17-03-18 01:14:38.760 -07 000000610 INF: =================== Cycle #85 ===================
17-03-18 01:14:38.760 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 01:14:38.760 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 01:14:38.760 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:38.770 -07 000000444 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:14:38.770 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-18 01:14:38.770 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:38.770 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 01:14:38.770 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 01:14:38.770 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 01:14:38.890 -07 000000592 INF: FPGA: Recv YMVTO 154378 878
17-03-18 01:14:38.890 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 111 ms to get response, and 117 ms overall
17-03-18 01:14:38.890 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 01:14:38.890 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 01:14:38.890 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.549 mm, average velocity = 4.688 mm/sec
17-03-18 01:14:41.820 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.000345,
17-03-18 01:14:41.890 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:14:41.890 -07 000000437 INF: FPGA: Recv YRDPOS 154387
17-03-18 01:14:41.900 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:41.900 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:14:41.920 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:14:41.920 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 9 counts (0.004 mm)
17-03-18 01:14:41.920 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3155 ms
17-03-18 01:14:41.920 -07 000000610 INF: =================== Cycle #85, Flow Cell Temp 60° ===================
17-03-18 01:14:41.920 -07 000000610 INF: =================== Cycle #85, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 01:14:42.240 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:14:42.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1376, R2=1430, Total=2806. Warn if over 250 bubbles per interval.
17-03-18 01:14:42.260 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:14:42.260 -07 000000480 INF: FPGA: Recv TEC2EN 
17-03-18 01:14:42.270 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:14:42.270 -07 000000610 INF: =================== Cycle #85, Flow Cell Temp 60° ===================
17-03-18 01:14:42.270 -07 000000610 INF: =================== Cycle #85 ===================
17-03-18 01:14:42.270 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:14:42.270 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:14:42.300 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:14:42.300 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 01:14:42.300 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:14:42.600 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:14:42.620 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:14:42.620 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:14:42.670 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:14:42.690 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:14:42.690 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:14:42.790 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3) ===================
17-03-18 01:14:42.790 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:14:42.790 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:14:42.820 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:14:42.820 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:14:42.820 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:14:42.950 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:14:42.990 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:14:46.120 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:14:46.150 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:14:46.570 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:14:46.600 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:14:47.020 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:14:47.050 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:14:47.050 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:14:47.050 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3) ===================
17-03-18 01:14:47.180 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:14:47.180 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.997626,
17-03-18 01:14:47.210 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:14:47.210 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:14:47.240 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 01:14:47.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1378, R2=1432, Total=2810. Warn if over 250 bubbles per interval.
17-03-18 01:14:47.340 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:14:47.370 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:14:47.370 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:14:47.370 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:14:47.500 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:14:47.530 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:14:47.960 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:14:47.990 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:14:47.990 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:14:47.990 -07 000000610 INF: =================== Cycle #85 ===================
17-03-18 01:14:49.210 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:14:49.210 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 01:14:49.210 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:14:49.230 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:14:49.230 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 01:14:49.230 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 01:14:49.360 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:14:49.380 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 01:14:49.380 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 01:14:49.430 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:14:49.450 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:14:49.450 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:14:49.550 -07 000000610 INF: =================== Cycle #85, Pumping Reagent CMS (4) ===================
17-03-18 01:14:49.550 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:14:49.550 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:14:49.580 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:14:49.580 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:14:49.580 -07 000000610 INF: =================== Cycle #85, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 01:14:49.710 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:14:49.750 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:14:51.190 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:14:51.220 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:14:51.640 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:14:51.670 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:14:51.670 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 01:14:51.670 -07 000000610 INF: =================== Cycle #85, Pumping Reagent CMS (4) ===================
17-03-18 01:14:51.800 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:14:51.830 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:14:51.830 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:14:51.960 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:14:51.990 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:14:51.990 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:14:51.990 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:14:52.120 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:14:52.150 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:14:52.240 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 01:14:52.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1379, R2=1433, Total=2812. Warn if over 250 bubbles per interval.
17-03-18 01:14:52.540 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.989471,
17-03-18 01:14:52.580 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:14:52.610 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:14:52.610 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:14:52.610 -07 000000610 INF: =================== Cycle #85 ===================
17-03-18 01:14:53.830 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:14:53.830 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:14:53.830 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:14:53.850 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:14:53.850 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 01:14:53.850 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 01:14:54.000 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:14:54.020 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 01:14:54.020 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 01:14:54.070 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:14:54.090 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:14:54.090 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:14:54.190 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3) ===================
17-03-18 01:14:54.190 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:14:54.190 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:14:54.220 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:14:54.220 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:14:54.220 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:14:54.350 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:14:54.390 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:14:55.260 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:14:55.290 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:14:55.290 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:14:55.290 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3) ===================
17-03-18 01:14:55.420 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:14:55.450 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:14:55.450 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:14:55.580 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:14:55.610 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:14:55.610 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:14:55.610 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:14:55.740 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:14:55.770 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:14:56.200 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:14:56.230 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:14:56.230 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:14:56.230 -07 000000610 INF: =================== Cycle #85 ===================
17-03-18 01:14:56.230 -07 000000461 INF: WaitCommand(10000) start
17-03-18 01:14:56.230 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:14:56.230 -07 000000590 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:14:57.240 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:14:57.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1379, R2=1433, Total=2812. Warn if over 250 bubbles per interval.
17-03-18 01:14:57.450 -07 000000590 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:14:57.450 -07 000000590 INF: LanePump: Xmit /1?\r
17-03-18 01:14:57.480 -07 000000590 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:14:57.480 -07 000000590 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:14:57.610 -07 000000590 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:14:57.650 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:14:57.900 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.990831,
17-03-18 01:14:59.180 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 01:14:59.210 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:14:59.630 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 01:14:59.660 -07 000000590 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:14:59.660 -07 000000590 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:14:59.660 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:14:59.660 -07 000000590 INF: ===================  ===================
17-03-18 01:15:02.240 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:15:02.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1379, R2=1433, Total=2812. Warn if over 250 bubbles per interval.
