:11:55.690 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:11:55.700 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:11:55.700 -07 000000579 INF: FPGA: 'ZDACW 38741' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:11:55.710 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:11:55.720 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:11:55.720 -07 000000430 INF: FPGA: Recv ZDACR 38741
17-03-18 01:11:55.730 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:11:55.730 -07 000000579 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 01:11:55.860 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.049392,
17-03-18 01:11:55.870 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2581692120, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 01:11:55.870 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 01:11:55.870 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:11:55.870 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:11:55.870 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:11:55.870 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:11:55.870 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:11:55.880 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:11:55.880 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:11:55.880 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:11:55.900 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:11:55.900 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 01:11:56.080 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 01:11:56.080 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:11:56.130 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:11:56.130 -07 000000581 INF: FPGA: Recv YRDPOS 126081
17-03-18 01:11:56.140 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:11:56.140 -07 000000447 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:11:56.140 -07 000000447 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:11:56.140 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 01:11:57.090 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:11:57.090 -07 000000480 INF: FPGA: Recv YRDPOS 126081
17-03-18 01:11:57.100 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:57.100 -07 000000447 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:11:57.120 -07 000000447 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:11:57.120 -07 000000447 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:11:57.120 -07 000000447 INF: Y Motor: Moved to 61.5630 after 1444 ms (table move)
17-03-18 01:11:57.130 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177345 mm (DAC = 38741)
17-03-18 01:11:57.130 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:57.130 -07 000000581 INF: FPGA: Recv ZSGSRD 36891
17-03-18 01:11:57.140 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:11:57.140 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:57.140 -07 000000462 INF: FPGA: Recv ZSGSRD 36892
17-03-18 01:11:57.150 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:57.150 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:57.150 -07 000000447 INF: FPGA: Recv ZSGSRD 36895
17-03-18 01:11:57.160 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:57.160 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:57.160 -07 000000430 INF: FPGA: Recv ZSGSRD 36898
17-03-18 01:11:57.170 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:57.170 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:57.170 -07 000000591 INF: FPGA: Recv ZSGSRD 36903
17-03-18 01:11:57.180 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:57.180 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:57.180 -07 000000430 INF: FPGA: Recv ZSGSRD 36898
17-03-18 01:11:57.190 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:57.190 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:57.190 -07 000000462 INF: FPGA: Recv ZSGSRD 36903
17-03-18 01:11:57.200 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:57.200 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:57.200 -07 000000581 INF: FPGA: Recv ZSGSRD 36894
17-03-18 01:11:57.210 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:57.210 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:57.210 -07 000000430 INF: FPGA: Recv ZSGSRD 36887
17-03-18 01:11:57.220 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:57.220 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:57.220 -07 000000581 INF: FPGA: Recv ZSGSRD 36894
17-03-18 01:11:57.230 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:57.230 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:11:57.230 -07 000000591 INF: FPGA: Recv ZPIEZORD 32953
17-03-18 01:11:57.240 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:57.240 -07 000000592 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.7 V.
17-03-18 01:11:57.240 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36896 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36894 (-176.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36887 (-176.4 uncal um), Max = 36903 (-176.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:11:57.240 -07 000000592 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36896, posNoise = 7, negNoise = 9
17-03-18 01:11:57.240 -07 000000592 INF: Z Motor: After move to -0.177345, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:11:57.240 -07 000000592 INF: Z Motor: Settle wait time = 1447 ms, measure time = 110 ms (allowed 150 ms), total time = 1557 ms
17-03-18 01:11:57.240 -07 000000592 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:11:57.240 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:11:57.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:11:57.280 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 01:11:57.280 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:11:57.280 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:11:57.280 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:11:57.280 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:11:57.280 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:11:57.280 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:11:57.280 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:11:57.280 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:11:57.280 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:11:57.290 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:11:57.290 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:11:57.300 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:11:57.300 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:11:57.300 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:11:57.350 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 01:11:57.650 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 01:11:57.650 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 01:11:57.650 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:11:57.650 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 01:11:57.690 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:11:57.690 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 01:11:57.690 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 382 ms to get response, and 386 ms overall
17-03-18 01:11:57.780 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:11:57.780 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:11:57.780 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:11:57.780 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:11:57.790 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:11:57.790 -07 000000591 INF: Autofocus start
17-03-18 01:11:57.790 -07 000000591 INF: MeasureProfile start
17-03-18 01:11:57.790 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:11:57.800 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:11:57.800 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:11:57.800 -07 000000591 INF: MeasureProfile done
17-03-18 01:11:57.800 -07 000000591 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:11:57.800 -07 000000591 INF: Autofocus finished
17-03-18 01:11:58.000 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:11:58.000 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:11:58.000 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177351083193547. ----------
17-03-18 01:11:58.000 -07 000000610 INF: Cycle	84	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:11:58.010 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37273, sync = True, waitForSettling = True)
17-03-18 01:11:58.010 -07 000000610 INF: Z Motor: Moving to -0.170625 mm, started at -0.177351 mm, distance = 6.73 um
17-03-18 01:11:58.010 -07 000000610 INF: FPGA: Xmit ZDACW 37273\n [Z Motor]
17-03-18 01:11:58.010 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:11:58.020 -07 000000610 INF: FPGA: 'ZDACW 37273' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:11:58.020 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:11:58.020 -07 000000430 INF: FPGA: Recv ZDACR 37273
17-03-18 01:11:58.030 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:58.030 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:11:58.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:58.180 -07 000000430 INF: FPGA: Recv ZSGSRD 35852
17-03-18 01:11:58.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:58.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:58.190 -07 000000430 INF: FPGA: Recv ZSGSRD 35851
17-03-18 01:11:58.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:58.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:58.200 -07 000000590 INF: FPGA: Recv ZSGSRD 35851
17-03-18 01:11:58.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:58.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:58.210 -07 000000430 INF: FPGA: Recv ZSGSRD 35856
17-03-18 01:11:58.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:58.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:58.220 -07 000000430 INF: FPGA: Recv ZSGSRD 35846
17-03-18 01:11:58.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:58.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:58.230 -07 000000591 INF: FPGA: Recv ZSGSRD 35849
17-03-18 01:11:58.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:58.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:58.240 -07 000000430 INF: FPGA: Recv ZSGSRD 35855
17-03-18 01:11:58.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:11:58.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:58.250 -07 000000591 INF: FPGA: Recv ZSGSRD 35851
17-03-18 01:11:58.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:58.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:58.260 -07 000000591 INF: FPGA: Recv ZSGSRD 35850
17-03-18 01:11:58.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:58.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:11:58.270 -07 000000591 INF: FPGA: Recv ZSGSRD 35847
17-03-18 01:11:58.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:58.280 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:11:58.280 -07 000000591 INF: FPGA: Recv ZPIEZORD 31559
17-03-18 01:11:58.290 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:11:58.290 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -9.5 V.
17-03-18 01:11:58.290 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35851 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35851 (-169.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35846 (-169.7 uncal um), Max = 35856 (-169.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:11:58.290 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35851, posNoise = 5, negNoise = 5
17-03-18 01:11:58.290 -07 000000610 INF: Z Motor: After move to -0.170625, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:11:58.290 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:11:58.290 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:11:58.290 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:11:58.290 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:11:58.290 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:11:58.290 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:11:58.290 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:11:58.290 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:11:58.290 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:11:58.290 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:11:58.290 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:11:58.290 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:11:58.290 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:11:58.300 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:11:58.300 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:11:58.300 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:11:58.300 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:11:58.300 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:11:58.300 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:11:58.310 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:11:58.310 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:11:58.310 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37450 150\n [Camera]
17-03-18 01:11:58.510 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:11:58.900 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:11:58.900 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:11:58.900 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:11:58.910 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:11:58.910 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:11:58.910 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:11:58.910 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:11:58.910 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:11:58.910 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:11:58.910 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:11:59.100 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37450 775
17-03-18 01:11:59.250 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 01:11:59.290 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 01:11:59.290 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:11:59.290 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:11:59.300 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 01:11:59.300 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:11:59.300 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:11:59.300 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:11:59.300 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:11:59.300 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:11:59.310 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:11:59.430 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:11:59.430 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:11:59.440 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:11:59.440 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:11:59.440 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:11:59.440 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:11:59.440 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:11:59.440 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:11:59.440 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:11:59.440 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:11:59.630 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:11:59.630 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:11:59.630 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37450 150' command took 2 ms to send, 1311 ms to get response, and 1315 ms overall
17-03-18 01:11:59.630 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:11:59.630 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.170637781505407. ------
17-03-18 01:11:59.630 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:11:59.630 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17688 mm
17-03-18 01:11:59.630 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:11:59.640 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:11:59.640 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:11:59.640 -07 000000461 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 01:11:59.640 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:11:59.640 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38639, sync = True, waitForSettling = False)
17-03-18 01:11:59.640 -07 000000444 INF: Z Motor: Moving to -0.176878 mm, started at -0.170638 mm, distance = -6.24 um
17-03-18 01:11:59.640 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-18 01:11:59.640 -07 000000480 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:11:59.650 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:11:59.650 -07 000000461 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:11:59.650 -07 000000444 INF: FPGA: Xmit ZDACW 38639\n [Z Motor]
17-03-18 01:11:59.650 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:11:59.650 -07 000000461 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:11:59.650 -07 000000461 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:11:59.660 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:11:59.660 -07 000000444 INF: FPGA: 'ZDACW 38639' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:11:59.670 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:11:59.680 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:11:59.680 -07 000000590 INF: FPGA: Recv ZDACR 38639
17-03-18 01:11:59.690 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:11:59.690 -07 000000444 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:11:59.830 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:11:59.830 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:11:59.830 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:11:59.840 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:11:59.840 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:11:59.840 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:11:59.840 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:11:59.840 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:11:59.840 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:11:59.850 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:11:59.860 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:11:59.860 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-18 01:12:00.040 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:12:00.040 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:12:00.090 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:00.090 -07 000000480 INF: FPGA: Recv YRDPOS 127785
17-03-18 01:12:00.100 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:12:00.100 -07 000000461 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:00.100 -07 000000461 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 01:12:00.100 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec
17-03-18 01:12:01.050 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:01.050 -07 000000480 INF: FPGA: Recv YRDPOS 127785
17-03-18 01:12:01.060 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:01.060 -07 000000461 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:01.080 -07 000000461 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:12:01.080 -07 000000461 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:12:01.080 -07 000000461 INF: Y Motor: Moved to 62.3950 after 1443 ms (table move)
17-03-18 01:12:01.080 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176878 mm (DAC = 38639)
17-03-18 01:12:01.090 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:01.090 -07 000000455 INF: FPGA: Recv ZSGSRD 36824
17-03-18 01:12:01.100 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:01.100 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:01.100 -07 000000430 INF: FPGA: Recv ZSGSRD 36814
17-03-18 01:12:01.110 -07 000000576 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:01.110 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:01.110 -07 000000430 INF: FPGA: Recv ZSGSRD 36832
17-03-18 01:12:01.120 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:01.120 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:01.120 -07 000000430 INF: FPGA: Recv ZSGSRD 36824
17-03-18 01:12:01.130 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:01.130 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:01.130 -07 000000430 INF: FPGA: Recv ZSGSRD 36829
17-03-18 01:12:01.140 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:01.140 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:01.140 -07 000000430 INF: FPGA: Recv ZSGSRD 36821
17-03-18 01:12:01.150 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:01.150 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:01.150 -07 000000461 INF: FPGA: Recv ZSGSRD 36819
17-03-18 01:12:01.160 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:01.160 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:01.160 -07 000000461 INF: FPGA: Recv ZSGSRD 36821
17-03-18 01:12:01.170 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:01.170 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:01.170 -07 000000462 INF: FPGA: Recv ZSGSRD 36828
17-03-18 01:12:01.180 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:01.180 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:01.180 -07 000000461 INF: FPGA: Recv ZSGSRD 36831
17-03-18 01:12:01.190 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:01.190 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:01.190 -07 000000462 INF: FPGA: Recv ZPIEZORD 32846
17-03-18 01:12:01.200 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:01.200 -07 000000576 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.896 V. Piezo Error = -8.8 V.
17-03-18 01:12:01.200 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36824 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36824 (-176.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36814 (-175.9 uncal um), Max = 36832 (-176.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:12:01.200 -07 000000576 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36824, posNoise = 8, negNoise = 10
17-03-18 01:12:01.200 -07 000000576 INF: Z Motor: After move to -0.176878, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:01.200 -07 000000576 INF: Z Motor: Settle wait time = 1446 ms, measure time = 111 ms (allowed 150 ms), total time = 1557 ms
17-03-18 01:12:01.200 -07 000000576 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:12:01.220 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.018051,
17-03-18 01:12:01.240 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 01:12:01.240 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:12:01.240 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:01.240 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:01.240 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:01.240 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:01.240 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:12:01.240 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:01.240 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:12:01.240 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:12:01.250 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:12:01.250 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:12:01.260 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:12:01.260 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:12:01.260 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:12:01.300 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:12:01.600 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:12:01.600 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:12:01.610 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:12:01.610 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 01:12:01.640 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:12:01.640 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 01:12:01.640 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:12:01.730 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:12:01.730 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:01.740 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:12:01.740 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:12:01.840 -07 000000590 INF: Autofocus start
17-03-18 01:12:01.840 -07 000000590 INF: MeasureProfile start
17-03-18 01:12:01.840 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:01.840 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:01.850 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:12:01.850 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:12:01.850 -07 000000590 INF: MeasureProfile done
17-03-18 01:12:01.850 -07 000000590 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:12:01.850 -07 000000590 INF: Autofocus finished
17-03-18 01:12:02.050 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:12:02.050 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:12:02.050 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.17688853991934. ----------
17-03-18 01:12:02.050 -07 000000610 INF: Cycle	84	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:12:02.060 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37154, sync = True, waitForSettling = True)
17-03-18 01:12:02.060 -07 000000610 INF: Z Motor: Moving to -0.170080 mm, started at -0.176889 mm, distance = 6.81 um
17-03-18 01:12:02.060 -07 000000610 INF: FPGA: Xmit ZDACW 37154\n [Z Motor]
17-03-18 01:12:02.060 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:12:02.070 -07 000000610 INF: FPGA: 'ZDACW 37154' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:12:02.070 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:02.070 -07 000000579 INF: FPGA: Recv ZDACR 37154
17-03-18 01:12:02.080 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:02.080 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:12:02.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:02.230 -07 000000590 INF: FPGA: Recv ZSGSRD 35768
17-03-18 01:12:02.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:02.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:02.240 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:12:02.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:12:02.240 -07 000000579 INF: FPGA: Recv ZSGSRD 35770
17-03-18 01:12:02.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:02.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:02.250 -07 000000590 INF: FPGA: Recv ZSGSRD 35763
17-03-18 01:12:02.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:02.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:02.260 -07 000000579 INF: FPGA: Recv ZSGSRD 35763
17-03-18 01:12:02.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:02.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:02.270 -07 000000590 INF: FPGA: Recv ZSGSRD 35770
17-03-18 01:12:02.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:02.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:02.280 -07 000000579 INF: FPGA: Recv ZSGSRD 35763
17-03-18 01:12:02.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:02.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:02.290 -07 000000579 INF: FPGA: Recv ZSGSRD 35765
17-03-18 01:12:02.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:02.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:02.300 -07 000000590 INF: FPGA: Recv ZSGSRD 35766
17-03-18 01:12:02.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:02.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:02.310 -07 000000590 INF: FPGA: Recv ZSGSRD 35767
17-03-18 01:12:02.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:02.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:02.320 -07 000000579 INF: FPGA: Recv ZSGSRD 35763
17-03-18 01:12:02.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:02.330 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:02.330 -07 000000590 INF: FPGA: Recv ZPIEZORD 31480
17-03-18 01:12:02.340 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:02.340 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.669 V. Piezo Error = -9.4 V.
17-03-18 01:12:02.340 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35766 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35766 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35763 (-169.2 uncal um), Max = 35770 (-169.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:12:02.340 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35766, posNoise = 4, negNoise = 3
17-03-18 01:12:02.340 -07 000000610 INF: Z Motor: After move to -0.170080, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:02.340 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:12:02.340 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:02.340 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:02.340 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:02.340 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:02.340 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:12:02.340 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:02.340 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:12:02.340 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:12:02.340 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:12:02.340 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:12:02.340 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:12:02.340 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:12:02.350 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:12:02.350 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:12:02.350 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:12:02.350 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:12:02.360 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:12:02.360 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:12:02.360 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:12:02.360 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:12:02.360 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37331 150\n [Camera]
17-03-18 01:12:02.560 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:12:02.950 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:12:02.950 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:12:02.950 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:02.950 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:02.950 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1433403608, 0x0, 391868352) start.
17-03-18 01:12:02.950 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:12:02.950 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:12:02.950 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:02.950 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:02.960 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1468825872, 0x0, 418435064) start.
17-03-18 01:12:03.140 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37331 775
17-03-18 01:12:03.290 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:12:03.350 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1433403608, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:12:03.350 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:12:03.350 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:03.350 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:03.350 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:12:03.350 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1468825872, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:12:03.350 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:12:03.350 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:03.360 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:03.360 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:12:03.480 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:12:03.480 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:12:03.480 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:03.480 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:03.480 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:12:03.480 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:12:03.480 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:12:03.490 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:03.490 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:03.490 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:12:03.670 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:12:03.670 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:12:03.670 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37331 150' command took 2 ms to send, 1308 ms to get response, and 1313 ms overall
17-03-18 01:12:03.680 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:12:03.680 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170091723473357. ------
17-03-18 01:12:03.680 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:03.680 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17659 mm
17-03-18 01:12:03.680 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:12:03.800 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:03.800 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-18 01:12:03.800 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:12:03.800 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38576, sync = True, waitForSettling = False)
17-03-18 01:12:03.800 -07 000000576 INF: Z Motor: Moving to -0.176590 mm, started at -0.170092 mm, distance = -6.50 um
17-03-18 01:12:03.800 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:12:03.800 -07 000000590 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 01:12:03.810 -07 000000576 INF: FPGA: Xmit ZDACW 38576\n [Z Motor]
17-03-18 01:12:03.810 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:12:03.820 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:03.820 -07 000000576 INF: FPGA: 'ZDACW 38576' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:12:03.820 -07 000000462 INF: FPGA: Recv YRDPOS 127785
17-03-18 01:12:03.830 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:12:03.830 -07 000000590 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:03.830 -07 000000590 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:12:03.830 -07 000000590 INF: Y Motor: Moving 1340 steps-16
17-03-18 01:12:03.830 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:03.830 -07 000000592 INF: FPGA: Recv ZDACR 38576
17-03-18 01:12:03.840 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:12:03.840 -07 000000576 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 01:12:03.840 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:12:03.890 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:12:03.890 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:12:03.890 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:03.890 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:12:03.890 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:12:03.890 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:03.890 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:03.890 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:12:03.890 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:12:03.900 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:12:04.000 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:12:04.000 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 01:12:04.210 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 01:12:04.210 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:12:04.260 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:04.260 -07 000000579 INF: FPGA: Recv YRDPOS 129481
17-03-18 01:12:04.270 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:04.270 -07 000000590 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:04.270 -07 000000590 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:12:04.270 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-18 01:12:05.220 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:05.230 -07 000000430 INF: FPGA: Recv YRDPOS 129482
17-03-18 01:12:05.230 -07 000000590 INF: FPGA: 'YRDPOS' command took 8 ms to send, 1 ms to get response, and 11 ms overall
17-03-18 01:12:05.230 -07 000000590 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:05.260 -07 000000590 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:12:05.260 -07 000000590 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:12:05.260 -07 000000590 INF: Y Motor: Moved to 63.2236 after 1454 ms (table move)
17-03-18 01:12:05.260 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176590 mm (DAC = 38576)
17-03-18 01:12:05.260 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:05.260 -07 000000591 INF: FPGA: Recv ZSGSRD 36783
17-03-18 01:12:05.270 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:12:05.270 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:05.270 -07 000000579 INF: FPGA: Recv ZSGSRD 36782
17-03-18 01:12:05.280 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:05.280 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:05.280 -07 000000576 INF: FPGA: Recv ZSGSRD 36782
17-03-18 01:12:05.290 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:05.290 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:05.290 -07 000000579 INF: FPGA: Recv ZSGSRD 36779
17-03-18 01:12:05.300 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:05.300 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:05.300 -07 000000576 INF: FPGA: Recv ZSGSRD 36779
17-03-18 01:12:05.310 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:05.310 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:05.310 -07 000000592 INF: FPGA: Recv ZSGSRD 36784
17-03-18 01:12:05.320 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:05.320 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:05.320 -07 000000447 INF: FPGA: Recv ZSGSRD 36780
17-03-18 01:12:05.330 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:05.330 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:05.330 -07 000000576 INF: FPGA: Recv ZSGSRD 36770
17-03-18 01:12:05.340 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:05.340 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:05.340 -07 000000581 INF: FPGA: Recv ZSGSRD 36775
17-03-18 01:12:05.350 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:05.350 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:05.350 -07 000000591 INF: FPGA: Recv ZSGSRD 36777
17-03-18 01:12:05.360 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:05.360 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:05.360 -07 000000430 INF: FPGA: Recv ZPIEZORD 32856
17-03-18 01:12:05.370 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:05.370 -07 000000437 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.886 V. Piezo Error = -8.7 V.
17-03-18 01:12:05.370 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36779 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36780 (-175.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36770 (-175.7 uncal um), Max = 36784 (-175.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:12:05.370 -07 000000437 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36779, posNoise = 5, negNoise = 9
17-03-18 01:12:05.370 -07 000000437 INF: Z Motor: After move to -0.176590, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:05.370 -07 000000437 INF: Z Motor: Settle wait time = 1458 ms, measure time = 106 ms (allowed 150 ms), total time = 1564 ms
17-03-18 01:12:05.370 -07 000000437 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 01:12:05.420 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-18 01:12:05.420 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:12:05.430 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:05.430 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:05.430 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:05.430 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:05.430 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:12:05.430 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:05.430 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:05.430 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:12:05.440 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:12:05.440 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:12:05.440 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:12:05.440 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:12:05.450 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:12:05.490 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:12:05.790 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:12:05.790 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:12:05.790 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:12:05.790 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 01:12:05.830 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:12:05.830 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 01:12:05.830 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 01:12:05.910 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:12:05.910 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:05.910 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:12:05.910 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 01:12:05.930 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:05.930 -07 000000591 INF: Autofocus start
17-03-18 01:12:05.930 -07 000000591 INF: MeasureProfile start
17-03-18 01:12:05.940 -07 000000591 INF: MeasureProfile done
17-03-18 01:12:05.940 -07 000000591 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:12:05.940 -07 000000591 INF: Autofocus finished
17-03-18 01:12:05.950 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:05.950 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 12 ms to get response, and 16 ms overall
17-03-18 01:12:05.950 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:12:06.150 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:12:06.150 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:12:06.160 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.176599450372961. ----------
17-03-18 01:12:06.160 -07 000000610 INF: Cycle	84	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:12:06.160 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37109, sync = True, waitForSettling = True)
17-03-18 01:12:06.160 -07 000000610 INF: Z Motor: Moving to -0.169874 mm, started at -0.176599 mm, distance = 6.73 um
17-03-18 01:12:06.160 -07 000000610 INF: FPGA: Xmit ZDACW 37109\n [Z Motor]
17-03-18 01:12:06.160 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:12:06.170 -07 000000610 INF: FPGA: 'ZDACW 37109' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:12:06.170 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:06.170 -07 000000437 INF: FPGA: Recv ZDACR 37109
17-03-18 01:12:06.180 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:06.180 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:12:06.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:06.330 -07 000000437 INF: FPGA: Recv ZSGSRD 35738
17-03-18 01:12:06.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:06.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:06.340 -07 000000591 INF: FPGA: Recv ZSGSRD 35732
17-03-18 01:12:06.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:06.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:06.350 -07 000000591 INF: FPGA: Recv ZSGSRD 35731
17-03-18 01:12:06.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:06.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:06.360 -07 000000591 INF: FPGA: Recv ZSGSRD 35730
17-03-18 01:12:06.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:06.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:06.370 -07 000000437 INF: FPGA: Recv ZSGSRD 35736
17-03-18 01:12:06.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:06.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:06.380 -07 000000591 INF: FPGA: Recv ZSGSRD 35737
17-03-18 01:12:06.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:06.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:06.390 -07 000000455 INF: FPGA: Recv ZSGSRD 35733
17-03-18 01:12:06.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:06.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:06.400 -07 000000444 INF: FPGA: Recv ZSGSRD 35736
17-03-18 01:12:06.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:06.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:06.410 -07 000000461 INF: FPGA: Recv ZSGSRD 35737
17-03-18 01:12:06.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:06.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:06.420 -07 000000437 INF: FPGA: Recv ZSGSRD 35729
17-03-18 01:12:06.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:06.430 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:06.430 -07 000000591 INF: FPGA: Recv ZPIEZORD 31401
17-03-18 01:12:06.440 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:06.440 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.662 V. Piezo Error = -9.5 V.
17-03-18 01:12:06.440 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35734 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35734 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35729 (-169.0 uncal um), Max = 35738 (-169.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:12:06.440 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35734, posNoise = 4, negNoise = 5
17-03-18 01:12:06.440 -07 000000610 INF: Z Motor: After move to -0.169874, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:06.440 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:12:06.440 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:06.440 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:06.440 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:06.440 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:06.440 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:12:06.440 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:06.440 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:12:06.440 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:12:06.440 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:06.440 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:12:06.440 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:12:06.440 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:12:06.450 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:12:06.450 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:12:06.450 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:12:06.450 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:12:06.460 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:12:06.460 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:12:06.460 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:12:06.460 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:12:06.470 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37285 150\n [Camera]
17-03-18 01:12:06.580 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.016692,
17-03-18 01:12:06.670 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:12:07.060 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:12:07.060 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:12:07.060 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:07.060 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:12:07.060 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:12:07.060 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:07.060 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:07.060 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 01:12:07.060 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:07.060 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:12:07.240 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:12:07.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:12:07.250 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37285 778
17-03-18 01:12:07.400 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:12:07.460 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:12:07.460 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:12:07.460 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:07.460 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:12:07.460 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:12:07.460 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:07.460 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:07.460 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:12:07.460 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:07.470 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:12:07.590 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:12:07.590 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:12:07.590 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:07.590 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:12:07.590 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:12:07.590 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:07.710 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:07.710 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2617245512, 0x0, 418435064) start.
17-03-18 01:12:07.710 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:07.710 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) start.
17-03-18 01:12:07.780 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:12:07.780 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:12:07.780 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37285 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:12:07.780 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:12:07.780 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.169886148684821. ------
17-03-18 01:12:07.790 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:07.790 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17642 mm
17-03-18 01:12:07.790 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:12:07.790 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:07.790 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:12:07.790 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38539, sync = True, waitForSettling = False)
17-03-18 01:12:07.790 -07 000000444 INF: Z Motor: Moving to -0.176420 mm, started at -0.169886 mm, distance = -6.53 um
17-03-18 01:12:07.790 -07 000000480 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 01:12:07.800 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:07.800 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:07.800 -07 000000437 INF: FPGA: Recv YRDPOS 129482
17-03-18 01:12:07.810 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:12:07.810 -07 000000480 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:07.810 -07 000000480 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:12:07.810 -07 000000480 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:12:07.810 -07 000000444 INF: FPGA: Xmit ZDACW 38539\n [Z Motor]
17-03-18 01:12:07.810 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:12:07.820 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:12:07.820 -07 000000444 INF: FPGA: 'ZDACW 38539' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:12:07.830 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:12:07.840 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:07.840 -07 000000591 INF: FPGA: Recv ZDACR 38539
17-03-18 01:12:07.850 -07 000000444 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:12:07.850 -07 000000444 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 01:12:08.020 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:12:08.020 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall
17-03-18 01:12:08.110 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2617245512, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:12:08.110 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:12:08.110 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:08.110 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:12:08.110 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:12:08.110 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:08.110 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:12:08.110 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:12:08.110 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 01:12:08.120 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-18 01:12:08.200 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:12:08.200 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:12:08.240 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:09.220 -07 000000462 INF: FPGA: Recv YRDPOS 131187
17-03-18 01:12:09.220 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 970 ms to get response, and 971 ms overall
17-03-18 01:12:09.220 -07 000000480 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:09.220 -07 000000480 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 01:12:09.220 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-18 01:12:10.170 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:10.170 -07 000000462 INF: FPGA: Recv YRDPOS 131187
17-03-18 01:12:10.180 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:10.180 -07 000000480 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:10.200 -07 000000480 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:12:10.200 -07 000000480 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:12:10.200 -07 000000480 INF: Y Motor: Moved to 64.0562 after 2412 ms (table move)
17-03-18 01:12:10.200 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176420 mm (DAC = 38539)
17-03-18 01:12:10.200 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:10.210 -07 000000462 INF: FPGA: Recv ZSGSRD 36761
17-03-18 01:12:10.210 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:12:10.210 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:10.210 -07 000000480 INF: FPGA: Recv ZSGSRD 36751
17-03-18 01:12:10.220 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:12:10.220 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:10.220 -07 000000480 INF: FPGA: Recv ZSGSRD 36746
17-03-18 01:12:10.230 -07 000000590 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:10.230 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:10.230 -07 000000462 INF: FPGA: Recv ZSGSRD 36752
17-03-18 01:12:10.240 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:10.240 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:10.240 -07 000000480 INF: FPGA: Recv ZSGSRD 36752
17-03-18 01:12:10.250 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:10.250 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:10.250 -07 000000462 INF: FPGA: Recv ZSGSRD 36747
17-03-18 01:12:10.260 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:10.260 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:10.260 -07 000000444 INF: FPGA: Recv ZSGSRD 36750
17-03-18 01:12:10.270 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:10.270 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:10.270 -07 000000462 INF: FPGA: Recv ZSGSRD 36746
17-03-18 01:12:10.280 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:10.280 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:10.280 -07 000000480 INF: FPGA: Recv ZSGSRD 36753
17-03-18 01:12:10.290 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:10.290 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:10.290 -07 000000455 INF: FPGA: Recv ZSGSRD 36754
17-03-18 01:12:10.300 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:10.300 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:10.300 -07 000000480 INF: FPGA: Recv ZPIEZORD 32766
17-03-18 01:12:10.310 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:10.310 -07 000000590 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.8 V.
17-03-18 01:12:10.310 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36751 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36752 (-175.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36746 (-175.5 uncal um), Max = 36761 (-175.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:12:10.310 -07 000000590 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36751, posNoise = 10, negNoise = 5
17-03-18 01:12:10.310 -07 000000590 INF: Z Motor: After move to -0.176420, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:10.310 -07 000000590 INF: Z Motor: Settle wait time = 2415 ms, measure time = 101 ms (allowed 150 ms), total time = 2516 ms
17-03-18 01:12:10.310 -07 000000590 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:12:10.360 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2569 ms
17-03-18 01:12:10.360 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:12:10.360 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:10.360 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:10.360 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:10.360 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:10.360 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:12:10.360 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:10.370 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:12:10.370 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:12:10.370 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:12:10.370 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:12:10.380 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 01:12:10.380 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:12:10.380 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:12:10.430 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 01:12:10.730 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 01:12:10.730 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 01:12:10.730 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:12:10.730 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606601088, 0x0, 559484976) start.
17-03-18 01:12:10.760 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:12:10.760 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 01:12:10.760 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:12:10.850 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606601088, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 01:12:10.850 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:10.850 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:12:10.850 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 01:12:10.860 -07 000000590 INF: Autofocus start
17-03-18 01:12:10.860 -07 000000590 INF: MeasureProfile start
17-03-18 01:12:10.860 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:10.860 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:10.870 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:12:10.870 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:12:10.870 -07 000000590 INF: MeasureProfile done
17-03-18 01:12:10.870 -07 000000590 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:12:10.870 -07 000000590 INF: Autofocus finished
17-03-18 01:12:11.070 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:12:11.070 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:12:11.070 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.176419572432992. ----------
17-03-18 01:12:11.070 -07 000000610 INF: Cycle	84	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:12:11.080 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37036, sync = True, waitForSettling = True)
17-03-18 01:12:11.080 -07 000000610 INF: Z Motor: Moving to -0.169540 mm, started at -0.176420 mm, distance = 6.88 um
17-03-18 01:12:11.080 -07 000000610 INF: FPGA: Xmit ZDACW 37036\n [Z Motor]
17-03-18 01:12:11.080 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:12:11.090 -07 000000610 INF: FPGA: 'ZDACW 37036' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:12:11.090 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:11.090 -07 000000430 INF: FPGA: Recv ZDACR 37036
17-03-18 01:12:11.100 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:11.100 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:12:11.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:11.250 -07 000000480 INF: FPGA: Recv ZSGSRD 35679
17-03-18 01:12:11.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:11.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:11.260 -07 000000430 INF: FPGA: Recv ZSGSRD 35678
17-03-18 01:12:11.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:11.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:11.270 -07 000000462 INF: FPGA: Recv ZSGSRD 35680
17-03-18 01:12:11.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:11.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:11.280 -07 000000592 INF: FPGA: Recv ZSGSRD 35685
17-03-18 01:12:11.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:11.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:11.290 -07 000000480 INF: FPGA: Recv ZSGSRD 35675
17-03-18 01:12:11.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:11.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:11.300 -07 000000590 INF: FPGA: Recv ZSGSRD 35687
17-03-18 01:12:11.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:11.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:11.310 -07 000000447 INF: FPGA: Recv ZSGSRD 35681
17-03-18 01:12:11.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:11.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:11.320 -07 000000430 INF: FPGA: Recv ZSGSRD 35682
17-03-18 01:12:11.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:11.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:11.330 -07 000000480 INF: FPGA: Recv ZSGSRD 35683
17-03-18 01:12:11.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:11.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:11.340 -07 000000590 INF: FPGA: Recv ZSGSRD 35672
17-03-18 01:12:11.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:11.350 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:11.350 -07 000000444 INF: FPGA: Recv ZPIEZORD 31333
17-03-18 01:12:11.360 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:11.360 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -9.6 V.
17-03-18 01:12:11.360 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35680 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35680 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35672 (-168.6 uncal um), Max = 35687 (-168.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:12:11.360 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35680, posNoise = 7, negNoise = 8
17-03-18 01:12:11.360 -07 000000610 INF: Z Motor: After move to -0.169540, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:11.360 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:12:11.360 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:11.360 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:11.360 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:11.360 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:11.360 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:12:11.360 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:11.360 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:12:11.360 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:12:11.360 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:12:11.360 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:12:11.360 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:12:11.360 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:12:11.370 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:12:11.370 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:12:11.370 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:12:11.370 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:12:11.380 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:12:11.380 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:12:11.380 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:12:11.380 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:12:11.390 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37213 150\n [Camera]
17-03-18 01:12:11.590 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:12:11.940 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.978563,
17-03-18 01:12:11.980 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:12:11.980 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:12:11.980 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:11.980 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:12:11.980 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:12:11.980 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:11.980 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:11.980 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:12:11.980 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:11.980 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:12:12.170 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37213 775
17-03-18 01:12:12.240 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:12:12.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:12:12.320 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:12:12.380 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:12:12.380 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:12:12.380 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:12.380 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:12:12.380 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:12:12.380 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:12.380 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:12:12.380 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:12:12.380 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:12.390 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:12:12.510 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:12:12.510 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:12:12.510 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:12.510 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:12.510 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:12:12.510 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:12:12.510 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:12:12.510 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:12.510 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:12.510 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 01:12:12.700 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:12:12.700 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:12:12.700 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37213 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:12:12.700 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:12:12.700 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.169539241229166. ------
17-03-18 01:12:12.700 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:12.700 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17600 mm
17-03-18 01:12:12.700 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:12:12.710 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:12.710 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 01:12:12.710 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:12:12.710 -07 000000576 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 01:12:12.710 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:12.710 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38448, sync = True, waitForSettling = False)
17-03-18 01:12:12.710 -07 000000444 INF: Z Motor: Moving to -0.176004 mm, started at -0.169539 mm, distance = -6.46 um
17-03-18 01:12:12.710 -07 000000591 INF: FPGA: Recv YRDPOS 131188
17-03-18 01:12:12.720 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:12:12.720 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:12:12.720 -07 000000576 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:12.720 -07 000000576 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:12:12.720 -07 000000576 INF: Y Motor: Moving 1338 steps-13
17-03-18 01:12:12.730 -07 000000444 INF: FPGA: Xmit ZDACW 38448\n [Z Motor]
17-03-18 01:12:12.730 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:12:12.740 -07 000000444 INF: FPGA: 'ZDACW 38448' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:12:12.740 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:12:12.750 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:12.750 -07 000000581 INF: FPGA: Recv ZDACR 38448
17-03-18 01:12:12.760 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:12:12.760 -07 000000444 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:12:12.910 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 01:12:12.910 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:12:12.910 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:12.910 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 01:12:12.910 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:12:12.910 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:12.920 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:12.920 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:12:12.920 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 01:12:12.920 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:12:12.920 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:12:12.930 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:12:13.110 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 01:12:13.110 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 01:12:13.160 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:13.160 -07 000000480 INF: FPGA: Recv YRDPOS 132870
17-03-18 01:12:13.170 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:13.170 -07 000000576 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:13.170 -07 000000576 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:12:13.170 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.836 mm, average velocity = 2.128 mm/sec
17-03-18 01:12:14.120 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:14.120 -07 000000480 INF: FPGA: Recv YRDPOS 132870
17-03-18 01:12:14.130 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:14.130 -07 000000576 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:14.150 -07 000000576 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:12:14.150 -07 000000576 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:12:14.150 -07 000000576 INF: Y Motor: Moved to 64.8779 after 1445 ms (table move)
17-03-18 01:12:14.160 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176004 mm (DAC = 38448)
17-03-18 01:12:14.160 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:14.160 -07 000000462 INF: FPGA: Recv ZSGSRD 36688
17-03-18 01:12:14.170 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:12:14.170 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:14.170 -07 000000576 INF: FPGA: Recv ZSGSRD 36688
17-03-18 01:12:14.180 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:14.180 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:14.180 -07 000000437 INF: FPGA: Recv ZSGSRD 36692
17-03-18 01:12:14.190 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:14.190 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:14.190 -07 000000462 INF: FPGA: Recv ZSGSRD 36689
17-03-18 01:12:14.200 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:14.200 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:14.200 -07 000000576 INF: FPGA: Recv ZSGSRD 36686
17-03-18 01:12:14.210 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:14.210 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:14.210 -07 000000462 INF: FPGA: Recv ZSGSRD 36688
17-03-18 01:12:14.220 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:14.220 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:14.220 -07 000000576 INF: FPGA: Recv ZSGSRD 36690
17-03-18 01:12:14.230 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:14.230 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:14.230 -07 000000480 INF: FPGA: Recv ZSGSRD 36682
17-03-18 01:12:14.240 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:14.240 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:14.240 -07 000000462 INF: FPGA: Recv ZSGSRD 36686
17-03-18 01:12:14.250 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:14.250 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:14.250 -07 000000576 INF: FPGA: Recv ZSGSRD 36690
17-03-18 01:12:14.260 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:14.260 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:14.260 -07 000000462 INF: FPGA: Recv ZPIEZORD 32705
17-03-18 01:12:14.270 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:14.270 -07 000000455 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.867 V. Piezo Error = -8.8 V.
17-03-18 01:12:14.270 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36688 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36688 (-175.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36682 (-175.1 uncal um), Max = 36692 (-175.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:12:14.270 -07 000000455 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36688, posNoise = 4, negNoise = 6
17-03-18 01:12:14.270 -07 000000455 INF: Z Motor: After move to -0.176004, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:14.270 -07 000000455 INF: Z Motor: Settle wait time = 1447 ms, measure time = 110 ms (allowed 150 ms), total time = 1557 ms
17-03-18 01:12:14.270 -07 000000455 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:12:14.310 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 01:12:14.310 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:12:14.310 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:14.310 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:14.310 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:14.310 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:14.310 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:12:14.310 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:14.310 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:14.310 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:12:14.320 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:12:14.320 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:12:14.330 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:12:14.330 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:12:14.330 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:12:14.380 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:12:14.680 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:12:14.680 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:12:14.680 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:12:14.680 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 01:12:14.720 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:12:14.720 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 01:12:14.720 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:12:14.810 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 01:12:14.810 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:14.810 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:12:14.810 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 01:12:14.820 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:14.820 -07 000000480 INF: Autofocus start
17-03-18 01:12:14.820 -07 000000480 INF: MeasureProfile start
17-03-18 01:12:14.830 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:14.830 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:12:14.830 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:12:14.830 -07 000000480 INF: MeasureProfile done
17-03-18 01:12:14.830 -07 000000480 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:12:14.830 -07 000000480 INF: Autofocus finished
17-03-18 01:12:15.030 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:12:15.030 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 01:12:15.030 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.176014847068061. ----------
17-03-18 01:12:15.040 -07 000000610 INF: Cycle	84	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:12:15.040 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36945, sync = True, waitForSettling = True)
17-03-18 01:12:15.040 -07 000000610 INF: Z Motor: Moving to -0.169123 mm, started at -0.176015 mm, distance = 6.89 um
17-03-18 01:12:15.040 -07 000000610 INF: FPGA: Xmit ZDACW 36945\n [Z Motor]
17-03-18 01:12:15.040 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:12:15.050 -07 000000610 INF: FPGA: 'ZDACW 36945' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:12:15.050 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:15.050 -07 000000455 INF: FPGA: Recv ZDACR 36945
17-03-18 01:12:15.060 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:15.060 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:12:15.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:15.210 -07 000000480 INF: FPGA: Recv ZSGSRD 35619
17-03-18 01:12:15.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:15.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:15.220 -07 000000437 INF: FPGA: Recv ZSGSRD 35623
17-03-18 01:12:15.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:15.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:15.230 -07 000000462 INF: FPGA: Recv ZSGSRD 35618
17-03-18 01:12:15.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:15.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:15.240 -07 000000437 INF: FPGA: Recv ZSGSRD 35619
17-03-18 01:12:15.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:15.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:15.250 -07 000000455 INF: FPGA: Recv ZSGSRD 35614
17-03-18 01:12:15.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:15.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:15.260 -07 000000576 INF: FPGA: Recv ZSGSRD 35614
17-03-18 01:12:15.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:15.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:15.270 -07 000000576 INF: FPGA: Recv ZSGSRD 35618
17-03-18 01:12:15.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:15.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:15.280 -07 000000437 INF: FPGA: Recv ZSGSRD 35615
17-03-18 01:12:15.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:15.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:15.290 -07 000000455 INF: FPGA: Recv ZSGSRD 35620
17-03-18 01:12:15.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:15.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:15.300 -07 000000455 INF: FPGA: Recv ZSGSRD 35617
17-03-18 01:12:15.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:15.310 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:15.310 -07 000000455 INF: FPGA: Recv ZPIEZORD 31279
17-03-18 01:12:15.320 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:15.320 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.6 V.