17-03-18 01:15:03.260 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.012614,
17-03-18 01:15:06.240 -07 000000461 INF: WaitCommand(10000) end
17-03-18 01:15:06.240 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3) ===================
17-03-18 01:15:06.240 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 01:15:06.240 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:15:06.270 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:15:06.270 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:15:06.270 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:15:06.400 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 01:15:06.440 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:15:07.240 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:15:07.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1379, R2=1433, Total=2812. Warn if over 250 bubbles per interval.
17-03-18 01:15:08.620 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.988112,
17-03-18 01:15:12.240 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 01:15:12.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:15:12.570 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:15:12.600 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:15:13.020 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:15:13.050 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:15:13.470 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:15:13.500 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:15:13.920 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:15:13.950 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:15:13.980 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.005817,
17-03-18 01:15:14.370 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:15:14.400 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:15:14.400 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 01:15:14.400 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3) ===================
17-03-18 01:15:14.530 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:15:14.560 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:15:14.560 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:15:14.690 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:15:14.720 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:15:14.720 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:15:14.720 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:15:14.850 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:15:14.880 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:15:15.310 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:15:15.340 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:15:15.340 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:15:15.340 -07 000000610 INF: =================== Cycle #85 ===================
17-03-18 01:15:16.560 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 01:15:16.560 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 01:15:16.560 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:15:16.580 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:15:16.580 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 01:15:16.580 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 01:15:16.790 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:15:16.810 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 01:15:16.810 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 01:15:16.860 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:15:16.880 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:15:16.880 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:15:16.980 -07 000000610 INF: =================== Cycle #85, Pumping Reagent IMT (1) ===================
17-03-18 01:15:16.980 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:15:16.980 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:15:17.010 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:15:17.010 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:15:17.010 -07 000000610 INF: =================== Cycle #85, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 01:15:17.140 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:15:17.180 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:15:17.240 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:15:17.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:15:18.620 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:15:18.650 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:15:19.070 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:15:19.100 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:15:19.100 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:15:19.100 -07 000000610 INF: =================== Cycle #85, Pumping Reagent IMT (1) ===================
17-03-18 01:15:19.230 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:15:19.260 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:15:19.260 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:15:19.340 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.971733,
17-03-18 01:15:19.390 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:15:19.420 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:15:19.420 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:15:19.420 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:15:19.550 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:15:19.580 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:15:20.010 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:15:20.040 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:15:20.040 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:15:20.040 -07 000000610 INF: =================== Cycle #85 ===================
17-03-18 01:15:21.260 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 01:15:21.260 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:15:21.260 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:15:21.280 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:15:21.280 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 01:15:21.280 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:15:21.510 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:15:21.530 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 01:15:21.530 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 01:15:21.580 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:15:21.600 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:15:21.600 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:15:21.700 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3) ===================
17-03-18 01:15:21.700 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:15:21.700 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:15:21.730 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:15:21.730 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:15:21.730 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:15:21.860 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:15:21.900 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:15:22.240 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:15:22.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:15:22.770 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:15:22.800 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:15:22.800 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:15:22.800 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3) ===================
17-03-18 01:15:22.930 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:15:22.960 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:15:22.960 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:15:23.090 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:15:23.120 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:15:23.120 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:15:23.120 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:15:23.250 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:15:23.280 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:15:23.710 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:15:23.740 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:15:23.740 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:15:23.740 -07 000000610 INF: =================== Cycle #85 ===================
17-03-18 01:15:23.740 -07 000000610 INF: =================== Cycle #85, Flow Cell Temp 65° ===================
17-03-18 01:15:23.740 -07 000000610 INF: =================== Cycle #85, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 01:15:23.740 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 01:15:23.740 -07 000000585 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:15:23.750 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:15:23.750 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:15:23.750 -07 000000590 INF: FPGA: Recv TEC2EN 
17-03-18 01:15:23.760 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:15:23.760 -07 000000610 INF: =================== Cycle #85, Flow Cell Temp 65° ===================
17-03-18 01:15:23.760 -07 000000610 INF: =================== Cycle #85 ===================
17-03-18 01:15:23.760 -07 000000610 INF: WaitCommand(30000) start
17-03-18 01:15:24.700 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.98264,
17-03-18 01:15:27.240 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:15:27.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:15:30.060 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.983999,
17-03-18 01:15:32.240 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:15:32.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:15:35.420 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.005817,
17-03-18 01:15:37.240 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:15:37.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:15:40.780 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.012614,
17-03-18 01:15:42.240 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:15:42.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:15:46.140 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.000345,
17-03-18 01:15:47.240 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:15:47.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:15:51.500 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.993549,
17-03-18 01:15:52.240 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:15:52.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:15:53.770 -07 000000610 INF: WaitCommand(30000) end
17-03-18 01:15:53.770 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3) ===================
17-03-18 01:15:53.770 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 01:15:53.870 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:15:53.900 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:15:53.900 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:15:53.900 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:15:54.030 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 01:15:54.070 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:15:54.610 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:15:54.640 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:15:54.640 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 01:15:54.640 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3) ===================
17-03-18 01:15:54.770 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:15:54.800 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:15:54.800 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:15:54.930 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:15:54.960 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:15:54.960 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:15:54.960 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:15:55.090 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:15:55.120 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:15:55.550 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:15:55.580 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:15:55.580 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:15:55.580 -07 000000610 INF: =================== Cycle #85 ===================
17-03-18 01:15:55.580 -07 000000487 INF: WaitCommand(30000) start
17-03-18 01:15:55.580 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:15:55.580 -07 000000561 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:15:56.800 -07 000000561 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:15:56.800 -07 000000561 INF: LanePump: Xmit /1?\r