17-03-18 01:12:15.320 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35618 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35618 (-168.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35614 (-168.2 uncal um), Max = 35623 (-168.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:12:15.320 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35618, posNoise = 5, negNoise = 4
17-03-18 01:12:15.320 -07 000000610 INF: Z Motor: After move to -0.169123, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:15.320 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:12:15.320 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:15.320 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:15.320 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:15.320 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:15.320 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:12:15.320 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:12:15.320 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:12:15.320 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:15.320 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:12:15.320 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:12:15.320 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:15.320 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:12:15.330 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:12:15.330 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:12:15.330 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:12:15.330 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:12:15.340 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:12:15.340 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:12:15.340 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:12:15.340 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:12:15.350 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37122 150\n [Camera]
17-03-18 01:12:15.550 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:12:15.940 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:12:15.940 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:12:15.940 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:15.940 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:15.940 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:12:15.940 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:12:15.940 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:12:15.940 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:15.940 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:15.940 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 01:12:16.130 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37122 775
17-03-18 01:12:16.280 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:12:16.330 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:12:16.340 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:12:16.340 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:16.340 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:16.340 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:12:16.340 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:12:16.340 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:12:16.340 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:16.340 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:16.350 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:12:16.470 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:12:16.470 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:12:16.470 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:16.580 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:12:16.580 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:12:16.580 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:16.580 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 01:12:16.580 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:16.590 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:16.590 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:12:16.660 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:12:16.660 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:12:16.660 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37122 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-18 01:12:16.660 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:12:16.660 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.169140940076377. ------
17-03-18 01:12:16.660 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17572 mm
17-03-18 01:12:16.660 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:12:16.670 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:16.670 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 38387, sync = True, waitForSettling = False)
17-03-18 01:12:16.670 -07 000000437 INF: Z Motor: Moving to -0.175724 mm, started at -0.169141 mm, distance = -6.58 um
17-03-18 01:12:16.670 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:12:16.670 -07 000000579 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 01:12:16.670 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:16.680 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:16.680 -07 000000437 INF: FPGA: Xmit ZDACW 38387\n [Z Motor]
17-03-18 01:12:16.680 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:12:16.690 -07 000000437 INF: FPGA: 'ZDACW 38387' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:12:16.690 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:16.690 -07 000000462 INF: FPGA: Recv YRDPOS 132871
17-03-18 01:12:16.700 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:12:16.700 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:12:16.700 -07 000000579 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:16.700 -07 000000579 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:12:16.700 -07 000000579 INF: Y Motor: Moving 1351 steps-30
17-03-18 01:12:16.710 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:16.710 -07 000000447 INF: FPGA: Recv ZDACR 38387
17-03-18 01:12:16.720 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:12:16.720 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:12:16.720 -07 000000437 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 01:12:16.900 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:12:16.900 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:12:16.980 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 01:12:16.980 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:12:16.980 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:16.980 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:16.980 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:12:16.980 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:12:16.980 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:16.990 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:16.990 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-18 01:12:16.990 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:12:17.090 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 01:12:17.090 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 01:12:17.130 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:17.140 -07 000000430 INF: FPGA: Recv YRDPOS 134581
17-03-18 01:12:17.150 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:17.150 -07 000000579 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:17.150 -07 000000579 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:12:17.150 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.155 mm/sec
17-03-18 01:12:17.240 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:12:17.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:12:17.300 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.999021,
17-03-18 01:12:18.100 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:18.100 -07 000000430 INF: FPGA: Recv YRDPOS 134581
17-03-18 01:12:18.110 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:18.110 -07 000000579 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:18.140 -07 000000579 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:12:18.140 -07 000000579 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:12:18.140 -07 000000579 INF: Y Motor: Moved to 65.7134 after 1468 ms (table move)
17-03-18 01:12:18.140 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175724 mm (DAC = 38387)
17-03-18 01:12:18.140 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:18.140 -07 000000430 INF: FPGA: Recv ZSGSRD 36645
17-03-18 01:12:18.150 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:12:18.150 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:18.150 -07 000000430 INF: FPGA: Recv ZSGSRD 36639
17-03-18 01:12:18.160 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:18.160 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:18.160 -07 000000461 INF: FPGA: Recv ZSGSRD 36653
17-03-18 01:12:18.170 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:18.170 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:18.170 -07 000000447 INF: FPGA: Recv ZSGSRD 36645
17-03-18 01:12:18.180 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:18.180 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:18.180 -07 000000430 INF: FPGA: Recv ZSGSRD 36643
17-03-18 01:12:18.190 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:18.190 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:18.190 -07 000000579 INF: FPGA: Recv ZSGSRD 36643
17-03-18 01:12:18.200 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:18.200 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:18.200 -07 000000461 INF: FPGA: Recv ZSGSRD 36640
17-03-18 01:12:18.210 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:18.210 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:18.210 -07 000000447 INF: FPGA: Recv ZSGSRD 36643
17-03-18 01:12:18.220 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:18.220 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:18.220 -07 000000461 INF: FPGA: Recv ZSGSRD 36642
17-03-18 01:12:18.230 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:18.230 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:18.230 -07 000000579 INF: FPGA: Recv ZSGSRD 36646
17-03-18 01:12:18.240 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:18.240 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:18.240 -07 000000430 INF: FPGA: Recv ZPIEZORD 32659
17-03-18 01:12:18.250 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:18.250 -07 000000592 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.857 V. Piezo Error = -8.8 V.
17-03-18 01:12:18.250 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36644 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36643 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36639 (-174.8 uncal um), Max = 36653 (-174.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:12:18.250 -07 000000592 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36644, posNoise = 9, negNoise = 5
17-03-18 01:12:18.250 -07 000000592 INF: Z Motor: After move to -0.175724, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:18.250 -07 000000592 INF: Z Motor: Settle wait time = 1472 ms, measure time = 105 ms (allowed 150 ms), total time = 1577 ms
17-03-18 01:12:18.250 -07 000000592 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 01:12:18.300 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 01:12:18.300 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:12:18.300 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:18.300 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:18.300 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:18.300 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:18.300 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:12:18.300 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:18.300 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:18.300 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:12:18.310 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:12:18.310 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:12:18.320 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:12:18.320 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:12:18.320 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:12:18.370 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:12:18.670 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:12:18.670 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:12:18.670 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:12:18.670 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 01:12:18.710 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:12:18.710 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:12:18.710 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall
17-03-18 01:12:18.800 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:12:18.800 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:18.800 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:12:18.800 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:12:18.810 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:18.810 -07 000000461 INF: Autofocus start
17-03-18 01:12:18.810 -07 000000461 INF: MeasureProfile start
17-03-18 01:12:18.810 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:18.820 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:12:18.820 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:12:18.820 -07 000000461 INF: MeasureProfile done
17-03-18 01:12:18.820 -07 000000461 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:12:18.820 -07 000000461 INF: Autofocus finished
17-03-18 01:12:19.020 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:12:19.020 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 01:12:19.020 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175732181733823. ----------
17-03-18 01:12:19.030 -07 000000610 INF: Cycle	84	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:12:19.030 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36919, sync = True, waitForSettling = True)
17-03-18 01:12:19.030 -07 000000610 INF: Z Motor: Moving to -0.169004 mm, started at -0.175732 mm, distance = 6.73 um
17-03-18 01:12:19.030 -07 000000610 INF: FPGA: Xmit ZDACW 36919\n [Z Motor]
17-03-18 01:12:19.030 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:12:19.040 -07 000000610 INF: FPGA: 'ZDACW 36919' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:12:19.040 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:19.040 -07 000000447 INF: FPGA: Recv ZDACR 36919
17-03-18 01:12:19.050 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:19.050 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:12:19.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:19.200 -07 000000461 INF: FPGA: Recv ZSGSRD 35600
17-03-18 01:12:19.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:19.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:19.210 -07 000000579 INF: FPGA: Recv ZSGSRD 35604
17-03-18 01:12:19.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:19.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:19.230 -07 000000579 INF: FPGA: Recv ZSGSRD 35598
17-03-18 01:12:19.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 5 ms to send, 1 ms to get response, and 11 ms overall
17-03-18 01:12:19.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:19.230 -07 000000430 INF: FPGA: Recv ZSGSRD 35601
17-03-18 01:12:19.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:12:19.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:19.240 -07 000000579 INF: FPGA: Recv ZSGSRD 35595
17-03-18 01:12:19.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:19.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:19.250 -07 000000430 INF: FPGA: Recv ZSGSRD 35599
17-03-18 01:12:19.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:19.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:19.260 -07 000000461 INF: FPGA: Recv ZSGSRD 35596
17-03-18 01:12:19.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:19.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:19.270 -07 000000447 INF: FPGA: Recv ZSGSRD 35599
17-03-18 01:12:19.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:19.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:19.280 -07 000000461 INF: FPGA: Recv ZSGSRD 35596
17-03-18 01:12:19.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:19.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:19.290 -07 000000447 INF: FPGA: Recv ZSGSRD 35597
17-03-18 01:12:19.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:19.300 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:19.300 -07 000000579 INF: FPGA: Recv ZPIEZORD 31259
17-03-18 01:12:19.310 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:19.310 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -9.6 V.
17-03-18 01:12:19.310 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35598 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35598 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35595 (-168.1 uncal um), Max = 35604 (-168.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:12:19.310 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35598, posNoise = 6, negNoise = 3
17-03-18 01:12:19.310 -07 000000610 INF: Z Motor: After move to -0.169004, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:19.310 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-18 01:12:19.310 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:19.310 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:19.320 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:19.320 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:19.320 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:12:19.320 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:19.320 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:12:19.320 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:12:19.320 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:12:19.320 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:12:19.320 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:12:19.320 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:12:19.320 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:12:19.320 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:12:19.320 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:12:19.320 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:12:19.330 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:12:19.330 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:12:19.330 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:12:19.330 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:12:19.330 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37096 150\n [Camera]
17-03-18 01:12:19.530 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:12:19.920 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:12:19.920 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:12:19.920 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:19.930 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:19.930 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) start.
17-03-18 01:12:19.930 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:12:19.930 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:12:19.930 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:19.930 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:19.930 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-18 01:12:20.110 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37096 775
17-03-18 01:12:20.260 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:12:20.320 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:12:20.320 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:12:20.320 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:20.320 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:20.320 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:12:20.320 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:12:20.330 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:12:20.330 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:20.330 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:20.340 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 01:12:20.460 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-18 01:12:20.460 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-18 01:12:20.460 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:20.570 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:12:20.570 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:12:20.570 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:20.580 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:20.580 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:20.580 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2567016040, 0x0, 418435064) start.
17-03-18 01:12:20.580 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:12:20.640 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:12:20.640 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:12:20.640 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37096 150' command took 2 ms to send, 1309 ms to get response, and 1312 ms overall
17-03-18 01:12:20.650 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:12:20.650 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169012455833541. ------
17-03-18 01:12:20.650 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:20.650 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17536 mm
17-03-18 01:12:20.650 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:12:20.650 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:12:20.650 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38307, sync = True, waitForSettling = False)
17-03-18 01:12:20.650 -07 000000579 INF: Z Motor: Moving to -0.175358 mm, started at -0.169012 mm, distance = -6.35 um
17-03-18 01:12:20.650 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:20.650 -07 000000591 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 01:12:20.660 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:12:20.660 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:20.660 -07 000000581 INF: FPGA: Recv YRDPOS 134581
17-03-18 01:12:20.670 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:20.670 -07 000000591 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:20.670 -07 000000591 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:12:20.670 -07 000000591 INF: Y Motor: Moving 1343 steps-19
17-03-18 01:12:20.670 -07 000000579 INF: FPGA: Xmit ZDACW 38307\n [Z Motor]
17-03-18 01:12:20.670 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:12:20.680 -07 000000579 INF: FPGA: 'ZDACW 38307' command took 3 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 01:12:20.680 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:12:20.690 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:12:20.700 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:20.700 -07 000000592 INF: FPGA: Recv ZDACR 38307
17-03-18 01:12:20.710 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:12:20.710 -07 000000579 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 01:12:20.880 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:12:20.880 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:12:20.950 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2567016040, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 01:12:20.950 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 01:12:20.960 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:20.960 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:20.960 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:12:20.960 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:12:20.960 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:20.960 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:12:20.970 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:20.970 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-18 01:12:21.060 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 01:12:21.060 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:12:21.110 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:21.110 -07 000000447 INF: FPGA: Recv YRDPOS 136270
17-03-18 01:12:21.120 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:21.120 -07 000000591 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:21.120 -07 000000591 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:12:21.120 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 01:12:22.070 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:22.070 -07 000000576 INF: FPGA: Recv YRDPOS 136270
17-03-18 01:12:22.080 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:22.080 -07 000000591 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:22.100 -07 000000591 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:12:22.100 -07 000000591 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:12:22.100 -07 000000591 INF: Y Motor: Moved to 66.5381 after 1449 ms (table move)
17-03-18 01:12:22.110 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175358 mm (DAC = 38307)
17-03-18 01:12:22.110 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:22.110 -07 000000592 INF: FPGA: Recv ZSGSRD 36591
17-03-18 01:12:22.120 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:12:22.120 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:22.120 -07 000000592 INF: FPGA: Recv ZSGSRD 36592
17-03-18 01:12:22.130 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:22.130 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:22.130 -07 000000592 INF: FPGA: Recv ZSGSRD 36593
17-03-18 01:12:22.140 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:22.140 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:22.140 -07 000000592 INF: FPGA: Recv ZSGSRD 36593
17-03-18 01:12:22.150 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:22.150 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:22.150 -07 000000447 INF: FPGA: Recv ZSGSRD 36586
17-03-18 01:12:22.160 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:22.160 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:22.160 -07 000000447 INF: FPGA: Recv ZSGSRD 36590
17-03-18 01:12:22.170 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:22.170 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:22.170 -07 000000447 INF: FPGA: Recv ZSGSRD 36586
17-03-18 01:12:22.180 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:22.180 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:22.180 -07 000000447 INF: FPGA: Recv ZSGSRD 36581
17-03-18 01:12:22.190 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:22.190 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:22.190 -07 000000447 INF: FPGA: Recv ZSGSRD 36589
17-03-18 01:12:22.200 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:22.200 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:22.200 -07 000000447 INF: FPGA: Recv ZSGSRD 36592
17-03-18 01:12:22.210 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:22.210 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:22.210 -07 000000461 INF: FPGA: Recv ZPIEZORD 32579
17-03-18 01:12:22.220 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:22.220 -07 000000462 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.845 V. Piezo Error = -8.9 V.
17-03-18 01:12:22.220 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36589 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36590 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36581 (-174.4 uncal um), Max = 36593 (-174.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:12:22.220 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36589, posNoise = 4, negNoise = 8
17-03-18 01:12:22.220 -07 000000462 INF: Z Motor: After move to -0.175358, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:22.220 -07 000000462 INF: Z Motor: Settle wait time = 1453 ms, measure time = 108 ms (allowed 150 ms), total time = 1561 ms
17-03-18 01:12:22.220 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:12:22.240 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:12:22.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:12:22.270 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 01:12:22.270 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:12:22.270 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:22.270 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:22.270 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:22.270 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:22.270 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:12:22.270 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:22.280 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:12:22.280 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:12:22.280 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:12:22.280 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:12:22.280 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:12:22.280 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:12:22.290 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:12:22.330 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:12:22.630 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:12:22.630 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:12:22.630 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:12:22.630 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2619313368, 0x0, 559484976) start.
17-03-18 01:12:22.660 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.996267,
17-03-18 01:12:22.670 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:12:22.670 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 01:12:22.670 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:12:22.750 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2619313368, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:12:22.750 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:22.750 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:12:22.750 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:12:22.770 -07 000000462 INF: Autofocus start
17-03-18 01:12:22.770 -07 000000462 INF: MeasureProfile start
17-03-18 01:12:22.770 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:22.770 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:22.780 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:12:22.780 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:12:22.780 -07 000000462 INF: MeasureProfile done
17-03-18 01:12:22.780 -07 000000462 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:12:22.780 -07 000000462 INF: Autofocus finished
17-03-18 01:12:22.980 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:12:22.980 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 01:12:22.990 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175378850066027. ----------
17-03-18 01:12:22.990 -07 000000610 INF: Cycle	84	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:12:22.990 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36839, sync = True, waitForSettling = True)
17-03-18 01:12:22.990 -07 000000610 INF: Z Motor: Moving to -0.168638 mm, started at -0.175379 mm, distance = 6.74 um
17-03-18 01:12:22.990 -07 000000610 INF: FPGA: Xmit ZDACW 36839\n [Z Motor]
17-03-18 01:12:22.990 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:12:23.000 -07 000000610 INF: FPGA: 'ZDACW 36839' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:12:23.000 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:23.000 -07 000000461 INF: FPGA: Recv ZDACR 36839
17-03-18 01:12:23.010 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:23.010 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:12:23.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:23.160 -07 000000455 INF: FPGA: Recv ZSGSRD 35540
17-03-18 01:12:23.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:23.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:23.170 -07 000000462 INF: FPGA: Recv ZSGSRD 35547
17-03-18 01:12:23.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:23.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:23.180 -07 000000455 INF: FPGA: Recv ZSGSRD 35545
17-03-18 01:12:23.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:23.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:23.190 -07 000000462 INF: FPGA: Recv ZSGSRD 35539
17-03-18 01:12:23.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:23.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:23.200 -07 000000447 INF: FPGA: Recv ZSGSRD 35540
17-03-18 01:12:23.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:23.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:23.210 -07 000000462 INF: FPGA: Recv ZSGSRD 35543
17-03-18 01:12:23.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:23.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:23.220 -07 000000447 INF: FPGA: Recv ZSGSRD 35543
17-03-18 01:12:23.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:12:23.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:23.240 -07 000000461 INF: FPGA: Recv ZSGSRD 35534
17-03-18 01:12:23.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 5 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:12:23.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:23.240 -07 000000455 INF: FPGA: Recv ZSGSRD 35543
17-03-18 01:12:23.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:23.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:23.250 -07 000000447 INF: FPGA: Recv ZSGSRD 35541
17-03-18 01:12:23.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:23.260 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:23.260 -07 000000462 INF: FPGA: Recv ZPIEZORD 31213
17-03-18 01:12:23.270 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:23.270 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.5 V.
17-03-18 01:12:23.270 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35542 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35542 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35534 (-167.7 uncal um), Max = 35547 (-167.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:12:23.270 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35542, posNoise = 5, negNoise = 8
17-03-18 01:12:23.270 -07 000000610 INF: Z Motor: After move to -0.168638, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:23.270 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:12:23.270 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:23.270 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:23.270 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:23.270 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:23.270 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:12:23.270 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:23.270 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:12:23.270 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:12:23.270 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:12:23.270 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:12:23.270 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:12:23.270 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:12:23.280 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:12:23.280 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:12:23.280 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:12:23.280 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:12:23.290 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:12:23.290 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:12:23.290 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:12:23.290 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:12:23.290 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37016 150\n [Camera]
17-03-18 01:12:23.490 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:12:23.880 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:12:23.880 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:12:23.880 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:23.880 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:23.880 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:12:23.880 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:12:23.880 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:12:23.890 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:23.890 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:23.890 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:12:24.070 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37016 775
17-03-18 01:12:24.220 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:12:24.260 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 01:12:24.260 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 01:12:24.260 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:24.270 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:24.270 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 01:12:24.270 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:12:24.270 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:24.270 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:24.270 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:12:24.270 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:12:24.410 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:12:24.410 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:12:24.410 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:24.520 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:12:24.520 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:12:24.520 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:24.530 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:24.530 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:12:24.530 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:24.530 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:12:24.600 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:12:24.600 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:12:24.600 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37016 150' command took 5 ms to send, 1299 ms to get response, and 1313 ms overall
17-03-18 01:12:24.610 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:12:24.610 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.168652699953603. ------
17-03-18 01:12:24.610 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:24.610 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17540 mm
17-03-18 01:12:24.610 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:12:24.610 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:12:24.610 -07 000000462 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 01:12:24.610 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 38316, sync = True, waitForSettling = False)
17-03-18 01:12:24.610 -07 000000437 INF: Z Motor: Moving to -0.175399 mm, started at -0.168653 mm, distance = -6.75 um
17-03-18 01:12:24.610 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:24.620 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:12:24.620 -07 000000437 INF: FPGA: Xmit ZDACW 38316\n [Z Motor]
17-03-18 01:12:24.620 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 01:12:24.630 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:24.630 -07 000000437 INF: FPGA: 'ZDACW 38316' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:12:24.630 -07 000000480 INF: FPGA: Recv YRDPOS 136271
17-03-18 01:12:24.640 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:12:24.640 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:12:24.640 -07 000000462 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:24.640 -07 000000462 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:12:24.640 -07 000000462 INF: Y Motor: Moving 1350 steps-30
17-03-18 01:12:24.650 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:24.650 -07 000000590 INF: FPGA: Recv ZDACR 38316
17-03-18 01:12:24.660 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:12:24.660 -07 000000437 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 01:12:24.660 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:12:24.840 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:12:24.840 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:12:24.930 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:12:24.930 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:12:24.930 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:24.930 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:12:24.930 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:12:24.930 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:24.930 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:12:24.930 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:12:24.930 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 01:12:24.940 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:12:25.030 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 01:12:25.030 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 01:12:25.070 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:25.080 -07 000000447 INF: FPGA: Recv YRDPOS 137976
17-03-18 01:12:25.090 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:25.090 -07 000000462 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:25.090 -07 000000462 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 01:12:25.090 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.154 mm/sec
17-03-18 01:12:26.040 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:26.040 -07 000000590 INF: FPGA: Recv YRDPOS 137977
17-03-18 01:12:26.050 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:26.050 -07 000000462 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:26.070 -07 000000462 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:12:26.070 -07 000000462 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:12:26.070 -07 000000462 INF: Y Motor: Moved to 67.3716 after 1460 ms (table move)
17-03-18 01:12:26.080 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175399 mm (DAC = 38316)
17-03-18 01:12:26.080 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:26.080 -07 000000447 INF: FPGA: Recv ZSGSRD 36594
17-03-18 01:12:26.090 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:12:26.090 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:26.090 -07 000000579 INF: FPGA: Recv ZSGSRD 36595
17-03-18 01:12:26.100 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:26.100 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:26.100 -07 000000581 INF: FPGA: Recv ZSGSRD 36592
17-03-18 01:12:26.110 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:26.110 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:26.110 -07 000000447 INF: FPGA: Recv ZSGSRD 36594
17-03-18 01:12:26.120 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:26.120 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:26.120 -07 000000579 INF: FPGA: Recv ZSGSRD 36593
17-03-18 01:12:26.130 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:26.130 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:26.130 -07 000000581 INF: FPGA: Recv ZSGSRD 36596
17-03-18 01:12:26.140 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:26.140 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:26.140 -07 000000447 INF: FPGA: Recv ZSGSRD 36587
17-03-18 01:12:26.150 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:26.150 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:26.150 -07 000000579 INF: FPGA: Recv ZSGSRD 36592
17-03-18 01:12:26.160 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:26.160 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:26.160 -07 000000592 INF: FPGA: Recv ZSGSRD 36593
17-03-18 01:12:26.170 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:26.170 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:26.170 -07 000000581 INF: FPGA: Recv ZSGSRD 36601
17-03-18 01:12:26.180 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:26.180 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:26.180 -07 000000447 INF: FPGA: Recv ZPIEZORD 32594
17-03-18 01:12:26.190 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:26.190 -07 000000455 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.847 V. Piezo Error = -8.8 V.
17-03-18 01:12:26.190 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36594 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36594 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36587 (-174.5 uncal um), Max = 36601 (-174.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:12:26.190 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36594, posNoise = 7, negNoise = 7
17-03-18 01:12:26.190 -07 000000455 INF: Z Motor: After move to -0.175399, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:26.190 -07 000000455 INF: Z Motor: Settle wait time = 1464 ms, measure time = 109 ms (allowed 150 ms), total time = 1573 ms
17-03-18 01:12:26.190 -07 000000455 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:12:26.240 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 01:12:26.240 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:12:26.240 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:26.240 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:26.240 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:12:26.240 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:26.240 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:26.240 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:26.240 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:12:26.240 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:26.250 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:12:26.250 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:12:26.250 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:12:26.250 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:12:26.260 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:12:26.300 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:12:26.600 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:12:26.600 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:12:26.600 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:12:26.600 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 01:12:26.640 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:12:26.640 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 01:12:26.640 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:12:26.720 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:12:26.720 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:26.720 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:12:26.720 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:12:26.740 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:26.740 -07 000000576 INF: Autofocus start
17-03-18 01:12:26.740 -07 000000576 INF: MeasureProfile start
17-03-18 01:12:26.740 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:26.750 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:12:26.750 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:12:26.750 -07 000000576 INF: MeasureProfile done
17-03-18 01:12:26.750 -07 000000576 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:12:26.750 -07 000000576 INF: Autofocus finished
17-03-18 01:12:26.950 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:12:26.950 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 01:12:26.960 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175410971126735. ----------
17-03-18 01:12:26.960 -07 000000610 INF: Cycle	84	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:12:26.960 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36831, sync = True, waitForSettling = True)
17-03-18 01:12:26.960 -07 000000610 INF: Z Motor: Moving to -0.168602 mm, started at -0.175411 mm, distance = 6.81 um
17-03-18 01:12:26.960 -07 000000610 INF: FPGA: Xmit ZDACW 36831\n [Z Motor]
17-03-18 01:12:26.970 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:12:26.970 -07 000000610 INF: FPGA: 'ZDACW 36831' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:12:26.970 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:26.970 -07 000000592 INF: FPGA: Recv ZDACR 36831
17-03-18 01:12:26.980 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:12:26.980 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:12:27.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:27.130 -07 000000592 INF: FPGA: Recv ZSGSRD 35537
17-03-18 01:12:27.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:27.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:27.140 -07 000000592 INF: FPGA: Recv ZSGSRD 35537
17-03-18 01:12:27.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:27.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:27.150 -07 000000430 INF: FPGA: Recv ZSGSRD 35537
17-03-18 01:12:27.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:27.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:27.160 -07 000000576 INF: FPGA: Recv ZSGSRD 35539
17-03-18 01:12:27.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:27.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:27.170 -07 000000444 INF: FPGA: Recv ZSGSRD 35530
17-03-18 01:12:27.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:27.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:27.180 -07 000000444 INF: FPGA: Recv ZSGSRD 35536
17-03-18 01:12:27.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:27.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:27.190 -07 000000430 INF: FPGA: Recv ZSGSRD 35537
17-03-18 01:12:27.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:27.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:27.200 -07 000000576 INF: FPGA: Recv ZSGSRD 35534
17-03-18 01:12:27.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:27.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:27.210 -07 000000592 INF: FPGA: Recv ZSGSRD 35539
17-03-18 01:12:27.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:27.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:27.220 -07 000000444 INF: FPGA: Recv ZSGSRD 35537
17-03-18 01:12:27.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:27.230 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:27.230 -07 000000576 INF: FPGA: Recv ZPIEZORD 31161
17-03-18 01:12:27.240 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:27.240 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.620 V. Piezo Error = -9.6 V.
17-03-18 01:12:27.240 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35536 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35537 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35530 (-167.7 uncal um), Max = 35539 (-167.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:12:27.240 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35536, posNoise = 3, negNoise = 6
17-03-18 01:12:27.240 -07 000000610 INF: Z Motor: After move to -0.168602, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:27.240 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 01:12:27.240 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:12:27.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:12:27.240 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:27.240 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:27.240 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:27.240 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:27.240 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:12:27.240 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:12:27.240 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:27.240 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:12:27.240 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:27.240 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:12:27.240 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:12:27.240 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:12:27.250 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:12:27.250 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:12:27.250 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:12:27.250 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:12:27.260 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:12:27.260 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:12:27.260 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:12:27.260 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:12:27.270 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37007 150\n [Camera]
17-03-18 01:12:27.470 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:12:27.860 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:12:27.860 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:12:27.860 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:27.860 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:12:27.860 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:12:27.860 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:27.860 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:27.860 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:12:27.860 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:27.860 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) start.
17-03-18 01:12:28.020 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.978563,
17-03-18 01:12:28.050 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37007 775
17-03-18 01:12:28.200 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:12:28.250 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 01:12:28.250 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:12:28.250 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:28.250 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:28.250 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 01:12:28.250 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:12:28.250 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:28.260 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:28.260 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:12:28.260 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:12:28.390 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:12:28.390 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:12:28.390 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:28.490 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:12:28.500 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:12:28.500 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:28.500 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:28.500 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:12:28.500 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:28.500 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:12:28.580 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:12:28.580 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:12:28.580 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37007 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-18 01:12:28.580 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:12:28.580 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.168614154680752. ------
17-03-18 01:12:28.580 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:28.580 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17505 mm
17-03-18 01:12:28.580 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:12:28.590 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:28.590 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:12:28.590 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38241, sync = True, waitForSettling = False)
17-03-18 01:12:28.590 -07 000000461 INF: Z Motor: Moving to -0.175056 mm, started at -0.168614 mm, distance = -6.44 um
17-03-18 01:12:28.590 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:12:28.590 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:12:28.590 -07 000000444 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 01:12:28.600 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:28.600 -07 000000592 INF: FPGA: Recv YRDPOS 137977
17-03-18 01:12:28.610 -07 000000461 INF: FPGA: Xmit ZDACW 38241\n [Z Motor]
17-03-18 01:12:28.610 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:12:28.610 -07 000000444 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:28.610 -07 000000444 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:12:28.610 -07 000000444 INF: Y Motor: Moving 1346 steps-24
17-03-18 01:12:28.610 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:12:28.620 -07 000000461 INF: FPGA: 'ZDACW 38241' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 01:12:28.620 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:12:28.630 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:28.630 -07 000000480 INF: FPGA: Recv ZDACR 38241
17-03-18 01:12:28.640 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:12:28.640 -07 000000461 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 01:12:28.790 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:12:28.790 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 01:12:28.900 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:12:28.900 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:12:28.900 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:28.900 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:12:28.900 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:12:28.900 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:28.910 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:12:28.910 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:12:28.910 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 01:12:28.910 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:12:29.000 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:12:29.000 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 388 ms overall
17-03-18 01:12:29.040 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:29.040 -07 000000592 INF: FPGA: Recv YRDPOS 139682
17-03-18 01:12:29.050 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:12:29.050 -07 000000444 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:29.050 -07 000000444 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 01:12:29.050 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.841 mm, average velocity = 2.162 mm/sec
17-03-18 01:12:30.000 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:30.000 -07 000000437 INF: FPGA: Recv YRDPOS 139683
17-03-18 01:12:30.010 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:30.010 -07 000000444 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:30.030 -07 000000444 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:12:30.030 -07 000000444 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:12:30.030 -07 000000444 INF: Y Motor: Moved to 68.2046 after 1442 ms (table move)
17-03-18 01:12:30.030 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175056 mm (DAC = 38241)
17-03-18 01:12:30.030 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:30.040 -07 000000592 INF: FPGA: Recv ZSGSRD 36538
17-03-18 01:12:30.040 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:12:30.040 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:30.040 -07 000000590 INF: FPGA: Recv ZSGSRD 36542
17-03-18 01:12:30.050 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:12:30.050 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:30.050 -07 000000444 INF: FPGA: Recv ZSGSRD 36538
17-03-18 01:12:30.060 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:30.060 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:30.060 -07 000000592 INF: FPGA: Recv ZSGSRD 36539
17-03-18 01:12:30.070 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:30.070 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:30.070 -07 000000444 INF: FPGA: Recv ZSGSRD 36534
17-03-18 01:12:30.080 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:30.080 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:30.080 -07 000000590 INF: FPGA: Recv ZSGSRD 36538
17-03-18 01:12:30.090 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:30.090 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:30.090 -07 000000462 INF: FPGA: Recv ZSGSRD 36543
17-03-18 01:12:30.100 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:30.100 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:30.100 -07 000000591 INF: FPGA: Recv ZSGSRD 36541
17-03-18 01:12:30.110 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:30.110 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:30.110 -07 000000592 INF: FPGA: Recv ZSGSRD 36541
17-03-18 01:12:30.120 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:30.120 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:30.120 -07 000000462 INF: FPGA: Recv ZSGSRD 36540
17-03-18 01:12:30.130 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:30.130 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:30.130 -07 000000591 INF: FPGA: Recv ZPIEZORD 32526
17-03-18 01:12:30.140 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:30.140 -07 000000576 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.835 V. Piezo Error = -8.9 V.
17-03-18 01:12:30.140 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36539 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36540 (-174.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36534 (-174.1 uncal um), Max = 36543 (-174.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:12:30.140 -07 000000576 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36539, posNoise = 4, negNoise = 5
17-03-18 01:12:30.140 -07 000000576 INF: Z Motor: After move to -0.175056, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:30.140 -07 000000576 INF: Z Motor: Settle wait time = 1446 ms, measure time = 101 ms (allowed 150 ms), total time = 1547 ms
17-03-18 01:12:30.140 -07 000000576 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:12:30.190 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 01:12:30.190 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:12:30.190 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:30.190 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:30.190 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:30.190 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:30.190 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:12:30.190 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:30.190 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:12:30.190 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:12:30.200 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:12:30.200 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:12:30.210 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:12:30.210 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:12:30.210 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:12:30.260 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:12:30.560 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:12:30.560 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:12:30.560 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:12:30.560 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 01:12:30.600 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:12:30.600 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:12:30.600 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:12:30.670 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:12:30.670 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:30.670 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:12:30.670 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:12:30.700 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:30.700 -07 000000462 INF: Autofocus start
17-03-18 01:12:30.700 -07 000000462 INF: MeasureProfile start
17-03-18 01:12:30.700 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:30.710 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:12:30.710 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:12:30.720 -07 000000462 INF: MeasureProfile done
17-03-18 01:12:30.720 -07 000000462 INF: X=-48  Z correction [um]=-0.3191189
17-03-18 01:12:30.720 -07 000000462 INF: Autofocus finished
17-03-18 01:12:30.910 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:12:30.910 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:12:30.910 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175057639458939. ----------
17-03-18 01:12:30.910 -07 000000610 INF: Cycle	84	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:12:30.920 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36684, sync = True, waitForSettling = True)
17-03-18 01:12:30.920 -07 000000610 INF: Z Motor: Moving to -0.167929 mm, started at -0.175058 mm, distance = 7.13 um
17-03-18 01:12:30.920 -07 000000610 INF: FPGA: Xmit ZDACW 36684\n [Z Motor]
17-03-18 01:12:30.920 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:12:30.930 -07 000000610 INF: FPGA: 'ZDACW 36684' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:12:30.930 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:30.930 -07 000000592 INF: FPGA: Recv ZDACR 36684
17-03-18 01:12:30.940 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:30.940 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:12:31.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:31.090 -07 000000462 INF: FPGA: Recv ZSGSRD 35436
17-03-18 01:12:31.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:31.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:31.100 -07 000000462 INF: FPGA: Recv ZSGSRD 35438
17-03-18 01:12:31.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:31.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:31.110 -07 000000592 INF: FPGA: Recv ZSGSRD 35431
17-03-18 01:12:31.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:31.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:31.120 -07 000000592 INF: FPGA: Recv ZSGSRD 35428
17-03-18 01:12:31.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:31.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:31.130 -07 000000591 INF: FPGA: Recv ZSGSRD 35430
17-03-18 01:12:31.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:31.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:31.140 -07 000000592 INF: FPGA: Recv ZSGSRD 35429
17-03-18 01:12:31.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:31.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:31.150 -07 000000592 INF: FPGA: Recv ZSGSRD 35433
17-03-18 01:12:31.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:31.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:31.160 -07 000000592 INF: FPGA: Recv ZSGSRD 35429
17-03-18 01:12:31.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:31.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:31.170 -07 000000592 INF: FPGA: Recv ZSGSRD 35430
17-03-18 01:12:31.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:31.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:31.180 -07 000000592 INF: FPGA: Recv ZSGSRD 35435
17-03-18 01:12:31.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:31.190 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:31.190 -07 000000592 INF: FPGA: Recv ZPIEZORD 31060
17-03-18 01:12:31.200 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:31.200 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.598 V. Piezo Error = -9.6 V.
17-03-18 01:12:31.200 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35432 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35430 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35428 (-167.1 uncal um), Max = 35438 (-167.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:12:31.200 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35432, posNoise = 6, negNoise = 4
17-03-18 01:12:31.200 -07 000000610 INF: Z Motor: After move to -0.167929, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:31.200 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:12:31.200 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:31.200 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:31.200 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:31.200 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:31.200 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:12:31.200 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:31.200 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:12:31.200 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:12:31.210 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:31.210 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:12:31.210 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:12:31.210 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:12:31.210 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:12:31.210 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:12:31.210 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:12:31.210 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:12:31.220 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:12:31.220 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:12:31.220 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:12:31.220 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:12:31.220 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36860 150\n [Camera]
17-03-18 01:12:31.420 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:12:31.810 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:12:31.810 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:12:31.810 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:31.820 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:12:31.820 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:12:31.820 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:31.820 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:31.820 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:12:31.820 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:31.820 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2590502728, 0x0, 391868352) start.
17-03-18 01:12:32.010 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36860 775
17-03-18 01:12:32.160 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:12:32.210 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2590502728, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:12:32.210 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:12:32.210 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:32.220 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:12:32.220 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:12:32.220 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:32.220 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:32.220 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:12:32.330 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:12:32.330 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:12:32.330 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 110 ms.