17-03-18 01:15:56.830 -07 000000561 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:15:56.830 -07 000000561 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:15:56.860 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.033041,
17-03-18 01:15:56.960 -07 000000561 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:15:57.000 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:15:57.240 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:15:57.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:15:59.340 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-18 01:15:59.370 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:15:59.790 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-18 01:15:59.820 -07 000000561 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:15:59.820 -07 000000561 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 01:15:59.820 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:15:59.820 -07 000000561 INF: ===================  ===================
17-03-18 01:16:02.220 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.004458,
17-03-18 01:16:02.240 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:16:02.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:16:07.240 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:16:07.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:16:07.580 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.98264,
17-03-18 01:16:12.240 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:16:12.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:16:12.940 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.988112,
17-03-18 01:16:17.240 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:16:17.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:16:18.300 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.975845,
17-03-18 01:16:22.240 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:16:22.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:16:23.660 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.997626,
17-03-18 01:16:25.590 -07 000000487 INF: WaitCommand(30000) end
17-03-18 01:16:25.590 -07 000000610 INF: =================== Cycle #85, Flow Cell Temp 22° ===================
17-03-18 01:16:25.590 -07 000000610 INF: =================== Cycle #85, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 01:16:25.590 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 01:16:25.590 -07 000000474 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:16:25.600 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:16:25.600 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:16:25.600 -07 000000501 INF: FPGA: Recv TEC2EN 
17-03-18 01:16:25.610 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:25.610 -07 000000610 INF: =================== Cycle #85, Flow Cell Temp 22° ===================
17-03-18 01:16:25.610 -07 000000610 INF: =================== Cycle #85 ===================
17-03-18 01:16:25.610 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3) ===================
17-03-18 01:16:25.610 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:16:25.610 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:16:25.650 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:16:25.650 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:16:25.650 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:16:25.780 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:16:25.820 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:16:27.240 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:16:27.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:16:28.950 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:16:28.980 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:16:29.020 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.020806,
17-03-18 01:16:29.400 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:16:29.690 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:16:30.110 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:16:30.140 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:16:30.140 -07 000000610 INF: LanePump: Waited 4319 ms for pump motion to complete
17-03-18 01:16:30.140 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3) ===================
17-03-18 01:16:30.270 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:16:30.300 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:16:30.300 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:16:30.430 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:16:30.460 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:16:30.460 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:16:30.460 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:16:30.590 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:16:30.620 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:16:31.050 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:16:31.080 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:16:31.080 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:16:31.080 -07 000000610 INF: =================== Cycle #85 ===================
17-03-18 01:16:32.240 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:16:32.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:16:32.300 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 01:16:32.300 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 01:16:32.300 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:16:32.320 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:16:32.320 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 01:16:32.320 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 01:16:32.470 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:16:32.490 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:16:32.490 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:16:32.540 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:16:32.560 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:16:32.560 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:16:32.660 -07 000000610 INF: =================== Cycle #85, Pumping Reagent USM (2) ===================
17-03-18 01:16:32.660 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:16:32.660 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:16:32.690 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:16:32.690 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:16:32.690 -07 000000610 INF: =================== Cycle #85, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 01:16:32.820 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:16:32.860 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:16:34.300 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:16:34.330 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:16:34.750 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:16:34.780 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:16:34.780 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:16:34.780 -07 000000610 INF: =================== Cycle #85, Pumping Reagent USM (2) ===================
17-03-18 01:16:34.910 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:16:34.940 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:16:34.940 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:16:35.000 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.026244,
17-03-18 01:16:35.070 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:16:35.100 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:16:35.100 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:16:35.100 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:16:35.230 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:16:35.260 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:16:35.690 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:16:35.720 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:16:35.720 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:16:35.720 -07 000000610 INF: =================== Cycle #85 ===================
17-03-18 01:16:36.940 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:16:36.940 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:16:36.940 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:16:36.960 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:16:36.960 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 01:16:36.960 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:16:37.110 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:16:37.130 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:16:37.130 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:16:37.180 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:16:37.200 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:16:37.200 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:16:37.240 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:16:37.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:16:37.300 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3) ===================
17-03-18 01:16:37.300 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:16:37.300 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:16:37.330 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:16:37.330 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:16:37.330 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:16:37.460 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:16:37.500 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:16:38.370 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:16:38.400 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:16:38.400 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:16:38.400 -07 000000610 INF: =================== Cycle #85, Pumping Reagent PR2 (3) ===================
17-03-18 01:16:38.530 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:16:38.560 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:16:38.560 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:16:38.690 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:16:38.720 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:16:38.720 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:16:38.720 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:16:38.850 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:16:38.880 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:16:39.310 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:16:39.340 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:16:39.340 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:16:39.340 -07 000000610 INF: =================== Cycle #85 ===================
17-03-18 01:16:39.340 -07 000000585 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:16:39.340 -07 000000501 INF: WaitCommand(10000) start
17-03-18 01:16:39.340 -07 000000585 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:16:40.370 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.024884,
17-03-18 01:16:40.560 -07 000000585 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:16:40.560 -07 000000585 INF: LanePump: Xmit /1?\r
17-03-18 01:16:40.590 -07 000000585 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:16:40.590 -07 000000585 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:16:40.720 -07 000000585 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:16:40.760 -07 000000585 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:16:42.240 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:16:42.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:16:42.290 -07 000000585 INF: LanePump: Xmit /1Q\r
17-03-18 01:16:42.320 -07 000000585 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:16:42.740 -07 000000585 INF: LanePump: Xmit /1Q\r
17-03-18 01:16:42.770 -07 000000585 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:16:42.770 -07 000000585 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:16:42.770 -07 000000585 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:16:42.770 -07 000000585 INF: ===================  ===================
17-03-18 01:16:45.740 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.003063,
17-03-18 01:16:47.240 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:16:47.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:16:49.350 -07 000000501 INF: WaitCommand(10000) end
17-03-18 01:16:49.350 -07 000000610 INF: =================== Cycle #85, Imaging ===================
17-03-18 01:16:49.350 -07 000000610 INF: Imaging Cycle 85: ScanTilesCommand Cycle 85 time start.
17-03-18 01:16:49.350 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 01:16:49.350 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:16:49.380 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:16:49.380 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 01:16:49.380 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 01:16:49.680 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:16:49.700 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:16:49.700 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:16:49.750 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:16:49.770 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:16:49.770 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:16:49.770 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:16:49.770 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 01:16:49.770 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:16:49.770 -07 000000501 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 01:16:49.770 -07 000000585 INF: FPGA: Recv EXLED1ON 
17-03-18 01:16:49.780 -07 000000501 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:16:49.780 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 01:16:49.780 -07 000000585 INF: FPGA: Recv EXLED1ADCR 23143
17-03-18 01:16:49.790 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:49.790 -07 000000501 INF: RedLED: Using Red data: Photodiode ADC 23143 --> 7.4 mW (old method), or 205.1 mW (new method). Difference = 197.7 mW
17-03-18 01:16:49.790 -07 000000501 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 01:16:49.790 -07 000000461 INF: FPGA: Recv EXLED1OFF 
17-03-18 01:16:49.800 -07 000000501 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:49.800 -07 000000501 INF: RedLED: LED was on for 20 ms
17-03-18 01:16:49.800 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 01:16:49.800 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 01:16:49.800 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:16:49.800 -07 000000501 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 01:16:49.800 -07 000000625 INF: FPGA: Recv EXLED2ON 
17-03-18 01:16:49.810 -07 000000501 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:16:49.810 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:16:49.810 -07 000000585 INF: FPGA: Recv EXLED1ADCR 2102
17-03-18 01:16:49.820 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:49.820 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 2102 --> 0.9 mW (old method), or 182.6 mW (new method). Difference = 181.7 mW
17-03-18 01:16:49.820 -07 000000501 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 01:16:49.820 -07 000000461 INF: FPGA: Recv EXLED2OFF 
17-03-18 01:16:49.830 -07 000000501 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:49.830 -07 000000501 INF: GreenLED: LED was on for 19 ms
17-03-18 01:16:49.830 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 01:16:49.830 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:16:49.830 -07 000000502 INF: FPGA: Recv EMCUR 
17-03-18 01:16:49.840 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:16:49.840 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 01:16:50.340 -07 000000625 INF: FPGA: Recv EMOUT
17-03-18 01:16:50.340 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 503 ms overall
17-03-18 01:16:50.340 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 01:16:50.340 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-18 01:16:50.350 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:16:50.350 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:16:50.350 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126265748242264. ------
17-03-18 01:16:50.350 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:16:50.350 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17838 mm
17-03-18 01:16:50.350 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:16:50.350 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 38968, sync = True, waitForSettling = False)
17-03-18 01:16:50.350 -07 000000585 INF: Z Motor: Moving to -0.178384 mm, started at -0.126266 mm, distance = -52.12 um
17-03-18 01:16:50.350 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:16:50.350 -07 000000625 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 01:16:50.360 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:16:50.360 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:16:50.360 -07 000000585 INF: FPGA: Xmit ZDACW 38968\n [Z Motor]
17-03-18 01:16:50.360 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:16:50.370 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:16:50.370 -07 000000585 INF: FPGA: 'ZDACW 38968' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:16:50.380 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:16:50.380 -07 000000561 INF: FPGA: Recv YRDPOS 154387
17-03-18 01:16:50.390 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:16:50.390 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 01:16:50.390 -07 000000625 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:16:50.390 -07 000000625 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 01:16:50.390 -07 000000625 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:16:50.390 -07 000000561 INF: FPGA: Recv ZDACR 38968
17-03-18 01:16:50.400 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:16:50.400 -07 000000585 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 01:16:50.400 -07 000000625 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:16:50.570 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:16:50.570 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 01:16:51.110 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.004458,
17-03-18 01:16:52.080 -07 000000487 INF: FPGA: Recv YMVTO 122703 24782
17-03-18 01:16:52.080 -07 000000625 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1695 ms overall
17-03-18 01:16:52.080 -07 000000625 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:16:52.080 -07 000000625 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24782 steps (15.489 mm). Slippage = 0.017 mm (0.00%).
17-03-18 01:16:52.080 -07 000000625 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1696 ms, distance = 15.472 mm, average velocity = 9.122 mm/sec
17-03-18 01:16:52.240 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:16:52.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:16:54.930 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:16:54.930 -07 000000561 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:16:54.940 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:16:54.940 -07 000000625 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:16:54.960 -07 000000625 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:16:54.960 -07 000000625 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 01:16:54.960 -07 000000625 INF: Y Motor: Moved to 59.9106 after 4607 ms
17-03-18 01:16:54.970 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178384 mm (DAC = 38968)
17-03-18 01:16:54.970 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:54.970 -07 000000611 INF: FPGA: Recv ZSGSRD 37060
17-03-18 01:16:54.980 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:54.980 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:54.980 -07 000000461 INF: FPGA: Recv ZSGSRD 37061
17-03-18 01:16:54.990 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:54.990 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:54.990 -07 000000561 INF: FPGA: Recv ZSGSRD 37063
17-03-18 01:16:55.000 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:55.000 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:55.000 -07 000000585 INF: FPGA: Recv ZSGSRD 37056
17-03-18 01:16:55.010 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:55.010 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:55.010 -07 000000487 INF: FPGA: Recv ZSGSRD 37057
17-03-18 01:16:55.020 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:55.020 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:55.020 -07 000000502 INF: FPGA: Recv ZSGSRD 37061
17-03-18 01:16:55.030 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:55.030 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:55.030 -07 000000487 INF: FPGA: Recv ZSGSRD 37058
17-03-18 01:16:55.040 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:55.040 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:55.040 -07 000000625 INF: FPGA: Recv ZSGSRD 37055
17-03-18 01:16:55.050 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:55.050 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:55.050 -07 000000461 INF: FPGA: Recv ZSGSRD 37063
17-03-18 01:16:55.060 -07 000000501 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:55.060 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:55.060 -07 000000611 INF: FPGA: Recv ZSGSRD 37056
17-03-18 01:16:55.070 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:55.070 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:16:55.070 -07 000000585 INF: FPGA: Recv ZPIEZORD 33197
17-03-18 01:16:55.080 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:55.080 -07 000000501 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.946 V. Piezo Error = -8.5 V.