17-03-18 01:12:32.330 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 01:12:32.350 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:12:32.350 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:12:32.350 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:32.350 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:12:32.350 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:12:32.350 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:32.350 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:32.350 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:12:32.360 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:32.360 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:12:32.540 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:12:32.540 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:12:32.540 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36860 150' command took 2 ms to send, 1312 ms to get response, and 1316 ms overall
17-03-18 01:12:32.540 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:12:32.540 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.167946036618009. ------
17-03-18 01:12:32.540 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:32.540 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17447 mm
17-03-18 01:12:32.540 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:12:32.550 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:12:32.550 -07 000000444 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 01:12:32.550 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:32.550 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-18 01:12:32.550 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:32.550 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 38113, sync = True, waitForSettling = False)
17-03-18 01:12:32.550 -07 000000437 INF: Z Motor: Moving to -0.174470 mm, started at -0.167946 mm, distance = -6.52 um
17-03-18 01:12:32.560 -07 000000437 INF: FPGA: Xmit ZDACW 38113\n [Z Motor]
17-03-18 01:12:32.560 -07 000000480 INF: FPGA: Recv YRDPOS 139683
17-03-18 01:12:32.560 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 9 ms overall
17-03-18 01:12:32.560 -07 000000444 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:32.560 -07 000000444 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:12:32.560 -07 000000444 INF: Y Motor: Moving 1341 steps-17
17-03-18 01:12:32.560 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:12:32.570 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:12:32.570 -07 000000437 INF: FPGA: 'ZDACW 38113' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:12:32.580 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:12:32.590 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:32.590 -07 000000581 INF: FPGA: Recv ZDACR 38113
17-03-18 01:12:32.600 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:12:32.600 -07 000000437 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 01:12:32.750 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:12:32.750 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:12:32.750 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:32.750 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:12:32.750 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:12:32.750 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:32.750 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:12:32.750 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:32.750 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:12:32.760 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:12:32.770 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:12:32.770 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-18 01:12:32.960 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:12:32.960 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-18 01:12:33.000 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:33.000 -07 000000437 INF: FPGA: Recv YRDPOS 141366
17-03-18 01:12:33.010 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:12:33.010 -07 000000444 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:33.010 -07 000000444 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 01:12:33.010 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-18 01:12:33.380 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.02213,
17-03-18 01:12:33.960 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:33.960 -07 000000430 INF: FPGA: Recv YRDPOS 141366
17-03-18 01:12:33.970 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:33.970 -07 000000444 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:33.990 -07 000000444 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:12:33.990 -07 000000444 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:12:33.990 -07 000000444 INF: Y Motor: Moved to 69.0264 after 1445 ms (table move)
17-03-18 01:12:34.000 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174470 mm (DAC = 38113)
17-03-18 01:12:34.000 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:34.000 -07 000000461 INF: FPGA: Recv ZSGSRD 36449
17-03-18 01:12:34.010 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:34.010 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:34.010 -07 000000461 INF: FPGA: Recv ZSGSRD 36452
17-03-18 01:12:34.020 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:34.020 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:34.020 -07 000000461 INF: FPGA: Recv ZSGSRD 36451
17-03-18 01:12:34.030 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:34.030 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:34.030 -07 000000461 INF: FPGA: Recv ZSGSRD 36443
17-03-18 01:12:34.040 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:34.040 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:34.040 -07 000000461 INF: FPGA: Recv ZSGSRD 36454
17-03-18 01:12:34.050 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:34.050 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:34.050 -07 000000461 INF: FPGA: Recv ZSGSRD 36444
17-03-18 01:12:34.060 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:34.060 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:34.060 -07 000000461 INF: FPGA: Recv ZSGSRD 36449
17-03-18 01:12:34.070 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:34.070 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:34.070 -07 000000461 INF: FPGA: Recv ZSGSRD 36442
17-03-18 01:12:34.080 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:34.080 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:34.080 -07 000000461 INF: FPGA: Recv ZSGSRD 36448
17-03-18 01:12:34.090 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:34.090 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:34.090 -07 000000461 INF: FPGA: Recv ZSGSRD 36457
17-03-18 01:12:34.100 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:34.100 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:34.720 -07 000000455 INF: FPGA: Recv ZPIEZORD 32413
17-03-18 01:12:34.720 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 610 ms to get response, and 620 ms overall
17-03-18 01:12:34.720 -07 000000576 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.816 V. Piezo Error = -8.9 V.
17-03-18 01:12:34.720 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36449 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36449 (-173.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36442 (-173.5 uncal um), Max = 36457 (-173.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:12:34.720 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36449, posNoise = 8, negNoise = 7
17-03-18 01:12:34.720 -07 000000576 INF: Z Motor: After move to -0.174470, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:34.720 -07 000000576 INF: Z Motor: Settle wait time = 1444 ms, measure time = 721 ms (allowed 150 ms), total time = 2165 ms
17-03-18 01:12:34.720 -07 000000576 INF: Z Motor: Warning: Actual position measuring time = 721 ms, longer than max expected time of 150 ms
17-03-18 01:12:34.720 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2172 ms
17-03-18 01:12:34.720 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:12:34.720 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:34.720 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:34.720 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:34.720 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:34.730 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:12:34.730 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:34.730 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:34.730 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:12:34.730 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:12:34.730 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:12:34.740 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:12:34.740 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:12:34.740 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:12:34.790 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:12:35.090 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:12:35.090 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:12:35.090 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:12:35.090 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 01:12:35.120 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:12:35.130 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:12:35.130 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 380 ms to get response, and 386 ms overall
17-03-18 01:12:35.210 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 01:12:35.210 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:35.210 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:12:35.210 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 01:12:35.230 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:35.230 -07 000000455 INF: Autofocus start
17-03-18 01:12:35.230 -07 000000455 INF: MeasureProfile start
17-03-18 01:12:35.240 -07 000000455 INF: MeasureProfile done
17-03-18 01:12:35.240 -07 000000455 INF: X=80  Z correction [um]=0.337546
17-03-18 01:12:35.240 -07 000000455 INF: Autofocus finished
17-03-18 01:12:35.240 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:35.240 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 7 ms to get response, and 14 ms overall
17-03-18 01:12:35.240 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:12:35.450 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:12:35.450 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 202 ms to get response, and 202 ms overall
17-03-18 01:12:35.450 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.17447946036618. ----------
17-03-18 01:12:35.450 -07 000000610 INF: Cycle	84	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:12:35.450 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36699, sync = True, waitForSettling = True)
17-03-18 01:12:35.450 -07 000000610 INF: Z Motor: Moving to -0.167997 mm, started at -0.174479 mm, distance = 6.48 um
17-03-18 01:12:35.450 -07 000000610 INF: FPGA: Xmit ZDACW 36699\n [Z Motor]
17-03-18 01:12:35.460 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:12:35.460 -07 000000610 INF: FPGA: 'ZDACW 36699' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:12:35.460 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:35.460 -07 000000455 INF: FPGA: Recv ZDACR 36699
17-03-18 01:12:35.470 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:12:35.470 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:12:35.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:35.620 -07 000000590 INF: FPGA: Recv ZSGSRD 35442
17-03-18 01:12:35.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:35.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:35.630 -07 000000455 INF: FPGA: Recv ZSGSRD 35439
17-03-18 01:12:35.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:35.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:35.640 -07 000000462 INF: FPGA: Recv ZSGSRD 35439
17-03-18 01:12:35.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:35.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:35.650 -07 000000455 INF: FPGA: Recv ZSGSRD 35442
17-03-18 01:12:35.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:35.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:35.660 -07 000000455 INF: FPGA: Recv ZSGSRD 35445
17-03-18 01:12:35.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:35.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:35.670 -07 000000576 INF: FPGA: Recv ZSGSRD 35439
17-03-18 01:12:35.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:35.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:35.680 -07 000000590 INF: FPGA: Recv ZSGSRD 35440
17-03-18 01:12:35.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:35.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:35.690 -07 000000462 INF: FPGA: Recv ZSGSRD 35443
17-03-18 01:12:35.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:35.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:35.700 -07 000000462 INF: FPGA: Recv ZSGSRD 35447
17-03-18 01:12:35.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:35.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:35.710 -07 000000576 INF: FPGA: Recv ZSGSRD 35438
17-03-18 01:12:35.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:35.720 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:35.720 -07 000000462 INF: FPGA: Recv ZPIEZORD 31066
17-03-18 01:12:35.730 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:35.730 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.6 V.
17-03-18 01:12:35.730 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35441 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35441 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35438 (-167.1 uncal um), Max = 35447 (-167.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:12:35.730 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35441, posNoise = 6, negNoise = 3
17-03-18 01:12:35.730 -07 000000610 INF: Z Motor: After move to -0.167997, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:35.730 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 01:12:35.730 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:35.730 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:35.730 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:35.730 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:12:35.730 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:35.730 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:12:35.730 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:12:35.730 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:35.730 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:12:35.730 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:12:35.730 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:35.730 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:12:35.730 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:12:35.730 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:12:35.740 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:12:35.740 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:12:35.750 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:12:35.750 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:12:35.750 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:12:35.750 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:12:35.760 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36876 150\n [Camera]
17-03-18 01:12:35.960 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:12:36.350 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:12:36.350 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:12:36.350 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:36.350 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:12:36.350 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:12:36.350 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:36.350 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:36.350 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:12:36.350 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:36.350 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2590502728, 0x0, 391868352) start.
17-03-18 01:12:36.540 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36876 775
17-03-18 01:12:36.690 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:12:36.750 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2590502728, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:12:36.750 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:12:36.750 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:36.750 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:12:36.750 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:12:36.750 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:36.750 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:36.750 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:12:36.750 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:36.760 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:12:36.880 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:12:36.880 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:12:36.880 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:36.880 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:12:36.880 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:12:36.880 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:36.880 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:12:36.880 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:36.880 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:36.880 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:12:37.070 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:12:37.070 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:12:37.070 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36876 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:12:37.070 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:12:37.070 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.168003854527285. ------
17-03-18 01:12:37.080 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:37.080 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17442 mm
17-03-18 01:12:37.080 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:12:37.080 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:37.080 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:12:37.080 -07 000000576 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 01:12:37.080 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38101, sync = True, waitForSettling = False)
17-03-18 01:12:37.080 -07 000000579 INF: Z Motor: Moving to -0.174415 mm, started at -0.168004 mm, distance = -6.41 um
17-03-18 01:12:37.090 -07 000000579 INF: FPGA: Xmit ZDACW 38101\n [Z Motor]
17-03-18 01:12:37.090 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:37.090 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:12:37.100 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:37.100 -07 000000579 INF: FPGA: 'ZDACW 38101' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:12:37.100 -07 000000591 INF: FPGA: Recv YRDPOS 141367
17-03-18 01:12:37.110 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:12:37.110 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:12:37.110 -07 000000576 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:37.110 -07 000000576 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:12:37.110 -07 000000576 INF: Y Motor: Moving 1353 steps-33
17-03-18 01:12:37.120 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:37.120 -07 000000591 INF: FPGA: Recv ZDACR 38101
17-03-18 01:12:37.130 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:12:37.130 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:12:37.130 -07 000000579 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 01:12:37.240 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:12:37.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:12:37.280 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:12:37.280 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:12:37.280 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:37.280 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:12:37.280 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:12:37.280 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:37.290 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:12:37.290 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:12:37.290 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:12:37.290 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:12:38.220 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:12:38.220 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 01:12:38.220 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1080 ms to get response, and 1106 ms overall
17-03-18 01:12:38.220 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1100 ms to get response, and 1129 ms overall
17-03-18 01:12:38.260 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:38.260 -07 000000590 INF: FPGA: Recv YRDPOS 143079
17-03-18 01:12:38.270 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:12:38.270 -07 000000576 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:38.270 -07 000000576 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:12:38.270 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1107 ms, distance = 0.846 mm, average velocity = 0.764 mm/sec
17-03-18 01:12:39.220 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:39.720 -07 000000447 INF: FPGA: Recv YRDPOS 143079
17-03-18 01:12:39.720 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 490 ms to get response, and 500 ms overall
17-03-18 01:12:39.720 -07 000000576 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:39.720 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.994908,
17-03-18 01:12:39.750 -07 000000576 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:12:39.750 -07 000000576 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:12:39.750 -07 000000576 INF: Y Motor: Moved to 69.8628 after 2666 ms (table move)
17-03-18 01:12:39.750 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174415 mm (DAC = 38101)
17-03-18 01:12:39.760 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:39.760 -07 000000576 INF: FPGA: Recv ZSGSRD 36436
17-03-18 01:12:39.770 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:12:39.770 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:39.770 -07 000000444 INF: FPGA: Recv ZSGSRD 36443
17-03-18 01:12:39.780 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:39.780 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:39.780 -07 000000576 INF: FPGA: Recv ZSGSRD 36438
17-03-18 01:12:39.790 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:39.790 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:39.790 -07 000000444 INF: FPGA: Recv ZSGSRD 36436
17-03-18 01:12:39.800 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:39.800 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:39.800 -07 000000447 INF: FPGA: Recv ZSGSRD 36443
17-03-18 01:12:39.810 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:39.810 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:39.810 -07 000000444 INF: FPGA: Recv ZSGSRD 36443
17-03-18 01:12:39.820 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:39.820 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:39.820 -07 000000480 INF: FPGA: Recv ZSGSRD 36442
17-03-18 01:12:39.830 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:39.830 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:39.830 -07 000000576 INF: FPGA: Recv ZSGSRD 36440
17-03-18 01:12:39.840 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:39.840 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:39.840 -07 000000480 INF: FPGA: Recv ZSGSRD 36439
17-03-18 01:12:39.850 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:39.850 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:39.850 -07 000000576 INF: FPGA: Recv ZSGSRD 36442
17-03-18 01:12:39.860 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:39.860 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:39.860 -07 000000447 INF: FPGA: Recv ZPIEZORD 32372
17-03-18 01:12:39.870 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:39.870 -07 000000437 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.814 V. Piezo Error = -9.0 V.
17-03-18 01:12:39.870 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36440 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36441 (-173.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36436 (-173.5 uncal um), Max = 36443 (-173.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:12:39.870 -07 000000437 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36440, posNoise = 3, negNoise = 4
17-03-18 01:12:39.870 -07 000000437 INF: Z Motor: After move to -0.174415, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:39.870 -07 000000437 INF: Z Motor: Settle wait time = 2671 ms, measure time = 115 ms (allowed 150 ms), total time = 2786 ms
17-03-18 01:12:39.870 -07 000000437 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 01:12:39.910 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2829 ms
17-03-18 01:12:39.910 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:12:39.910 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:39.910 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:39.910 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:39.910 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:39.910 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:12:39.910 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:39.910 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:39.910 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:12:39.920 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:12:39.920 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:12:39.930 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:12:39.930 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:12:39.930 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:12:39.980 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:12:40.280 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:12:40.280 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:12:40.280 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:12:40.280 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2642931184, 0x0, 559484976) start.
17-03-18 01:12:40.320 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:12:40.320 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 01:12:40.320 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:12:40.410 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2642931184, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:12:40.410 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:40.410 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:12:40.410 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:12:40.420 -07 000000447 INF: Autofocus start
17-03-18 01:12:40.420 -07 000000447 INF: MeasureProfile start
17-03-18 01:12:40.420 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:40.420 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:40.430 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:12:40.430 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:12:40.430 -07 000000447 INF: MeasureProfile done
17-03-18 01:12:40.430 -07 000000447 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:12:40.430 -07 000000447 INF: Autofocus finished
17-03-18 01:12:40.630 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:12:40.630 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:12:40.630 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174421642456904. ----------
17-03-18 01:12:40.630 -07 000000610 INF: Cycle	84	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:12:40.640 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36581, sync = True, waitForSettling = True)
17-03-18 01:12:40.640 -07 000000610 INF: Z Motor: Moving to -0.167457 mm, started at -0.174422 mm, distance = 6.96 um
17-03-18 01:12:40.640 -07 000000610 INF: FPGA: Xmit ZDACW 36581\n [Z Motor]
17-03-18 01:12:40.640 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:12:40.650 -07 000000610 INF: FPGA: 'ZDACW 36581' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:12:40.650 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:40.650 -07 000000430 INF: FPGA: Recv ZDACR 36581
17-03-18 01:12:40.660 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:40.660 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:12:40.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:40.810 -07 000000447 INF: FPGA: Recv ZSGSRD 35356
17-03-18 01:12:40.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:40.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:40.820 -07 000000461 INF: FPGA: Recv ZSGSRD 35357
17-03-18 01:12:40.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:40.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:40.830 -07 000000444 INF: FPGA: Recv ZSGSRD 35361
17-03-18 01:12:40.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:40.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:40.840 -07 000000447 INF: FPGA: Recv ZSGSRD 35358
17-03-18 01:12:40.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:40.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:40.850 -07 000000444 INF: FPGA: Recv ZSGSRD 35360
17-03-18 01:12:40.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:40.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:40.860 -07 000000461 INF: FPGA: Recv ZSGSRD 35350
17-03-18 01:12:40.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:40.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:40.870 -07 000000444 INF: FPGA: Recv ZSGSRD 35361
17-03-18 01:12:40.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:40.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:40.880 -07 000000447 INF: FPGA: Recv ZSGSRD 35363
17-03-18 01:12:40.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:40.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:40.890 -07 000000579 INF: FPGA: Recv ZSGSRD 35349
17-03-18 01:12:40.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:40.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:40.900 -07 000000444 INF: FPGA: Recv ZSGSRD 35358
17-03-18 01:12:40.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:40.910 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:40.910 -07 000000592 INF: FPGA: Recv ZPIEZORD 30944
17-03-18 01:12:40.920 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:40.920 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.582 V. Piezo Error = -9.7 V.
17-03-18 01:12:40.920 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35357 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35358 (-166.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35349 (-166.5 uncal um), Max = 35363 (-166.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:12:40.920 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35357, posNoise = 6, negNoise = 8
17-03-18 01:12:40.920 -07 000000610 INF: Z Motor: After move to -0.167457, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:40.920 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:12:40.920 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:40.920 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:40.920 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:40.920 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:40.920 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:12:40.920 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:12:40.920 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:12:40.920 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:40.920 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:12:40.920 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:12:40.920 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:40.920 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:12:40.930 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:12:40.930 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:12:40.930 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:12:40.930 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:12:40.940 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:12:40.940 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:12:40.940 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:12:40.940 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:12:40.950 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36758 150\n [Camera]
17-03-18 01:12:41.150 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:12:41.540 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:12:41.540 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:12:41.540 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:41.540 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:41.540 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:12:41.540 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:12:41.540 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:12:41.540 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:41.660 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:41.660 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:12:41.730 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36758 775
17-03-18 01:12:41.880 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:12:41.930 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 01:12:41.930 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:12:41.930 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:41.930 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:12:41.930 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:12:42.030 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 01:12:42.030 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 01:12:42.030 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:42.040 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:12:42.040 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-18 01:12:42.070 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:12:42.070 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:12:42.070 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:42.070 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:42.070 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:12:42.480 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:12:42.480 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:12:42.480 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:42.480 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:12:42.480 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:12:42.490 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:12:42.490 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:12:42.490 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:12:42.490 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:12:42.490 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36758 150' command took 2 ms to send, 1534 ms to get response, and 1543 ms overall
17-03-18 01:12:42.490 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:12:42.490 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:12:42.490 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:42.490 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:42.490 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2567016040, 0x0, 418435064) start.
17-03-18 01:12:42.590 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:12:42.590 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167464220707377. ------
17-03-18 01:12:42.900 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2567016040, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:12:42.900 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:12:42.900 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:42.900 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:12:42.900 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:12:42.910 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:43.720 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17354 mm
17-03-18 01:12:43.720 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:12:44.720 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:44.720 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1800 ms to get response, and 1801 ms overall
17-03-18 01:12:44.720 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:12:44.720 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:12:44.720 -07 000000455 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 01:12:44.730 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:45.720 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 37911, sync = True, waitForSettling = False)
17-03-18 01:12:45.720 -07 000000581 INF: Z Motor: Moving to -0.173545 mm, started at -0.167464 mm, distance = -6.08 um
17-03-18 01:12:45.720 -07 000000581 INF: FPGA: Xmit ZDACW 37911\n [Z Motor]
17-03-18 01:12:46.720 -07 000000590 INF: FPGA: Recv YRDPOS 143079
17-03-18 01:12:46.720 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:12:46.720 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:12:46.720 -07 000000581 INF: FPGA: 'ZDACW 37911' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 01:12:46.720 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1990 ms to get response, and 1999 ms overall
17-03-18 01:12:46.720 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1980 ms to get response, and 1998 ms overall
17-03-18 01:12:46.720 -07 000000455 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:46.720 -07 000000455 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:12:46.720 -07 000000455 INF: Y Motor: Moving 1344 steps-20
17-03-18 01:12:46.730 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:12:46.740 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:47.720 -07 000000576 INF: FPGA: Recv ZDACR 37911
17-03-18 01:12:47.720 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 01:12:47.720 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:12:47.720 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 970 ms to get response, and 999 ms overall
17-03-18 01:12:47.720 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 980 ms to get response, and 995 ms overall
17-03-18 01:12:47.720 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:12:47.720 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.974486,
17-03-18 01:12:47.720 -07 000000581 INF: Z Motor: MoveAbsStepped took 1999 ms (did NOT wait for settling yet))
17-03-18 01:12:47.780 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:47.780 -07 000000576 INF: FPGA: Recv YRDPOS 144768
17-03-18 01:12:47.790 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:12:47.790 -07 000000455 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:47.790 -07 000000455 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:12:47.790 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 996 ms, distance = 0.840 mm, average velocity = 0.843 mm/sec
17-03-18 01:12:48.740 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:48.740 -07 000000576 INF: FPGA: Recv YRDPOS 144768
17-03-18 01:12:48.750 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:48.750 -07 000000455 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:48.770 -07 000000455 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:12:48.770 -07 000000455 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:12:48.770 -07 000000455 INF: Y Motor: Moved to 70.6875 after 4055 ms (table move)
17-03-18 01:12:48.780 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173545 mm (DAC = 37911)
17-03-18 01:12:48.780 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:48.780 -07 000000480 INF: FPGA: Recv ZSGSRD 36302
17-03-18 01:12:48.790 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:12:48.790 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:48.790 -07 000000592 INF: FPGA: Recv ZSGSRD 36301
17-03-18 01:12:48.800 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:48.800 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:48.800 -07 000000581 INF: FPGA: Recv ZSGSRD 36307
17-03-18 01:12:48.810 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:48.810 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:48.810 -07 000000591 INF: FPGA: Recv ZSGSRD 36297
17-03-18 01:12:48.820 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:48.820 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:48.820 -07 000000581 INF: FPGA: Recv ZSGSRD 36308
17-03-18 01:12:48.830 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:48.830 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:48.830 -07 000000480 INF: FPGA: Recv ZSGSRD 36307
17-03-18 01:12:48.840 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:48.840 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:48.840 -07 000000581 INF: FPGA: Recv ZSGSRD 36307
17-03-18 01:12:48.850 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:48.850 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:48.850 -07 000000591 INF: FPGA: Recv ZSGSRD 36306
17-03-18 01:12:48.860 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:48.860 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:48.860 -07 000000455 INF: FPGA: Recv ZSGSRD 36309
17-03-18 01:12:48.870 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:48.870 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:48.870 -07 000000480 INF: FPGA: Recv ZSGSRD 36313
17-03-18 01:12:48.880 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:48.880 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:48.880 -07 000000581 INF: FPGA: Recv ZPIEZORD 32268
17-03-18 01:12:48.890 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:48.890 -07 000000462 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.785 V. Piezo Error = -8.9 V.
17-03-18 01:12:48.890 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36306 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36307 (-172.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36297 (-172.6 uncal um), Max = 36313 (-172.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:12:48.890 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36306, posNoise = 7, negNoise = 9
17-03-18 01:12:48.890 -07 000000462 INF: Z Motor: After move to -0.173545, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:48.890 -07 000000462 INF: Z Motor: Settle wait time = 3060 ms, measure time = 108 ms (allowed 150 ms), total time = 3168 ms
17-03-18 01:12:48.890 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:12:48.940 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 5218 ms
17-03-18 01:12:48.940 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:12:48.940 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:48.940 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:48.940 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:48.940 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:48.940 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:12:48.940 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:48.940 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:12:48.940 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:12:48.950 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:12:48.950 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:12:48.950 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:12:48.950 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:12:48.960 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:12:49.000 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:12:49.300 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:12:49.300 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:12:49.300 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:12:49.300 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:12:49.340 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:12:49.340 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:12:49.340 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 01:12:49.420 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:12:49.420 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:49.420 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:12:49.420 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:12:49.550 -07 000000447 INF: Autofocus start
17-03-18 01:12:49.550 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:49.550 -07 000000447 INF: MeasureProfile start
17-03-18 01:12:49.560 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:49.560 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:12:49.560 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:12:49.570 -07 000000447 INF: MeasureProfile done
17-03-18 01:12:49.570 -07 000000447 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:12:49.570 -07 000000447 INF: Autofocus finished
17-03-18 01:12:49.760 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:12:49.760 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 204 ms overall
17-03-18 01:12:49.760 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.173560798029908. ----------
17-03-18 01:12:49.770 -07 000000610 INF: Cycle	84	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:12:49.770 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36408, sync = True, waitForSettling = True)
17-03-18 01:12:49.770 -07 000000610 INF: Z Motor: Moving to -0.166665 mm, started at -0.173561 mm, distance = 6.90 um
17-03-18 01:12:49.770 -07 000000610 INF: FPGA: Xmit ZDACW 36408\n [Z Motor]
17-03-18 01:12:49.770 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:12:49.780 -07 000000610 INF: FPGA: 'ZDACW 36408' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:12:49.780 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:49.780 -07 000000480 INF: FPGA: Recv ZDACR 36408
17-03-18 01:12:49.790 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:49.790 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:12:49.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:49.940 -07 000000592 INF: FPGA: Recv ZSGSRD 35231
17-03-18 01:12:49.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:49.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:49.950 -07 000000455 INF: FPGA: Recv ZSGSRD 35229
17-03-18 01:12:49.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:49.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:49.960 -07 000000579 INF: FPGA: Recv ZSGSRD 35229
17-03-18 01:12:49.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:49.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:49.970 -07 000000592 INF: FPGA: Recv ZSGSRD 35236
17-03-18 01:12:49.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:49.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:49.980 -07 000000455 INF: FPGA: Recv ZSGSRD 35237
17-03-18 01:12:49.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:49.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:49.990 -07 000000592 INF: FPGA: Recv ZSGSRD 35234
17-03-18 01:12:50.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:50.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:50.000 -07 000000579 INF: FPGA: Recv ZSGSRD 35242
17-03-18 01:12:50.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:50.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:50.010 -07 000000579 INF: FPGA: Recv ZSGSRD 35233
17-03-18 01:12:50.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:50.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:50.020 -07 000000581 INF: FPGA: Recv ZSGSRD 35231
17-03-18 01:12:50.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:50.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:50.030 -07 000000455 INF: FPGA: Recv ZSGSRD 35235
17-03-18 01:12:50.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:50.040 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:50.040 -07 000000581 INF: FPGA: Recv ZPIEZORD 30835
17-03-18 01:12:50.050 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:50.050 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.7 V.
17-03-18 01:12:50.050 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35234 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35234 (-165.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35229 (-165.8 uncal um), Max = 35242 (-165.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:12:50.050 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35234, posNoise = 8, negNoise = 5
17-03-18 01:12:50.050 -07 000000610 INF: Z Motor: After move to -0.166665, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:50.050 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:12:50.050 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:50.050 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:50.050 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:50.050 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:50.050 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:12:50.050 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:12:50.050 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:12:50.050 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:50.050 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:12:50.050 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:12:50.050 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:50.050 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:12:50.060 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:12:50.060 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:12:50.060 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:12:50.060 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:12:50.070 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:12:50.070 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:12:50.070 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:12:50.070 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:12:50.070 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36585 150\n [Camera]
17-03-18 01:12:50.270 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:12:50.660 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:12:50.660 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:12:50.660 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:50.670 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:12:50.670 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:12:50.670 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:50.670 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:50.670 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) start.
17-03-18 01:12:50.670 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:50.670 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:12:51.040 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 01:12:51.040 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 01:12:51.040 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:51.050 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:51.050 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:12:51.060 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 01:12:51.060 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:12:51.060 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:51.060 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:51.060 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:12:51.070 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36585 775
17-03-18 01:12:51.070 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:12:51.200 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:12:51.200 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:12:51.200 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:51.200 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:12:51.200 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:12:51.200 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:51.200 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:51.200 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) start.
17-03-18 01:12:51.200 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:51.200 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2617114384, 0x0, 418435064) start.
17-03-18 01:12:51.600 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:12:51.600 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:12:51.600 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:51.610 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2617114384, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:12:51.610 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:12:51.610 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:51.610 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:12:51.610 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:12:51.610 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 01:12:51.620 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:12:51.620 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:12:51.620 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:12:51.620 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36585 150' command took 2 ms to send, 1535 ms to get response, and 1546 ms overall
17-03-18 01:12:51.620 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:12:51.620 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.166674042613941. ------
17-03-18 01:12:51.630 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17324 mm
17-03-18 01:12:51.630 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:12:51.630 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:52.430 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:12:52.430 -07 000000444 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 01:12:52.430 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:52.960 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:52.960 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:12:52.960 -07 000000437 INF: FPGA: Recv YRDPOS 144769
17-03-18 01:12:52.960 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 520 ms to get response, and 528 ms overall
17-03-18 01:12:52.960 -07 000000444 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:52.960 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:12:52.960 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1320 ms to get response, and 1328 ms overall
17-03-18 01:12:52.960 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:12:52.960 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 37844, sync = True, waitForSettling = False)
17-03-18 01:12:52.960 -07 000000437 INF: Z Motor: Moving to -0.173239 mm, started at -0.166674 mm, distance = -6.56 um
17-03-18 01:12:52.960 -07 000000444 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:12:52.960 -07 000000444 INF: Y Motor: Moving 1351 steps-31
17-03-18 01:12:52.970 -07 000000437 INF: FPGA: Xmit ZDACW 37844\n [Z Motor]
17-03-18 01:12:52.980 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:12:53.490 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:12:53.490 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:12:53.490 -07 000000437 INF: FPGA: 'ZDACW 37844' command took 0 ms to send, 510 ms to get response, and 528 ms overall
17-03-18 01:12:53.490 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 521 ms to get response, and 529 ms overall
17-03-18 01:12:53.490 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:12:53.490 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 501 ms to get response, and 527 ms overall
17-03-18 01:12:53.490 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:53.490 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.98264,
17-03-18 01:12:53.490 -07 000000461 INF: FPGA: Recv ZDACR 37844
17-03-18 01:12:53.500 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:12:53.500 -07 000000437 INF: Z Motor: MoveAbsStepped took 538 ms (did NOT wait for settling yet))
17-03-18 01:12:53.540 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:53.540 -07 000000579 INF: FPGA: Recv YRDPOS 146469
17-03-18 01:12:53.550 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:53.550 -07 000000444 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:53.550 -07 000000444 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:12:53.550 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 527 ms, distance = 0.845 mm, average velocity = 1.604 mm/sec
17-03-18 01:12:54.500 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:54.500 -07 000000462 INF: FPGA: Recv YRDPOS 146470
17-03-18 01:12:54.510 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:54.510 -07 000000444 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:54.530 -07 000000444 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:12:54.530 -07 000000444 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:12:54.530 -07 000000444 INF: Y Motor: Moved to 71.5186 after 2105 ms (table move)
17-03-18 01:12:54.540 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173239 mm (DAC = 37844)
17-03-18 01:12:54.540 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:54.540 -07 000000590 INF: FPGA: Recv ZSGSRD 36260
17-03-18 01:12:54.550 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:54.550 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:54.550 -07 000000462 INF: FPGA: Recv ZSGSRD 36252
17-03-18 01:12:54.560 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:54.560 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:54.560 -07 000000447 INF: FPGA: Recv ZSGSRD 36252
17-03-18 01:12:54.570 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:54.570 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:54.570 -07 000000430 INF: FPGA: Recv ZSGSRD 36262
17-03-18 01:12:54.580 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:54.580 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:54.580 -07 000000576 INF: FPGA: Recv ZSGSRD 36261
17-03-18 01:12:54.590 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:54.590 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:54.590 -07 000000430 INF: FPGA: Recv ZSGSRD 36258
17-03-18 01:12:54.600 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:54.600 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:54.600 -07 000000576 INF: FPGA: Recv ZSGSRD 36258
17-03-18 01:12:54.610 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:54.610 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:54.610 -07 000000447 INF: FPGA: Recv ZSGSRD 36259
17-03-18 01:12:54.620 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:54.620 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:54.620 -07 000000579 INF: FPGA: Recv ZSGSRD 36256
17-03-18 01:12:54.630 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:54.630 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:54.630 -07 000000590 INF: FPGA: Recv ZSGSRD 36256
17-03-18 01:12:54.640 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:54.640 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:54.640 -07 000000579 INF: FPGA: Recv ZPIEZORD 32196
17-03-18 01:12:54.650 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:54.650 -07 000000591 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.775 V. Piezo Error = -9.0 V.
17-03-18 01:12:54.650 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36257 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36258 (-172.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36252 (-172.3 uncal um), Max = 36262 (-172.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:12:54.650 -07 000000591 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36257, posNoise = 5, negNoise = 5
17-03-18 01:12:54.650 -07 000000591 INF: Z Motor: After move to -0.173239, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:54.650 -07 000000591 INF: Z Motor: Settle wait time = 1578 ms, measure time = 111 ms (allowed 150 ms), total time = 1689 ms
17-03-18 01:12:54.650 -07 000000591 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:12:54.690 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3057 ms
17-03-18 01:12:54.690 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:12:54.690 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:54.690 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:54.690 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:54.690 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:54.690 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:12:54.690 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:54.690 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:54.690 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:12:54.700 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:12:54.700 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:12:54.710 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:12:54.710 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:12:54.710 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:12:54.760 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:12:55.060 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:12:55.060 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:12:55.060 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:12:55.170 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:12:55.170 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:12:55.170 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 441 ms to get response, and 452 ms overall
17-03-18 01:12:55.170 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:12:55.300 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 01:12:55.300 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:55.300 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:12:55.300 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 236 ms.
17-03-18 01:12:55.370 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:55.370 -07 000000579 INF: Autofocus start
17-03-18 01:12:55.370 -07 000000579 INF: MeasureProfile start
17-03-18 01:12:55.370 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:55.380 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:12:55.380 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:12:55.380 -07 000000579 INF: MeasureProfile done
17-03-18 01:12:55.380 -07 000000579 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:12:55.380 -07 000000579 INF: Autofocus finished
17-03-18 01:12:55.580 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:12:55.580 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 01:12:55.580 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173246011634962. ----------
17-03-18 01:12:55.590 -07 000000610 INF: Cycle	84	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:12:55.590 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36341, sync = True, waitForSettling = True)
17-03-18 01:12:55.590 -07 000000610 INF: Z Motor: Moving to -0.166358 mm, started at -0.173246 mm, distance = 6.89 um
17-03-18 01:12:55.590 -07 000000610 INF: FPGA: Xmit ZDACW 36341\n [Z Motor]
17-03-18 01:12:55.590 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:12:55.600 -07 000000610 INF: FPGA: 'ZDACW 36341' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:12:55.600 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:55.600 -07 000000462 INF: FPGA: Recv ZDACR 36341
17-03-18 01:12:55.610 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:55.610 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:12:55.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:55.760 -07 000000590 INF: FPGA: Recv ZSGSRD 35185
17-03-18 01:12:55.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:55.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:55.770 -07 000000579 INF: FPGA: Recv ZSGSRD 35190
17-03-18 01:12:55.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:55.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:55.780 -07 000000576 INF: FPGA: Recv ZSGSRD 35192
17-03-18 01:12:55.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:55.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:55.790 -07 000000462 INF: FPGA: Recv ZSGSRD 35188
17-03-18 01:12:55.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:55.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:55.800 -07 000000576 INF: FPGA: Recv ZSGSRD 35189
17-03-18 01:12:55.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:55.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:55.810 -07 000000462 INF: FPGA: Recv ZSGSRD 35182
17-03-18 01:12:55.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:55.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:55.820 -07 000000444 INF: FPGA: Recv ZSGSRD 35189
17-03-18 01:12:55.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:55.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:55.830 -07 000000462 INF: FPGA: Recv ZSGSRD 35192
17-03-18 01:12:55.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:55.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:55.840 -07 000000430 INF: FPGA: Recv ZSGSRD 35186
17-03-18 01:12:55.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:55.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:55.850 -07 000000462 INF: FPGA: Recv ZSGSRD 35182
17-03-18 01:12:55.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:55.860 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:55.860 -07 000000590 INF: FPGA: Recv ZPIEZORD 30773
17-03-18 01:12:55.870 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:55.870 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.545 V. Piezo Error = -9.7 V.
17-03-18 01:12:55.870 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35188 (-165.5 uncal um), Error = 0.8 uncal um, Median = 35188 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35182 (-165.5 uncal um), Max = 35192 (-165.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:12:55.870 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35188, posNoise = 4, negNoise = 6
17-03-18 01:12:55.870 -07 000000610 INF: Z Motor: After move to -0.166358, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:55.870 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:12:55.870 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:55.870 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:55.870 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:55.870 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:55.870 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:12:55.870 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:12:55.870 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:12:55.870 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:55.870 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:12:55.870 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:12:55.870 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:55.870 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:12:55.880 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:12:55.880 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:12:55.880 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:12:55.880 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:12:55.890 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:12:55.890 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:12:55.890 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:12:55.890 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:12:55.890 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36518 150\n [Camera]
17-03-18 01:12:56.680 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:12:56.680 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:12:56.680 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:12:56.680 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:12:56.680 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36518 775
17-03-18 01:12:56.680 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:12:56.680 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:56.680 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:56.680 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:56.680 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-18 01:12:56.690 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:56.690 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:12:56.830 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:12:57.020 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:12:57.020 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:12:57.020 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:12:57.020 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:12:57.020 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:12:57.020 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:12:57.080 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:12:57.080 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:12:57.080 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:57.080 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:12:57.080 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:12:57.080 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:57.090 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:12:57.090 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:12:57.090 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:12:57.090 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:12:57.090 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) start.
17-03-18 01:12:57.100 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:12:57.100 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:12:57.100 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 01:12:57.210 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:12:57.210 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:12:57.210 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36518 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:12:57.210 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:12:57.210 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.16637852885542. ------
17-03-18 01:12:57.210 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:57.210 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17279 mm
17-03-18 01:12:57.210 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:12:57.220 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:57.220 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 01:12:57.220 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:12:57.220 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 37745, sync = True, waitForSettling = False)
17-03-18 01:12:57.220 -07 000000590 INF: Z Motor: Moving to -0.172786 mm, started at -0.166379 mm, distance = -6.41 um
17-03-18 01:12:57.220 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:12:57.220 -07 000000576 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 01:12:57.230 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:57.230 -07 000000581 INF: FPGA: Recv YRDPOS 146470
17-03-18 01:12:57.240 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:12:57.240 -07 000000576 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:57.240 -07 000000576 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:12:57.240 -07 000000576 INF: Y Motor: Moving 1350 steps-30
17-03-18 01:12:57.240 -07 000000590 INF: FPGA: Xmit ZDACW 37745\n [Z Motor]
17-03-18 01:12:57.240 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:12:57.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:12:57.240 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:12:57.250 -07 000000590 INF: FPGA: 'ZDACW 37745' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:12:57.250 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:57.250 -07 000000581 INF: FPGA: Recv ZDACR 37745
17-03-18 01:12:57.260 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:12:57.260 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:57.260 -07 000000590 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 01:12:57.420 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:12:57.420 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 01:12:57.480 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 01:12:57.480 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:12:57.480 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:57.480 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 01:12:57.480 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:12:57.480 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:57.480 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:12:57.490 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 468 ms.
17-03-18 01:12:57.490 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:12:57.490 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 473 ms.
17-03-18 01:12:57.640 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:12:57.640 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 01:12:57.680 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:57.680 -07 000000455 INF: FPGA: Recv YRDPOS 148171
17-03-18 01:12:57.690 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:12:57.690 -07 000000576 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:57.690 -07 000000576 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:12:57.690 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.844 mm, average velocity = 2.105 mm/sec
17-03-18 01:12:58.640 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:12:58.640 -07 000000581 INF: FPGA: Recv YRDPOS 148171
17-03-18 01:12:58.650 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:58.650 -07 000000576 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:12:58.670 -07 000000576 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:12:58.670 -07 000000576 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:12:58.670 -07 000000576 INF: Y Motor: Moved to 72.3491 after 1454 ms (table move)
17-03-18 01:12:58.680 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172786 mm (DAC = 37745)
17-03-18 01:12:58.680 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:58.680 -07 000000462 INF: FPGA: Recv ZSGSRD 36182
17-03-18 01:12:58.690 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:12:58.690 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:58.690 -07 000000581 INF: FPGA: Recv ZSGSRD 36184
17-03-18 01:12:58.700 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:58.700 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:58.700 -07 000000430 INF: FPGA: Recv ZSGSRD 36191
17-03-18 01:12:58.710 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:58.710 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:58.710 -07 000000576 INF: FPGA: Recv ZSGSRD 36186
17-03-18 01:12:58.720 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:58.720 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:58.720 -07 000000581 INF: FPGA: Recv ZSGSRD 36187
17-03-18 01:12:58.730 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:58.730 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:58.730 -07 000000455 INF: FPGA: Recv ZSGSRD 36193
17-03-18 01:12:58.740 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:58.740 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:58.740 -07 000000430 INF: FPGA: Recv ZSGSRD 36187
17-03-18 01:12:58.750 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:58.750 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:58.750 -07 000000462 INF: FPGA: Recv ZSGSRD 36185
17-03-18 01:12:58.760 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:58.760 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:58.760 -07 000000430 INF: FPGA: Recv ZSGSRD 36187
17-03-18 01:12:58.770 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:58.770 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:58.770 -07 000000591 INF: FPGA: Recv ZSGSRD 36192
17-03-18 01:12:58.780 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:58.780 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:58.780 -07 000000581 INF: FPGA: Recv ZPIEZORD 32110
17-03-18 01:12:58.790 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:58.790 -07 000000579 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.760 V. Piezo Error = -9.0 V.
17-03-18 01:12:58.790 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36187 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36187 (-171.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36182 (-171.9 uncal um), Max = 36193 (-172.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:12:58.790 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36187, posNoise = 6, negNoise = 5
17-03-18 01:12:58.790 -07 000000579 INF: Z Motor: After move to -0.172786, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:58.790 -07 000000579 INF: Z Motor: Settle wait time = 1458 ms, measure time = 108 ms (allowed 150 ms), total time = 1566 ms
17-03-18 01:12:58.790 -07 000000579 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:12:58.840 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 01:12:58.840 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:12:58.840 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:58.840 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:58.840 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:58.840 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:58.840 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:12:58.840 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:58.840 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:58.840 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:12:58.850 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:12:58.850 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:12:58.860 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:12:58.860 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:12:58.860 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.983999,
17-03-18 01:12:58.880 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:12:58.920 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:12:59.220 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:12:59.220 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:12:59.220 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:12:59.220 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2629584144, 0x0, 559484976) start.