17-03-18 01:16:55.080 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37059 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37059 (-177.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37055 (-177.5 uncal um), Max = 37063 (-177.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:16:55.080 -07 000000501 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37059, posNoise = 4, negNoise = 4
17-03-18 01:16:55.080 -07 000000501 INF: Z Motor: After move to -0.178384, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:16:55.080 -07 000000501 INF: Z Motor: Settle wait time = 4611 ms, measure time = 110 ms (allowed 150 ms), total time = 4721 ms
17-03-18 01:16:55.080 -07 000000501 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:16:55.120 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-18 01:16:55.120 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:16:55.120 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:16:55.120 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:16:55.120 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:16:55.120 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:16:55.120 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:16:55.120 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:16:55.120 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:16:55.120 -07 000000487 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:16:55.140 -07 000000487 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-18 01:16:55.140 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:16:55.150 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 01:16:55.150 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:16:55.160 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:16:55.160 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 38 ms.
17-03-18 01:16:55.160 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:16:55.210 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:16:55.510 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:16:55.510 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:16:55.510 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:16:55.510 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596461440, 0x0, 559484976) start.
17-03-18 01:16:55.550 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:16:55.550 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:16:55.550 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 01:16:55.640 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596461440, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:16:55.640 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:16:55.640 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:16:55.640 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:16:55.650 -07 000000461 INF: Image SNR check: start
17-03-18 01:16:55.650 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:16:55.650 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:16:55.660 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:16:55.660 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:16:55.660 -07 000000461 INF: Image SNR check: pass  [peak (Max-Min)=178.33]
17-03-18 01:16:55.660 -07 000000461 INF: Autofocus start
17-03-18 01:16:55.660 -07 000000461 INF: MeasureProfile start
17-03-18 01:16:55.680 -07 000000461 INF: MeasureProfile done
17-03-18 01:16:55.680 -07 000000461 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:16:55.680 -07 000000461 INF: Autofocus finished
17-03-18 01:16:55.860 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:16:55.860 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:16:55.860 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.178398229772654. ----------
17-03-18 01:16:55.860 -07 000000610 INF: Cycle	85	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:16:55.870 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37500, sync = True, waitForSettling = True)
17-03-18 01:16:55.870 -07 000000610 INF: Z Motor: Moving to -0.171664 mm, started at -0.178398 mm, distance = 6.73 um
17-03-18 01:16:55.870 -07 000000610 INF: FPGA: Xmit ZDACW 37500\n [Z Motor]
17-03-18 01:16:55.870 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:16:55.880 -07 000000610 INF: FPGA: 'ZDACW 37500' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:55.880 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:16:55.880 -07 000000585 INF: FPGA: Recv ZDACR 37500
17-03-18 01:16:55.890 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:55.890 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:16:56.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:56.040 -07 000000585 INF: FPGA: Recv ZSGSRD 36011
17-03-18 01:16:56.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:16:56.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:56.050 -07 000000585 INF: FPGA: Recv ZSGSRD 36011
17-03-18 01:16:56.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:56.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:56.060 -07 000000585 INF: FPGA: Recv ZSGSRD 36015
17-03-18 01:16:56.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:56.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:56.070 -07 000000585 INF: FPGA: Recv ZSGSRD 36012
17-03-18 01:16:56.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:56.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:56.080 -07 000000474 INF: FPGA: Recv ZSGSRD 36018
17-03-18 01:16:56.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:56.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:56.090 -07 000000585 INF: FPGA: Recv ZSGSRD 36012
17-03-18 01:16:56.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:56.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:56.100 -07 000000585 INF: FPGA: Recv ZSGSRD 36009
17-03-18 01:16:56.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:56.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:56.110 -07 000000585 INF: FPGA: Recv ZSGSRD 36014
17-03-18 01:16:56.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:56.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:56.120 -07 000000585 INF: FPGA: Recv ZSGSRD 36009
17-03-18 01:16:56.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:56.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:56.130 -07 000000585 INF: FPGA: Recv ZSGSRD 36015
17-03-18 01:16:56.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:56.140 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:16:56.140 -07 000000585 INF: FPGA: Recv ZPIEZORD 31793
17-03-18 01:16:56.150 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:56.150 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -9.3 V.
17-03-18 01:16:56.150 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36013 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36012 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36009 (-170.8 uncal um), Max = 36018 (-170.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:16:56.150 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36013, posNoise = 5, negNoise = 4
17-03-18 01:16:56.150 -07 000000610 INF: Z Motor: After move to -0.171664, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:16:56.150 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:16:56.150 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:16:56.150 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:16:56.150 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:16:56.150 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:16:56.150 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:16:56.150 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:16:56.150 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:16:56.150 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:16:56.150 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:16:56.150 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:16:56.160 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:16:56.160 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:16:56.160 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:16:56.160 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:16:56.170 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:16:56.170 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:16:56.180 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 01:16:56.180 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:16:56.180 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:16:56.180 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:16:56.190 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:16:56.190 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 01:16:56.190 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37677 150\n [Camera]
17-03-18 01:16:56.390 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:16:56.490 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.994908,
17-03-18 01:16:56.780 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:16:56.780 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:16:56.780 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:16:56.780 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:16:56.780 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:16:56.780 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:16:56.780 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:16:56.780 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:16:56.790 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:16:56.790 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:16:56.970 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37677 775
17-03-18 01:16:57.120 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:16:57.180 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:16:57.180 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:16:57.180 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:16:57.190 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:16:57.190 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:16:57.190 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:16:57.190 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:16:57.190 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:16:57.190 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:16:57.200 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:16:57.240 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:16:57.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:16:57.310 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:16:57.310 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:16:57.310 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:16:57.310 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:16:57.310 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 01:16:57.310 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:16:57.310 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:16:57.310 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:16:57.310 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:16:57.310 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:16:57.500 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:16:57.500 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:16:57.500 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37677 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-18 01:16:57.500 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:16:57.500 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.171678503872372. ------
17-03-18 01:16:57.510 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17773 mm
17-03-18 01:16:57.510 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:16:57.510 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:16:57.510 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38826, sync = True, waitForSettling = False)
17-03-18 01:16:57.510 -07 000000474 INF: Z Motor: Moving to -0.177734 mm, started at -0.171679 mm, distance = -6.06 um