17-03-18 01:12:59.260 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:12:59.260 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 01:12:59.260 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 400 ms overall
17-03-18 01:12:59.350 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2629584144, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:12:59.350 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:12:59.350 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:12:59.350 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:12:59.360 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:12:59.360 -07 000000579 INF: Autofocus start
17-03-18 01:12:59.360 -07 000000579 INF: MeasureProfile start
17-03-18 01:12:59.360 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:12:59.370 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:12:59.370 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:12:59.370 -07 000000579 INF: MeasureProfile done
17-03-18 01:12:59.370 -07 000000579 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:12:59.370 -07 000000579 INF: Autofocus finished
17-03-18 01:12:59.570 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:12:59.570 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 01:12:59.570 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.172796316785039. ----------
17-03-18 01:12:59.570 -07 000000610 INF: Cycle	84	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:12:59.580 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36260, sync = True, waitForSettling = True)
17-03-18 01:12:59.580 -07 000000610 INF: Z Motor: Moving to -0.165988 mm, started at -0.172796 mm, distance = 6.81 um
17-03-18 01:12:59.580 -07 000000610 INF: FPGA: Xmit ZDACW 36260\n [Z Motor]
17-03-18 01:12:59.580 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:12:59.590 -07 000000610 INF: FPGA: 'ZDACW 36260' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:12:59.590 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:12:59.590 -07 000000591 INF: FPGA: Recv ZDACR 36260
17-03-18 01:12:59.600 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:59.600 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:12:59.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:59.750 -07 000000462 INF: FPGA: Recv ZSGSRD 35128
17-03-18 01:12:59.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:12:59.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:59.760 -07 000000455 INF: FPGA: Recv ZSGSRD 35127
17-03-18 01:12:59.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:59.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:59.770 -07 000000444 INF: FPGA: Recv ZSGSRD 35133
17-03-18 01:12:59.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:59.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:59.780 -07 000000590 INF: FPGA: Recv ZSGSRD 35130
17-03-18 01:12:59.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:59.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:59.790 -07 000000430 INF: FPGA: Recv ZSGSRD 35131
17-03-18 01:12:59.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:59.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:59.800 -07 000000579 INF: FPGA: Recv ZSGSRD 35129
17-03-18 01:12:59.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:59.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:59.810 -07 000000444 INF: FPGA: Recv ZSGSRD 35126
17-03-18 01:12:59.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:59.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:59.820 -07 000000462 INF: FPGA: Recv ZSGSRD 35131
17-03-18 01:12:59.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:59.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:59.830 -07 000000430 INF: FPGA: Recv ZSGSRD 35130
17-03-18 01:12:59.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:59.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:12:59.840 -07 000000590 INF: FPGA: Recv ZSGSRD 35131
17-03-18 01:12:59.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:59.850 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:12:59.850 -07 000000447 INF: FPGA: Recv ZPIEZORD 30697
17-03-18 01:12:59.860 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:12:59.860 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.533 V. Piezo Error = -9.8 V.
17-03-18 01:12:59.860 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35130 (-165.1 uncal um), Error = 0.8 uncal um, Median = 35130 (-165.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35126 (-165.1 uncal um), Max = 35133 (-165.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:12:59.860 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35130, posNoise = 3, negNoise = 4
17-03-18 01:12:59.860 -07 000000610 INF: Z Motor: After move to -0.165988, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:12:59.860 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:12:59.860 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:12:59.860 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:12:59.860 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:12:59.860 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:12:59.860 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:12:59.860 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:12:59.860 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:12:59.860 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:12:59.860 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:12:59.860 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:12:59.860 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:12:59.860 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:12:59.860 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:12:59.860 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:12:59.870 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:12:59.870 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:12:59.880 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:12:59.880 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:12:59.880 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 01:12:59.880 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:12:59.880 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36437 150\n [Camera]
17-03-18 01:13:00.080 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:13:00.470 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:13:00.470 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:13:00.470 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:00.470 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:00.470 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 01:13:00.480 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:13:00.480 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:13:00.480 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:00.480 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:00.480 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 01:13:00.670 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36437 775
17-03-18 01:13:00.820 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:13:00.870 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:13:00.870 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:13:00.870 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:00.880 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:13:00.880 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:13:00.880 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:00.880 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:00.880 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:13:00.880 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:00.890 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:13:01.000 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:13:01.000 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:13:01.010 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:01.120 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:13:01.120 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:13:01.120 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:01.130 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:01.130 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:01.130 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:13:01.130 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:13:01.200 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:13:01.200 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:13:01.200 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36437 150' command took 2 ms to send, 1301 ms to get response, and 1312 ms overall
17-03-18 01:13:01.200 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:13:01.200 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166005924551197. ------
17-03-18 01:13:01.200 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:01.200 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17265 mm
17-03-18 01:13:01.200 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:13:01.210 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:13:01.210 -07 000000444 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 01:13:01.210 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:01.210 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:13:01.210 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:01.210 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37715, sync = True, waitForSettling = False)
17-03-18 01:13:01.210 -07 000000455 INF: Z Motor: Moving to -0.172648 mm, started at -0.166006 mm, distance = -6.64 um
17-03-18 01:13:01.210 -07 000000591 INF: FPGA: Recv YRDPOS 148171
17-03-18 01:13:01.220 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:13:01.220 -07 000000444 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:01.220 -07 000000444 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:13:01.220 -07 000000444 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:13:01.230 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:13:01.240 -07 000000455 INF: FPGA: Xmit ZDACW 37715\n [Z Motor]
17-03-18 01:13:01.240 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:13:01.250 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:13:01.250 -07 000000455 INF: FPGA: 'ZDACW 37715' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-18 01:13:01.260 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:01.260 -07 000000447 INF: FPGA: Recv ZDACR 37715
17-03-18 01:13:01.270 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:13:01.270 -07 000000455 INF: Z Motor: MoveAbsStepped took 58 ms (did NOT wait for settling yet))
17-03-18 01:13:01.430 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:13:01.430 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 11 ms to send, 194 ms to get response, and 222 ms overall
17-03-18 01:13:01.530 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:13:01.530 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:13:01.530 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:01.530 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:13:01.530 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:13:01.530 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:01.530 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:01.530 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 01:13:01.530 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:01.540 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:13:01.620 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 01:13:01.620 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 01:13:01.670 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:01.670 -07 000000590 INF: FPGA: Recv YRDPOS 149863
17-03-18 01:13:01.680 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:01.680 -07 000000444 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:01.680 -07 000000444 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 01:13:01.680 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.843 mm, average velocity = 2.114 mm/sec
17-03-18 01:13:02.240 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:13:02.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:13:02.630 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:02.630 -07 000000592 INF: FPGA: Recv YRDPOS 149863
17-03-18 01:13:02.640 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:02.640 -07 000000444 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:02.660 -07 000000444 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:13:02.660 -07 000000444 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:13:02.660 -07 000000444 INF: Y Motor: Moved to 73.1753 after 1456 ms (table move)
17-03-18 01:13:02.670 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172648 mm (DAC = 37715)
17-03-18 01:13:02.670 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:02.670 -07 000000437 INF: FPGA: Recv ZSGSRD 36173
17-03-18 01:13:02.680 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:13:02.680 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:02.680 -07 000000430 INF: FPGA: Recv ZSGSRD 36168
17-03-18 01:13:02.690 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:02.690 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:02.690 -07 000000437 INF: FPGA: Recv ZSGSRD 36168
17-03-18 01:13:02.700 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:02.700 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:02.700 -07 000000430 INF: FPGA: Recv ZSGSRD 36170
17-03-18 01:13:02.710 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:02.710 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:02.710 -07 000000592 INF: FPGA: Recv ZSGSRD 36166
17-03-18 01:13:02.720 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:02.720 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:02.720 -07 000000430 INF: FPGA: Recv ZSGSRD 36169
17-03-18 01:13:02.730 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:02.730 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:02.730 -07 000000592 INF: FPGA: Recv ZSGSRD 36164
17-03-18 01:13:02.740 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:02.740 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:02.740 -07 000000581 INF: FPGA: Recv ZSGSRD 36162
17-03-18 01:13:02.750 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:02.750 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:02.750 -07 000000579 INF: FPGA: Recv ZSGSRD 36160
17-03-18 01:13:02.760 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:02.760 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:02.760 -07 000000592 INF: FPGA: Recv ZSGSRD 36163
17-03-18 01:13:02.770 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:02.770 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:02.770 -07 000000581 INF: FPGA: Recv ZPIEZORD 32110
17-03-18 01:13:02.780 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:02.780 -07 000000462 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.755 V. Piezo Error = -9.0 V.
17-03-18 01:13:02.780 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36166 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36167 (-171.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36160 (-171.7 uncal um), Max = 36173 (-171.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:13:02.780 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36166, posNoise = 7, negNoise = 6
17-03-18 01:13:02.780 -07 000000462 INF: Z Motor: After move to -0.172648, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:02.780 -07 000000462 INF: Z Motor: Settle wait time = 1460 ms, measure time = 108 ms (allowed 150 ms), total time = 1568 ms
17-03-18 01:13:02.780 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:13:02.830 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 01:13:02.830 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:13:02.830 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:02.830 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:02.840 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:02.840 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:02.840 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:13:02.840 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:02.840 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:13:02.840 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:13:02.840 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:13:02.840 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:13:02.850 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:13:02.850 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:13:02.850 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:13:02.900 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:13:03.200 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:13:03.200 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:13:03.200 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:13:03.200 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 01:13:03.240 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:13:03.240 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 01:13:03.240 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 386 ms overall
17-03-18 01:13:03.320 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:13:03.320 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:03.320 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:13:03.320 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:13:03.340 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:03.340 -07 000000592 INF: Autofocus start
17-03-18 01:13:03.340 -07 000000592 INF: MeasureProfile start
17-03-18 01:13:03.340 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:03.350 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:13:03.350 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:13:03.360 -07 000000592 INF: MeasureProfile done
17-03-18 01:13:03.360 -07 000000592 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:13:03.360 -07 000000592 INF: Autofocus finished
17-03-18 01:13:03.550 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:13:03.550 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:13:03.550 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.172661408330062. ----------
17-03-18 01:13:03.560 -07 000000610 INF: Cycle	84	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:13:03.560 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36212, sync = True, waitForSettling = True)
17-03-18 01:13:03.560 -07 000000610 INF: Z Motor: Moving to -0.165768 mm, started at -0.172661 mm, distance = 6.89 um
17-03-18 01:13:03.560 -07 000000610 INF: FPGA: Xmit ZDACW 36212\n [Z Motor]
17-03-18 01:13:03.560 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:13:03.570 -07 000000610 INF: FPGA: 'ZDACW 36212' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:13:03.570 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:03.570 -07 000000444 INF: FPGA: Recv ZDACR 36212
17-03-18 01:13:03.580 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:03.580 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:13:03.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:03.730 -07 000000579 INF: FPGA: Recv ZSGSRD 35098
17-03-18 01:13:03.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:03.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:03.740 -07 000000444 INF: FPGA: Recv ZSGSRD 35098
17-03-18 01:13:03.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:03.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:03.750 -07 000000592 INF: FPGA: Recv ZSGSRD 35097
17-03-18 01:13:03.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:03.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:03.760 -07 000000444 INF: FPGA: Recv ZSGSRD 35093
17-03-18 01:13:03.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:03.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:03.770 -07 000000437 INF: FPGA: Recv ZSGSRD 35095
17-03-18 01:13:03.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:03.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:03.780 -07 000000462 INF: FPGA: Recv ZSGSRD 35100
17-03-18 01:13:03.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:03.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:03.790 -07 000000444 INF: FPGA: Recv ZSGSRD 35091
17-03-18 01:13:03.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:03.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:03.800 -07 000000430 INF: FPGA: Recv ZSGSRD 35095
17-03-18 01:13:03.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:03.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:03.810 -07 000000581 INF: FPGA: Recv ZSGSRD 35091
17-03-18 01:13:03.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:03.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:03.820 -07 000000462 INF: FPGA: Recv ZSGSRD 35097
17-03-18 01:13:03.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:03.830 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:03.830 -07 000000437 INF: FPGA: Recv ZPIEZORD 30669
17-03-18 01:13:03.840 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:03.840 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.526 V. Piezo Error = -9.7 V.
17-03-18 01:13:03.840 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35096 (-164.9 uncal um), Error = 0.8 uncal um, Median = 35096 (-164.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35091 (-164.9 uncal um), Max = 35100 (-164.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:13:03.840 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35096, posNoise = 4, negNoise = 5
17-03-18 01:13:03.840 -07 000000610 INF: Z Motor: After move to -0.165768, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:03.840 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:13:03.840 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:03.840 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:03.840 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:03.840 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:13:03.840 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:13:03.840 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:03.840 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:13:03.840 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:03.840 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:13:03.840 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:13:03.840 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:03.840 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:13:03.850 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:13:03.850 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:13:03.850 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:13:03.850 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:13:03.860 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:13:03.860 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:13:03.860 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:13:03.860 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:13:03.870 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36388 150\n [Camera]
17-03-18 01:13:04.070 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 01:13:04.230 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.974486,
17-03-18 01:13:04.460 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:13:04.460 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:13:04.460 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:04.460 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:13:04.460 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:13:04.460 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:04.570 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:04.570 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) start.
17-03-18 01:13:04.570 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:04.570 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:13:04.650 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36388 775
17-03-18 01:13:04.800 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:13:04.960 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:13:04.970 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:13:04.970 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:04.970 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:04.970 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-18 01:13:04.970 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:13:04.970 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:13:04.970 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:04.970 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:04.980 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-18 01:13:04.990 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:13:04.990 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:13:04.990 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:04.990 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:13:04.990 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:13:04.990 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:04.990 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:04.990 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:13:04.990 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:04.990 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:13:05.180 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:13:05.180 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:13:05.180 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36388 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:13:05.180 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:13:05.180 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.165787501338378. ------
17-03-18 01:13:05.180 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:05.180 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17211 mm
17-03-18 01:13:05.180 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:13:05.190 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:05.190 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:13:05.190 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:13:05.190 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37597, sync = True, waitForSettling = False)
17-03-18 01:13:05.190 -07 000000430 INF: Z Motor: Moving to -0.172108 mm, started at -0.165788 mm, distance = -6.32 um
17-03-18 01:13:05.190 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:13:05.190 -07 000000579 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 01:13:05.200 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:05.200 -07 000000591 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:13:05.210 -07 000000430 INF: FPGA: Xmit ZDACW 37597\n [Z Motor]
17-03-18 01:13:05.210 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:13:05.210 -07 000000579 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:05.210 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:13:05.210 -07 000000579 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:13:05.210 -07 000000579 INF: Y Motor: Moving 1355 steps-35
17-03-18 01:13:05.220 -07 000000430 INF: FPGA: 'ZDACW 37597' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:13:05.220 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:13:05.230 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:05.230 -07 000000480 INF: FPGA: Recv ZDACR 37597
17-03-18 01:13:05.240 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:13:05.240 -07 000000430 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:13:05.390 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:13:05.390 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 01:13:05.390 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:13:05.390 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:13:05.390 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:05.390 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:13:05.390 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:13:05.390 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:05.400 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:05.400 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:13:05.400 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:05.400 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:13:05.590 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 01:13:05.590 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 01:13:05.630 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:05.630 -07 000000430 INF: FPGA: Recv YRDPOS 151567
17-03-18 01:13:05.640 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:13:05.640 -07 000000579 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:05.640 -07 000000579 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:13:05.640 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.847 mm, average velocity = 2.207 mm/sec
17-03-18 01:13:06.590 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:06.590 -07 000000592 INF: FPGA: Recv YRDPOS 151567
17-03-18 01:13:06.600 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:06.600 -07 000000579 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:06.620 -07 000000579 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:13:06.620 -07 000000579 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:13:06.620 -07 000000579 INF: Y Motor: Moved to 74.0073 after 1426 ms (table move)
17-03-18 01:13:06.620 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172108 mm (DAC = 37597)
17-03-18 01:13:06.620 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:06.620 -07 000000576 INF: FPGA: Recv ZSGSRD 36088
17-03-18 01:13:06.630 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:13:06.630 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:06.630 -07 000000590 INF: FPGA: Recv ZSGSRD 36077
17-03-18 01:13:06.640 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:06.640 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:06.640 -07 000000581 INF: FPGA: Recv ZSGSRD 36076
17-03-18 01:13:06.650 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:06.650 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:06.650 -07 000000444 INF: FPGA: Recv ZSGSRD 36083
17-03-18 01:13:06.660 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:06.660 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:06.660 -07 000000576 INF: FPGA: Recv ZSGSRD 36087
17-03-18 01:13:06.670 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:06.670 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:06.670 -07 000000447 INF: FPGA: Recv ZSGSRD 36081
17-03-18 01:13:06.680 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:06.680 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:06.680 -07 000000461 INF: FPGA: Recv ZSGSRD 36086
17-03-18 01:13:06.690 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:06.690 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:06.690 -07 000000592 INF: FPGA: Recv ZSGSRD 36079
17-03-18 01:13:06.700 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:06.700 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:06.700 -07 000000444 INF: FPGA: Recv ZSGSRD 36077
17-03-18 01:13:06.710 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:06.710 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:06.710 -07 000000447 INF: FPGA: Recv ZSGSRD 36079
17-03-18 01:13:06.720 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:06.720 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:06.720 -07 000000480 INF: FPGA: Recv ZPIEZORD 31970
17-03-18 01:13:06.730 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:06.730 -07 000000437 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.737 V. Piezo Error = -9.1 V.
17-03-18 01:13:06.730 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36081 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36080 (-171.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36076 (-171.2 uncal um), Max = 36088 (-171.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:13:06.730 -07 000000437 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36081, posNoise = 7, negNoise = 5
17-03-18 01:13:06.730 -07 000000437 INF: Z Motor: After move to -0.172108, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:06.730 -07 000000437 INF: Z Motor: Settle wait time = 1430 ms, measure time = 106 ms (allowed 150 ms), total time = 1536 ms
17-03-18 01:13:06.730 -07 000000437 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 01:13:06.780 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-18 01:13:06.780 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:13:06.780 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:06.780 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:06.780 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:06.780 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:06.780 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:13:06.780 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:06.780 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:06.780 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:13:06.790 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:13:06.790 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:13:06.800 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:13:06.800 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:13:06.800 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:13:06.850 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:13:07.150 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:13:07.150 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:13:07.150 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:13:07.150 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 01:13:07.190 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:13:07.190 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 01:13:07.190 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:13:07.240 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:13:07.280 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:13:07.280 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:07.280 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:13:07.280 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:13:07.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:13:07.290 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:07.290 -07 000000455 INF: Autofocus start
17-03-18 01:13:07.290 -07 000000455 INF: MeasureProfile start
17-03-18 01:13:07.290 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:07.300 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:13:07.300 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:13:07.300 -07 000000455 INF: MeasureProfile done
17-03-18 01:13:07.300 -07 000000455 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:13:07.300 -07 000000455 INF: Autofocus finished
17-03-18 01:13:07.500 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:13:07.500 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-18 01:13:07.500 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.172115350298012. ----------
17-03-18 01:13:07.500 -07 000000610 INF: Cycle	84	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:13:07.510 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36094, sync = True, waitForSettling = True)
17-03-18 01:13:07.510 -07 000000610 INF: Z Motor: Moving to -0.165228 mm, started at -0.172115 mm, distance = 6.89 um
17-03-18 01:13:07.510 -07 000000610 INF: FPGA: Xmit ZDACW 36094\n [Z Motor]
17-03-18 01:13:07.510 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:13:07.520 -07 000000610 INF: FPGA: 'ZDACW 36094' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:07.520 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:07.520 -07 000000455 INF: FPGA: Recv ZDACR 36094
17-03-18 01:13:07.530 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:07.530 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:13:07.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:07.680 -07 000000437 INF: FPGA: Recv ZSGSRD 35011
17-03-18 01:13:07.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:07.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:07.690 -07 000000455 INF: FPGA: Recv ZSGSRD 35007
17-03-18 01:13:07.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:07.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:07.700 -07 000000480 INF: FPGA: Recv ZSGSRD 35009
17-03-18 01:13:07.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:07.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:07.710 -07 000000447 INF: FPGA: Recv ZSGSRD 35021
17-03-18 01:13:07.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:07.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:07.720 -07 000000480 INF: FPGA: Recv ZSGSRD 35012
17-03-18 01:13:07.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:07.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:07.730 -07 000000447 INF: FPGA: Recv ZSGSRD 35014
17-03-18 01:13:07.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:07.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:07.740 -07 000000455 INF: FPGA: Recv ZSGSRD 35014
17-03-18 01:13:07.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:07.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:07.750 -07 000000447 INF: FPGA: Recv ZSGSRD 35014
17-03-18 01:13:07.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:07.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:07.760 -07 000000480 INF: FPGA: Recv ZSGSRD 35009
17-03-18 01:13:07.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:07.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:07.770 -07 000000581 INF: FPGA: Recv ZSGSRD 35009
17-03-18 01:13:07.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:07.780 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:07.780 -07 000000480 INF: FPGA: Recv ZPIEZORD 30592
17-03-18 01:13:07.790 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:07.790 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.508 V. Piezo Error = -9.7 V.
17-03-18 01:13:07.790 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.2 um, Read 10 ADC samples: Avg = 35012 (-164.4 uncal um), Error = 0.8 uncal um, Median = 35012 (-164.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35007 (-164.4 uncal um), Max = 35021 (-164.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:13:07.790 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35012, posNoise = 9, negNoise = 5
17-03-18 01:13:07.790 -07 000000610 INF: Z Motor: After move to -0.165228, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:07.790 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:13:07.790 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:07.790 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:07.790 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:07.790 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:07.790 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:13:07.790 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:07.790 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:13:07.790 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:13:07.790 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:07.790 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:13:07.790 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:13:07.790 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:13:07.790 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:13:07.790 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:13:07.790 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:13:07.790 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:13:07.800 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:13:07.800 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:13:07.800 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:13:07.800 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:13:07.810 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36271 150\n [Camera]
17-03-18 01:13:08.010 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:13:08.400 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:13:08.400 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:13:08.400 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:08.400 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:08.400 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:13:08.400 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:13:08.400 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:13:08.400 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:08.400 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:08.400 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 01:13:08.590 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36271 775
17-03-18 01:13:08.740 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:13:08.790 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:13:08.790 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:13:08.790 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:08.790 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 01:13:08.790 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:13:08.790 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:08.790 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:08.790 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:13:08.790 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:08.800 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:13:08.930 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:13:08.930 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:13:08.930 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:08.930 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:13:08.930 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:13:08.930 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:08.930 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:13:08.930 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:08.930 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:08.930 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 01:13:09.120 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:13:09.120 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:13:09.120 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36271 150' command took 4 ms to send, 1306 ms to get response, and 1314 ms overall
17-03-18 01:13:09.120 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:13:09.120 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.16524786751847. ------
17-03-18 01:13:09.130 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:09.130 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17124 mm
17-03-18 01:13:09.130 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:13:09.130 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37406, sync = True, waitForSettling = False)
17-03-18 01:13:09.130 -07 000000576 INF: Z Motor: Moving to -0.171234 mm, started at -0.165248 mm, distance = -5.99 um
17-03-18 01:13:09.130 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:09.130 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:13:09.130 -07 000000455 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 01:13:09.140 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:13:09.140 -07 000000576 INF: FPGA: Xmit ZDACW 37406\n [Z Motor]
17-03-18 01:13:09.140 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:13:09.150 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:09.150 -07 000000576 INF: FPGA: 'ZDACW 37406' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:13:09.150 -07 000000462 INF: FPGA: Recv YRDPOS 151568
17-03-18 01:13:09.160 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:13:09.160 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 01:13:09.160 -07 000000455 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:09.160 -07 000000455 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:13:09.160 -07 000000455 INF: Y Motor: Moving 1352 steps-31
17-03-18 01:13:09.170 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:09.170 -07 000000592 INF: FPGA: Recv ZDACR 37406
17-03-18 01:13:09.180 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:13:09.180 -07 000000576 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 01:13:09.180 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:13:09.330 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:13:09.340 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:13:09.340 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:09.340 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:13:09.340 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:13:09.340 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:09.340 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:13:09.340 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:13:09.340 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:09.350 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:13:09.360 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:13:09.360 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:13:09.550 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 01:13:09.550 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:13:09.590 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:09.590 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.000345,
17-03-18 01:13:09.590 -07 000000576 INF: FPGA: Recv YRDPOS 153254
17-03-18 01:13:09.600 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:13:09.600 -07 000000455 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:09.600 -07 000000455 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 01:13:09.600 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-18 01:13:10.550 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:10.550 -07 000000581 INF: FPGA: Recv YRDPOS 153254
17-03-18 01:13:10.560 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:10.560 -07 000000455 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:10.570 -07 000000455 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:13:10.570 -07 000000455 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:13:10.570 -07 000000455 INF: Y Motor: Moved to 74.8311 after 1439 ms (table move)
17-03-18 01:13:10.580 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171234 mm (DAC = 37406)
17-03-18 01:13:10.580 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:10.580 -07 000000462 INF: FPGA: Recv ZSGSRD 35948
17-03-18 01:13:10.590 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:13:10.590 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:10.590 -07 000000581 INF: FPGA: Recv ZSGSRD 35935
17-03-18 01:13:10.600 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:10.600 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:10.600 -07 000000579 INF: FPGA: Recv ZSGSRD 35945
17-03-18 01:13:10.610 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:10.610 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:10.610 -07 000000581 INF: FPGA: Recv ZSGSRD 35948
17-03-18 01:13:10.620 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:10.620 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:10.620 -07 000000461 INF: FPGA: Recv ZSGSRD 35948
17-03-18 01:13:10.630 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:10.630 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:10.630 -07 000000581 INF: FPGA: Recv ZSGSRD 35956
17-03-18 01:13:10.640 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:10.640 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:10.640 -07 000000579 INF: FPGA: Recv ZSGSRD 35941
17-03-18 01:13:10.650 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:10.650 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:10.650 -07 000000461 INF: FPGA: Recv ZSGSRD 35947
17-03-18 01:13:10.660 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:10.660 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:10.660 -07 000000462 INF: FPGA: Recv ZSGSRD 35944
17-03-18 01:13:10.670 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:10.670 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:10.670 -07 000000581 INF: FPGA: Recv ZSGSRD 35942
17-03-18 01:13:10.680 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:10.680 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:10.680 -07 000000579 INF: FPGA: Recv ZPIEZORD 31806
17-03-18 01:13:10.690 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:10.690 -07 000000447 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.708 V. Piezo Error = -9.1 V.
17-03-18 01:13:10.690 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35945 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35946 (-170.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 35935 (-170.3 uncal um), Max = 35956 (-170.4 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:13:10.690 -07 000000447 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35945, posNoise = 11, negNoise = 10
17-03-18 01:13:10.690 -07 000000447 INF: Z Motor: After move to -0.171234, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:10.690 -07 000000447 INF: Z Motor: Settle wait time = 1444 ms, measure time = 108 ms (allowed 150 ms), total time = 1552 ms
17-03-18 01:13:10.690 -07 000000447 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:13:10.740 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 01:13:10.740 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:13:10.740 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:10.740 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:10.740 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:10.740 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:10.750 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:13:10.750 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:10.750 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:10.750 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:13:10.750 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:13:10.750 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:13:10.760 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:13:10.760 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:13:10.760 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:13:10.810 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:13:11.110 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:13:11.110 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:13:11.110 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:13:11.110 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2642931184, 0x0, 559484976) start.
17-03-18 01:13:11.150 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:13:11.150 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 01:13:11.150 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 387 ms overall
17-03-18 01:13:11.220 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2642931184, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 01:13:11.220 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:11.230 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:13:11.230 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 01:13:11.250 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:11.250 -07 000000579 INF: Autofocus start
17-03-18 01:13:11.250 -07 000000579 INF: MeasureProfile start
17-03-18 01:13:11.250 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:11.260 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:13:11.260 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:13:11.260 -07 000000579 INF: MeasureProfile done
17-03-18 01:13:11.260 -07 000000579 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:13:11.260 -07 000000579 INF: Autofocus finished
17-03-18 01:13:11.460 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:13:11.460 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:13:11.460 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171241657446733. ----------
17-03-18 01:13:11.460 -07 000000610 INF: Cycle	84	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:13:11.470 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35921, sync = True, waitForSettling = True)
17-03-18 01:13:11.470 -07 000000610 INF: Z Motor: Moving to -0.164436 mm, started at -0.171242 mm, distance = 6.81 um
17-03-18 01:13:11.470 -07 000000610 INF: FPGA: Xmit ZDACW 35921\n [Z Motor]
17-03-18 01:13:11.470 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 01:13:11.480 -07 000000610 INF: FPGA: 'ZDACW 35921' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:13:11.480 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:11.480 -07 000000447 INF: FPGA: Recv ZDACR 35921
17-03-18 01:13:11.490 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:11.490 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:13:11.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:11.640 -07 000000447 INF: FPGA: Recv ZSGSRD 34882
17-03-18 01:13:11.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:11.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:11.650 -07 000000579 INF: FPGA: Recv ZSGSRD 34892
17-03-18 01:13:11.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:11.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:11.660 -07 000000592 INF: FPGA: Recv ZSGSRD 34883
17-03-18 01:13:11.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:11.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:11.670 -07 000000579 INF: FPGA: Recv ZSGSRD 34891
17-03-18 01:13:11.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:11.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:11.680 -07 000000579 INF: FPGA: Recv ZSGSRD 34885
17-03-18 01:13:11.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:11.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:11.690 -07 000000480 INF: FPGA: Recv ZSGSRD 34891
17-03-18 01:13:11.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:11.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:11.700 -07 000000447 INF: FPGA: Recv ZSGSRD 34893
17-03-18 01:13:11.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:11.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:11.710 -07 000000592 INF: FPGA: Recv ZSGSRD 34885
17-03-18 01:13:11.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:11.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:11.720 -07 000000480 INF: FPGA: Recv ZSGSRD 34891
17-03-18 01:13:11.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:11.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:11.730 -07 000000447 INF: FPGA: Recv ZSGSRD 34884
17-03-18 01:13:11.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:11.740 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:11.740 -07 000000592 INF: FPGA: Recv ZPIEZORD 30398
17-03-18 01:13:11.750 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:11.750 -07 000000610 INF: Z Motor: Piezo is near 44.9 V (nominally 0 to 100 V), expect near 54.8 V, since DAC is at 5.481 V. Piezo Error = -9.9 V.
17-03-18 01:13:11.750 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.4 um, Read 10 ADC samples: Avg = 34888 (-163.6 uncal um), Error = 0.8 uncal um, Median = 34888 (-163.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 34882 (-163.6 uncal um), Max = 34893 (-163.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:13:11.750 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34888, posNoise = 5, negNoise = 6
17-03-18 01:13:11.750 -07 000000610 INF: Z Motor: After move to -0.164436, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:11.750 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:13:11.750 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:11.750 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:11.750 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:11.750 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:11.750 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:13:11.750 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:13:11.750 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:13:11.750 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:11.750 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:13:11.750 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:13:11.750 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:11.750 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:13:11.760 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:13:11.760 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:13:11.760 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:13:11.760 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:13:11.770 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:13:11.770 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:13:11.770 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:13:11.770 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:13:11.770 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36098 150\n [Camera]
17-03-18 01:13:11.970 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 01:13:12.240 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:13:12.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:13:12.360 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:13:12.360 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:13:12.360 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:12.360 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:12.360 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 01:13:12.360 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:13:12.360 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:13:12.360 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:12.360 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:12.360 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:13:12.550 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36098 775
17-03-18 01:13:12.700 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:13:12.750 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 01:13:12.750 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:13:12.750 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:12.750 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:13:12.750 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:13:12.750 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:12.760 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:12.760 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:12.760 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:13:12.760 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:13:12.890 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:13:12.890 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:13:12.890 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:12.890 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:12.890 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:13:12.890 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:13:12.890 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:13:12.890 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:12.890 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:12.890 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:13:13.080 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:13:13.080 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:13:13.080 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36098 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-18 01:13:13.300 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 01:13:13.300 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:13:13.300 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:13.300 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 01:13:13.300 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:13:13.300 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:13.300 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:13.300 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:13:13.300 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 01:13:13.300 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:13:13.310 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:13:13.350 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 01:13:13.350 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:13:13.390 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 01:13:13.390 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 01:13:13.390 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:13:13.390 -07 000000590 INF: FPGA: Recv EMCUR 
17-03-18 01:13:13.400 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:13:13.400 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 01:13:13.900 -07 000000447 INF: FPGA: Recv EMIN
17-03-18 01:13:13.900 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 01:13:13.900 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 01:13:13.900 -07 000000590 INF: FPGA: Recv EMCUR 
17-03-18 01:13:13.910 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:13:13.910 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:13:13.910 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164451265212891. ------
17-03-18 01:13:13.910 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:13.910 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13915 mm
17-03-18 01:13:13.910 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:13:13.910 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:13:13.910 -07 000000590 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 01:13:13.910 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:13.920 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:13:13.920 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 30397, sync = True, waitForSettling = False)
17-03-18 01:13:13.920 -07 000000430 INF: Z Motor: Moving to -0.139149 mm, started at -0.164451 mm, distance = 25.30 um
17-03-18 01:13:13.920 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:13:13.930 -07 000000430 INF: FPGA: Xmit ZDACW 30397\n [Z Motor]
17-03-18 01:13:13.930 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 01:13:13.940 -07 000000430 INF: FPGA: 'ZDACW 30397' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:13:13.940 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:13.940 -07 000000480 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:13:13.950 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 01:13:13.950 -07 000000590 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:13.950 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:13.950 -07 000000480 INF: FPGA: Recv ZDACR 30397
17-03-18 01:13:13.950 -07 000000590 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 01:13:13.950 -07 000000590 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:13:13.960 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:13:13.960 -07 000000430 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 01:13:13.960 -07 000000590 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:13:14.120 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:13:14.120 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 01:13:14.970 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.019446,
17-03-18 01:13:15.580 -07 000000576 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 01:13:15.580 -07 000000590 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1631 ms overall
17-03-18 01:13:15.580 -07 000000590 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:13:15.580 -07 000000590 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 01:13:15.580 -07 000000590 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1631 ms, distance = 14.918 mm, average velocity = 9.147 mm/sec
17-03-18 01:13:17.240 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:13:17.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:13:18.430 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:18.430 -07 000000455 INF: FPGA: Recv YRDPOS 122698
17-03-18 01:13:18.440 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:18.440 -07 000000590 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:18.470 -07 000000590 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:13:18.470 -07 000000590 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 01:13:18.470 -07 000000590 INF: Y Motor: Moved to 59.9111 after 4554 ms
17-03-18 01:13:18.470 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139149 mm (DAC = 30397)
17-03-18 01:13:18.470 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:18.480 -07 000000590 INF: FPGA: Recv ZSGSRD 30950
17-03-18 01:13:18.480 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:13:18.480 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:18.480 -07 000000581 INF: FPGA: Recv ZSGSRD 30950
17-03-18 01:13:18.490 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:18.490 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:18.490 -07 000000590 INF: FPGA: Recv ZSGSRD 30950
17-03-18 01:13:18.500 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:18.500 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:18.500 -07 000000430 INF: FPGA: Recv ZSGSRD 30952
17-03-18 01:13:18.510 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:13:18.510 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:18.510 -07 000000447 INF: FPGA: Recv ZSGSRD 30948
17-03-18 01:13:18.520 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:18.520 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:18.520 -07 000000579 INF: FPGA: Recv ZSGSRD 30955
17-03-18 01:13:18.530 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:18.530 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:18.530 -07 000000606 INF: FPGA: Recv ZSGSRD 30950
17-03-18 01:13:18.540 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:18.540 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:18.540 -07 000000606 INF: FPGA: Recv ZSGSRD 30951
17-03-18 01:13:18.550 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:18.550 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:18.550 -07 000000447 INF: FPGA: Recv ZSGSRD 30950
17-03-18 01:13:18.560 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:18.560 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:18.560 -07 000000579 INF: FPGA: Recv ZSGSRD 30950
17-03-18 01:13:18.570 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:18.570 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:18.570 -07 000000579 INF: FPGA: Recv ZPIEZORD 26299
17-03-18 01:13:18.580 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:18.580 -07 000000592 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.638 V. Piezo Error = -10.2 V.
17-03-18 01:13:18.580 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30951 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30950 (-138.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30948 (-138.3 uncal um), Max = 30955 (-138.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:13:18.580 -07 000000592 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30951, posNoise = 4, negNoise = 3
17-03-18 01:13:18.580 -07 000000592 INF: Z Motor: After move to -0.139149, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:18.580 -07 000000592 INF: Z Motor: Settle wait time = 4556 ms, measure time = 104 ms (allowed 150 ms), total time = 4660 ms
17-03-18 01:13:18.580 -07 000000592 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 01:13:18.630 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4713 ms
17-03-18 01:13:18.630 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:13:18.630 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:18.630 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:18.630 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:18.630 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:18.630 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:13:18.630 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:18.630 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:13:18.630 -07 000000430 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:13:18.660 -07 000000430 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 01:13:18.660 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:13:18.660 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 01:13:18.660 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:13:18.680 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:13:18.680 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-18 01:13:18.680 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:13:18.720 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:13:19.020 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:13:19.020 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:13:19.020 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:13:19.020 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 01:13:19.060 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:13:19.060 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 01:13:19.060 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:13:19.140 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:13:19.140 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:19.140 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:13:19.140 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:13:19.160 -07 000000447 INF: Image SNR check: start
17-03-18 01:13:19.160 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:19.160 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:19.170 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:13:19.170 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:13:19.180 -07 000000447 INF: Image SNR check: pass  [peak (Max-Min)=185.39]
17-03-18 01:13:19.180 -07 000000447 INF: Autofocus start
17-03-18 01:13:19.180 -07 000000447 INF: MeasureProfile start
17-03-18 01:13:19.190 -07 000000447 INF: MeasureProfile done
17-03-18 01:13:19.190 -07 000000447 INF: X=32  Z correction [um]=0.1299841
17-03-18 01:13:19.190 -07 000000447 INF: Autofocus finished
17-03-18 01:13:19.370 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:13:19.370 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 01:13:19.380 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139159142010778. ----------
17-03-18 01:13:19.380 -07 000000610 INF: Cycle	84	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:13:19.380 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28938, sync = True, waitForSettling = True)
17-03-18 01:13:19.380 -07 000000610 INF: Z Motor: Moving to -0.132470 mm, started at -0.139159 mm, distance = 6.69 um
17-03-18 01:13:19.380 -07 000000610 INF: FPGA: Xmit ZDACW 28938\n [Z Motor]
17-03-18 01:13:19.380 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:13:19.390 -07 000000610 INF: FPGA: 'ZDACW 28938' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:13:19.390 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:19.390 -07 000000447 INF: FPGA: Recv ZDACR 28938
17-03-18 01:13:19.400 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:19.400 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:13:19.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:19.550 -07 000000447 INF: FPGA: Recv ZSGSRD 29905
17-03-18 01:13:19.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:19.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:19.560 -07 000000444 INF: FPGA: Recv ZSGSRD 29911
17-03-18 01:13:19.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:19.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:19.570 -07 000000447 INF: FPGA: Recv ZSGSRD 29907
17-03-18 01:13:19.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:19.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:19.580 -07 000000430 INF: FPGA: Recv ZSGSRD 29909
17-03-18 01:13:19.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:19.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:19.590 -07 000000444 INF: FPGA: Recv ZSGSRD 29916
17-03-18 01:13:19.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:19.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:19.600 -07 000000444 INF: FPGA: Recv ZSGSRD 29911
17-03-18 01:13:19.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:19.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:19.610 -07 000000430 INF: FPGA: Recv ZSGSRD 29918
17-03-18 01:13:19.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:19.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:19.620 -07 000000444 INF: FPGA: Recv ZSGSRD 29909
17-03-18 01:13:19.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:19.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:19.630 -07 000000430 INF: FPGA: Recv ZSGSRD 29904
17-03-18 01:13:19.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:19.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:19.640 -07 000000447 INF: FPGA: Recv ZSGSRD 29909
17-03-18 01:13:19.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:19.650 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:19.650 -07 000000592 INF: FPGA: Recv ZPIEZORD 25226
17-03-18 01:13:19.660 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:19.660 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -10.3 V.
17-03-18 01:13:19.660 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29910 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29909 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29904 (-131.6 uncal um), Max = 29918 (-131.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:13:19.660 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29910, posNoise = 8, negNoise = 6
17-03-18 01:13:19.660 -07 000000610 INF: Z Motor: After move to -0.132470, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:19.660 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:13:19.660 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:19.660 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:19.660 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:19.660 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:19.660 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:13:19.660 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:13:19.660 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:13:19.660 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:19.660 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:13:19.660 -07 000000447 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:13:19.660 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:19.660 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:13:19.670 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:13:19.670 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:13:19.670 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:13:19.670 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:13:19.680 -07 000000447 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 01:13:19.680 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:13:19.690 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:13:19.690 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:13:19.690 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:13:19.690 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-18 01:13:19.700 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29114 150\n [Camera]
17-03-18 01:13:19.900 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:13:20.290 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:13:20.290 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:13:20.290 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:20.290 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:13:20.290 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:13:20.290 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:20.290 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:20.290 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 01:13:20.290 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:20.290 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:13:20.340 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.000345,
17-03-18 01:13:20.480 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29114 775
17-03-18 01:13:20.630 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:13:20.680 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 01:13:20.680 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 01:13:20.680 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:20.680 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:20.680 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:13:20.680 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:13:20.680 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:20.690 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:20.690 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:13:20.690 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:13:20.820 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:13:20.820 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:13:20.820 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:20.820 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:13:20.820 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:13:20.820 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:20.940 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:20.940 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-18 01:13:20.940 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:20.940 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) start.
17-03-18 01:13:21.010 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:13:21.010 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:13:21.010 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29114 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-18 01:13:21.010 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:13:21.010 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.132471537171205. ------
17-03-18 01:13:21.010 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:21.010 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13870 mm
17-03-18 01:13:21.010 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:13:21.020 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:21.020 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 30299, sync = True, waitForSettling = False)
17-03-18 01:13:21.020 -07 000000447 INF: Z Motor: Moving to -0.138700 mm, started at -0.132472 mm, distance = -6.23 um
17-03-18 01:13:21.020 -07 000000447 INF: FPGA: Xmit ZDACW 30299\n [Z Motor]
17-03-18 01:13:21.020 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:13:21.020 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:13:21.020 -07 000000430 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 01:13:21.020 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:13:21.030 -07 000000447 INF: FPGA: 'ZDACW 30299' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:13:21.030 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:21.030 -07 000000591 INF: FPGA: Recv YRDPOS 122698
17-03-18 01:13:21.040 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:13:21.040 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:13:21.040 -07 000000430 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:21.040 -07 000000430 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:13:21.040 -07 000000430 INF: Y Motor: Moving 1330 steps2
17-03-18 01:13:21.050 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:21.050 -07 000000462 INF: FPGA: Recv ZDACR 30299
17-03-18 01:13:21.060 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:13:21.060 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:13:21.060 -07 000000447 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 01:13:21.240 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:13:21.240 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 01:13:21.340 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:13:21.340 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:13:21.340 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:21.340 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:13:21.340 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:13:21.340 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:21.340 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:21.340 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:21.340 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 01:13:21.350 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-18 01:13:21.430 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 01:13:21.430 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:13:21.470 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:21.470 -07 000000592 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:13:21.480 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:13:21.480 -07 000000430 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:21.480 -07 000000430 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:13:21.480 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-18 01:13:22.240 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:13:22.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:13:22.430 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:22.430 -07 000000579 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:13:22.440 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:22.440 -07 000000430 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:22.460 -07 000000430 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:13:22.460 -07 000000430 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:13:22.460 -07 000000430 INF: Y Motor: Moved to 60.7329 after 1444 ms (table move)
17-03-18 01:13:22.470 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138700 mm (DAC = 30299)
17-03-18 01:13:22.470 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:22.470 -07 000000591 INF: FPGA: Recv ZSGSRD 30879
17-03-18 01:13:22.480 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:22.480 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:22.480 -07 000000444 INF: FPGA: Recv ZSGSRD 30879
17-03-18 01:13:22.490 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:22.490 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:22.490 -07 000000591 INF: FPGA: Recv ZSGSRD 30882
17-03-18 01:13:22.500 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:22.500 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:22.500 -07 000000579 INF: FPGA: Recv ZSGSRD 30884
17-03-18 01:13:22.510 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:22.510 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:22.510 -07 000000444 INF: FPGA: Recv ZSGSRD 30884
17-03-18 01:13:22.520 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:22.520 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:22.520 -07 000000592 INF: FPGA: Recv ZSGSRD 30884
17-03-18 01:13:22.530 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:22.530 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:22.530 -07 000000579 INF: FPGA: Recv ZSGSRD 30876
17-03-18 01:13:22.540 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:22.540 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:22.540 -07 000000592 INF: FPGA: Recv ZSGSRD 30876
17-03-18 01:13:22.550 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:22.550 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:22.550 -07 000000444 INF: FPGA: Recv ZSGSRD 30882
17-03-18 01:13:22.560 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:22.560 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:22.560 -07 000000606 INF: FPGA: Recv ZSGSRD 30881
17-03-18 01:13:22.570 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:22.570 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:22.570 -07 000000579 INF: FPGA: Recv ZPIEZORD 26495
17-03-18 01:13:22.580 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:22.580 -07 000000585 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.623 V. Piezo Error = -9.6 V.
17-03-18 01:13:22.580 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30881 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30882 (-137.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30876 (-137.9 uncal um), Max = 30884 (-137.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:13:22.580 -07 000000585 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30881, posNoise = 3, negNoise = 5
17-03-18 01:13:22.580 -07 000000585 INF: Z Motor: After move to -0.138700, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:22.580 -07 000000585 INF: Z Motor: Settle wait time = 1448 ms, measure time = 110 ms (allowed 150 ms), total time = 1558 ms
17-03-18 01:13:22.580 -07 000000585 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:13:22.620 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 01:13:22.620 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:13:22.620 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:22.620 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:22.620 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:22.620 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:22.620 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:13:22.620 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:22.620 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:22.620 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:13:22.630 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:13:22.630 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:13:22.640 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:13:22.640 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:13:22.640 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:13:22.690 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:13:22.990 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:13:22.990 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:13:22.990 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:13:22.990 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606601088, 0x0, 559484976) start.
17-03-18 01:13:23.030 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:13:23.030 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 01:13:23.030 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 385 ms overall
17-03-18 01:13:23.120 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606601088, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:13:23.120 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:23.120 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:13:23.120 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:13:23.130 -07 000000592 INF: Autofocus start
17-03-18 01:13:23.130 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:23.130 -07 000000592 INF: MeasureProfile start
17-03-18 01:13:23.130 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:23.140 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:13:23.140 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:13:23.140 -07 000000592 INF: MeasureProfile done
17-03-18 01:13:23.140 -07 000000592 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:13:23.140 -07 000000592 INF: Autofocus finished
17-03-18 01:13:23.340 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:13:23.340 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:13:23.340 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.138709447160855. ----------
17-03-18 01:13:23.340 -07 000000610 INF: Cycle	84	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:13:23.350 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28807, sync = True, waitForSettling = True)
17-03-18 01:13:23.350 -07 000000610 INF: Z Motor: Moving to -0.131870 mm, started at -0.138709 mm, distance = 6.84 um
17-03-18 01:13:23.350 -07 000000610 INF: FPGA: Xmit ZDACW 28807\n [Z Motor]
17-03-18 01:13:23.350 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:13:23.360 -07 000000610 INF: FPGA: 'ZDACW 28807' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:23.360 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:23.360 -07 000000592 INF: FPGA: Recv ZDACR 28807
17-03-18 01:13:23.370 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:23.370 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:13:23.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:23.520 -07 000000581 INF: FPGA: Recv ZSGSRD 29817
17-03-18 01:13:23.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:23.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:23.530 -07 000000581 INF: FPGA: Recv ZSGSRD 29817
17-03-18 01:13:23.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:23.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:23.540 -07 000000591 INF: FPGA: Recv ZSGSRD 29819
17-03-18 01:13:23.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:23.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:23.550 -07 000000444 INF: FPGA: Recv ZSGSRD 29827
17-03-18 01:13:23.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:23.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:23.560 -07 000000592 INF: FPGA: Recv ZSGSRD 29813
17-03-18 01:13:23.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:23.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:23.570 -07 000000591 INF: FPGA: Recv ZSGSRD 29813
17-03-18 01:13:23.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:23.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:23.580 -07 000000591 INF: FPGA: Recv ZSGSRD 29820
17-03-18 01:13:23.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:23.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:23.590 -07 000000581 INF: FPGA: Recv ZSGSRD 29819
17-03-18 01:13:23.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:23.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:23.600 -07 000000581 INF: FPGA: Recv ZSGSRD 29817
17-03-18 01:13:23.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:23.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:23.610 -07 000000591 INF: FPGA: Recv ZSGSRD 29813
17-03-18 01:13:23.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:23.620 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:23.620 -07 000000592 INF: FPGA: Recv ZPIEZORD 25135
17-03-18 01:13:23.630 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:23.630 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.396 V. Piezo Error = -10.3 V.
17-03-18 01:13:23.630 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29818 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29817 (-131.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29813 (-131.1 uncal um), Max = 29827 (-131.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:13:23.630 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29818, posNoise = 9, negNoise = 5
17-03-18 01:13:23.630 -07 000000610 INF: Z Motor: After move to -0.131870, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:23.630 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:13:23.630 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:23.630 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:23.630 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:23.630 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:23.630 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:13:23.630 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:23.630 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:23.630 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:13:23.630 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:13:23.630 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:13:23.630 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:13:23.630 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:13:23.640 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:13:23.640 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:13:23.640 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:13:23.640 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:13:23.650 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:13:23.650 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:13:23.650 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:13:23.650 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:13:23.660 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28984 150\n [Camera]
17-03-18 01:13:23.860 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:13:24.250 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:13:24.250 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:13:24.250 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:24.250 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:13:24.250 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:13:24.250 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:24.250 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:24.250 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:13:24.250 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:24.250 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:13:24.440 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28984 775
17-03-18 01:13:24.590 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:13:24.640 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:13:24.640 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:13:24.640 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:24.640 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:13:24.640 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:13:24.640 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:24.640 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:24.640 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:24.640 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:13:24.650 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:13:24.780 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:13:24.780 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:13:24.780 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:24.780 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:24.780 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:13:24.780 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:13:24.780 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:13:24.780 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:24.780 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:24.780 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 01:13:24.970 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:13:24.970 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:13:24.970 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28984 150' command took 2 ms to send, 1305 ms to get response, and 1315 ms overall
17-03-18 01:13:24.970 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:13:24.970 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.131880509654163. ------
17-03-18 01:13:24.980 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13855 mm
17-03-18 01:13:24.980 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:13:24.980 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:24.980 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:13:24.980 -07 000000576 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 01:13:24.980 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30266, sync = True, waitForSettling = False)
17-03-18 01:13:24.980 -07 000000579 INF: Z Motor: Moving to -0.138549 mm, started at -0.131881 mm, distance = -6.67 um
17-03-18 01:13:24.980 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:24.990 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:24.990 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:13:24.990 -07 000000590 INF: FPGA: Recv YRDPOS 124382
17-03-18 01:13:25.000 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:13:25.000 -07 000000579 INF: FPGA: Xmit ZDACW 30266\n [Z Motor]
17-03-18 01:13:25.000 -07 000000576 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:25.000 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 01:13:25.000 -07 000000576 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:13:25.000 -07 000000576 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:13:25.010 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:13:25.010 -07 000000579 INF: FPGA: 'ZDACW 30266' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:13:25.020 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:13:25.030 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:25.030 -07 000000592 INF: FPGA: Recv ZDACR 30266
17-03-18 01:13:25.040 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:13:25.040 -07 000000579 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 01:13:25.180 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:13:25.180 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:13:25.180 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:25.180 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:13:25.180 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:13:25.180 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:25.190 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:25.190 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 01:13:25.190 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:25.190 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:13:25.210 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:13:25.210 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 01:13:25.400 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 01:13:25.400 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 370 ms to get response, and 393 ms overall
17-03-18 01:13:25.440 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:25.440 -07 000000480 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:13:25.450 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:13:25.450 -07 000000576 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:25.450 -07 000000576 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:13:25.450 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.137 mm/sec
17-03-18 01:13:25.710 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.994908,
17-03-18 01:13:26.400 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:26.400 -07 000000462 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:13:26.410 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:26.410 -07 000000576 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:26.430 -07 000000576 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:13:26.430 -07 000000576 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:13:26.430 -07 000000576 INF: Y Motor: Moved to 61.5640 after 1451 ms (table move)
17-03-18 01:13:26.440 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138549 mm (DAC = 30266)
17-03-18 01:13:26.440 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:26.440 -07 000000576 INF: FPGA: Recv ZSGSRD 30861
17-03-18 01:13:26.450 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:26.450 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:26.450 -07 000000576 INF: FPGA: Recv ZSGSRD 30864
17-03-18 01:13:26.460 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:26.460 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:26.460 -07 000000576 INF: FPGA: Recv ZSGSRD 30860
17-03-18 01:13:26.470 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:26.470 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:26.470 -07 000000590 INF: FPGA: Recv ZSGSRD 30846
17-03-18 01:13:26.480 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:26.480 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:26.480 -07 000000455 INF: FPGA: Recv ZSGSRD 30851
17-03-18 01:13:26.490 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:26.490 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:26.490 -07 000000455 INF: FPGA: Recv ZSGSRD 30854
17-03-18 01:13:26.500 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:26.500 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:26.500 -07 000000455 INF: FPGA: Recv ZSGSRD 30865
17-03-18 01:13:26.510 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:26.510 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:26.510 -07 000000591 INF: FPGA: Recv ZSGSRD 30862
17-03-18 01:13:26.520 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:26.520 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:26.520 -07 000000592 INF: FPGA: Recv ZSGSRD 30855
17-03-18 01:13:26.530 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:26.530 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:26.530 -07 000000591 INF: FPGA: Recv ZSGSRD 30864
17-03-18 01:13:26.540 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:26.540 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:26.540 -07 000000592 INF: FPGA: Recv ZPIEZORD 26566
17-03-18 01:13:26.550 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:26.550 -07 000000581 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -9.4 V.
17-03-18 01:13:26.550 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30858 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30860 (-137.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30846 (-137.7 uncal um), Max = 30865 (-137.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 01:13:26.550 -07 000000581 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30858, posNoise = 7, negNoise = 12
17-03-18 01:13:26.550 -07 000000581 INF: Z Motor: After move to -0.138549, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:26.550 -07 000000581 INF: Z Motor: Settle wait time = 1455 ms, measure time = 110 ms (allowed 150 ms), total time = 1565 ms
17-03-18 01:13:26.550 -07 000000581 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:13:26.590 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 01:13:26.590 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:13:26.590 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:26.590 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:26.590 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:26.590 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:13:26.590 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:26.590 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:26.590 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:26.590 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:13:26.600 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:13:26.600 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:13:26.610 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:13:26.610 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:13:26.610 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:13:26.650 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:13:26.950 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:13:26.950 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:13:26.950 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:13:26.960 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 01:13:26.990 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:13:26.990 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:13:26.990 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:13:27.070 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:13:27.070 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:27.070 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:13:27.070 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:13:27.090 -07 000000592 INF: Autofocus start
17-03-18 01:13:27.090 -07 000000592 INF: MeasureProfile start
17-03-18 01:13:27.090 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:27.090 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:27.100 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:13:27.100 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:13:27.100 -07 000000592 INF: MeasureProfile done
17-03-18 01:13:27.100 -07 000000592 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:13:27.100 -07 000000592 INF: Autofocus finished
17-03-18 01:13:27.240 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:13:27.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:13:27.300 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:13:27.300 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:13:27.300 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.138561690281595. ----------
17-03-18 01:13:27.300 -07 000000610 INF: Cycle	84	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:13:27.310 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28773, sync = True, waitForSettling = True)
17-03-18 01:13:27.310 -07 000000610 INF: Z Motor: Moving to -0.131714 mm, started at -0.138562 mm, distance = 6.85 um
17-03-18 01:13:27.310 -07 000000610 INF: FPGA: Xmit ZDACW 28773\n [Z Motor]
17-03-18 01:13:27.310 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:13:27.320 -07 000000610 INF: FPGA: 'ZDACW 28773' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:13:27.320 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:27.320 -07 000000591 INF: FPGA: Recv ZDACR 28773
17-03-18 01:13:27.330 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:27.330 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:13:27.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:27.480 -07 000000591 INF: FPGA: Recv ZSGSRD 29796
17-03-18 01:13:27.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:27.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:27.490 -07 000000581 INF: FPGA: Recv ZSGSRD 29795
17-03-18 01:13:27.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:27.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:27.500 -07 000000592 INF: FPGA: Recv ZSGSRD 29791
17-03-18 01:13:27.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:27.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:27.510 -07 000000592 INF: FPGA: Recv ZSGSRD 29791
17-03-18 01:13:27.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:27.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:27.520 -07 000000592 INF: FPGA: Recv ZSGSRD 29792
17-03-18 01:13:27.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:27.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:27.530 -07 000000591 INF: FPGA: Recv ZSGSRD 29805
17-03-18 01:13:27.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:27.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:27.540 -07 000000592 INF: FPGA: Recv ZSGSRD 29796
17-03-18 01:13:27.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:27.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:27.550 -07 000000581 INF: FPGA: Recv ZSGSRD 29790
17-03-18 01:13:27.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:27.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:27.560 -07 000000592 INF: FPGA: Recv ZSGSRD 29791
17-03-18 01:13:27.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:27.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:27.570 -07 000000430 INF: FPGA: Recv ZSGSRD 29793
17-03-18 01:13:27.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:27.580 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:27.580 -07 000000592 INF: FPGA: Recv ZPIEZORD 25149
17-03-18 01:13:27.590 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:27.590 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -10.2 V.
17-03-18 01:13:27.590 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29794 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29792 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29790 (-130.9 uncal um), Max = 29805 (-131.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:13:27.590 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29794, posNoise = 11, negNoise = 4
17-03-18 01:13:27.590 -07 000000610 INF: Z Motor: After move to -0.131714, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:27.590 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:13:27.590 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:27.590 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:27.590 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:27.590 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:13:27.590 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:13:27.590 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:27.590 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:13:27.590 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:27.590 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:13:27.590 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:13:27.590 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:27.590 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:13:27.600 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:13:27.600 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:13:27.600 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:13:27.600 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:13:27.600 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:13:27.600 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:13:27.610 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:13:27.610 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:13:27.610 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28950 150\n [Camera]
17-03-18 01:13:27.810 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:13:28.200 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:13:28.200 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:13:28.200 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:28.200 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:28.200 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:13:28.200 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:13:28.200 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:13:28.200 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:28.200 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:28.200 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 01:13:28.390 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28950 775
17-03-18 01:13:28.540 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:13:28.600 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:13:28.600 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:13:28.600 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:28.600 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:13:28.600 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:13:28.600 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:28.610 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:28.610 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:13:28.610 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:28.610 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:13:28.730 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:13:28.730 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:13:28.730 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:28.730 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:28.730 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 01:13:28.730 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:13:28.730 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:13:28.730 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:28.730 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:28.730 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:13:28.920 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:13:28.920 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:13:28.920 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28950 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-18 01:13:28.920 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:13:28.920 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.131726328562761. ------
17-03-18 01:13:28.920 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:28.930 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13817 mm
17-03-18 01:13:28.930 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:13:28.930 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:28.930 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30184, sync = True, waitForSettling = False)
17-03-18 01:13:28.930 -07 000000461 INF: Z Motor: Moving to -0.138173 mm, started at -0.131726 mm, distance = -6.45 um
17-03-18 01:13:28.930 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:13:28.930 -07 000000606 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 01:13:28.940 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:28.940 -07 000000461 INF: FPGA: Xmit ZDACW 30184\n [Z Motor]
17-03-18 01:13:28.940 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:13:28.950 -07 000000461 INF: FPGA: 'ZDACW 30184' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:13:28.950 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:28.950 -07 000000581 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:13:28.960 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:13:28.960 -07 000000606 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:28.960 -07 000000606 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:13:28.960 -07 000000606 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:13:28.960 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:13:28.970 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:28.970 -07 000000576 INF: FPGA: Recv ZDACR 30184
17-03-18 01:13:28.980 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:13:28.980 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:13:28.980 -07 000000461 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 01:13:29.120 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:13:29.120 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:13:29.120 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:29.130 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:13:29.130 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:13:29.130 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:29.130 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:29.130 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:13:29.130 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:13:29.140 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:13:29.160 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:13:29.160 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 01:13:29.350 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 01:13:29.350 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:13:29.400 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:29.400 -07 000000576 INF: FPGA: Recv YRDPOS 127785
17-03-18 01:13:29.410 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:29.410 -07 000000606 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:29.410 -07 000000606 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 01:13:29.410 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-18 01:13:30.360 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:30.360 -07 000000576 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:13:30.370 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:30.370 -07 000000606 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:30.390 -07 000000606 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:13:30.390 -07 000000606 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:13:30.390 -07 000000606 INF: Y Motor: Moved to 62.3955 after 1460 ms (table move)
17-03-18 01:13:30.390 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138173 mm (DAC = 30184)
17-03-18 01:13:30.390 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:30.400 -07 000000606 INF: FPGA: Recv ZSGSRD 30806
17-03-18 01:13:30.400 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:13:30.400 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:30.400 -07 000000592 INF: FPGA: Recv ZSGSRD 30800
17-03-18 01:13:30.410 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:13:30.410 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:30.410 -07 000000430 INF: FPGA: Recv ZSGSRD 30806
17-03-18 01:13:30.420 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:30.420 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:30.420 -07 000000592 INF: FPGA: Recv ZSGSRD 30800
17-03-18 01:13:30.430 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:30.430 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:30.430 -07 000000430 INF: FPGA: Recv ZSGSRD 30803
17-03-18 01:13:30.440 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:30.440 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:30.440 -07 000000592 INF: FPGA: Recv ZSGSRD 30792
17-03-18 01:13:30.450 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:30.450 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:30.450 -07 000000592 INF: FPGA: Recv ZSGSRD 30797
17-03-18 01:13:30.460 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:30.460 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:30.460 -07 000000461 INF: FPGA: Recv ZSGSRD 30800
17-03-18 01:13:30.470 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:30.470 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:30.470 -07 000000592 INF: FPGA: Recv ZSGSRD 30793
17-03-18 01:13:30.480 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:30.480 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:30.480 -07 000000592 INF: FPGA: Recv ZSGSRD 30799
17-03-18 01:13:30.490 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:30.490 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:30.490 -07 000000461 INF: FPGA: Recv ZPIEZORD 26454
17-03-18 01:13:30.500 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:30.500 -07 000000585 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.606 V. Piezo Error = -9.5 V.
17-03-18 01:13:30.500 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30800 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30800 (-137.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30792 (-137.3 uncal um), Max = 30806 (-137.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:13:30.500 -07 000000585 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30800, posNoise = 6, negNoise = 8
17-03-18 01:13:30.500 -07 000000585 INF: Z Motor: After move to -0.138173, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:30.500 -07 000000585 INF: Z Motor: Settle wait time = 1463 ms, measure time = 101 ms (allowed 150 ms), total time = 1564 ms
17-03-18 01:13:30.500 -07 000000585 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:13:30.550 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 01:13:30.550 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:13:30.550 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:30.550 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:30.550 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:30.550 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:30.550 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:13:30.550 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:30.550 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:30.550 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:13:30.560 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:13:30.560 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:13:30.570 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:13:30.570 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:13:30.570 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:13:30.620 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:13:30.920 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:13:30.920 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:13:30.920 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:13:30.920 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 01:13:30.960 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:13:30.960 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 01:13:30.960 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 01:13:31.040 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 01:13:31.040 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:31.040 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:13:31.040 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 01:13:31.060 -07 000000606 INF: Autofocus start
17-03-18 01:13:31.060 -07 000000606 INF: MeasureProfile start
17-03-18 01:13:31.060 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:31.070 -07 000000606 INF: MeasureProfile done
17-03-18 01:13:31.070 -07 000000606 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:13:31.070 -07 000000606 INF: Autofocus finished
17-03-18 01:13:31.070 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:31.070 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 8 ms to get response, and 14 ms overall
17-03-18 01:13:31.080 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.024884,
17-03-18 01:13:31.080 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:13:31.720 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:13:31.720 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 630 ms to get response, and 642 ms overall
17-03-18 01:13:31.720 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138189085977372. ----------
17-03-18 01:13:31.720 -07 000000610 INF: Cycle	84	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:13:31.720 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28691, sync = True, waitForSettling = True)
17-03-18 01:13:31.720 -07 000000610 INF: Z Motor: Moving to -0.131339 mm, started at -0.138189 mm, distance = 6.85 um
17-03-18 01:13:31.750 -07 000000610 INF: FPGA: Xmit ZDACW 28691\n [Z Motor]
17-03-18 01:13:31.750 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 01:13:31.760 -07 000000610 INF: FPGA: 'ZDACW 28691' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 01:13:31.780 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:31.780 -07 000000447 INF: FPGA: Recv ZDACR 28691
17-03-18 01:13:31.790 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:13:31.790 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:13:31.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:31.940 -07 000000447 INF: FPGA: Recv ZSGSRD 29739
17-03-18 01:13:31.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:31.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:31.950 -07 000000480 INF: FPGA: Recv ZSGSRD 29734
17-03-18 01:13:31.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:31.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:31.960 -07 000000590 INF: FPGA: Recv ZSGSRD 29728
17-03-18 01:13:31.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:31.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:31.970 -07 000000590 INF: FPGA: Recv ZSGSRD 29734
17-03-18 01:13:31.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:31.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:31.980 -07 000000462 INF: FPGA: Recv ZSGSRD 29736
17-03-18 01:13:31.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:31.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:31.990 -07 000000447 INF: FPGA: Recv ZSGSRD 29736
17-03-18 01:13:32.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:32.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:32.000 -07 000000462 INF: FPGA: Recv ZSGSRD 29728
17-03-18 01:13:32.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:32.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:32.010 -07 000000462 INF: FPGA: Recv ZSGSRD 29727
17-03-18 01:13:32.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:32.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:32.020 -07 000000447 INF: FPGA: Recv ZSGSRD 29735
17-03-18 01:13:32.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:32.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:32.030 -07 000000480 INF: FPGA: Recv ZSGSRD 29732
17-03-18 01:13:32.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:32.040 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:32.040 -07 000000455 INF: FPGA: Recv ZPIEZORD 25115
17-03-18 01:13:32.050 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:32.050 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -10.1 V.
17-03-18 01:13:32.050 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29733 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29734 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29727 (-130.5 uncal um), Max = 29739 (-130.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:13:32.050 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29733, posNoise = 6, negNoise = 6
17-03-18 01:13:32.050 -07 000000610 INF: Z Motor: After move to -0.131339, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:32.050 -07 000000610 INF: Z Motor: MoveAbsStepped took 321 ms)
17-03-18 01:13:32.050 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:32.050 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:32.050 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:32.050 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:32.050 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:13:32.050 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:13:32.050 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:13:32.050 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:32.050 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:13:32.050 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:13:32.050 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:32.050 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:13:32.050 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:13:32.060 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:13:32.060 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:13:32.060 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:13:32.060 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:13:32.060 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:13:32.070 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:13:32.070 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:13:32.070 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28868 150\n [Camera]
17-03-18 01:13:32.240 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:13:32.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:13:32.270 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:13:32.660 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:13:32.660 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:13:32.660 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:32.660 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:32.660 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:13:32.660 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:13:32.660 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:13:32.660 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:32.660 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:32.660 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:13:32.850 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28868 775
17-03-18 01:13:33.000 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:13:33.050 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 01:13:33.050 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 01:13:33.050 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:33.050 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:33.050 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:13:33.050 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:13:33.050 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:33.060 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:33.060 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:13:33.060 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:13:33.190 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:13:33.190 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:13:33.190 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:33.190 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:33.190 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:13:33.190 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:13:33.190 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:13:33.190 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:33.200 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:33.200 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 01:13:33.380 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:13:33.380 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:13:33.380 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28868 150' command took 2 ms to send, 1308 ms to get response, and 1313 ms overall
17-03-18 01:13:33.390 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:13:33.390 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131334451622114. ------
17-03-18 01:13:33.390 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:33.390 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13804 mm
17-03-18 01:13:33.390 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:13:33.390 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:33.390 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:13:33.390 -07 000000590 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 01:13:33.390 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 30156, sync = True, waitForSettling = False)
17-03-18 01:13:33.390 -07 000000447 INF: Z Motor: Moving to -0.138045 mm, started at -0.131334 mm, distance = -6.71 um
17-03-18 01:13:33.400 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:13:33.400 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:33.400 -07 000000462 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:13:33.410 -07 000000447 INF: FPGA: Xmit ZDACW 30156\n [Z Motor]
17-03-18 01:13:33.410 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:13:33.410 -07 000000590 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:33.410 -07 000000590 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:13:33.410 -07 000000590 INF: Y Motor: Moving 1339 steps-16
17-03-18 01:13:33.410 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:13:33.420 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:13:33.420 -07 000000447 INF: FPGA: 'ZDACW 30156' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 01:13:33.430 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:13:33.440 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:33.440 -07 000000591 INF: FPGA: Recv ZDACR 30156
17-03-18 01:13:33.450 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:13:33.450 -07 000000447 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 01:13:33.590 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:13:33.590 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:13:33.590 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:33.600 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:13:33.600 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:13:33.600 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:33.600 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:33.600 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:13:33.600 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:13:33.610 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:13:33.620 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:13:33.620 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:13:33.800 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 01:13:33.800 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:13:33.850 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:34.720 -07 000000581 INF: FPGA: Recv YRDPOS 129482
17-03-18 01:13:34.720 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 860 ms to get response, and 869 ms overall
17-03-18 01:13:34.720 -07 000000590 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:34.720 -07 000000590 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:13:34.720 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-18 01:13:35.670 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:35.670 -07 000000581 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:13:35.680 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:35.680 -07 000000590 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:35.700 -07 000000590 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:13:35.700 -07 000000590 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:13:35.700 -07 000000590 INF: Y Motor: Moved to 63.2241 after 2311 ms (table move)
17-03-18 01:13:35.710 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138045 mm (DAC = 30156)
17-03-18 01:13:35.710 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:35.710 -07 000000581 INF: FPGA: Recv ZSGSRD 30787
17-03-18 01:13:35.720 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:13:35.720 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:35.720 -07 000000590 INF: FPGA: Recv ZSGSRD 30779
17-03-18 01:13:35.730 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:35.730 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:35.730 -07 000000592 INF: FPGA: Recv ZSGSRD 30775
17-03-18 01:13:35.740 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:35.740 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:35.740 -07 000000590 INF: FPGA: Recv ZSGSRD 30782
17-03-18 01:13:35.750 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:35.750 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:35.750 -07 000000590 INF: FPGA: Recv ZSGSRD 30776
17-03-18 01:13:35.760 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:35.760 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:35.760 -07 000000581 INF: FPGA: Recv ZSGSRD 30780
17-03-18 01:13:35.770 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:35.770 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:35.770 -07 000000592 INF: FPGA: Recv ZSGSRD 30781
17-03-18 01:13:35.780 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:35.780 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:35.780 -07 000000592 INF: FPGA: Recv ZSGSRD 30774
17-03-18 01:13:35.790 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:35.790 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:35.790 -07 000000590 INF: FPGA: Recv ZSGSRD 30777
17-03-18 01:13:35.800 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:35.800 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:35.800 -07 000000581 INF: FPGA: Recv ZSGSRD 30776
17-03-18 01:13:35.810 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:35.810 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:35.810 -07 000000590 INF: FPGA: Recv ZPIEZORD 26481
17-03-18 01:13:35.820 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:35.820 -07 000000480 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.602 V. Piezo Error = -9.4 V.
17-03-18 01:13:35.820 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30779 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30778 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30774 (-137.2 uncal um), Max = 30787 (-137.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:13:35.820 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30779, posNoise = 8, negNoise = 5
17-03-18 01:13:35.820 -07 000000480 INF: Z Motor: After move to -0.138045, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:35.820 -07 000000480 INF: Z Motor: Settle wait time = 2314 ms, measure time = 108 ms (allowed 150 ms), total time = 2422 ms
17-03-18 01:13:35.820 -07 000000480 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:13:35.870 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2475 ms
17-03-18 01:13:35.870 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:13:35.870 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:35.870 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:35.870 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:35.870 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:35.870 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:13:35.870 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:35.880 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:35.880 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:13:35.880 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:13:35.880 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:13:35.890 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:13:35.890 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 01:13:35.890 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:13:35.940 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:13:36.240 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:13:36.240 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:13:36.240 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:13:36.240 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 01:13:36.270 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:13:36.280 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:13:36.280 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:13:36.360 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:13:36.360 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:36.370 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:13:36.370 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:13:36.380 -07 000000455 INF: Autofocus start
17-03-18 01:13:36.380 -07 000000455 INF: MeasureProfile start
17-03-18 01:13:36.380 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:36.380 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:36.390 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:13:36.390 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:13:36.390 -07 000000455 INF: MeasureProfile done
17-03-18 01:13:36.390 -07 000000455 INF: X=25  Z correction [um]=0.0963114
17-03-18 01:13:36.390 -07 000000455 INF: Autofocus finished
17-03-18 01:13:36.590 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:13:36.590 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:13:36.590 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138054177522395. ----------
17-03-18 01:13:36.590 -07 000000610 INF: Cycle	84	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:13:36.600 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28690, sync = True, waitForSettling = True)
17-03-18 01:13:36.600 -07 000000610 INF: Z Motor: Moving to -0.131334 mm, started at -0.138054 mm, distance = 6.72 um
17-03-18 01:13:36.600 -07 000000610 INF: FPGA: Xmit ZDACW 28690\n [Z Motor]
17-03-18 01:13:36.600 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:13:36.610 -07 000000610 INF: FPGA: 'ZDACW 28690' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:13:36.610 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:36.610 -07 000000592 INF: FPGA: Recv ZDACR 28690
17-03-18 01:13:36.620 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:36.620 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:13:36.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:36.770 -07 000000590 INF: FPGA: Recv ZSGSRD 29731
17-03-18 01:13:36.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:36.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:36.790 -07 000000455 INF: FPGA: Recv ZSGSRD 29731
17-03-18 01:13:36.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:13:36.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:36.810 -07 000000581 INF: FPGA: Recv ZSGSRD 29735
17-03-18 01:13:36.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:13:36.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:36.820 -07 000000455 INF: FPGA: Recv ZSGSRD 29729
17-03-18 01:13:36.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:36.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:36.830 -07 000000581 INF: FPGA: Recv ZSGSRD 29736
17-03-18 01:13:36.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:36.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:36.840 -07 000000592 INF: FPGA: Recv ZSGSRD 29734
17-03-18 01:13:36.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:36.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:36.850 -07 000000581 INF: FPGA: Recv ZSGSRD 29745
17-03-18 01:13:36.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:36.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:36.860 -07 000000480 INF: FPGA: Recv ZSGSRD 29735
17-03-18 01:13:36.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:36.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:36.870 -07 000000590 INF: FPGA: Recv ZSGSRD 29730
17-03-18 01:13:36.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:36.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:36.880 -07 000000455 INF: FPGA: Recv ZSGSRD 29744
17-03-18 01:13:36.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:36.890 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:36.890 -07 000000455 INF: FPGA: Recv ZPIEZORD 25090
17-03-18 01:13:36.900 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:36.900 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -10.2 V.
17-03-18 01:13:36.900 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29735 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29734 (-130.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29729 (-130.5 uncal um), Max = 29745 (-130.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:13:36.900 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29735, posNoise = 10, negNoise = 6
17-03-18 01:13:36.900 -07 000000610 INF: Z Motor: After move to -0.131334, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:36.900 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-18 01:13:36.900 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:36.900 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:36.900 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:36.900 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:36.900 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:13:36.900 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:36.900 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:13:36.900 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:13:36.900 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:36.900 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:13:36.910 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:13:36.910 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:13:36.910 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:13:36.910 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:13:36.910 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:13:36.910 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:13:36.920 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:13:36.920 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:13:36.920 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:13:36.920 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:13:36.930 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28866 150\n [Camera]
17-03-18 01:13:37.100 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.018051,
17-03-18 01:13:37.120 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:13:37.240 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:13:37.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:13:37.510 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:13:37.510 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:13:37.520 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:37.520 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:37.520 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 01:13:37.520 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:13:37.520 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:13:37.520 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:37.520 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:37.520 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:13:37.710 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28866 775
17-03-18 01:13:37.860 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:13:37.920 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:13:37.920 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:13:37.920 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:37.920 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:13:37.920 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:13:37.920 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:37.920 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:37.920 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:13:37.920 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:37.930 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:13:38.050 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:13:38.050 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:13:38.050 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:38.050 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:38.050 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 01:13:38.050 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:13:38.050 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:13:38.050 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:38.050 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:38.050 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 01:13:38.240 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:13:38.240 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:13:38.240 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28866 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:13:38.240 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:13:38.240 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131347300046397. ------
17-03-18 01:13:38.250 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13775 mm
17-03-18 01:13:38.250 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:13:38.250 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:38.250 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:13:38.250 -07 000000579 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 01:13:38.250 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30092, sync = True, waitForSettling = False)
17-03-18 01:13:38.250 -07 000000461 INF: Z Motor: Moving to -0.137752 mm, started at -0.131347 mm, distance = -6.41 um
17-03-18 01:13:38.250 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:38.260 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:13:38.260 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:38.260 -07 000000480 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:13:38.270 -07 000000461 INF: FPGA: Xmit ZDACW 30092\n [Z Motor]
17-03-18 01:13:38.270 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:13:38.270 -07 000000579 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:38.270 -07 000000579 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:13:38.270 -07 000000579 INF: Y Motor: Moving 1342 steps-18
17-03-18 01:13:38.270 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:13:38.280 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:13:38.280 -07 000000461 INF: FPGA: 'ZDACW 30092' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:13:38.290 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:13:38.300 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:38.300 -07 000000581 INF: FPGA: Recv ZDACR 30092
17-03-18 01:13:38.310 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:13:38.310 -07 000000461 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 01:13:38.450 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:13:38.450 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:13:38.450 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:38.450 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:13:38.450 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:13:38.450 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:38.460 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:38.460 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:13:38.460 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 01:13:38.460 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:13:38.480 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:13:38.480 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:13:38.660 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 01:13:38.660 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:13:38.710 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:38.710 -07 000000461 INF: FPGA: Recv YRDPOS 131188
17-03-18 01:13:38.720 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:38.720 -07 000000579 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:38.720 -07 000000579 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 01:13:38.720 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.112 mm/sec
17-03-18 01:13:39.670 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:39.670 -07 000000592 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:13:39.680 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:39.680 -07 000000579 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:39.700 -07 000000579 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:13:39.700 -07 000000579 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:13:39.700 -07 000000579 INF: Y Motor: Moved to 64.0571 after 1449 ms (table move)
17-03-18 01:13:39.700 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137752 mm (DAC = 30092)
17-03-18 01:13:39.700 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:39.710 -07 000000592 INF: FPGA: Recv ZSGSRD 30741
17-03-18 01:13:39.710 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:13:39.710 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:39.710 -07 000000461 INF: FPGA: Recv ZSGSRD 30731
17-03-18 01:13:39.720 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:13:39.720 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:39.720 -07 000000461 INF: FPGA: Recv ZSGSRD 30733
17-03-18 01:13:39.730 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:39.730 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:39.730 -07 000000461 INF: FPGA: Recv ZSGSRD 30734
17-03-18 01:13:39.740 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:39.740 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:39.740 -07 000000461 INF: FPGA: Recv ZSGSRD 30737
17-03-18 01:13:39.750 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:39.750 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:39.750 -07 000000461 INF: FPGA: Recv ZSGSRD 30739
17-03-18 01:13:39.760 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:39.760 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:39.760 -07 000000579 INF: FPGA: Recv ZSGSRD 30733
17-03-18 01:13:39.770 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:39.770 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:39.770 -07 000000579 INF: FPGA: Recv ZSGSRD 30727
17-03-18 01:13:39.780 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:39.780 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:39.780 -07 000000461 INF: FPGA: Recv ZSGSRD 30732
17-03-18 01:13:39.790 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:39.790 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:39.790 -07 000000461 INF: FPGA: Recv ZSGSRD 30730
17-03-18 01:13:39.800 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:39.800 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:39.800 -07 000000579 INF: FPGA: Recv ZPIEZORD 26457
17-03-18 01:13:39.810 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:39.810 -07 000000590 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -9.4 V.
17-03-18 01:13:39.810 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30734 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30733 (-137.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30727 (-136.9 uncal um), Max = 30741 (-137.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:13:39.810 -07 000000590 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30734, posNoise = 7, negNoise = 7
17-03-18 01:13:39.810 -07 000000590 INF: Z Motor: After move to -0.137752, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:39.810 -07 000000590 INF: Z Motor: Settle wait time = 1453 ms, measure time = 102 ms (allowed 150 ms), total time = 1555 ms
17-03-18 01:13:39.810 -07 000000590 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:13:39.860 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-18 01:13:39.860 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:13:39.860 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:39.860 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:39.860 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:39.860 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:39.860 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:13:39.860 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:39.860 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:13:39.860 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:13:39.870 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:13:39.870 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:13:39.870 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:13:39.870 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:13:39.880 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:13:39.920 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:13:40.220 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:13:40.220 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:13:40.220 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:13:40.220 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start.