17-03-18 01:16:57.510 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:16:57.510 -07 000000461 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 01:16:57.510 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:16:57.520 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:16:57.520 -07 000000474 INF: FPGA: Xmit ZDACW 38826\n [Z Motor]
17-03-18 01:16:57.520 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:16:57.530 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:16:57.530 -07 000000474 INF: FPGA: 'ZDACW 38826' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:16:57.530 -07 000000424 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:16:57.540 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:16:57.540 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:16:57.540 -07 000000461 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:16:57.540 -07 000000461 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:16:57.540 -07 000000461 INF: Y Motor: Moving 1331 steps2
17-03-18 01:16:57.550 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:16:57.550 -07 000000467 INF: FPGA: Recv ZDACR 38826
17-03-18 01:16:57.560 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:16:57.560 -07 000000474 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 01:16:57.560 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:16:57.720 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 01:16:57.720 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:16:57.720 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:16:57.720 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 01:16:57.720 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:16:57.720 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:16:57.720 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:16:57.720 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 01:16:57.730 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:16:57.730 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 01:16:57.740 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:16:57.740 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 226 ms overall
17-03-18 01:16:57.930 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 01:16:57.930 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:16:57.970 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:16:57.970 -07 000000487 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:16:57.980 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:16:57.980 -07 000000461 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:16:57.980 -07 000000461 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:16:57.980 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-18 01:16:58.930 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:16:58.930 -07 000000502 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:16:58.940 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:16:58.940 -07 000000461 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:16:58.960 -07 000000461 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:16:58.960 -07 000000461 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:16:58.960 -07 000000461 INF: Y Motor: Moved to 60.7329 after 1450 ms (table move)
17-03-18 01:16:58.970 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177734 mm (DAC = 38826)
17-03-18 01:16:58.970 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:58.970 -07 000000561 INF: FPGA: Recv ZSGSRD 36954
17-03-18 01:16:58.980 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:16:58.980 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:58.980 -07 000000424 INF: FPGA: Recv ZSGSRD 36959
17-03-18 01:16:58.990 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:58.990 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:58.990 -07 000000467 INF: FPGA: Recv ZSGSRD 36958
17-03-18 01:16:59.000 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:59.000 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:59.000 -07 000000585 INF: FPGA: Recv ZSGSRD 36959
17-03-18 01:16:59.010 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:59.010 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:59.010 -07 000000569 INF: FPGA: Recv ZSGSRD 36963
17-03-18 01:16:59.020 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:59.020 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:59.020 -07 000000487 INF: FPGA: Recv ZSGSRD 36957
17-03-18 01:16:59.030 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:59.030 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:59.030 -07 000000585 INF: FPGA: Recv ZSGSRD 36957
17-03-18 01:16:59.040 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:59.040 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:59.040 -07 000000625 INF: FPGA: Recv ZSGSRD 36957
17-03-18 01:16:59.050 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:16:59.050 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:59.050 -07 000000625 INF: FPGA: Recv ZSGSRD 36953
17-03-18 01:16:59.060 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:59.060 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:16:59.060 -07 000000625 INF: FPGA: Recv ZSGSRD 36955
17-03-18 01:16:59.070 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:59.070 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:16:59.070 -07 000000585 INF: FPGA: Recv ZPIEZORD 33017
17-03-18 01:16:59.080 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:59.080 -07 000000611 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.924 V. Piezo Error = -8.7 V.
17-03-18 01:16:59.080 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36957 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36957 (-176.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36953 (-176.8 uncal um), Max = 36963 (-176.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:16:59.080 -07 000000611 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36957, posNoise = 6, negNoise = 4
17-03-18 01:16:59.080 -07 000000611 INF: Z Motor: After move to -0.177734, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:16:59.080 -07 000000611 INF: Z Motor: Settle wait time = 1454 ms, measure time = 109 ms (allowed 150 ms), total time = 1563 ms
17-03-18 01:16:59.080 -07 000000611 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:16:59.130 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 01:16:59.130 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:16:59.130 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:16:59.130 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:16:59.130 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:16:59.130 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:16:59.130 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:16:59.130 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:16:59.130 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:16:59.130 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:16:59.140 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:16:59.140 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:16:59.150 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:16:59.150 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:16:59.150 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:16:59.200 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:16:59.500 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:16:59.500 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:16:59.500 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:16:59.500 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615542824, 0x0, 559484976) start.
17-03-18 01:16:59.540 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:16:59.540 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 01:16:59.540 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 01:16:59.630 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615542824, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:16:59.630 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:16:59.630 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:16:59.630 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:16:59.640 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:16:59.640 -07 000000585 INF: Autofocus start
17-03-18 01:16:59.640 -07 000000585 INF: MeasureProfile start
17-03-18 01:16:59.640 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:16:59.650 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:16:59.650 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:16:59.650 -07 000000585 INF: MeasureProfile done
17-03-18 01:16:59.650 -07 000000585 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:16:59.650 -07 000000585 INF: Autofocus finished
17-03-18 01:16:59.850 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:16:59.850 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 2 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 01:16:59.850 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.177742960134195. ----------
17-03-18 01:16:59.860 -07 000000610 INF: Cycle	85	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:16:59.860 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37305, sync = True, waitForSettling = True)
17-03-18 01:16:59.860 -07 000000610 INF: Z Motor: Moving to -0.170771 mm, started at -0.177743 mm, distance = 6.97 um
17-03-18 01:16:59.860 -07 000000610 INF: FPGA: Xmit ZDACW 37305\n [Z Motor]
17-03-18 01:16:59.860 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:16:59.870 -07 000000610 INF: FPGA: 'ZDACW 37305' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:16:59.870 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:16:59.870 -07 000000611 INF: FPGA: Recv ZDACR 37305
17-03-18 01:16:59.880 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:16:59.880 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:17:00.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:00.030 -07 000000585 INF: FPGA: Recv ZSGSRD 35871
17-03-18 01:17:00.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:00.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:00.040 -07 000000585 INF: FPGA: Recv ZSGSRD 35874
17-03-18 01:17:00.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:17:00.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:00.050 -07 000000625 INF: FPGA: Recv ZSGSRD 35869
17-03-18 01:17:00.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:00.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:00.060 -07 000000625 INF: FPGA: Recv ZSGSRD 35866
17-03-18 01:17:00.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:00.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:00.070 -07 000000611 INF: FPGA: Recv ZSGSRD 35875
17-03-18 01:17:00.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:00.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:00.080 -07 000000625 INF: FPGA: Recv ZSGSRD 35874
17-03-18 01:17:00.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:00.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:00.090 -07 000000625 INF: FPGA: Recv ZSGSRD 35876
17-03-18 01:17:00.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:00.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:00.100 -07 000000625 INF: FPGA: Recv ZSGSRD 35871
17-03-18 01:17:00.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:00.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:00.110 -07 000000467 INF: FPGA: Recv ZSGSRD 35870
17-03-18 01:17:00.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:00.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:00.120 -07 000000585 INF: FPGA: Recv ZSGSRD 35880
17-03-18 01:17:00.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:00.130 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:00.130 -07 000000611 INF: FPGA: Recv ZPIEZORD 31589
17-03-18 01:17:00.140 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:00.140 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.692 V. Piezo Error = -9.4 V.