17-03-18 01:13:40.260 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:13:40.260 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:13:40.260 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:13:40.350 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 01:13:40.350 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:40.350 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:13:40.350 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 01:13:40.360 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:40.360 -07 000000461 INF: Autofocus start
17-03-18 01:13:40.360 -07 000000461 INF: MeasureProfile start
17-03-18 01:13:40.360 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:40.370 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:13:40.370 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:13:40.370 -07 000000461 INF: MeasureProfile done
17-03-18 01:13:40.370 -07 000000461 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:13:40.370 -07 000000461 INF: Autofocus finished
17-03-18 01:13:40.570 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:13:40.570 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:13:40.570 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.137765087976016. ----------
17-03-18 01:13:40.570 -07 000000610 INF: Cycle	84	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:13:40.580 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28600, sync = True, waitForSettling = True)
17-03-18 01:13:40.580 -07 000000610 INF: Z Motor: Moving to -0.130922 mm, started at -0.137765 mm, distance = 6.84 um
17-03-18 01:13:40.580 -07 000000610 INF: FPGA: Xmit ZDACW 28600\n [Z Motor]
17-03-18 01:13:40.580 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:13:40.590 -07 000000610 INF: FPGA: 'ZDACW 28600' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:13:40.590 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:40.590 -07 000000461 INF: FPGA: Recv ZDACR 28600
17-03-18 01:13:40.600 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:40.600 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:13:40.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:40.750 -07 000000592 INF: FPGA: Recv ZSGSRD 29670
17-03-18 01:13:40.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:40.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:40.760 -07 000000579 INF: FPGA: Recv ZSGSRD 29669
17-03-18 01:13:40.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:40.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:40.770 -07 000000590 INF: FPGA: Recv ZSGSRD 29666
17-03-18 01:13:40.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:40.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:40.780 -07 000000579 INF: FPGA: Recv ZSGSRD 29670
17-03-18 01:13:40.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:40.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:40.790 -07 000000590 INF: FPGA: Recv ZSGSRD 29675
17-03-18 01:13:40.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:40.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:40.800 -07 000000579 INF: FPGA: Recv ZSGSRD 29672
17-03-18 01:13:40.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:40.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:40.810 -07 000000461 INF: FPGA: Recv ZSGSRD 29669
17-03-18 01:13:40.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:40.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:40.820 -07 000000590 INF: FPGA: Recv ZSGSRD 29668
17-03-18 01:13:40.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:40.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:40.830 -07 000000461 INF: FPGA: Recv ZSGSRD 29672
17-03-18 01:13:40.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:40.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:40.840 -07 000000592 INF: FPGA: Recv ZSGSRD 29671
17-03-18 01:13:40.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:40.850 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:40.850 -07 000000592 INF: FPGA: Recv ZPIEZORD 25014
17-03-18 01:13:40.860 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:40.860 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.364 V. Piezo Error = -10.2 V.
17-03-18 01:13:40.860 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29670 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29670 (-130.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29666 (-130.1 uncal um), Max = 29675 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:13:40.860 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29670, posNoise = 5, negNoise = 4
17-03-18 01:13:40.860 -07 000000610 INF: Z Motor: After move to -0.130922, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:40.860 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:13:40.860 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:40.860 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:40.860 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:40.860 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:13:40.860 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:40.860 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:13:40.860 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:13:40.860 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:40.860 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:13:40.860 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:13:40.860 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:13:40.860 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:13:40.870 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:13:40.870 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:13:40.870 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:13:40.870 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:13:40.880 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:13:40.880 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:13:40.880 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:13:40.880 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:13:40.890 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28776 150\n [Camera]
17-03-18 01:13:41.090 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:13:41.480 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:13:41.480 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:13:41.480 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:41.480 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:41.480 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 01:13:41.480 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:13:41.480 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:13:41.480 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:41.480 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:41.480 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 01:13:41.670 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28776 775
17-03-18 01:13:41.820 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:13:41.880 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:13:41.880 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:13:41.880 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:41.880 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:13:41.880 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:13:41.880 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:41.880 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:41.880 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:13:41.880 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:41.890 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:13:42.010 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:13:42.010 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:13:42.010 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:42.140 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:13:42.140 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:13:42.140 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:42.140 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:42.140 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 01:13:42.150 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:42.150 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 01:13:42.200 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:13:42.200 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:13:42.200 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28776 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:13:42.200 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:13:42.200 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.130929726257183. ------
17-03-18 01:13:42.200 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:42.200 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13749 mm
17-03-18 01:13:42.200 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:13:42.210 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:13:42.210 -07 000000447 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 01:13:42.210 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:42.210 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:42.210 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30035, sync = True, waitForSettling = False)
17-03-18 01:13:42.210 -07 000000462 INF: Z Motor: Moving to -0.137491 mm, started at -0.130930 mm, distance = -6.56 um
17-03-18 01:13:42.210 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:13:42.210 -07 000000444 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:13:42.220 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:13:42.220 -07 000000447 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:42.220 -07 000000462 INF: FPGA: Xmit ZDACW 30035\n [Z Motor]
17-03-18 01:13:42.220 -07 000000447 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:13:42.220 -07 000000447 INF: Y Motor: Moving 1337 steps-12
17-03-18 01:13:42.220 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 01:13:42.230 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:13:42.230 -07 000000462 INF: FPGA: 'ZDACW 30035' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:13:42.240 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:13:42.240 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:13:42.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:13:42.250 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:42.250 -07 000000444 INF: FPGA: Recv ZDACR 30035
17-03-18 01:13:42.260 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:13:42.260 -07 000000462 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 01:13:42.430 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:13:42.430 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 01:13:42.460 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.024884,
17-03-18 01:13:42.530 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 01:13:42.530 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 01:13:42.530 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:42.530 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:42.530 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:13:42.530 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:13:42.530 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:42.540 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:42.540 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-18 01:13:42.540 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:13:42.610 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:13:42.610 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:13:42.650 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:42.660 -07 000000461 INF: FPGA: Recv YRDPOS 132871
17-03-18 01:13:42.660 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:13:42.660 -07 000000447 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:42.660 -07 000000447 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:13:42.660 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-18 01:13:43.610 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:43.610 -07 000000461 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:13:43.620 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:43.620 -07 000000447 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:43.640 -07 000000447 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:13:43.640 -07 000000447 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:13:43.640 -07 000000447 INF: Y Motor: Moved to 64.8789 after 1435 ms (table move)
17-03-18 01:13:43.650 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137491 mm (DAC = 30035)
17-03-18 01:13:43.650 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:43.650 -07 000000461 INF: FPGA: Recv ZSGSRD 30691
17-03-18 01:13:43.660 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:13:43.660 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:43.660 -07 000000461 INF: FPGA: Recv ZSGSRD 30689
17-03-18 01:13:43.670 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:43.670 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:43.670 -07 000000447 INF: FPGA: Recv ZSGSRD 30695
17-03-18 01:13:43.680 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:43.680 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:43.680 -07 000000447 INF: FPGA: Recv ZSGSRD 30692
17-03-18 01:13:43.690 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:43.690 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:43.690 -07 000000461 INF: FPGA: Recv ZSGSRD 30699
17-03-18 01:13:43.700 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:43.700 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:43.700 -07 000000447 INF: FPGA: Recv ZSGSRD 30695
17-03-18 01:13:43.710 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:43.710 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:43.710 -07 000000461 INF: FPGA: Recv ZSGSRD 30695
17-03-18 01:13:43.720 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:43.720 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:43.720 -07 000000461 INF: FPGA: Recv ZSGSRD 30693
17-03-18 01:13:43.730 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:43.730 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:43.730 -07 000000447 INF: FPGA: Recv ZSGSRD 30685
17-03-18 01:13:43.740 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:43.740 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:43.740 -07 000000447 INF: FPGA: Recv ZSGSRD 30686
17-03-18 01:13:43.750 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:43.750 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:43.750 -07 000000461 INF: FPGA: Recv ZPIEZORD 26374
17-03-18 01:13:43.760 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:43.760 -07 000000590 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.583 V. Piezo Error = -9.5 V.
17-03-18 01:13:43.760 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30692 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30692 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30685 (-136.7 uncal um), Max = 30699 (-136.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:13:43.760 -07 000000590 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30692, posNoise = 7, negNoise = 7
17-03-18 01:13:43.760 -07 000000590 INF: Z Motor: After move to -0.137491, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:43.760 -07 000000590 INF: Z Motor: Settle wait time = 1439 ms, measure time = 110 ms (allowed 150 ms), total time = 1549 ms
17-03-18 01:13:43.760 -07 000000590 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:13:43.800 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-18 01:13:43.800 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:13:43.800 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:43.800 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:43.800 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:43.800 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:43.800 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:13:43.800 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:43.800 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:43.800 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:13:43.810 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:13:43.810 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:13:43.810 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:13:43.810 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:13:43.820 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:13:43.860 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:13:44.160 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:13:44.160 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:13:44.160 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:13:44.160 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 01:13:44.200 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:13:44.200 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 01:13:44.200 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:13:44.280 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:13:44.280 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:44.280 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:13:44.280 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:13:44.300 -07 000000480 INF: Autofocus start
17-03-18 01:13:44.300 -07 000000480 INF: MeasureProfile start
17-03-18 01:13:44.300 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:44.300 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:44.310 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:13:44.310 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:13:44.310 -07 000000480 INF: MeasureProfile done
17-03-18 01:13:44.310 -07 000000480 INF: X=-64  Z correction [um]=-0.3149434
17-03-18 01:13:44.310 -07 000000480 INF: Autofocus finished
17-03-18 01:13:44.510 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:13:44.510 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:13:44.510 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137495271066062. ----------
17-03-18 01:13:44.510 -07 000000610 INF: Cycle	84	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:13:44.520 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28479, sync = True, waitForSettling = True)
17-03-18 01:13:44.520 -07 000000610 INF: Z Motor: Moving to -0.130369 mm, started at -0.137495 mm, distance = 7.13 um
17-03-18 01:13:44.520 -07 000000610 INF: FPGA: Xmit ZDACW 28479\n [Z Motor]
17-03-18 01:13:44.520 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:13:44.530 -07 000000610 INF: FPGA: 'ZDACW 28479' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:13:44.530 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:44.530 -07 000000576 INF: FPGA: Recv ZDACR 28479
17-03-18 01:13:44.540 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:44.540 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:13:44.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:44.690 -07 000000585 INF: FPGA: Recv ZSGSRD 29580
17-03-18 01:13:44.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:44.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:44.700 -07 000000581 INF: FPGA: Recv ZSGSRD 29580
17-03-18 01:13:44.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:44.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:44.710 -07 000000455 INF: FPGA: Recv ZSGSRD 29589
17-03-18 01:13:44.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:44.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:44.720 -07 000000590 INF: FPGA: Recv ZSGSRD 29582
17-03-18 01:13:44.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:44.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:44.730 -07 000000480 INF: FPGA: Recv ZSGSRD 29580
17-03-18 01:13:44.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:44.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:44.740 -07 000000576 INF: FPGA: Recv ZSGSRD 29586
17-03-18 01:13:44.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:44.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:44.750 -07 000000462 INF: FPGA: Recv ZSGSRD 29584
17-03-18 01:13:44.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:44.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:44.760 -07 000000581 INF: FPGA: Recv ZSGSRD 29583
17-03-18 01:13:44.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:44.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:44.770 -07 000000461 INF: FPGA: Recv ZSGSRD 29580
17-03-18 01:13:44.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:44.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:44.780 -07 000000590 INF: FPGA: Recv ZSGSRD 29582
17-03-18 01:13:44.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:44.790 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:44.790 -07 000000585 INF: FPGA: Recv ZPIEZORD 24949
17-03-18 01:13:44.800 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:44.800 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.346 V. Piezo Error = -10.2 V.
17-03-18 01:13:44.800 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29583 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29582 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29580 (-129.6 uncal um), Max = 29589 (-129.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:13:44.800 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29583, posNoise = 6, negNoise = 3
17-03-18 01:13:44.800 -07 000000610 INF: Z Motor: After move to -0.130369, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:44.800 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:13:44.800 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:44.800 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:44.800 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:44.800 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:13:44.800 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:44.800 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:13:44.800 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:13:44.800 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:13:44.800 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:13:44.800 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:44.800 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:44.800 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:13:44.810 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:13:44.810 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:13:44.810 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:13:44.810 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:13:44.820 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:13:44.820 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:13:44.820 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:13:44.820 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:13:44.820 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28656 150\n [Camera]
17-03-18 01:13:45.020 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:13:45.410 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:13:45.410 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:13:45.410 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:45.410 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:13:45.410 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:13:45.410 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:45.410 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:45.410 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) start.
17-03-18 01:13:45.420 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:45.420 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-18 01:13:45.600 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28656 775
17-03-18 01:13:45.750 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 01:13:45.810 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:13:45.810 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:13:45.810 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:45.810 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:13:45.810 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:13:45.810 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:45.820 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:45.820 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:13:45.820 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:45.940 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:13:45.940 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:13:45.940 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:45.940 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:13:45.940 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:13:45.940 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:45.940 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 532 ms.
17-03-18 01:13:45.950 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:45.950 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:13:45.950 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:45.950 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2567016040, 0x0, 418435064) start.
17-03-18 01:13:46.130 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:13:46.130 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:13:46.130 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28656 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-18 01:13:46.130 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:13:46.130 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.130370819800849. ------
17-03-18 01:13:46.140 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:46.140 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13702 mm
17-03-18 01:13:46.140 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:13:46.140 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:13:46.140 -07 000000590 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 01:13:46.140 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 29932, sync = True, waitForSettling = False)
17-03-18 01:13:46.140 -07 000000592 INF: Z Motor: Moving to -0.137020 mm, started at -0.130371 mm, distance = -6.65 um
17-03-18 01:13:46.140 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:46.150 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:46.150 -07 000000592 INF: FPGA: Xmit ZDACW 29932\n [Z Motor]
17-03-18 01:13:46.150 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:13:46.160 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:46.160 -07 000000592 INF: FPGA: 'ZDACW 29932' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:13:46.160 -07 000000579 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:13:46.170 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:13:46.170 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:13:46.170 -07 000000590 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:46.170 -07 000000590 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:13:46.170 -07 000000590 INF: Y Motor: Moving 1350 steps-29
17-03-18 01:13:46.180 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:46.180 -07 000000455 INF: FPGA: Recv ZDACR 29932
17-03-18 01:13:46.190 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:13:46.190 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:13:46.190 -07 000000592 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:13:46.350 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2567016040, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:13:46.350 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:13:46.350 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:46.350 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:13:46.350 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:13:46.350 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:46.350 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:46.350 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:46.350 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 01:13:46.360 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:13:46.370 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:13:46.370 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:13:46.560 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 01:13:46.560 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:13:46.610 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:46.610 -07 000000576 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:13:46.620 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:46.620 -07 000000590 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:46.620 -07 000000590 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:13:46.620 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 01:13:47.240 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:13:47.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:13:47.570 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:47.570 -07 000000576 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:13:47.580 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:47.580 -07 000000590 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:47.610 -07 000000590 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:13:47.610 -07 000000590 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:13:47.610 -07 000000590 INF: Y Motor: Moved to 65.7139 after 1467 ms (table move)
17-03-18 01:13:47.610 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137020 mm (DAC = 29932)
17-03-18 01:13:47.610 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:47.610 -07 000000590 INF: FPGA: Recv ZSGSRD 30627
17-03-18 01:13:47.620 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:13:47.620 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:47.620 -07 000000576 INF: FPGA: Recv ZSGSRD 30625
17-03-18 01:13:47.630 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:47.630 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:47.630 -07 000000590 INF: FPGA: Recv ZSGSRD 30621
17-03-18 01:13:47.640 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:47.640 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:47.640 -07 000000590 INF: FPGA: Recv ZSGSRD 30621
17-03-18 01:13:47.650 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:47.650 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:47.650 -07 000000576 INF: FPGA: Recv ZSGSRD 30613
17-03-18 01:13:47.660 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:47.660 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:47.660 -07 000000576 INF: FPGA: Recv ZSGSRD 30616
17-03-18 01:13:47.670 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:47.670 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:47.670 -07 000000576 INF: FPGA: Recv ZSGSRD 30618
17-03-18 01:13:47.680 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:47.680 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:47.680 -07 000000576 INF: FPGA: Recv ZSGSRD 30612
17-03-18 01:13:47.690 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:47.690 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:47.690 -07 000000576 INF: FPGA: Recv ZSGSRD 30621
17-03-18 01:13:47.700 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:47.700 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:47.700 -07 000000576 INF: FPGA: Recv ZSGSRD 30622
17-03-18 01:13:47.710 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:47.710 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:47.710 -07 000000576 INF: FPGA: Recv ZPIEZORD 26316
17-03-18 01:13:47.720 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:47.720 -07 000000591 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.567 V. Piezo Error = -9.5 V.
17-03-18 01:13:47.720 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30620 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30621 (-136.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30612 (-136.2 uncal um), Max = 30627 (-136.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:13:47.720 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30620, posNoise = 7, negNoise = 8
17-03-18 01:13:47.720 -07 000000591 INF: Z Motor: After move to -0.137020, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:47.720 -07 000000591 INF: Z Motor: Settle wait time = 1467 ms, measure time = 107 ms (allowed 150 ms), total time = 1574 ms
17-03-18 01:13:47.720 -07 000000591 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:13:47.770 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 01:13:47.770 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:13:47.770 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:47.770 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:47.770 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:47.770 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:47.770 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:13:47.770 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:47.770 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:47.780 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:13:47.780 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:13:47.780 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:13:47.790 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:13:47.790 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:13:47.790 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:13:47.840 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:13:47.870 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.99219,
17-03-18 01:13:48.140 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:13:48.140 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:13:48.140 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:13:48.140 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2619313368, 0x0, 559484976) start.
17-03-18 01:13:48.180 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:13:48.180 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:13:48.180 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 386 ms overall
17-03-18 01:13:48.260 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2619313368, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 01:13:48.260 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:48.260 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:13:48.260 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 01:13:48.280 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:48.280 -07 000000591 INF: Autofocus start
17-03-18 01:13:48.280 -07 000000591 INF: MeasureProfile start
17-03-18 01:13:48.280 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:48.290 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:13:48.290 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:13:48.290 -07 000000591 INF: MeasureProfile done
17-03-18 01:13:48.290 -07 000000591 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:13:48.290 -07 000000591 INF: Autofocus finished
17-03-18 01:13:48.490 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:13:48.490 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:13:48.490 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.137032727791856. ----------
17-03-18 01:13:48.490 -07 000000610 INF: Cycle	84	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:13:48.500 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28439, sync = True, waitForSettling = True)
17-03-18 01:13:48.500 -07 000000610 INF: Z Motor: Moving to -0.130185 mm, started at -0.137033 mm, distance = 6.85 um
17-03-18 01:13:48.500 -07 000000610 INF: FPGA: Xmit ZDACW 28439\n [Z Motor]
17-03-18 01:13:48.500 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:13:48.510 -07 000000610 INF: FPGA: 'ZDACW 28439' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:48.510 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:48.510 -07 000000447 INF: FPGA: Recv ZDACR 28439
17-03-18 01:13:48.520 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:48.520 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:13:48.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:48.670 -07 000000592 INF: FPGA: Recv ZSGSRD 29557
17-03-18 01:13:48.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:48.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:48.680 -07 000000437 INF: FPGA: Recv ZSGSRD 29553
17-03-18 01:13:48.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:48.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:48.690 -07 000000447 INF: FPGA: Recv ZSGSRD 29554
17-03-18 01:13:48.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:48.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:48.700 -07 000000576 INF: FPGA: Recv ZSGSRD 29551
17-03-18 01:13:48.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:48.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:48.710 -07 000000430 INF: FPGA: Recv ZSGSRD 29553
17-03-18 01:13:48.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:48.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:48.720 -07 000000591 INF: FPGA: Recv ZSGSRD 29556
17-03-18 01:13:48.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:48.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:48.730 -07 000000444 INF: FPGA: Recv ZSGSRD 29557
17-03-18 01:13:48.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:48.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:48.740 -07 000000576 INF: FPGA: Recv ZSGSRD 29555
17-03-18 01:13:48.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:48.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:48.750 -07 000000437 INF: FPGA: Recv ZSGSRD 29553
17-03-18 01:13:48.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:48.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:48.760 -07 000000591 INF: FPGA: Recv ZSGSRD 29552
17-03-18 01:13:48.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:48.770 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:48.770 -07 000000444 INF: FPGA: Recv ZPIEZORD 24941
17-03-18 01:13:48.780 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:48.780 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -10.1 V.
17-03-18 01:13:48.780 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29554 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29554 (-129.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29551 (-129.4 uncal um), Max = 29557 (-129.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:13:48.780 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29554, posNoise = 3, negNoise = 3
17-03-18 01:13:48.780 -07 000000610 INF: Z Motor: After move to -0.130185, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:48.780 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:13:48.780 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:48.780 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:48.780 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:48.780 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:13:48.780 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:48.780 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:48.780 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:13:48.780 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:13:48.780 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:48.780 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:13:48.780 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:13:48.780 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:13:48.780 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:13:48.780 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:13:48.780 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:13:48.790 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:13:48.790 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:13:48.790 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:13:48.800 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:13:48.800 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:13:48.800 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28616 150\n [Camera]
17-03-18 01:13:49.000 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:13:49.390 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:13:49.390 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:13:49.390 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:49.390 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:49.390 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:13:49.390 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:13:49.390 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:13:49.390 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:49.390 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:49.390 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:13:49.580 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28616 775
17-03-18 01:13:49.770 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 01:13:49.770 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 01:13:49.770 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:49.780 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:49.780 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 01:13:49.780 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:13:49.780 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:49.780 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:13:49.780 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:49.790 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:13:49.790 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:13:49.920 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:13:49.920 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:13:49.920 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:50.030 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:13:50.030 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:13:50.040 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:50.040 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:50.040 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:13:50.040 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:50.040 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:13:50.440 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:13:50.450 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:13:50.450 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:50.450 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:13:50.450 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:13:50.450 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:50.450 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:50.450 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:50.450 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-18 01:13:50.460 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-18 01:13:50.460 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:13:50.460 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:13:50.460 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28616 150' command took 2 ms to send, 1655 ms to get response, and 1660 ms overall
17-03-18 01:13:50.460 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:13:50.460 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.130184517648738. ------
17-03-18 01:13:50.470 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13646 mm
17-03-18 01:13:50.470 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:13:50.470 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:51.220 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:13:51.220 -07 000000585 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-18 01:13:51.220 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:52.220 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:52.220 -07 000000581 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:13:52.220 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1740 ms to get response, and 1747 ms overall
17-03-18 01:13:52.220 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 990 ms to get response, and 997 ms overall
17-03-18 01:13:52.220 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:13:52.220 -07 000000585 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:52.220 -07 000000585 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:13:52.220 -07 000000585 INF: Y Motor: Moving 1342 steps-18
17-03-18 01:13:52.220 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29810, sync = True, waitForSettling = False)
17-03-18 01:13:52.220 -07 000000581 INF: Z Motor: Moving to -0.136461 mm, started at -0.130185 mm, distance = -6.28 um
17-03-18 01:13:52.230 -07 000000581 INF: FPGA: Xmit ZDACW 29810\n [Z Motor]
17-03-18 01:13:52.240 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:13:53.220 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:13:53.220 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:13:53.220 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:13:53.220 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:13:53.220 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 997 ms to get response, and 1006 ms overall
17-03-18 01:13:53.220 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 977 ms to get response, and 1005 ms overall
17-03-18 01:13:53.220 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:13:53.220 -07 000000581 INF: FPGA: 'ZDACW 29810' command took 0 ms to send, 987 ms to get response, and 1004 ms overall
17-03-18 01:13:53.230 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:53.230 -07 000000455 INF: FPGA: Recv ZDACR 29810
17-03-18 01:13:53.240 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:13:53.240 -07 000000581 INF: Z Motor: MoveAbsStepped took 1017 ms (did NOT wait for settling yet))
17-03-18 01:13:53.270 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:53.270 -07 000000581 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:13:53.280 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:13:53.280 -07 000000585 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:53.280 -07 000000585 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:13:53.280 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1006 ms, distance = 0.839 mm, average velocity = 0.834 mm/sec
17-03-18 01:13:53.530 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.985358,
17-03-18 01:13:54.230 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:54.230 -07 000000461 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:13:54.240 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:54.240 -07 000000585 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:54.260 -07 000000585 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:13:54.260 -07 000000585 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:13:54.260 -07 000000585 INF: Y Motor: Moved to 66.5391 after 3045 ms (table move)
17-03-18 01:13:54.270 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136461 mm (DAC = 29810)
17-03-18 01:13:54.270 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:54.270 -07 000000455 INF: FPGA: Recv ZSGSRD 30530
17-03-18 01:13:54.280 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:13:54.280 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:54.280 -07 000000585 INF: FPGA: Recv ZSGSRD 30533
17-03-18 01:13:54.290 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:54.290 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:54.290 -07 000000461 INF: FPGA: Recv ZSGSRD 30535
17-03-18 01:13:54.300 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:54.300 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:54.300 -07 000000455 INF: FPGA: Recv ZSGSRD 30528
17-03-18 01:13:54.310 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:54.310 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:54.310 -07 000000461 INF: FPGA: Recv ZSGSRD 30526
17-03-18 01:13:54.320 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:54.320 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:54.320 -07 000000462 INF: FPGA: Recv ZSGSRD 30533
17-03-18 01:13:54.330 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:54.330 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:54.330 -07 000000461 INF: FPGA: Recv ZSGSRD 30534
17-03-18 01:13:54.340 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:54.340 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:54.340 -07 000000579 INF: FPGA: Recv ZSGSRD 30531
17-03-18 01:13:54.350 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:54.350 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:54.350 -07 000000461 INF: FPGA: Recv ZSGSRD 30532
17-03-18 01:13:54.360 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:54.360 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:54.360 -07 000000585 INF: FPGA: Recv ZSGSRD 30533
17-03-18 01:13:54.370 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:54.370 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:54.370 -07 000000461 INF: FPGA: Recv ZPIEZORD 26247
17-03-18 01:13:54.380 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:54.380 -07 000000576 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.549 V. Piezo Error = -9.4 V.
17-03-18 01:13:54.380 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30532 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30532 (-135.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30526 (-135.6 uncal um), Max = 30535 (-135.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:13:54.380 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30532, posNoise = 3, negNoise = 6
17-03-18 01:13:54.380 -07 000000576 INF: Z Motor: After move to -0.136461, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:54.380 -07 000000576 INF: Z Motor: Settle wait time = 2050 ms, measure time = 108 ms (allowed 150 ms), total time = 2158 ms
17-03-18 01:13:54.380 -07 000000576 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:13:54.430 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3957 ms
17-03-18 01:13:54.430 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:13:54.430 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:54.430 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:54.430 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:54.430 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:54.430 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:13:54.430 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:54.430 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:54.430 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:13:54.440 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:13:54.440 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:13:54.450 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:13:54.450 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:13:54.450 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:13:54.500 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:13:54.800 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:13:54.800 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:13:54.800 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:13:54.800 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 01:13:54.840 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:13:54.840 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:13:54.840 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 01:13:54.930 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:13:54.930 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:54.930 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:13:54.930 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:13:54.940 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:54.940 -07 000000461 INF: Autofocus start
17-03-18 01:13:54.940 -07 000000461 INF: MeasureProfile start
17-03-18 01:13:54.940 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:54.950 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:13:54.950 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:13:54.950 -07 000000461 INF: MeasureProfile done
17-03-18 01:13:54.950 -07 000000461 INF: X=32  Z correction [um]=0.1299841
17-03-18 01:13:54.950 -07 000000461 INF: Autofocus finished
17-03-18 01:13:55.150 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:13:55.150 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:13:55.150 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.136467397123381. ----------
17-03-18 01:13:55.150 -07 000000610 INF: Cycle	84	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:13:55.160 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28351, sync = True, waitForSettling = True)
17-03-18 01:13:55.160 -07 000000610 INF: Z Motor: Moving to -0.129783 mm, started at -0.136467 mm, distance = 6.68 um
17-03-18 01:13:55.160 -07 000000610 INF: FPGA: Xmit ZDACW 28351\n [Z Motor]
17-03-18 01:13:55.160 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:13:55.170 -07 000000610 INF: FPGA: 'ZDACW 28351' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:55.170 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:55.170 -07 000000585 INF: FPGA: Recv ZDACR 28351
17-03-18 01:13:55.180 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:55.180 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:13:55.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:55.330 -07 000000461 INF: FPGA: Recv ZSGSRD 29494
17-03-18 01:13:55.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:55.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:55.340 -07 000000585 INF: FPGA: Recv ZSGSRD 29493
17-03-18 01:13:55.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:55.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:55.350 -07 000000461 INF: FPGA: Recv ZSGSRD 29491
17-03-18 01:13:55.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:55.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:55.360 -07 000000462 INF: FPGA: Recv ZSGSRD 29488
17-03-18 01:13:55.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:55.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:55.370 -07 000000437 INF: FPGA: Recv ZSGSRD 29491
17-03-18 01:13:55.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:55.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:55.380 -07 000000585 INF: FPGA: Recv ZSGSRD 29496
17-03-18 01:13:55.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:55.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:55.390 -07 000000462 INF: FPGA: Recv ZSGSRD 29496
17-03-18 01:13:55.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:13:55.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:55.400 -07 000000576 INF: FPGA: Recv ZSGSRD 29489
17-03-18 01:13:55.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:55.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:55.410 -07 000000579 INF: FPGA: Recv ZSGSRD 29487
17-03-18 01:13:55.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:55.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:55.420 -07 000000576 INF: FPGA: Recv ZSGSRD 29491
17-03-18 01:13:55.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:55.430 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:55.430 -07 000000585 INF: FPGA: Recv ZPIEZORD 24873
17-03-18 01:13:55.440 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:55.440 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.326 V. Piezo Error = -10.1 V.
17-03-18 01:13:55.440 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29492 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29491 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29487 (-129.0 uncal um), Max = 29496 (-129.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:13:55.440 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29492, posNoise = 4, negNoise = 5
17-03-18 01:13:55.440 -07 000000610 INF: Z Motor: After move to -0.129783, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:55.440 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:13:55.440 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:55.440 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:55.440 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:55.440 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:55.440 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:13:55.440 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:55.440 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:13:55.440 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:13:55.440 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:55.440 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:13:55.440 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:13:55.440 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:13:55.440 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:13:55.440 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:13:55.450 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:13:55.450 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:13:55.460 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:13:55.460 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:13:55.460 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:13:55.460 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:13:55.460 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28528 150\n [Camera]
17-03-18 01:13:55.660 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:13:56.060 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:13:56.060 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:13:56.060 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:56.060 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:13:56.060 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:13:56.060 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:56.060 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:56.060 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) start.
17-03-18 01:13:56.060 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:56.060 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:13:56.250 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28528 775
17-03-18 01:13:56.400 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:13:56.450 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:13:56.450 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:13:56.450 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:56.460 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:13:56.460 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:13:56.460 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:56.460 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:56.460 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:13:56.460 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:13:56.470 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 01:13:56.590 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:13:56.590 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:13:56.590 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:13:56.700 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:13:56.700 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:13:56.700 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:13:56.710 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:13:56.710 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:13:56.710 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:13:56.710 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:13:56.780 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 01:13:56.780 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:13:56.780 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28528 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-18 01:13:56.780 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:13:56.780 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.129786216495949. ------
17-03-18 01:13:56.790 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:56.790 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13657 mm
17-03-18 01:13:56.790 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:13:56.790 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:13:56.790 -07 000000455 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 01:13:56.800 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:57.080 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 01:13:57.080 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 01:13:57.080 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:57.090 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 01:13:57.090 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 01:13:57.090 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:57.090 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:57.090 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:13:57.090 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-18 01:13:57.100 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:13:57.100 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 29833, sync = True, waitForSettling = False)
17-03-18 01:13:57.100 -07 000000585 INF: Z Motor: Moving to -0.136567 mm, started at -0.129786 mm, distance = -6.78 um
17-03-18 01:13:57.100 -07 000000585 INF: FPGA: Xmit ZDACW 29833\n [Z Motor]
17-03-18 01:13:57.110 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:57.110 -07 000000462 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:13:57.110 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:13:57.110 -07 000000585 INF: FPGA: 'ZDACW 29833' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 01:13:57.110 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:57.110 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 302 ms to get response, and 315 ms overall
17-03-18 01:13:57.110 -07 000000455 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:57.110 -07 000000455 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:13:57.110 -07 000000455 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:13:57.110 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 312 ms to get response, and 319 ms overall
17-03-18 01:13:57.110 -07 000000462 INF: FPGA: Recv ZDACR 29833
17-03-18 01:13:57.120 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:13:57.120 -07 000000585 INF: Z Motor: MoveAbsStepped took 12 ms (did NOT wait for settling yet))
17-03-18 01:13:57.120 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:13:57.130 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:13:57.240 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:13:57.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:13:57.320 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:13:57.320 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-18 01:13:57.500 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 01:13:57.500 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:13:57.550 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:57.550 -07 000000461 INF: FPGA: Recv YRDPOS 137977
17-03-18 01:13:57.560 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:57.560 -07 000000455 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:57.560 -07 000000455 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 01:13:57.560 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.136 mm/sec
17-03-18 01:13:58.510 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:13:58.510 -07 000000461 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:13:58.520 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:58.520 -07 000000455 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:13:58.540 -07 000000455 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:13:58.540 -07 000000455 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:13:58.540 -07 000000455 INF: Y Motor: Moved to 67.3721 after 1749 ms (table move)
17-03-18 01:13:58.550 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136567 mm (DAC = 29833)
17-03-18 01:13:58.550 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:58.550 -07 000000585 INF: FPGA: Recv ZSGSRD 30543
17-03-18 01:13:58.560 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:58.560 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:58.560 -07 000000461 INF: FPGA: Recv ZSGSRD 30550
17-03-18 01:13:58.570 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:58.580 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:58.580 -07 000000461 INF: FPGA: Recv ZSGSRD 30551
17-03-18 01:13:58.590 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:13:58.590 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:58.590 -07 000000455 INF: FPGA: Recv ZSGSRD 30552
17-03-18 01:13:58.600 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:58.600 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:58.600 -07 000000461 INF: FPGA: Recv ZSGSRD 30549
17-03-18 01:13:58.610 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:58.610 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:58.610 -07 000000455 INF: FPGA: Recv ZSGSRD 30548
17-03-18 01:13:58.620 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:58.620 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:58.620 -07 000000461 INF: FPGA: Recv ZSGSRD 30543
17-03-18 01:13:58.630 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:58.630 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:58.630 -07 000000455 INF: FPGA: Recv ZSGSRD 30545
17-03-18 01:13:58.640 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:58.640 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:58.640 -07 000000461 INF: FPGA: Recv ZSGSRD 30547
17-03-18 01:13:58.650 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:58.650 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:58.650 -07 000000461 INF: FPGA: Recv ZSGSRD 30550
17-03-18 01:13:58.660 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:58.660 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:58.660 -07 000000455 INF: FPGA: Recv ZPIEZORD 26301
17-03-18 01:13:58.670 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:58.670 -07 000000576 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.552 V. Piezo Error = -9.3 V.
17-03-18 01:13:58.670 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30548 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30548 (-135.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30543 (-135.7 uncal um), Max = 30552 (-135.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:13:58.670 -07 000000576 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30548, posNoise = 4, negNoise = 5
17-03-18 01:13:58.670 -07 000000576 INF: Z Motor: After move to -0.136567, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:58.670 -07 000000576 INF: Z Motor: Settle wait time = 1442 ms, measure time = 120 ms (allowed 150 ms), total time = 1562 ms
17-03-18 01:13:58.670 -07 000000576 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-18 01:13:58.700 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1907 ms
17-03-18 01:13:58.700 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:13:58.700 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:58.700 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:58.700 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:58.700 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:58.700 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:13:58.700 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:58.710 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:58.710 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:13:58.710 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:13:58.710 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:13:58.720 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:13:58.720 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:13:58.720 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:13:58.770 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:13:58.890 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.004458,
17-03-18 01:13:59.070 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:13:59.070 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:13:59.070 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:13:59.070 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 01:13:59.110 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:13:59.110 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 01:13:59.110 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 01:13:59.200 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:13:59.200 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:13:59.200 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:13:59.200 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:13:59.210 -07 000000591 INF: Autofocus start
17-03-18 01:13:59.210 -07 000000591 INF: MeasureProfile start
17-03-18 01:13:59.220 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:13:59.220 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:13:59.220 -07 000000591 INF: MeasureProfile done
17-03-18 01:13:59.220 -07 000000591 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:13:59.220 -07 000000591 INF: Autofocus finished
17-03-18 01:13:59.230 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:13:59.250 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:13:59.450 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:13:59.450 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:13:59.450 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.136570184517649. ----------
17-03-18 01:13:59.450 -07 000000610 INF: Cycle	84	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:13:59.460 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28357, sync = True, waitForSettling = True)
17-03-18 01:13:59.460 -07 000000610 INF: Z Motor: Moving to -0.129810 mm, started at -0.136570 mm, distance = 6.76 um
17-03-18 01:13:59.460 -07 000000610 INF: FPGA: Xmit ZDACW 28357\n [Z Motor]
17-03-18 01:13:59.460 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:13:59.470 -07 000000610 INF: FPGA: 'ZDACW 28357' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:13:59.470 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:13:59.470 -07 000000591 INF: FPGA: Recv ZDACR 28357
17-03-18 01:13:59.480 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:59.480 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:13:59.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:59.630 -07 000000591 INF: FPGA: Recv ZSGSRD 29500
17-03-18 01:13:59.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:59.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:59.640 -07 000000591 INF: FPGA: Recv ZSGSRD 29496
17-03-18 01:13:59.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:59.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:59.650 -07 000000591 INF: FPGA: Recv ZSGSRD 29493
17-03-18 01:13:59.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:59.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:59.660 -07 000000591 INF: FPGA: Recv ZSGSRD 29498
17-03-18 01:13:59.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:59.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:59.670 -07 000000462 INF: FPGA: Recv ZSGSRD 29501
17-03-18 01:13:59.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:59.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:59.680 -07 000000430 INF: FPGA: Recv ZSGSRD 29496
17-03-18 01:13:59.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:13:59.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:59.690 -07 000000430 INF: FPGA: Recv ZSGSRD 29496
17-03-18 01:13:59.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:59.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:59.700 -07 000000430 INF: FPGA: Recv ZSGSRD 29491
17-03-18 01:13:59.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:59.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:59.710 -07 000000430 INF: FPGA: Recv ZSGSRD 29496
17-03-18 01:13:59.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:59.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:13:59.720 -07 000000430 INF: FPGA: Recv ZSGSRD 29499
17-03-18 01:13:59.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:59.730 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:13:59.730 -07 000000430 INF: FPGA: Recv ZPIEZORD 24892
17-03-18 01:13:59.740 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:13:59.740 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -10.1 V.
17-03-18 01:13:59.740 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29497 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29496 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29491 (-129.0 uncal um), Max = 29501 (-129.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:13:59.740 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29497, posNoise = 4, negNoise = 6
17-03-18 01:13:59.740 -07 000000610 INF: Z Motor: After move to -0.129810, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:13:59.740 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:13:59.740 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:13:59.740 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:13:59.740 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:13:59.740 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:13:59.740 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:13:59.740 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:13:59.740 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:13:59.740 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:13:59.740 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:13:59.740 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:13:59.740 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:13:59.740 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:13:59.750 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:13:59.750 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:13:59.750 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:13:59.750 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:13:59.760 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:13:59.760 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:13:59.760 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:13:59.760 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:13:59.770 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28534 150\n [Camera]
17-03-18 01:13:59.970 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:14:00.360 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:14:00.360 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:14:00.360 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:00.360 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:14:00.360 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:14:00.360 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:00.360 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:00.360 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:14:00.360 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:00.360 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2590502728, 0x0, 391868352) start.
17-03-18 01:14:00.550 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28534 775
17-03-18 01:14:00.700 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:14:00.760 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2590502728, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:14:00.760 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:14:00.760 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:00.760 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:00.760 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:14:00.760 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:14:00.760 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:14:00.760 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:00.770 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:00.770 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:14:00.890 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:14:00.890 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:14:00.890 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:00.990 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:14:00.990 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:14:01.000 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:01.000 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:01.000 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:14:01.000 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:01.000 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:14:01.080 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:14:01.080 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:14:01.080 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28534 150' command took 2 ms to send, 1305 ms to get response, and 1315 ms overall
17-03-18 01:14:01.080 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:14:01.080 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.129818337556658. ------
17-03-18 01:14:01.090 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:01.090 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13628 mm
17-03-18 01:14:01.090 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:14:01.090 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:01.090 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29769, sync = True, waitForSettling = False)
17-03-18 01:14:01.090 -07 000000576 INF: Z Motor: Moving to -0.136274 mm, started at -0.129818 mm, distance = -6.46 um
17-03-18 01:14:01.090 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:14:01.090 -07 000000590 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 01:14:01.100 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:01.100 -07 000000576 INF: FPGA: Xmit ZDACW 29769\n [Z Motor]
17-03-18 01:14:01.110 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:01.120 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:14:01.400 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:14:01.400 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:14:01.400 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:01.400 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:14:01.400 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:14:01.400 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:01.410 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:01.410 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 01:14:01.410 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:14:01.420 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 01:14:01.990 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:14:01.990 -07 000000461 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:14:01.990 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:14:01.990 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 860 ms to get response, and 890 ms overall
17-03-18 01:14:01.990 -07 000000576 INF: FPGA: 'ZDACW 29769' command took 0 ms to send, 880 ms to get response, and 896 ms overall
17-03-18 01:14:01.990 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:01.990 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 870 ms to get response, and 895 ms overall
17-03-18 01:14:01.990 -07 000000590 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:01.990 -07 000000590 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:14:01.990 -07 000000590 INF: Y Motor: Moving 1345 steps-23
17-03-18 01:14:01.990 -07 000000592 INF: FPGA: Recv ZDACR 29769
17-03-18 01:14:02.000 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:14:02.000 -07 000000576 INF: Z Motor: MoveAbsStepped took 906 ms (did NOT wait for settling yet))
17-03-18 01:14:02.000 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:14:02.240 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:14:02.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:14:02.370 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:14:02.370 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 01:14:02.420 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:02.420 -07 000000591 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:14:02.430 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:02.430 -07 000000590 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:02.430 -07 000000590 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:14:02.430 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.841 mm, average velocity = 2.178 mm/sec
17-03-18 01:14:03.380 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:03.380 -07 000000462 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:14:03.390 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:03.390 -07 000000590 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:03.410 -07 000000590 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:14:03.410 -07 000000590 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:14:03.410 -07 000000590 INF: Y Motor: Moved to 68.2056 after 2320 ms (table move)
17-03-18 01:14:03.410 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136274 mm (DAC = 29769)
17-03-18 01:14:03.410 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:03.420 -07 000000461 INF: FPGA: Recv ZSGSRD 30512
17-03-18 01:14:03.430 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:03.430 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:03.430 -07 000000592 INF: FPGA: Recv ZSGSRD 30502
17-03-18 01:14:03.440 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:03.440 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:03.440 -07 000000591 INF: FPGA: Recv ZSGSRD 30512
17-03-18 01:14:03.450 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:03.450 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:03.450 -07 000000462 INF: FPGA: Recv ZSGSRD 30506
17-03-18 01:14:03.460 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:03.460 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:03.460 -07 000000591 INF: FPGA: Recv ZSGSRD 30503
17-03-18 01:14:03.470 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:03.470 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:03.470 -07 000000462 INF: FPGA: Recv ZSGSRD 30502
17-03-18 01:14:03.480 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:03.480 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:03.480 -07 000000576 INF: FPGA: Recv ZSGSRD 30498
17-03-18 01:14:03.490 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:03.490 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:03.490 -07 000000590 INF: FPGA: Recv ZSGSRD 30502
17-03-18 01:14:03.500 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:03.500 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:03.500 -07 000000591 INF: FPGA: Recv ZSGSRD 30505
17-03-18 01:14:03.510 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:03.510 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:03.510 -07 000000462 INF: FPGA: Recv ZSGSRD 30503
17-03-18 01:14:03.520 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:03.520 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:03.520 -07 000000592 INF: FPGA: Recv ZPIEZORD 26242
17-03-18 01:14:03.530 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:03.530 -07 000000606 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.542 V. Piezo Error = -9.4 V.
17-03-18 01:14:03.530 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30504 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30503 (-135.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30498 (-135.5 uncal um), Max = 30512 (-135.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:14:03.530 -07 000000606 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30504, posNoise = 8, negNoise = 6
17-03-18 01:14:03.530 -07 000000606 INF: Z Motor: After move to -0.136274, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:03.530 -07 000000606 INF: Z Motor: Settle wait time = 2325 ms, measure time = 111 ms (allowed 150 ms), total time = 2436 ms
17-03-18 01:14:03.530 -07 000000606 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:14:03.570 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2479 ms
17-03-18 01:14:03.570 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:14:03.570 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:03.570 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:03.570 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:03.570 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:03.570 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:14:03.570 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:03.570 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:14:03.570 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:14:03.580 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:14:03.580 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:14:03.580 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:14:03.580 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:14:03.590 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:14:03.630 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:14:03.930 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:14:03.930 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:14:03.930 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:14:03.930 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 01:14:03.970 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:14:03.970 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:14:03.970 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:14:04.050 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:14:04.050 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:04.050 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:14:04.050 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:14:04.070 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:04.070 -07 000000591 INF: Autofocus start
17-03-18 01:14:04.070 -07 000000591 INF: MeasureProfile start
17-03-18 01:14:04.070 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:04.080 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:14:04.080 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:14:04.080 -07 000000591 INF: MeasureProfile done
17-03-18 01:14:04.080 -07 000000591 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 01:14:04.080 -07 000000591 INF: Autofocus finished
17-03-18 01:14:04.260 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.004458,
17-03-18 01:14:04.280 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:14:04.280 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 208 ms overall
17-03-18 01:14:04.290 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136287519183411. ----------
17-03-18 01:14:04.290 -07 000000610 INF: Cycle	84	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:14:04.290 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28264, sync = True, waitForSettling = True)
17-03-18 01:14:04.290 -07 000000610 INF: Z Motor: Moving to -0.129384 mm, started at -0.136288 mm, distance = 6.90 um
17-03-18 01:14:04.310 -07 000000610 INF: FPGA: Xmit ZDACW 28264\n [Z Motor]
17-03-18 01:14:04.310 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:14:04.320 -07 000000610 INF: FPGA: 'ZDACW 28264' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 01:14:04.320 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:04.320 -07 000000591 INF: FPGA: Recv ZDACR 28264
17-03-18 01:14:04.330 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:04.330 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:14:04.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:04.480 -07 000000592 INF: FPGA: Recv ZSGSRD 29432
17-03-18 01:14:04.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:04.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:04.490 -07 000000592 INF: FPGA: Recv ZSGSRD 29434
17-03-18 01:14:04.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:04.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:04.500 -07 000000592 INF: FPGA: Recv ZSGSRD 29426
17-03-18 01:14:04.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:04.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:04.510 -07 000000592 INF: FPGA: Recv ZSGSRD 29428
17-03-18 01:14:04.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:04.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:04.520 -07 000000592 INF: FPGA: Recv ZSGSRD 29430
17-03-18 01:14:04.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:04.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:04.530 -07 000000591 INF: FPGA: Recv ZSGSRD 29431
17-03-18 01:14:04.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:04.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:04.540 -07 000000591 INF: FPGA: Recv ZSGSRD 29428
17-03-18 01:14:04.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:04.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:04.550 -07 000000591 INF: FPGA: Recv ZSGSRD 29431
17-03-18 01:14:04.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:04.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:04.560 -07 000000591 INF: FPGA: Recv ZSGSRD 29432
17-03-18 01:14:04.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:04.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:04.570 -07 000000444 INF: FPGA: Recv ZSGSRD 29433
17-03-18 01:14:04.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:04.590 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:04.590 -07 000000461 INF: FPGA: Recv ZPIEZORD 24832
17-03-18 01:14:04.600 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:14:04.600 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.313 V. Piezo Error = -10.1 V.
17-03-18 01:14:04.600 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29430 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29431 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29426 (-128.6 uncal um), Max = 29434 (-128.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:14:04.600 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29430, posNoise = 4, negNoise = 4
17-03-18 01:14:04.600 -07 000000610 INF: Z Motor: After move to -0.129384, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:04.600 -07 000000610 INF: Z Motor: MoveAbsStepped took 302 ms)
17-03-18 01:14:04.600 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:04.600 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:04.600 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:04.600 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:04.600 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:14:04.600 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:14:04.600 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:14:04.600 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:04.600 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:14:04.600 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:14:04.600 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:14:04.600 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:14:04.610 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:14:04.610 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:14:04.610 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:14:04.610 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:14:04.620 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:14:04.620 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:14:04.620 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 01:14:04.630 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:14:04.640 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28441 150\n [Camera]
17-03-18 01:14:04.830 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:14:05.230 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:14:05.230 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:14:05.230 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:05.230 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:14:05.230 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:05.230 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:14:05.230 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2590502728, 0x0, 391868352) start.
17-03-18 01:14:05.230 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:05.230 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:05.230 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:14:05.420 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28441 775
17-03-18 01:14:05.570 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:14:05.620 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 01:14:05.620 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:14:05.620 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:05.630 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2590502728, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:14:05.630 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:05.630 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:14:05.630 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:05.630 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:05.630 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:14:05.630 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:14:05.760 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:14:05.760 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:14:05.760 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:05.870 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:14:05.870 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:14:05.870 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:05.870 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:05.870 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:05.870 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:14:05.880 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:14:05.950 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:14:05.950 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:14:05.950 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28441 150' command took 2 ms to send, 1302 ms to get response, and 1321 ms overall
17-03-18 01:14:05.950 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:14:05.950 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.12938791534316. ------
17-03-18 01:14:05.950 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:05.950 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13597 mm
17-03-18 01:14:05.950 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:14:05.960 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:05.960 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:14:05.960 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29702, sync = True, waitForSettling = False)
17-03-18 01:14:05.960 -07 000000590 INF: Z Motor: Moving to -0.135967 mm, started at -0.129388 mm, distance = -6.58 um
17-03-18 01:14:05.960 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:14:05.960 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:14:05.960 -07 000000592 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 01:14:05.970 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:05.970 -07 000000480 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:14:05.980 -07 000000590 INF: FPGA: Xmit ZDACW 29702\n [Z Motor]
17-03-18 01:14:05.980 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:14:05.980 -07 000000592 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:05.980 -07 000000592 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:14:05.980 -07 000000592 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:14:05.980 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 01:14:05.990 -07 000000590 INF: FPGA: 'ZDACW 29702' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:14:05.990 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:14:06.000 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:06.000 -07 000000591 INF: FPGA: Recv ZDACR 29702
17-03-18 01:14:06.010 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:14:06.010 -07 000000590 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 01:14:06.160 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:14:06.160 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:14:06.280 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:14:06.280 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:14:06.280 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:06.280 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:14:06.280 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:14:06.280 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:06.280 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:06.280 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 01:14:06.280 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:06.290 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 01:14:06.360 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 01:14:06.360 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 01:14:06.410 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:06.410 -07 000000487 INF: FPGA: Recv YRDPOS 141367
17-03-18 01:14:06.420 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:06.420 -07 000000592 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:06.420 -07 000000592 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 01:14:06.420 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec
17-03-18 01:14:07.240 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:14:07.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:14:07.370 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:07.370 -07 000000430 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:14:07.380 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:07.380 -07 000000592 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:07.400 -07 000000592 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:14:07.400 -07 000000592 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:14:07.400 -07 000000592 INF: Y Motor: Moved to 69.0273 after 1444 ms (table move)
17-03-18 01:14:07.410 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135967 mm (DAC = 29702)
17-03-18 01:14:07.410 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:07.410 -07 000000455 INF: FPGA: Recv ZSGSRD 30460
17-03-18 01:14:07.420 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:14:07.420 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:07.420 -07 000000585 INF: FPGA: Recv ZSGSRD 30460
17-03-18 01:14:07.430 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:07.430 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:07.430 -07 000000444 INF: FPGA: Recv ZSGSRD 30459
17-03-18 01:14:07.440 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:07.440 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:07.440 -07 000000461 INF: FPGA: Recv ZSGSRD 30458
17-03-18 01:14:07.450 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:07.450 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:07.450 -07 000000462 INF: FPGA: Recv ZSGSRD 30458
17-03-18 01:14:07.460 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:07.460 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:07.460 -07 000000461 INF: FPGA: Recv ZSGSRD 30456
17-03-18 01:14:07.470 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:07.470 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:07.470 -07 000000455 INF: FPGA: Recv ZSGSRD 30459
17-03-18 01:14:07.480 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:07.480 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:07.480 -07 000000461 INF: FPGA: Recv ZSGSRD 30450
17-03-18 01:14:07.490 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:07.490 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:07.490 -07 000000585 INF: FPGA: Recv ZSGSRD 30454
17-03-18 01:14:07.500 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:07.500 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:07.500 -07 000000461 INF: FPGA: Recv ZSGSRD 30455
17-03-18 01:14:07.510 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:07.510 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:07.510 -07 000000455 INF: FPGA: Recv ZPIEZORD 26193
17-03-18 01:14:07.520 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:07.520 -07 000000581 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.532 V. Piezo Error = -9.4 V.
17-03-18 01:14:07.520 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30457 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30458 (-135.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30450 (-135.1 uncal um), Max = 30460 (-135.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:14:07.520 -07 000000581 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30457, posNoise = 3, negNoise = 7
17-03-18 01:14:07.520 -07 000000581 INF: Z Motor: After move to -0.135967, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:07.520 -07 000000581 INF: Z Motor: Settle wait time = 1450 ms, measure time = 107 ms (allowed 150 ms), total time = 1557 ms
17-03-18 01:14:07.520 -07 000000581 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:14:07.570 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 01:14:07.570 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:14:07.570 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:07.570 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:07.570 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:07.570 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:07.570 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:14:07.570 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:07.570 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:14:07.570 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:14:07.580 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:14:07.580 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:14:07.590 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:14:07.590 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:14:07.590 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:14:07.640 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:14:07.930 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:14:07.930 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:14:07.940 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:14:07.940 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 01:14:07.970 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:14:07.970 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 01:14:07.970 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:14:08.060 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:14:08.060 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:08.060 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:14:08.060 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:14:08.080 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:08.080 -07 000000585 INF: Autofocus start
17-03-18 01:14:08.080 -07 000000585 INF: MeasureProfile start
17-03-18 01:14:08.080 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:08.090 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:14:08.090 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:14:08.100 -07 000000585 INF: MeasureProfile done
17-03-18 01:14:08.100 -07 000000585 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:14:08.100 -07 000000585 INF: Autofocus finished
17-03-18 01:14:08.290 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:14:08.290 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:14:08.290 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.135985581212748. ----------
17-03-18 01:14:08.290 -07 000000610 INF: Cycle	84	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:14:08.300 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28226, sync = True, waitForSettling = True)
17-03-18 01:14:08.300 -07 000000610 INF: Z Motor: Moving to -0.129210 mm, started at -0.135986 mm, distance = 6.78 um
17-03-18 01:14:08.300 -07 000000610 INF: FPGA: Xmit ZDACW 28226\n [Z Motor]
17-03-18 01:14:08.300 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:14:08.310 -07 000000610 INF: FPGA: 'ZDACW 28226' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:14:08.310 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:08.310 -07 000000462 INF: FPGA: Recv ZDACR 28226
17-03-18 01:14:08.320 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:08.320 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:14:08.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:08.470 -07 000000591 INF: FPGA: Recv ZSGSRD 29408
17-03-18 01:14:08.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:08.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:08.480 -07 000000461 INF: FPGA: Recv ZSGSRD 29405
17-03-18 01:14:08.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:08.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:08.490 -07 000000581 INF: FPGA: Recv ZSGSRD 29404
17-03-18 01:14:08.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:08.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:08.500 -07 000000585 INF: FPGA: Recv ZSGSRD 29406
17-03-18 01:14:08.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:08.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:08.510 -07 000000455 INF: FPGA: Recv ZSGSRD 29405
17-03-18 01:14:08.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:08.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:08.520 -07 000000461 INF: FPGA: Recv ZSGSRD 29408
17-03-18 01:14:08.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:08.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:08.530 -07 000000581 INF: FPGA: Recv ZSGSRD 29400
17-03-18 01:14:08.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:08.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:08.540 -07 000000461 INF: FPGA: Recv ZSGSRD 29403
17-03-18 01:14:08.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:08.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:08.550 -07 000000581 INF: FPGA: Recv ZSGSRD 29405
17-03-18 01:14:08.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:08.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:08.560 -07 000000591 INF: FPGA: Recv ZSGSRD 29404
17-03-18 01:14:08.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:08.570 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:08.570 -07 000000581 INF: FPGA: Recv ZPIEZORD 24795
17-03-18 01:14:08.580 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:08.580 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.307 V. Piezo Error = -10.1 V.
17-03-18 01:14:08.580 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29405 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29405 (-128.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29400 (-128.4 uncal um), Max = 29408 (-128.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:14:08.580 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29405, posNoise = 3, negNoise = 5
17-03-18 01:14:08.580 -07 000000610 INF: Z Motor: After move to -0.129210, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:08.580 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:14:08.580 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:08.580 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:08.580 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:08.580 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:08.580 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:14:08.580 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:14:08.580 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:14:08.580 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:08.580 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:14:08.580 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:14:08.580 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:14:08.580 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:14:08.590 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:14:08.590 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:14:08.590 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:14:08.590 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:14:08.600 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 01:14:08.610 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:14:08.610 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 01:14:08.610 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 01:14:08.610 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28403 150\n [Camera]
17-03-18 01:14:08.810 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:14:09.200 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:14:09.200 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:14:09.200 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:09.200 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:14:09.200 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:14:09.200 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:09.200 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:09.200 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2590502728, 0x0, 391868352) start.
17-03-18 01:14:09.200 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:09.200 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:14:09.460 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28403 775
17-03-18 01:14:09.540 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:14:09.590 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 01:14:09.590 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 01:14:09.590 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:09.590 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2590502728, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 01:14:09.590 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 01:14:09.590 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:09.590 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:09.590 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:09.590 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:14:09.600 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:14:09.630 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.994908,
17-03-18 01:14:09.730 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:14:09.730 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:14:09.730 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:09.730 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:14:09.730 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:14:09.730 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:09.740 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:09.740 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:14:09.740 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:09.740 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:14:09.920 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:14:09.920 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:14:09.920 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28403 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-18 01:14:09.920 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:14:09.920 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129227310039616. ------
17-03-18 01:14:09.930 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:09.930 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13555 mm
17-03-18 01:14:09.930 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:14:09.930 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:09.930 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:14:09.930 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29612, sync = True, waitForSettling = False)
17-03-18 01:14:09.930 -07 000000592 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 01:14:09.930 -07 000000444 INF: Z Motor: Moving to -0.135555 mm, started at -0.129227 mm, distance = -6.33 um
17-03-18 01:14:09.940 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:09.940 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:09.940 -07 000000455 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:14:09.950 -07 000000444 INF: FPGA: Xmit ZDACW 29612\n [Z Motor]
17-03-18 01:14:09.950 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:14:09.950 -07 000000592 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:09.950 -07 000000592 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:14:09.950 -07 000000592 INF: Y Motor: Moving 1352 steps-32
17-03-18 01:14:09.950 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 01:14:09.960 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:14:09.960 -07 000000444 INF: FPGA: 'ZDACW 29612' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:14:09.980 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:14:09.990 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:09.990 -07 000000585 INF: FPGA: Recv ZDACR 29612
17-03-18 01:14:10.000 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 01:14:10.000 -07 000000444 INF: Z Motor: MoveAbsStepped took 64 ms (did NOT wait for settling yet))
17-03-18 01:14:10.130 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:14:10.130 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:14:10.130 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:10.140 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:14:10.140 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:14:10.140 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:10.140 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:10.140 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:10.140 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 01:14:10.150 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:14:10.160 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:14:10.160 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:14:10.360 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:14:10.360 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 411 ms overall
17-03-18 01:14:10.400 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:10.400 -07 000000455 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:14:10.410 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:14:10.410 -07 000000592 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:10.410 -07 000000592 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:14:10.410 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 411 ms, distance = 0.845 mm, average velocity = 2.057 mm/sec
17-03-18 01:14:11.360 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:11.360 -07 000000447 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:14:11.370 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:11.370 -07 000000592 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:11.390 -07 000000592 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:14:11.390 -07 000000592 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:14:11.390 -07 000000592 INF: Y Motor: Moved to 69.8633 after 1461 ms (table move)
17-03-18 01:14:11.400 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135555 mm (DAC = 29612)
17-03-18 01:14:11.400 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:11.400 -07 000000579 INF: FPGA: Recv ZSGSRD 30396
17-03-18 01:14:11.410 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:11.410 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:11.410 -07 000000581 INF: FPGA: Recv ZSGSRD 30393
17-03-18 01:14:11.420 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:11.420 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:11.420 -07 000000444 INF: FPGA: Recv ZSGSRD 30396
17-03-18 01:14:11.430 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:11.430 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:11.430 -07 000000462 INF: FPGA: Recv ZSGSRD 30396
17-03-18 01:14:11.440 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:11.440 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:11.440 -07 000000455 INF: FPGA: Recv ZSGSRD 30391
17-03-18 01:14:11.450 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:11.450 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:11.450 -07 000000581 INF: FPGA: Recv ZSGSRD 30393
17-03-18 01:14:11.460 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:11.460 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:11.460 -07 000000444 INF: FPGA: Recv ZSGSRD 30391
17-03-18 01:14:11.470 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:11.470 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:11.470 -07 000000462 INF: FPGA: Recv ZSGSRD 30387
17-03-18 01:14:11.480 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:11.480 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:11.480 -07 000000585 INF: FPGA: Recv ZSGSRD 30383
17-03-18 01:14:11.490 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:11.490 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:11.490 -07 000000581 INF: FPGA: Recv ZSGSRD 30389
17-03-18 01:14:11.500 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:11.500 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:11.500 -07 000000444 INF: FPGA: Recv ZPIEZORD 26112
17-03-18 01:14:11.510 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:11.510 -07 000000591 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.519 V. Piezo Error = -9.4 V.
17-03-18 01:14:11.510 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30392 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30392 (-134.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30383 (-134.7 uncal um), Max = 30396 (-134.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:14:11.510 -07 000000591 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30392, posNoise = 4, negNoise = 9
17-03-18 01:14:11.510 -07 000000591 INF: Z Motor: After move to -0.135555, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:11.510 -07 000000591 INF: Z Motor: Settle wait time = 1464 ms, measure time = 110 ms (allowed 150 ms), total time = 1574 ms
17-03-18 01:14:11.510 -07 000000591 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:14:11.550 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 01:14:11.550 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:14:11.550 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:11.550 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:11.550 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:11.550 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:11.550 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:14:11.550 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:11.550 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:14:11.550 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:14:11.560 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:14:11.560 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:14:11.570 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:14:11.570 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:14:11.570 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:14:11.620 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:14:11.920 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:14:11.920 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:14:11.920 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:14:11.920 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 01:14:11.960 -07 000000579 INF: FPGA: Recv @CAMSNAP 383
17-03-18 01:14:11.960 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 01:14:11.960 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 387 ms overall
17-03-18 01:14:12.040 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 01:14:12.040 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:12.040 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:14:12.040 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 01:14:12.060 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:12.060 -07 000000576 INF: Autofocus start
17-03-18 01:14:12.060 -07 000000576 INF: MeasureProfile start
17-03-18 01:14:12.060 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:12.070 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:14:12.070 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:14:12.070 -07 000000576 INF: MeasureProfile done
17-03-18 01:14:12.070 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:14:12.070 -07 000000576 INF: Autofocus finished
17-03-18 01:14:12.240 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:14:12.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:14:12.270 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:14:12.270 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:14:12.270 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.135568007423534. ----------
17-03-18 01:14:12.270 -07 000000610 INF: Cycle	84	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:14:12.280 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28136, sync = True, waitForSettling = True)
17-03-18 01:14:12.280 -07 000000610 INF: Z Motor: Moving to -0.128798 mm, started at -0.135568 mm, distance = 6.77 um
17-03-18 01:14:12.280 -07 000000610 INF: FPGA: Xmit ZDACW 28136\n [Z Motor]
17-03-18 01:14:12.280 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:14:12.290 -07 000000610 INF: FPGA: 'ZDACW 28136' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:12.290 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:12.290 -07 000000576 INF: FPGA: Recv ZDACR 28136
17-03-18 01:14:12.300 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:12.300 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:14:12.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:12.450 -07 000000581 INF: FPGA: Recv ZSGSRD 29337
17-03-18 01:14:12.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:12.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:12.460 -07 000000576 INF: FPGA: Recv ZSGSRD 29339
17-03-18 01:14:12.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:12.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:12.470 -07 000000455 INF: FPGA: Recv ZSGSRD 29344
17-03-18 01:14:12.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:14:12.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:12.480 -07 000000585 INF: FPGA: Recv ZSGSRD 29337
17-03-18 01:14:12.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:12.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:12.490 -07 000000430 INF: FPGA: Recv ZSGSRD 29337
17-03-18 01:14:12.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:12.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:12.500 -07 000000455 INF: FPGA: Recv ZSGSRD 29339
17-03-18 01:14:12.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:12.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:12.510 -07 000000585 INF: FPGA: Recv ZSGSRD 29344
17-03-18 01:14:12.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:12.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:12.520 -07 000000581 INF: FPGA: Recv ZSGSRD 29340
17-03-18 01:14:12.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:12.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:12.530 -07 000000576 INF: FPGA: Recv ZSGSRD 29336
17-03-18 01:14:12.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:12.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:12.540 -07 000000430 INF: FPGA: Recv ZSGSRD 29335
17-03-18 01:14:12.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:12.550 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:12.550 -07 000000576 INF: FPGA: Recv ZPIEZORD 24739
17-03-18 01:14:12.560 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:12.560 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.293 V. Piezo Error = -10.1 V.
17-03-18 01:14:12.560 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29339 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29338 (-128.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29335 (-128.0 uncal um), Max = 29344 (-128.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:14:12.560 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29339, posNoise = 5, negNoise = 4
17-03-18 01:14:12.560 -07 000000610 INF: Z Motor: After move to -0.128798, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:12.560 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:14:12.560 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:12.560 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:12.560 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:12.560 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:12.560 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:14:12.560 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:12.560 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:14:12.560 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:14:12.560 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:14:12.560 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:14:12.560 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:14:12.560 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:14:12.560 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:14:12.560 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:14:12.560 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:14:12.570 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:14:12.570 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:14:12.570 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:14:12.580 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:14:12.580 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:14:12.580 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28313 150\n [Camera]
17-03-18 01:14:12.780 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:14:13.170 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:14:13.170 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:14:13.170 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:13.170 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:13.170 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:14:13.170 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:14:13.170 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:14:13.170 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:13.170 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:13.170 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 01:14:13.360 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28313 775
17-03-18 01:14:13.510 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:14:13.570 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:14:13.570 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:14:13.570 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:13.570 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:13.570 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:14:13.570 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:14:13.570 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:14:13.570 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:13.580 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:13.580 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:14:13.700 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:14:13.700 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:14:13.700 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:13.700 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:14:13.700 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:13.700 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:14:13.700 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:14:13.710 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:13.710 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:13.710 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 01:14:13.890 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:14:13.890 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:14:13.890 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28313 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-18 01:14:13.900 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:14:13.900 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.12880331203826. ------
17-03-18 01:14:13.900 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:13.900 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13490 mm
17-03-18 01:14:13.900 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:14:13.900 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:13.900 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:14:13.900 -07 000000585 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 01:14:13.900 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29470, sync = True, waitForSettling = False)
17-03-18 01:14:13.900 -07 000000455 INF: Z Motor: Moving to -0.134905 mm, started at -0.128803 mm, distance = -6.10 um
17-03-18 01:14:13.910 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:14:13.910 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:13.910 -07 000000576 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:14:13.920 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:13.920 -07 000000455 INF: FPGA: Xmit ZDACW 29470\n [Z Motor]
17-03-18 01:14:13.920 -07 000000585 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:13.920 -07 000000585 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:14:13.920 -07 000000585 INF: Y Motor: Moving 1343 steps-19
17-03-18 01:14:13.920 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:14:13.930 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:14:13.930 -07 000000455 INF: FPGA: 'ZDACW 29470' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 01:14:13.940 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:14:13.950 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:13.950 -07 000000487 INF: FPGA: Recv ZDACR 29470
17-03-18 01:14:13.960 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:14:13.960 -07 000000455 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 01:14:14.110 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:14:14.110 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:14:14.110 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:14.110 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 01:14:14.110 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:14:14.110 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:14.110 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:14.110 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 01:14:14.110 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:14.120 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:14:14.130 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:14:14.130 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:14:14.310 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 01:14:14.310 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:14:14.360 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:14.360 -07 000000430 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:14:14.370 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:14.370 -07 000000585 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:14.370 -07 000000585 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:14:14.370 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 01:14:15.000 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.012614,
17-03-18 01:14:15.320 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:15.320 -07 000000581 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:14:15.330 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:15.330 -07 000000585 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:15.350 -07 000000585 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:14:15.350 -07 000000585 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:14:15.350 -07 000000585 INF: Y Motor: Moved to 70.6885 after 1448 ms (table move)
17-03-18 01:14:15.360 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134905 mm (DAC = 29470)
17-03-18 01:14:15.380 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:15.380 -07 000000590 INF: FPGA: Recv ZSGSRD 30297
17-03-18 01:14:15.390 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 01:14:15.400 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:15.400 -07 000000579 INF: FPGA: Recv ZSGSRD 30288
17-03-18 01:14:15.410 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:14:15.410 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:15.410 -07 000000455 INF: FPGA: Recv ZSGSRD 30289
17-03-18 01:14:15.420 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:15.430 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:15.430 -07 000000581 INF: FPGA: Recv ZSGSRD 30290
17-03-18 01:14:15.440 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:14:15.440 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:15.440 -07 000000581 INF: FPGA: Recv ZSGSRD 30282
17-03-18 01:14:15.450 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:15.450 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:15.450 -07 000000581 INF: FPGA: Recv ZSGSRD 30289
17-03-18 01:14:15.460 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:15.460 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:15.460 -07 000000487 INF: FPGA: Recv ZSGSRD 30291
17-03-18 01:14:15.470 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:15.470 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:15.470 -07 000000487 INF: FPGA: Recv ZSGSRD 30289
17-03-18 01:14:15.480 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:15.480 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:15.480 -07 000000576 INF: FPGA: Recv ZSGSRD 30291
17-03-18 01:14:15.490 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:15.490 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:15.490 -07 000000606 INF: FPGA: Recv ZSGSRD 30291
17-03-18 01:14:15.500 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:15.500 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:15.500 -07 000000606 INF: FPGA: Recv ZPIEZORD 25967
17-03-18 01:14:15.510 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:15.510 -07 000000461 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -9.5 V.
17-03-18 01:14:15.510 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30290 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30290 (-134.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30282 (-134.1 uncal um), Max = 30297 (-134.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:14:15.510 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30290, posNoise = 7, negNoise = 8
17-03-18 01:14:15.510 -07 000000461 INF: Z Motor: After move to -0.134905, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:15.510 -07 000000461 INF: Z Motor: Settle wait time = 1453 ms, measure time = 148 ms (allowed 150 ms), total time = 1601 ms
17-03-18 01:14:15.510 -07 000000461 INF: Z Motor: Waiting extra 2 ms after reading position to reach expected total of 150 ms
17-03-18 01:14:15.520 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 01:14:15.520 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:14:15.520 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:15.520 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:15.520 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:15.520 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:15.520 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:14:15.520 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:15.520 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:14:15.520 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:14:15.530 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:14:15.530 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:14:15.540 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:14:15.540 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:14:15.540 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:14:15.590 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 01:14:15.890 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 01:14:15.890 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 01:14:15.890 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:14:15.890 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2642931184, 0x0, 559484976) start.
17-03-18 01:14:15.930 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:14:15.930 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:14:15.930 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:14:16.010 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2642931184, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:14:16.010 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:16.010 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:14:16.010 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 01:14:16.030 -07 000000606 INF: Autofocus start
17-03-18 01:14:16.030 -07 000000606 INF: MeasureProfile start
17-03-18 01:14:16.030 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:16.030 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:16.040 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:14:16.040 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:14:16.040 -07 000000606 INF: MeasureProfile done
17-03-18 01:14:16.040 -07 000000606 INF: X=80  Z correction [um]=0.3608828
17-03-18 01:14:16.040 -07 000000606 INF: Autofocus finished
17-03-18 01:14:16.240 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:14:16.240 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:14:16.240 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.134912737785074. ----------
17-03-18 01:14:16.240 -07 000000610 INF: Cycle	84	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:14:16.250 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28061, sync = True, waitForSettling = True)
17-03-18 01:14:16.250 -07 000000610 INF: Z Motor: Moving to -0.128455 mm, started at -0.134913 mm, distance = 6.46 um
17-03-18 01:14:16.250 -07 000000610 INF: FPGA: Xmit ZDACW 28061\n [Z Motor]
17-03-18 01:14:16.250 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:14:16.260 -07 000000610 INF: FPGA: 'ZDACW 28061' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:14:16.260 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:16.260 -07 000000487 INF: FPGA: Recv ZDACR 28061
17-03-18 01:14:16.270 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:16.270 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:14:16.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:16.420 -07 000000606 INF: FPGA: Recv ZSGSRD 29287
17-03-18 01:14:16.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:16.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:16.430 -07 000000461 INF: FPGA: Recv ZSGSRD 29289
17-03-18 01:14:16.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:16.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:16.440 -07 000000606 INF: FPGA: Recv ZSGSRD 29286
17-03-18 01:14:16.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:16.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:16.450 -07 000000606 INF: FPGA: Recv ZSGSRD 29285
17-03-18 01:14:16.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:16.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:16.460 -07 000000581 INF: FPGA: Recv ZSGSRD 29282
17-03-18 01:14:16.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:16.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:16.470 -07 000000581 INF: FPGA: Recv ZSGSRD 29286
17-03-18 01:14:16.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:16.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:16.480 -07 000000581 INF: FPGA: Recv ZSGSRD 29289
17-03-18 01:14:16.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:16.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:16.490 -07 000000581 INF: FPGA: Recv ZSGSRD 29291
17-03-18 01:14:16.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:16.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:16.500 -07 000000487 INF: FPGA: Recv ZSGSRD 29285
17-03-18 01:14:16.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:16.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:16.510 -07 000000487 INF: FPGA: Recv ZSGSRD 29288
17-03-18 01:14:16.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:16.520 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:16.520 -07 000000461 INF: FPGA: Recv ZPIEZORD 24683
17-03-18 01:14:16.530 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:16.530 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.282 V. Piezo Error = -10.1 V.
17-03-18 01:14:16.530 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29287 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29286 (-127.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29282 (-127.7 uncal um), Max = 29291 (-127.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:14:16.530 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29287, posNoise = 4, negNoise = 5
17-03-18 01:14:16.530 -07 000000610 INF: Z Motor: After move to -0.128455, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:16.530 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:14:16.530 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:16.530 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:16.530 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:16.530 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:16.530 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:14:16.530 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:16.530 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:14:16.530 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:14:16.530 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:14:16.530 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:14:16.530 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:14:16.530 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:14:16.540 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:14:16.540 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:14:16.540 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:14:16.540 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:14:16.550 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:14:16.550 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:14:16.550 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:14:16.550 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:14:16.550 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28238 150\n [Camera]
17-03-18 01:14:16.750 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:14:17.140 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:14:17.140 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:14:17.140 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:17.140 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:17.140 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 01:14:17.140 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:14:17.140 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:14:17.140 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:17.140 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:17.140 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:14:17.240 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:14:17.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:14:17.330 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28238 775
17-03-18 01:14:17.480 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:14:17.540 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:14:17.540 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:14:17.540 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:17.540 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:17.540 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:14:17.550 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 01:14:17.550 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:14:17.550 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:17.550 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:17.560 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:14:17.670 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:14:17.670 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:14:17.670 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:17.670 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:17.670 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:14:17.670 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:14:17.670 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:14:17.670 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:17.670 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:17.670 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:14:17.860 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:14:17.860 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:14:17.860 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28238 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-18 01:14:17.860 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:14:17.860 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128469253006888. ------
17-03-18 01:14:17.870 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:17.870 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13511 mm
17-03-18 01:14:17.870 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:14:17.870 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:14:17.870 -07 000000455 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 01:14:17.870 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29514, sync = True, waitForSettling = False)
17-03-18 01:14:17.870 -07 000000576 INF: Z Motor: Moving to -0.135106 mm, started at -0.128469 mm, distance = -6.64 um
17-03-18 01:14:17.880 -07 000000576 INF: FPGA: Xmit ZDACW 29514\n [Z Motor]
17-03-18 01:14:17.890 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:18.060 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:14:18.060 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:14:18.060 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:18.060 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:14:18.060 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:14:18.060 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:18.060 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:18.070 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:14:18.070 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:14:18.070 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:14:18.080 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:18.080 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:14:18.080 -07 000000590 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:14:18.080 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 187 ms to get response, and 212 ms overall
17-03-18 01:14:18.080 -07 000000455 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:18.080 -07 000000455 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:14:18.080 -07 000000455 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:14:18.080 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:14:18.080 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 207 ms to get response, and 215 ms overall
17-03-18 01:14:18.080 -07 000000576 INF: FPGA: 'ZDACW 29514' command took 0 ms to send, 197 ms to get response, and 209 ms overall
17-03-18 01:14:18.090 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:18.090 -07 000000590 INF: FPGA: Recv ZDACR 29514
17-03-18 01:14:18.100 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:18.100 -07 000000576 INF: Z Motor: MoveAbsStepped took 221 ms (did NOT wait for settling yet))
17-03-18 01:14:18.100 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:14:18.300 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:14:18.300 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 01:14:18.460 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 01:14:18.460 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 376 ms to get response, and 378 ms overall
17-03-18 01:14:18.510 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:18.510 -07 000000430 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:14:18.520 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:18.520 -07 000000455 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:18.520 -07 000000455 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:14:18.520 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.233 mm/sec
17-03-18 01:14:19.470 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:19.470 -07 000000430 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:14:19.480 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:19.480 -07 000000455 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:19.500 -07 000000455 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:14:19.500 -07 000000455 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:14:19.500 -07 000000455 INF: Y Motor: Moved to 71.5190 after 1631 ms (table move)
17-03-18 01:14:19.510 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135106 mm (DAC = 29514)
17-03-18 01:14:19.510 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:19.510 -07 000000590 INF: FPGA: Recv ZSGSRD 30326
17-03-18 01:14:19.520 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:19.520 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:19.520 -07 000000455 INF: FPGA: Recv ZSGSRD 30318
17-03-18 01:14:19.530 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:19.530 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:19.530 -07 000000590 INF: FPGA: Recv ZSGSRD 30311
17-03-18 01:14:19.540 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:19.540 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:19.540 -07 000000455 INF: FPGA: Recv ZSGSRD 30324
17-03-18 01:14:19.550 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:19.550 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:19.550 -07 000000579 INF: FPGA: Recv ZSGSRD 30324
17-03-18 01:14:19.560 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:19.560 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:19.560 -07 000000430 INF: FPGA: Recv ZSGSRD 30314
17-03-18 01:14:19.570 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:19.570 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:19.570 -07 000000590 INF: FPGA: Recv ZSGSRD 30327
17-03-18 01:14:19.580 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:19.580 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:19.580 -07 000000430 INF: FPGA: Recv ZSGSRD 30328
17-03-18 01:14:19.590 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:19.590 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:19.590 -07 000000455 INF: FPGA: Recv ZSGSRD 30322
17-03-18 01:14:19.600 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:19.600 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:19.600 -07 000000579 INF: FPGA: Recv ZSGSRD 30319
17-03-18 01:14:19.610 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:19.610 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:19.610 -07 000000455 INF: FPGA: Recv ZPIEZORD 26063
17-03-18 01:14:19.620 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:19.620 -07 000000585 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.504 V. Piezo Error = -9.4 V.
17-03-18 01:14:19.620 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30321 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30323 (-134.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30311 (-134.3 uncal um), Max = 30328 (-134.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:14:19.620 -07 000000585 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30321, posNoise = 7, negNoise = 10
17-03-18 01:14:19.620 -07 000000585 INF: Z Motor: After move to -0.135106, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:19.620 -07 000000585 INF: Z Motor: Settle wait time = 1631 ms, measure time = 111 ms (allowed 150 ms), total time = 1742 ms
17-03-18 01:14:19.620 -07 000000585 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:14:19.660 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1787 ms
17-03-18 01:14:19.660 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:14:19.660 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:19.660 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:19.660 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:19.660 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:19.660 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:14:19.660 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:19.660 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:14:19.660 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:14:19.670 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:14:19.670 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:14:19.680 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:14:19.680 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:14:19.680 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:14:19.730 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:14:20.030 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:14:20.030 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:14:20.030 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:14:20.030 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 01:14:20.070 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:14:20.070 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 01:14:20.070 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 386 ms overall
17-03-18 01:14:20.150 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 01:14:20.150 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:20.150 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:14:20.150 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 01:14:20.170 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:20.170 -07 000000430 INF: Autofocus start
17-03-18 01:14:20.170 -07 000000430 INF: MeasureProfile start
17-03-18 01:14:20.170 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:20.180 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:14:20.180 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:14:20.190 -07 000000430 INF: MeasureProfile done
17-03-18 01:14:20.190 -07 000000430 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:14:20.190 -07 000000430 INF: Autofocus finished
17-03-18 01:14:20.360 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.999021,
17-03-18 01:14:20.380 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:14:20.380 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:14:20.380 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135111888361469. ----------
17-03-18 01:14:20.380 -07 000000610 INF: Cycle	84	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:14:20.390 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28038, sync = True, waitForSettling = True)
17-03-18 01:14:20.390 -07 000000610 INF: Z Motor: Moving to -0.128350 mm, started at -0.135112 mm, distance = 6.76 um
17-03-18 01:14:20.400 -07 000000610 INF: FPGA: Xmit ZDACW 28038\n [Z Motor]
17-03-18 01:14:20.400 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:14:20.410 -07 000000610 INF: FPGA: 'ZDACW 28038' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:14:20.410 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:20.410 -07 000000576 INF: FPGA: Recv ZDACR 28038
17-03-18 01:14:20.420 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:20.420 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:14:20.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:20.570 -07 000000579 INF: FPGA: Recv ZSGSRD 29276
17-03-18 01:14:20.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:20.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:20.580 -07 000000576 INF: FPGA: Recv ZSGSRD 29263
17-03-18 01:14:20.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:20.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:20.590 -07 000000590 INF: FPGA: Recv ZSGSRD 29269
17-03-18 01:14:20.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:20.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:20.600 -07 000000579 INF: FPGA: Recv ZSGSRD 29271
17-03-18 01:14:20.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:20.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:20.610 -07 000000455 INF: FPGA: Recv ZSGSRD 29267
17-03-18 01:14:20.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:20.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:20.620 -07 000000592 INF: FPGA: Recv ZSGSRD 29275
17-03-18 01:14:20.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:20.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:20.630 -07 000000590 INF: FPGA: Recv ZSGSRD 29266
17-03-18 01:14:20.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:20.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:20.640 -07 000000579 INF: FPGA: Recv ZSGSRD 29269
17-03-18 01:14:20.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:20.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:20.650 -07 000000430 INF: FPGA: Recv ZSGSRD 29267
17-03-18 01:14:20.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:20.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:20.660 -07 000000455 INF: FPGA: Recv ZSGSRD 29268
17-03-18 01:14:20.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:20.670 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:20.670 -07 000000590 INF: FPGA: Recv ZPIEZORD 24692
17-03-18 01:14:20.680 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:20.680 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.278 V. Piezo Error = -10.0 V.