17-03-18 01:17:00.140 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35873 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35872 (-169.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35866 (-169.9 uncal um), Max = 35880 (-169.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:17:00.140 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35873, posNoise = 7, negNoise = 7
17-03-18 01:17:00.140 -07 000000610 INF: Z Motor: After move to -0.170771, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:00.140 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:17:00.140 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:00.140 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:00.140 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:00.140 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:00.140 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:17:00.140 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:17:00.140 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:00.140 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:17:00.140 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:00.140 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:17:00.140 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:17:00.140 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:17:00.140 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:17:00.140 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:17:00.150 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:17:00.150 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:17:00.160 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:17:00.160 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:17:00.160 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 01:17:00.160 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:17:00.160 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37482 150\n [Camera]
17-03-18 01:17:00.360 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:17:00.750 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:17:00.750 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:17:00.750 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:00.760 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:00.760 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:17:00.760 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:17:00.760 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:17:00.760 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:00.760 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:00.760 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:17:00.950 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37482 775
17-03-18 01:17:01.100 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:17:01.150 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:17:01.150 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:17:01.150 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:01.160 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:01.160 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:17:01.160 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:17:01.160 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:17:01.160 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:01.160 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:01.170 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:17:01.290 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:17:01.290 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:17:01.290 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:01.290 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:01.290 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:17:01.290 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:17:01.290 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:17:01.290 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:01.290 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:01.290 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:17:01.480 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:17:01.480 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:17:01.480 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37482 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:17:01.480 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:17:01.480 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.170779114172526. ------
17-03-18 01:17:01.480 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:01.480 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17742 mm
17-03-18 01:17:01.480 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:17:01.490 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:01.490 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:17:01.490 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:17:01.490 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:17:01.490 -07 000000467 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 01:17:01.490 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38758, sync = True, waitForSettling = False)
17-03-18 01:17:01.490 -07 000000474 INF: Z Motor: Moving to -0.177423 mm, started at -0.170779 mm, distance = -6.64 um
17-03-18 01:17:01.500 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:01.500 -07 000000502 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:17:01.510 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:17:01.510 -07 000000467 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:01.510 -07 000000467 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:17:01.510 -07 000000467 INF: Y Motor: Moving 1344 steps-20
17-03-18 01:17:01.510 -07 000000474 INF: FPGA: Xmit ZDACW 38758\n [Z Motor]
17-03-18 01:17:01.510 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:17:01.520 -07 000000474 INF: FPGA: 'ZDACW 38758' command took 1 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 01:17:01.520 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:01.520 -07 000000461 INF: FPGA: Recv ZDACR 38758
17-03-18 01:17:01.530 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:01.530 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:17:01.530 -07 000000474 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 01:17:01.690 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:17:01.690 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:17:01.690 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:01.690 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:17:01.690 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:17:01.690 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:17:01.690 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:17:01.690 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:01.700 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:01.700 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:17:01.700 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:17:01.700 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:17:01.860 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.039839,
17-03-18 01:17:01.900 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 01:17:01.900 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:17:01.950 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:01.950 -07 000000618 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:17:01.960 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:01.960 -07 000000467 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:01.960 -07 000000467 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:17:01.960 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 01:17:02.250 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:17:02.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:17:02.910 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:02.910 -07 000000561 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:17:02.920 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:02.920 -07 000000467 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:02.940 -07 000000467 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:17:02.940 -07 000000467 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:17:02.940 -07 000000467 INF: Y Motor: Moved to 61.5635 after 1455 ms (table move)
17-03-18 01:17:02.950 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177423 mm (DAC = 38758)
17-03-18 01:17:02.950 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:02.950 -07 000000618 INF: FPGA: Recv ZSGSRD 36910
17-03-18 01:17:02.960 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:02.960 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:02.960 -07 000000625 INF: FPGA: Recv ZSGSRD 36906
17-03-18 01:17:02.970 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:02.970 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:02.970 -07 000000618 INF: FPGA: Recv ZSGSRD 36898
17-03-18 01:17:02.980 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:02.980 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:02.980 -07 000000618 INF: FPGA: Recv ZSGSRD 36914
17-03-18 01:17:02.990 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:02.990 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:02.990 -07 000000618 INF: FPGA: Recv ZSGSRD 36918
17-03-18 01:17:03.000 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:03.000 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:03.000 -07 000000625 INF: FPGA: Recv ZSGSRD 36908
17-03-18 01:17:03.010 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:03.010 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:03.010 -07 000000618 INF: FPGA: Recv ZSGSRD 36906
17-03-18 01:17:03.020 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:03.020 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:03.020 -07 000000618 INF: FPGA: Recv ZSGSRD 36902
17-03-18 01:17:03.030 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:03.030 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:03.030 -07 000000618 INF: FPGA: Recv ZSGSRD 36908
17-03-18 01:17:03.040 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:03.040 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:03.040 -07 000000618 INF: FPGA: Recv ZSGSRD 36907
17-03-18 01:17:03.050 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:03.050 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:03.050 -07 000000625 INF: FPGA: Recv ZPIEZORD 32968
17-03-18 01:17:03.060 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:03.060 -07 000000424 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.914 V. Piezo Error = -8.7 V.