17-03-18 01:14:20.680 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29269 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29268 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29263 (-127.5 uncal um), Max = 29276 (-127.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:14:20.680 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29269, posNoise = 7, negNoise = 6
17-03-18 01:14:20.680 -07 000000610 INF: Z Motor: After move to -0.128350, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:20.680 -07 000000610 INF: Z Motor: MoveAbsStepped took 292 ms)
17-03-18 01:14:20.680 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:20.680 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:20.680 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:20.680 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:20.680 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:14:20.680 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:20.680 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:14:20.680 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:14:20.680 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:14:20.680 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:14:20.680 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:14:20.680 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:14:20.690 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:14:20.690 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:14:20.690 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:14:20.690 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:14:20.700 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:14:20.700 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:14:20.700 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:14:20.700 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:14:20.700 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28215 150\n [Camera]
17-03-18 01:14:20.900 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:14:21.290 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:14:21.290 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:14:21.290 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:21.290 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:21.290 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:14:21.290 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:14:21.290 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:14:21.290 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:21.290 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:21.290 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 01:14:21.480 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28215 775
17-03-18 01:14:21.630 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:14:21.690 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:14:21.690 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:14:21.690 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:21.690 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:14:21.690 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:14:21.690 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:21.700 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:21.700 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:14:21.700 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:21.700 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:14:21.820 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:14:21.820 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:14:21.820 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:21.820 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:21.820 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 01:14:21.820 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:14:21.820 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:14:21.830 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:21.830 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:21.830 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:14:22.010 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:14:22.010 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:14:22.010 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28215 150' command took 4 ms to send, 1308 ms to get response, and 1313 ms overall
17-03-18 01:14:22.020 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:14:22.020 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128353617188336. ------
17-03-18 01:14:22.020 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:22.020 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13476 mm
17-03-18 01:14:22.020 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:14:22.020 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:14:22.020 -07 000000576 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 01:14:22.020 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29439, sync = True, waitForSettling = False)
17-03-18 01:14:22.020 -07 000000444 INF: Z Motor: Moving to -0.134763 mm, started at -0.128354 mm, distance = -6.41 um
17-03-18 01:14:22.030 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:22.040 -07 000000444 INF: FPGA: Xmit ZDACW 29439\n [Z Motor]
17-03-18 01:14:22.220 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:14:22.220 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:14:22.220 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:22.220 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:14:22.220 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:14:22.220 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:22.230 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:22.230 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:14:22.230 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:14:22.230 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:14:22.240 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:22.240 -07 000000462 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:14:22.240 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:14:22.240 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:14:22.240 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 206 ms to get response, and 216 ms overall
17-03-18 01:14:22.240 -07 000000576 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:22.240 -07 000000576 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:14:22.240 -07 000000576 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:14:22.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:14:22.240 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:14:22.240 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 216 ms to get response, and 219 ms overall
17-03-18 01:14:22.240 -07 000000444 INF: FPGA: 'ZDACW 29439' command took 0 ms to send, 195 ms to get response, and 216 ms overall
17-03-18 01:14:22.250 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:22.250 -07 000000462 INF: FPGA: Recv ZDACR 29439
17-03-18 01:14:22.260 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:14:22.260 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:14:22.260 -07 000000444 INF: Z Motor: MoveAbsStepped took 230 ms (did NOT wait for settling yet))
17-03-18 01:14:22.460 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:14:22.460 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 217 ms overall
17-03-18 01:14:22.620 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:14:22.620 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 378 ms overall
17-03-18 01:14:22.660 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:22.670 -07 000000592 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:14:22.670 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:14:22.670 -07 000000576 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:22.670 -07 000000576 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 01:14:22.670 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.232 mm/sec
17-03-18 01:14:23.620 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:23.620 -07 000000444 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:14:23.630 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:23.630 -07 000000576 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:23.650 -07 000000576 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:14:23.650 -07 000000576 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:14:23.650 -07 000000576 INF: Y Motor: Moved to 72.3496 after 1628 ms (table move)
17-03-18 01:14:23.660 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134763 mm (DAC = 29439)
17-03-18 01:14:23.660 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:23.660 -07 000000462 INF: FPGA: Recv ZSGSRD 30267
17-03-18 01:14:23.670 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:23.670 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:23.670 -07 000000592 INF: FPGA: Recv ZSGSRD 30271
17-03-18 01:14:23.680 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:23.680 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:23.680 -07 000000585 INF: FPGA: Recv ZSGSRD 30271
17-03-18 01:14:23.690 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:23.690 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:23.690 -07 000000592 INF: FPGA: Recv ZSGSRD 30266
17-03-18 01:14:23.700 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:23.700 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:23.700 -07 000000592 INF: FPGA: Recv ZSGSRD 30267
17-03-18 01:14:23.710 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:23.710 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:23.710 -07 000000592 INF: FPGA: Recv ZSGSRD 30265
17-03-18 01:14:23.720 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:23.720 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:23.720 -07 000000462 INF: FPGA: Recv ZSGSRD 30264
17-03-18 01:14:23.730 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:23.730 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:23.730 -07 000000444 INF: FPGA: Recv ZSGSRD 30266
17-03-18 01:14:23.740 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:23.740 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:23.740 -07 000000592 INF: FPGA: Recv ZSGSRD 30271
17-03-18 01:14:23.750 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:23.750 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:23.750 -07 000000444 INF: FPGA: Recv ZSGSRD 30269
17-03-18 01:14:23.760 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:23.760 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:23.760 -07 000000576 INF: FPGA: Recv ZPIEZORD 25993
17-03-18 01:14:23.770 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:23.770 -07 000000591 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.492 V. Piezo Error = -9.4 V.
17-03-18 01:14:23.770 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30268 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30267 (-134.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30264 (-134.0 uncal um), Max = 30271 (-134.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:14:23.770 -07 000000591 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30268, posNoise = 3, negNoise = 4
17-03-18 01:14:23.770 -07 000000591 INF: Z Motor: After move to -0.134763, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:23.770 -07 000000591 INF: Z Motor: Settle wait time = 1631 ms, measure time = 110 ms (allowed 150 ms), total time = 1741 ms
17-03-18 01:14:23.770 -07 000000591 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:14:23.810 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1783 ms
17-03-18 01:14:23.810 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:14:23.810 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:23.810 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:23.810 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:23.810 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:14:23.810 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:23.810 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:23.810 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:14:23.810 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:14:23.810 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:14:23.810 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:14:23.820 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:14:23.820 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:14:23.830 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:14:23.870 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:14:24.170 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:14:24.170 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:14:24.170 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:14:24.170 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 01:14:24.210 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:14:24.210 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 01:14:24.210 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:14:24.290 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:14:24.290 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:24.290 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:14:24.290 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 01:14:24.310 -07 000000585 INF: Autofocus start
17-03-18 01:14:24.310 -07 000000585 INF: MeasureProfile start
17-03-18 01:14:24.310 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:24.310 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:24.320 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:14:24.320 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:14:24.320 -07 000000585 INF: MeasureProfile done
17-03-18 01:14:24.320 -07 000000585 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:14:24.320 -07 000000585 INF: Autofocus finished
17-03-18 01:14:24.520 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:14:24.520 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:14:24.520 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.134771405117956. ----------
17-03-18 01:14:24.530 -07 000000610 INF: Cycle	84	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:14:24.530 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27946, sync = True, waitForSettling = True)
17-03-18 01:14:24.530 -07 000000610 INF: Z Motor: Moving to -0.127929 mm, started at -0.134771 mm, distance = 6.84 um
17-03-18 01:14:24.530 -07 000000610 INF: FPGA: Xmit ZDACW 27946\n [Z Motor]
17-03-18 01:14:24.530 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:14:24.540 -07 000000610 INF: FPGA: 'ZDACW 27946' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:14:24.540 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:24.540 -07 000000576 INF: FPGA: Recv ZDACR 27946
17-03-18 01:14:24.550 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:24.550 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:14:24.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:24.700 -07 000000576 INF: FPGA: Recv ZSGSRD 29209
17-03-18 01:14:24.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:24.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:24.710 -07 000000591 INF: FPGA: Recv ZSGSRD 29209
17-03-18 01:14:24.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:24.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:24.720 -07 000000592 INF: FPGA: Recv ZSGSRD 29199
17-03-18 01:14:24.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:24.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:24.730 -07 000000585 INF: FPGA: Recv ZSGSRD 29200
17-03-18 01:14:24.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:24.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:24.740 -07 000000444 INF: FPGA: Recv ZSGSRD 29209
17-03-18 01:14:24.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:24.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:24.750 -07 000000591 INF: FPGA: Recv ZSGSRD 29202
17-03-18 01:14:24.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:24.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:24.760 -07 000000576 INF: FPGA: Recv ZSGSRD 29197
17-03-18 01:14:24.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:24.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:24.770 -07 000000585 INF: FPGA: Recv ZSGSRD 29202
17-03-18 01:14:24.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:24.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:24.780 -07 000000576 INF: FPGA: Recv ZSGSRD 29203
17-03-18 01:14:24.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:24.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:24.790 -07 000000585 INF: FPGA: Recv ZSGSRD 29204
17-03-18 01:14:24.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:24.800 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:24.800 -07 000000444 INF: FPGA: Recv ZPIEZORD 24604
17-03-18 01:14:24.810 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:24.810 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.264 V. Piezo Error = -10.1 V.
17-03-18 01:14:24.810 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29203 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29202 (-127.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29197 (-127.1 uncal um), Max = 29209 (-127.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:14:24.810 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29203, posNoise = 6, negNoise = 6
17-03-18 01:14:24.810 -07 000000610 INF: Z Motor: After move to -0.127929, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:24.810 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:14:24.810 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:24.810 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:24.810 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:24.810 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:24.810 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:14:24.810 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:24.810 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:14:24.810 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:14:24.810 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:14:24.810 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:14:24.810 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:14:24.810 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:14:24.820 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:14:24.820 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:14:24.820 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:14:24.820 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:14:24.830 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:14:24.830 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:14:24.830 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:14:24.830 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:14:24.830 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28123 150\n [Camera]
17-03-18 01:14:25.030 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:14:25.420 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:14:25.430 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:14:25.430 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:25.430 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:25.430 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 01:14:25.430 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:14:25.430 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:14:25.430 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:25.430 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:25.430 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 01:14:25.620 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28123 775
17-03-18 01:14:25.720 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.003063,
17-03-18 01:14:25.770 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:14:25.830 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:14:25.830 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:14:25.830 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:25.830 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:14:25.830 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:14:25.830 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:25.830 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:25.830 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:14:25.830 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:25.840 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:14:25.960 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:14:25.960 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:14:25.960 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:25.960 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:25.960 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 01:14:25.960 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:14:25.960 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:14:25.960 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:26.100 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:26.100 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:14:26.150 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:14:26.150 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:14:26.150 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28123 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:14:26.150 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:14:26.150 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.12792961918698. ------
17-03-18 01:14:26.150 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:26.150 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13463 mm
17-03-18 01:14:26.150 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:14:26.160 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:14:26.160 -07 000000606 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 01:14:26.160 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29410, sync = True, waitForSettling = False)
17-03-18 01:14:26.160 -07 000000444 INF: Z Motor: Moving to -0.134630 mm, started at -0.127930 mm, distance = -6.70 um
17-03-18 01:14:26.160 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:26.160 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:14:26.160 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:26.160 -07 000000447 INF: FPGA: Recv YRDPOS 148173
17-03-18 01:14:26.170 -07 000000444 INF: FPGA: Xmit ZDACW 29410\n [Z Motor]
17-03-18 01:14:26.170 -07 000000606 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:26.170 -07 000000606 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:26.170 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 01:14:26.170 -07 000000606 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:14:26.170 -07 000000606 INF: Y Motor: Moving 1348 steps-27
17-03-18 01:14:26.180 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:14:26.180 -07 000000444 INF: FPGA: 'ZDACW 29410' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:14:26.190 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:14:26.200 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:26.370 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 01:14:26.370 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:14:26.370 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:26.370 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:14:26.370 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 01:14:26.380 -07 000000461 INF: FPGA: Recv ZDACR 29410
17-03-18 01:14:26.380 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:14:26.390 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 228 ms overall
17-03-18 01:14:26.390 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 179 ms to get response, and 209 ms overall
17-03-18 01:14:26.390 -07 000000444 INF: Z Motor: MoveAbsStepped took 229 ms (did NOT wait for settling yet))
17-03-18 01:14:26.490 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:14:26.490 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:14:26.490 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:26.500 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:26.500 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 540 ms.
17-03-18 01:14:26.560 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:14:26.560 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 01:14:26.610 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:26.610 -07 000000444 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:14:26.620 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:26.620 -07 000000606 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:26.620 -07 000000606 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 01:14:26.620 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.843 mm, average velocity = 2.162 mm/sec
17-03-18 01:14:27.240 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:14:27.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:14:27.570 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:27.570 -07 000000461 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:14:27.580 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:27.580 -07 000000606 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:27.600 -07 000000606 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:14:27.600 -07 000000606 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:14:27.600 -07 000000606 INF: Y Motor: Moved to 73.1763 after 1446 ms (table move)
17-03-18 01:14:27.610 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134630 mm (DAC = 29410)
17-03-18 01:14:27.610 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:27.610 -07 000000606 INF: FPGA: Recv ZSGSRD 30240
17-03-18 01:14:27.620 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:27.620 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:27.620 -07 000000461 INF: FPGA: Recv ZSGSRD 30252
17-03-18 01:14:27.630 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:27.630 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:27.630 -07 000000444 INF: FPGA: Recv ZSGSRD 30245
17-03-18 01:14:27.640 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:27.640 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:27.640 -07 000000606 INF: FPGA: Recv ZSGSRD 30250
17-03-18 01:14:27.650 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:27.650 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:27.650 -07 000000461 INF: FPGA: Recv ZSGSRD 30249
17-03-18 01:14:27.660 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:27.660 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:27.660 -07 000000444 INF: FPGA: Recv ZSGSRD 30245
17-03-18 01:14:27.670 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:27.670 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:27.670 -07 000000461 INF: FPGA: Recv ZSGSRD 30249
17-03-18 01:14:27.680 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:27.680 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:27.680 -07 000000461 INF: FPGA: Recv ZSGSRD 30239
17-03-18 01:14:27.690 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:27.690 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:27.690 -07 000000461 INF: FPGA: Recv ZSGSRD 30244
17-03-18 01:14:27.700 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:27.700 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:27.700 -07 000000461 INF: FPGA: Recv ZSGSRD 30249
17-03-18 01:14:27.710 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:27.710 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:27.710 -07 000000461 INF: FPGA: Recv ZPIEZORD 25993
17-03-18 01:14:27.720 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:27.720 -07 000000592 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.488 V. Piezo Error = -9.3 V.
17-03-18 01:14:27.720 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30246 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30247 (-133.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30239 (-133.8 uncal um), Max = 30252 (-133.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:14:27.720 -07 000000592 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30246, posNoise = 6, negNoise = 7
17-03-18 01:14:27.720 -07 000000592 INF: Z Motor: After move to -0.134630, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:27.720 -07 000000592 INF: Z Motor: Settle wait time = 1449 ms, measure time = 110 ms (allowed 150 ms), total time = 1559 ms
17-03-18 01:14:27.720 -07 000000592 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:14:27.760 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 01:14:27.760 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:14:27.760 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:27.760 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:27.760 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:27.760 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:14:27.760 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:27.760 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:27.760 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:14:27.760 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:14:27.770 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:14:27.770 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:14:27.780 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:14:27.780 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:14:27.780 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:14:27.830 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:14:28.130 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:14:28.130 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:14:28.130 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:14:28.130 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610472208, 0x0, 559484976) start.
17-03-18 01:14:28.170 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:14:28.170 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:14:28.170 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:14:28.250 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610472208, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 01:14:28.250 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:28.250 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:14:28.250 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 01:14:28.270 -07 000000592 INF: Autofocus start
17-03-18 01:14:28.270 -07 000000592 INF: MeasureProfile start
17-03-18 01:14:28.270 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:28.270 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:28.280 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:14:28.280 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:14:28.280 -07 000000592 INF: MeasureProfile done
17-03-18 01:14:28.280 -07 000000592 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 01:14:28.280 -07 000000592 INF: Autofocus finished
17-03-18 01:14:28.480 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:14:28.480 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:14:28.480 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134630072450837. ----------
17-03-18 01:14:28.480 -07 000000610 INF: Cycle	84	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:14:28.490 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27888, sync = True, waitForSettling = True)
17-03-18 01:14:28.490 -07 000000610 INF: Z Motor: Moving to -0.127663 mm, started at -0.134630 mm, distance = 6.97 um
17-03-18 01:14:28.490 -07 000000610 INF: FPGA: Xmit ZDACW 27888\n [Z Motor]
17-03-18 01:14:28.490 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 01:14:28.500 -07 000000610 INF: FPGA: 'ZDACW 27888' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:14:28.500 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:28.500 -07 000000444 INF: FPGA: Recv ZDACR 27888
17-03-18 01:14:28.510 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:28.510 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:14:28.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:28.660 -07 000000585 INF: FPGA: Recv ZSGSRD 29165
17-03-18 01:14:28.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:28.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:28.670 -07 000000437 INF: FPGA: Recv ZSGSRD 29166
17-03-18 01:14:28.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:28.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:28.680 -07 000000461 INF: FPGA: Recv ZSGSRD 29164
17-03-18 01:14:28.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:28.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:28.690 -07 000000444 INF: FPGA: Recv ZSGSRD 29160
17-03-18 01:14:28.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:28.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:28.700 -07 000000606 INF: FPGA: Recv ZSGSRD 29156
17-03-18 01:14:28.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:28.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:28.710 -07 000000585 INF: FPGA: Recv ZSGSRD 29167
17-03-18 01:14:28.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:28.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:28.720 -07 000000461 INF: FPGA: Recv ZSGSRD 29164
17-03-18 01:14:28.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:28.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:28.730 -07 000000585 INF: FPGA: Recv ZSGSRD 29163
17-03-18 01:14:28.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:28.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:28.740 -07 000000437 INF: FPGA: Recv ZSGSRD 29163
17-03-18 01:14:28.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:28.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:28.750 -07 000000444 INF: FPGA: Recv ZSGSRD 29162
17-03-18 01:14:28.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:28.760 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:28.760 -07 000000461 INF: FPGA: Recv ZPIEZORD 24571
17-03-18 01:14:28.770 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:28.770 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.255 V. Piezo Error = -10.1 V.
17-03-18 01:14:28.770 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29163 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29164 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29156 (-126.9 uncal um), Max = 29167 (-126.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:14:28.770 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29163, posNoise = 4, negNoise = 7
17-03-18 01:14:28.770 -07 000000610 INF: Z Motor: After move to -0.127663, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:28.770 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:14:28.770 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:28.770 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:28.770 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:28.770 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:28.770 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:14:28.770 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:28.770 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:14:28.770 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:14:28.770 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:14:28.770 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:14:28.770 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:14:28.770 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:14:28.780 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:14:28.780 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:14:28.780 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:14:28.780 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:14:28.790 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:14:28.790 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:14:28.790 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:14:28.790 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:14:28.790 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28065 150\n [Camera]
17-03-18 01:14:28.990 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 01:14:29.380 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:14:29.380 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:14:29.380 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:29.380 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:14:29.380 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:14:29.380 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:29.380 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:29.380 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:14:29.390 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:29.390 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2567016040, 0x0, 418435064) start.
17-03-18 01:14:29.570 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28065 775
17-03-18 01:14:29.720 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:14:29.780 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:14:29.780 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:14:29.780 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:29.780 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:29.780 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:14:29.780 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2567016040, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:14:29.780 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:14:29.780 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:29.790 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:29.790 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:14:29.910 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:14:29.910 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:14:29.910 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:29.910 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:14:29.910 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:14:29.910 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:30.030 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:30.030 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-18 01:14:30.030 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:30.040 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:14:30.100 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:14:30.100 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:14:30.100 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28065 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-18 01:14:30.100 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:14:30.100 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.12767265070131. ------
17-03-18 01:14:30.110 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:30.110 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13395 mm
17-03-18 01:14:30.110 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:14:30.110 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29262, sync = True, waitForSettling = False)
17-03-18 01:14:30.110 -07 000000455 INF: Z Motor: Moving to -0.133953 mm, started at -0.127673 mm, distance = -6.28 um
17-03-18 01:14:30.110 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:30.110 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:14:30.110 -07 000000461 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 01:14:30.120 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:14:30.120 -07 000000455 INF: FPGA: Xmit ZDACW 29262\n [Z Motor]
17-03-18 01:14:30.120 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:14:30.130 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:30.130 -07 000000455 INF: FPGA: 'ZDACW 29262' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:14:30.130 -07 000000444 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:14:30.140 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:14:30.140 -07 000000461 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:30.140 -07 000000461 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:14:30.140 -07 000000461 INF: Y Motor: Moving 1354 steps-33
17-03-18 01:14:30.140 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:14:30.150 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:30.150 -07 000000430 INF: FPGA: Recv ZDACR 29262
17-03-18 01:14:30.160 -07 000000455 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:14:30.160 -07 000000455 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 01:14:30.160 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:14:30.340 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:14:30.340 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 01:14:30.430 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:14:30.430 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:14:30.430 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:30.430 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:14:30.430 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:14:30.430 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:30.440 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:30.440 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-18 01:14:30.440 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:30.440 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-18 01:14:30.530 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:14:30.530 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:14:30.570 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:30.570 -07 000000480 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:14:30.580 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:14:30.580 -07 000000461 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:30.580 -07 000000461 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:14:30.580 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-18 01:14:31.080 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 3.994908,
17-03-18 01:14:31.530 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:31.530 -07 000000606 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:14:31.540 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:31.540 -07 000000461 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:31.550 -07 000000461 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:14:31.550 -07 000000461 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:14:31.560 -07 000000461 INF: Y Motor: Moved to 74.0083 after 1443 ms (table move)
17-03-18 01:14:31.560 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133953 mm (DAC = 29262)
17-03-18 01:14:31.560 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:31.560 -07 000000455 INF: FPGA: Recv ZSGSRD 30140
17-03-18 01:14:31.570 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:14:31.570 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:31.570 -07 000000590 INF: FPGA: Recv ZSGSRD 30136
17-03-18 01:14:31.580 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:31.580 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:31.580 -07 000000579 INF: FPGA: Recv ZSGSRD 30137
17-03-18 01:14:31.590 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:31.590 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:31.590 -07 000000579 INF: FPGA: Recv ZSGSRD 30139
17-03-18 01:14:31.600 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:31.600 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:31.600 -07 000000487 INF: FPGA: Recv ZSGSRD 30145
17-03-18 01:14:31.610 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:31.610 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:31.610 -07 000000455 INF: FPGA: Recv ZSGSRD 30142
17-03-18 01:14:31.620 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:31.620 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:31.620 -07 000000455 INF: FPGA: Recv ZSGSRD 30145
17-03-18 01:14:31.630 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:31.630 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:31.630 -07 000000590 INF: FPGA: Recv ZSGSRD 30143
17-03-18 01:14:31.640 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:31.640 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:31.640 -07 000000455 INF: FPGA: Recv ZSGSRD 30138
17-03-18 01:14:31.650 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:31.650 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:31.650 -07 000000444 INF: FPGA: Recv ZSGSRD 30137
17-03-18 01:14:31.660 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:31.660 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:31.660 -07 000000444 INF: FPGA: Recv ZPIEZORD 25880
17-03-18 01:14:31.670 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:31.670 -07 000000585 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.465 V. Piezo Error = -9.4 V.
17-03-18 01:14:31.670 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30140 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30140 (-133.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30136 (-133.1 uncal um), Max = 30145 (-133.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:14:31.670 -07 000000585 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30140, posNoise = 5, negNoise = 4
17-03-18 01:14:31.670 -07 000000585 INF: Z Motor: After move to -0.133953, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:31.670 -07 000000585 INF: Z Motor: Settle wait time = 1448 ms, measure time = 106 ms (allowed 150 ms), total time = 1554 ms
17-03-18 01:14:31.670 -07 000000585 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 01:14:31.720 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 01:14:31.720 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:14:31.720 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:31.720 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:31.720 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:31.720 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:31.720 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:14:31.720 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:31.720 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:14:31.720 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:14:31.730 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:14:31.730 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:14:31.740 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:14:31.740 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:14:31.740 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:14:31.790 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:14:32.080 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:14:32.080 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:14:32.090 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:14:32.090 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656805360, 0x0, 559484976) start.
17-03-18 01:14:32.120 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:14:32.120 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:14:32.120 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:14:32.200 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656805360, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:14:32.200 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:32.200 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:14:32.200 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 01:14:32.230 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:32.230 -07 000000585 INF: Autofocus start
17-03-18 01:14:32.230 -07 000000585 INF: MeasureProfile start
17-03-18 01:14:32.230 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:32.240 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:14:32.240 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:14:32.240 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:14:32.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:14:32.240 -07 000000585 INF: MeasureProfile done
17-03-18 01:14:32.240 -07 000000585 INF: X=32  Z correction [um]=0.1299841
17-03-18 01:14:32.240 -07 000000585 INF: Autofocus finished
17-03-18 01:14:32.440 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:14:32.440 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:14:32.440 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.13394910596381. ----------
17-03-18 01:14:32.440 -07 000000610 INF: Cycle	84	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:14:32.450 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27803, sync = True, waitForSettling = True)
17-03-18 01:14:32.450 -07 000000610 INF: Z Motor: Moving to -0.127274 mm, started at -0.133949 mm, distance = 6.68 um
17-03-18 01:14:32.450 -07 000000610 INF: FPGA: Xmit ZDACW 27803\n [Z Motor]
17-03-18 01:14:32.450 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 01:14:32.460 -07 000000610 INF: FPGA: 'ZDACW 27803' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:14:32.460 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:32.460 -07 000000455 INF: FPGA: Recv ZDACR 27803
17-03-18 01:14:32.470 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:32.470 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:14:32.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:32.620 -07 000000487 INF: FPGA: Recv ZSGSRD 29102
17-03-18 01:14:32.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:32.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:32.630 -07 000000579 INF: FPGA: Recv ZSGSRD 29102
17-03-18 01:14:32.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:32.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:32.640 -07 000000487 INF: FPGA: Recv ZSGSRD 29101
17-03-18 01:14:32.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:32.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:32.650 -07 000000579 INF: FPGA: Recv ZSGSRD 29104
17-03-18 01:14:32.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:32.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:32.660 -07 000000487 INF: FPGA: Recv ZSGSRD 29099
17-03-18 01:14:32.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:32.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:32.670 -07 000000455 INF: FPGA: Recv ZSGSRD 29106
17-03-18 01:14:32.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:32.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:32.680 -07 000000590 INF: FPGA: Recv ZSGSRD 29100
17-03-18 01:14:32.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:32.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:32.690 -07 000000455 INF: FPGA: Recv ZSGSRD 29100
17-03-18 01:14:32.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:32.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:32.700 -07 000000444 INF: FPGA: Recv ZSGSRD 29099
17-03-18 01:14:32.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:32.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:32.710 -07 000000579 INF: FPGA: Recv ZSGSRD 29099
17-03-18 01:14:32.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:32.720 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:32.720 -07 000000585 INF: FPGA: Recv ZPIEZORD 24524
17-03-18 01:14:32.730 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:32.730 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.242 V. Piezo Error = -10.0 V.
17-03-18 01:14:32.730 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29101 (-126.5 uncal um), Error = 0.8 uncal um, Median = 29100 (-126.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29099 (-126.5 uncal um), Max = 29106 (-126.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:14:32.730 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29101, posNoise = 5, negNoise = 2
17-03-18 01:14:32.730 -07 000000610 INF: Z Motor: After move to -0.127274, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:32.730 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:14:32.730 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:32.730 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:32.730 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:32.730 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:14:32.730 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:14:32.730 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:14:32.730 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:32.730 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:32.730 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:14:32.730 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:14:32.730 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:14:32.730 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:14:32.740 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:14:32.740 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:14:32.740 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:14:32.740 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:14:32.750 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:14:32.750 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:14:32.750 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:14:32.750 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:14:32.750 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27980 150\n [Camera]
17-03-18 01:14:32.950 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:14:33.340 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:14:33.340 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:14:33.340 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:33.340 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:14:33.340 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:14:33.350 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:33.350 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) start.
17-03-18 01:14:33.350 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:33.350 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:33.350 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:14:33.530 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27980 775
17-03-18 01:14:33.680 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:14:33.740 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:14:33.740 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:14:33.740 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:33.750 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:33.750 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:14:33.750 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:14:33.750 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:14:33.750 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:33.750 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:33.760 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:14:33.870 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:14:33.870 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:14:33.870 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:33.870 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:33.870 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:14:33.870 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:14:33.870 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:14:33.870 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:33.870 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:33.870 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 01:14:34.060 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:14:34.060 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:14:34.060 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27980 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-18 01:14:34.060 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:14:34.060 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127274349548521. ------
17-03-18 01:14:34.070 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:34.070 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13323 mm
17-03-18 01:14:34.070 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:14:34.070 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:34.070 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:14:34.070 -07 000000487 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 01:14:34.070 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29104, sync = True, waitForSettling = False)
17-03-18 01:14:34.070 -07 000000590 INF: Z Motor: Moving to -0.133230 mm, started at -0.127274 mm, distance = -5.96 um
17-03-18 01:14:34.080 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:14:34.080 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:34.080 -07 000000606 INF: FPGA: Recv YRDPOS 151570
17-03-18 01:14:34.090 -07 000000590 INF: FPGA: Xmit ZDACW 29104\n [Z Motor]
17-03-18 01:14:34.090 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:14:34.090 -07 000000487 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:34.090 -07 000000487 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:14:34.090 -07 000000487 INF: Y Motor: Moving 1350 steps-29
17-03-18 01:14:34.090 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 01:14:34.100 -07 000000590 INF: FPGA: 'ZDACW 29104' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:14:34.100 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:14:34.110 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:14:34.120 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:34.120 -07 000000606 INF: FPGA: Recv ZDACR 29104
17-03-18 01:14:34.130 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:14:34.130 -07 000000590 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 01:14:34.260 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 01:14:34.260 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:14:34.260 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:34.270 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:34.270 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:14:34.270 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:14:34.270 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:34.270 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:34.270 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:14:34.270 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:14:34.300 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:14:34.300 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:14:34.480 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 01:14:34.480 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 01:14:34.510 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:34.510 -07 000000591 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:14:34.520 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:14:34.520 -07 000000487 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:34.520 -07 000000487 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 01:14:34.520 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-18 01:14:35.470 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:35.470 -07 000000606 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:14:35.480 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:35.480 -07 000000487 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:35.490 -07 000000487 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:14:35.490 -07 000000487 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:14:35.490 -07 000000487 INF: Y Motor: Moved to 74.8320 after 1421 ms (table move)
17-03-18 01:14:35.500 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133230 mm (DAC = 29104)
17-03-18 01:14:35.500 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:35.500 -07 000000447 INF: FPGA: Recv ZSGSRD 30028
17-03-18 01:14:35.510 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:14:35.510 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:35.510 -07 000000461 INF: FPGA: Recv ZSGSRD 30034
17-03-18 01:14:35.520 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:35.520 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:35.520 -07 000000606 INF: FPGA: Recv ZSGSRD 30025
17-03-18 01:14:35.530 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:35.530 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:35.530 -07 000000480 INF: FPGA: Recv ZSGSRD 30026
17-03-18 01:14:35.540 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:35.540 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:35.540 -07 000000430 INF: FPGA: Recv ZSGSRD 30026
17-03-18 01:14:35.550 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:35.550 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:35.550 -07 000000591 INF: FPGA: Recv ZSGSRD 30030
17-03-18 01:14:35.560 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:35.560 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:35.560 -07 000000437 INF: FPGA: Recv ZSGSRD 30027
17-03-18 01:14:35.570 -07 000000581 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:35.570 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:35.570 -07 000000461 INF: FPGA: Recv ZSGSRD 30033
17-03-18 01:14:35.580 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:35.580 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:35.580 -07 000000592 INF: FPGA: Recv ZSGSRD 30031
17-03-18 01:14:35.590 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:35.590 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:35.590 -07 000000585 INF: FPGA: Recv ZSGSRD 30027
17-03-18 01:14:35.600 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:35.600 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:35.600 -07 000000430 INF: FPGA: Recv ZPIEZORD 25731
17-03-18 01:14:35.610 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:35.610 -07 000000581 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.4 V.
17-03-18 01:14:35.610 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30029 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30028 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30025 (-132.4 uncal um), Max = 30034 (-132.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:14:35.610 -07 000000581 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30029, posNoise = 5, negNoise = 4
17-03-18 01:14:35.610 -07 000000581 INF: Z Motor: After move to -0.133230, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:35.610 -07 000000581 INF: Z Motor: Settle wait time = 1425 ms, measure time = 108 ms (allowed 150 ms), total time = 1533 ms
17-03-18 01:14:35.610 -07 000000581 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:14:35.660 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-18 01:14:35.660 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:14:35.660 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:35.660 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:35.660 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:35.660 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:35.660 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:14:35.660 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:35.660 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:14:35.660 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:14:35.670 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 01:14:35.670 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:14:35.680 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:14:35.680 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:14:35.680 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:14:35.730 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:14:36.030 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:14:36.030 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:14:36.030 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:14:36.140 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:14:36.140 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 01:14:36.140 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 454 ms to get response, and 457 ms overall
17-03-18 01:14:36.140 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-18 01:14:36.260 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 01:14:36.260 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:36.260 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:14:36.260 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 236 ms.
17-03-18 01:14:36.340 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:14:36.340 -07 000000462 INF: Autofocus start
17-03-18 01:14:36.340 -07 000000462 INF: MeasureProfile start
17-03-18 01:14:36.340 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:14:36.350 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:14:36.350 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:14:36.350 -07 000000462 INF: MeasureProfile done
17-03-18 01:14:36.350 -07 000000462 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 01:14:36.350 -07 000000462 INF: Autofocus finished
17-03-18 01:14:36.460 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.019446,
17-03-18 01:14:36.550 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:14:36.550 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 203 ms overall
17-03-18 01:14:36.550 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133236018416075. ----------
17-03-18 01:14:36.550 -07 000000610 INF: Cycle	84	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:14:36.560 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27582, sync = True, waitForSettling = True)
17-03-18 01:14:36.560 -07 000000610 INF: Z Motor: Moving to -0.126262 mm, started at -0.133236 mm, distance = 6.97 um
17-03-18 01:14:36.560 -07 000000610 INF: FPGA: Xmit ZDACW 27582\n [Z Motor]
17-03-18 01:14:36.560 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:14:36.570 -07 000000610 INF: FPGA: 'ZDACW 27582' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:36.570 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:14:36.570 -07 000000480 INF: FPGA: Recv ZDACR 27582
17-03-18 01:14:36.580 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:36.580 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:14:36.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:36.730 -07 000000590 INF: FPGA: Recv ZSGSRD 28945
17-03-18 01:14:36.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:14:36.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:36.740 -07 000000487 INF: FPGA: Recv ZSGSRD 28946
17-03-18 01:14:36.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:36.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:36.750 -07 000000590 INF: FPGA: Recv ZSGSRD 28942
17-03-18 01:14:36.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:36.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:36.760 -07 000000487 INF: FPGA: Recv ZSGSRD 28943
17-03-18 01:14:36.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:36.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:36.770 -07 000000590 INF: FPGA: Recv ZSGSRD 28952
17-03-18 01:14:36.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:36.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:36.780 -07 000000461 INF: FPGA: Recv ZSGSRD 28943
17-03-18 01:14:36.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:36.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:36.790 -07 000000590 INF: FPGA: Recv ZSGSRD 28940
17-03-18 01:14:36.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:36.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:36.800 -07 000000461 INF: FPGA: Recv ZSGSRD 28942
17-03-18 01:14:36.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:36.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:36.810 -07 000000592 INF: FPGA: Recv ZSGSRD 28945
17-03-18 01:14:36.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:36.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:14:36.830 -07 000000461 INF: FPGA: Recv ZSGSRD 28945
17-03-18 01:14:36.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:14:36.850 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:14:36.850 -07 000000480 INF: FPGA: Recv ZPIEZORD 24352
17-03-18 01:14:36.860 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:14:36.860 -07 000000610 INF: Z Motor: Piezo is near 32.0 V (nominally 0 to 100 V), expect near 42.1 V, since DAC is at 4.209 V. Piezo Error = -10.1 V.
17-03-18 01:14:36.860 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.3 um, Read 10 ADC samples: Avg = 28944 (-125.5 uncal um), Error = 0.8 uncal um, Median = 28944 (-125.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 28940 (-125.5 uncal um), Max = 28952 (-125.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:14:36.860 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28944, posNoise = 8, negNoise = 4
17-03-18 01:14:36.860 -07 000000610 INF: Z Motor: After move to -0.126262, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:14:36.860 -07 000000610 INF: Z Motor: MoveAbsStepped took 300 ms)
17-03-18 01:14:36.860 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:14:36.860 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:14:36.860 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:14:36.860 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:14:36.860 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:14:36.860 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:14:36.860 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:14:36.860 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:14:36.860 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:14:36.860 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:14:36.860 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:14:36.860 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:14:36.870 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:14:36.870 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:14:36.870 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:14:36.870 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:14:36.870 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:14:36.870 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:14:36.880 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:14:36.880 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:14:36.890 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27759 150\n [Camera]
17-03-18 01:14:37.090 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:14:37.240 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:14:37.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 83. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:14:37.480 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:14:37.480 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:14:37.480 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:37.480 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:14:37.480 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:14:37.480 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:37.480 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:37.480 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-18 01:14:37.490 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:37.490 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:14:37.670 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27759 775
17-03-18 01:14:37.820 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:14:37.860 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 01:14:37.860 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 01:14:37.860 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:37.860 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:37.870 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 01:14:37.870 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:14:37.870 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:37.870 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:14:37.870 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:14:37.870 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:14:38.010 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:14:38.010 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:14:38.010 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:14:38.010 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:14:38.010 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:14:38.010 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:14:38.120 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:14:38.120 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-18 01:14:38.120 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:14:38.130 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) start.
17-03-18 01:14:38.200 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:14:38.200 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:14:38.200 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27759 150' command took 2 ms to send, 1304 ms to get response, and 1318 ms overall
17-03-18 01:14:38.530 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:14:38.530 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:14:38.530 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:38.530 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2567016040, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:14:38.530 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:14:38.530 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:14:38.530 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:38.530 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:14:38.530 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 01:14:38.530 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:14:38.540 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 526 ms.
17-03-18 01:14:38.570 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 01:14:38.570 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:14:38.620 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 01:14:38.630 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-18 01:14:38.630 -07 000000610 INF: Imaging Cycle 84: ScanTilesCommand Cycle 84 time end. Duration was 175195 ms.
17-03-18 01:14:38.630 -07 000000610 INF: =================== Cycle #84 ===================
17-03-18 01:14:38.630 -07 000000610 INF: ===================  ===================
17-03-18 01:14:38.630 -07 000000461 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:14:38.640 -07 000000585 INF: FPGA: Recv EXLED1ADCR 25
17-03-18 01:14:38.640 -07 000000461 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:14:38.640 -07 000000461 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-18 01:14:38.640 -07 000000461 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 84, FrontChillerTemperature: 4.019446, FrontChillerHeatSinkTemperature: 0.421278, AmbientTemperature: 18.58934, FlowCellCompartmentTemperature: 21.98965, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.32333, GreenLEDSensorTemperature: 26.79388, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-18 01:14:38.710 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.