17-03-18 01:17:03.060 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36908 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36908 (-176.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36898 (-176.5 uncal um), Max = 36918 (-176.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:17:03.060 -07 000000424 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36908, posNoise = 10, negNoise = 10
17-03-18 01:17:03.060 -07 000000424 INF: Z Motor: After move to -0.177423, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:03.060 -07 000000424 INF: Z Motor: Settle wait time = 1458 ms, measure time = 110 ms (allowed 150 ms), total time = 1568 ms
17-03-18 01:17:03.060 -07 000000424 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:17:03.100 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 01:17:03.100 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:17:03.100 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:03.100 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:03.100 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:03.100 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:03.100 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:17:03.100 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:03.100 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:17:03.100 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:17:03.110 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:17:03.110 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:17:03.110 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:17:03.110 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:17:03.120 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:17:03.160 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:17:03.460 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:17:03.460 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:17:03.460 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:17:03.460 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 01:17:03.500 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:17:03.500 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 01:17:03.500 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:17:03.580 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:17:03.580 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:03.580 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:17:03.580 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:17:03.600 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:03.600 -07 000000618 INF: Autofocus start
17-03-18 01:17:03.600 -07 000000618 INF: MeasureProfile start
17-03-18 01:17:03.600 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:03.610 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:17:03.610 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:17:03.610 -07 000000618 INF: MeasureProfile done
17-03-18 01:17:03.610 -07 000000618 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:17:03.610 -07 000000618 INF: Autofocus finished
17-03-18 01:17:03.810 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:17:03.810 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 01:17:03.810 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.177428173739248. ----------
17-03-18 01:17:03.820 -07 000000610 INF: Cycle	85	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:17:03.820 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37291, sync = True, waitForSettling = True)
17-03-18 01:17:03.820 -07 000000610 INF: Z Motor: Moving to -0.170707 mm, started at -0.177428 mm, distance = 6.72 um
17-03-18 01:17:03.820 -07 000000610 INF: FPGA: Xmit ZDACW 37291\n [Z Motor]
17-03-18 01:17:03.820 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:17:03.830 -07 000000610 INF: FPGA: 'ZDACW 37291' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:17:03.830 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:03.830 -07 000000625 INF: FPGA: Recv ZDACR 37291
17-03-18 01:17:03.840 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:03.840 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:17:03.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:03.990 -07 000000625 INF: FPGA: Recv ZSGSRD 35860
17-03-18 01:17:04.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:04.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:04.000 -07 000000424 INF: FPGA: Recv ZSGSRD 35862
17-03-18 01:17:04.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:04.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:04.010 -07 000000561 INF: FPGA: Recv ZSGSRD 35859
17-03-18 01:17:04.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:04.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:04.020 -07 000000561 INF: FPGA: Recv ZSGSRD 35863
17-03-18 01:17:04.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:04.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:04.030 -07 000000625 INF: FPGA: Recv ZSGSRD 35866
17-03-18 01:17:04.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:04.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:04.040 -07 000000618 INF: FPGA: Recv ZSGSRD 35866
17-03-18 01:17:04.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:04.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:04.050 -07 000000561 INF: FPGA: Recv ZSGSRD 35857
17-03-18 01:17:04.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:04.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:04.060 -07 000000561 INF: FPGA: Recv ZSGSRD 35862
17-03-18 01:17:04.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:04.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:04.070 -07 000000618 INF: FPGA: Recv ZSGSRD 35863
17-03-18 01:17:04.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:04.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:04.080 -07 000000625 INF: FPGA: Recv ZSGSRD 35869
17-03-18 01:17:04.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:04.090 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:04.090 -07 000000618 INF: FPGA: Recv ZPIEZORD 31593
17-03-18 01:17:04.100 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:04.100 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.690 V. Piezo Error = -9.4 V.
17-03-18 01:17:04.100 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35863 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35862 (-169.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35857 (-169.8 uncal um), Max = 35869 (-169.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:17:04.100 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35863, posNoise = 6, negNoise = 6
17-03-18 01:17:04.100 -07 000000610 INF: Z Motor: After move to -0.170707, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:04.100 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:17:04.100 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:04.100 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:04.100 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:04.100 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:04.100 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:17:04.100 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:17:04.100 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:17:04.100 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:04.100 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:17:04.100 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:17:04.100 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:04.100 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:17:04.110 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:17:04.110 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:17:04.110 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:17:04.110 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:17:04.120 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:17:04.120 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:17:04.120 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:17:04.120 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:17:04.130 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37467 150\n [Camera]
17-03-18 01:17:04.320 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:17:04.720 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:17:04.720 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:17:04.720 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:04.720 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:04.720 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:17:04.720 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:17:04.720 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:17:04.720 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:04.720 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:04.720 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:17:04.910 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37467 775
17-03-18 01:17:05.060 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:17:05.100 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 01:17:05.100 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 01:17:05.100 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:05.100 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:05.100 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:17:05.100 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:17:05.100 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:05.110 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:17:05.110 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:05.110 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:17:05.250 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:17:05.250 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:17:05.250 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:05.250 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:05.250 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:17:05.250 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:17:05.250 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:17:05.250 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:05.250 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:05.250 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 01:17:05.440 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:17:05.440 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:17:05.440 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37467 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:17:05.440 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:17:05.440 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.170714872051108. ------
17-03-18 01:17:05.440 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:05.440 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17697 mm
17-03-18 01:17:05.440 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:17:05.450 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:05.450 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-18 01:17:05.450 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:17:05.450 -07 000000618 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-18 01:17:05.450 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:05.450 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38659, sync = True, waitForSettling = False)
17-03-18 01:17:05.450 -07 000000461 INF: Z Motor: Moving to -0.176970 mm, started at -0.170715 mm, distance = -6.25 um
17-03-18 01:17:05.450 -07 000000501 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:17:05.460 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:17:05.460 -07 000000618 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:05.460 -07 000000461 INF: FPGA: Xmit ZDACW 38659\n [Z Motor]
17-03-18 01:17:05.460 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:17:05.460 -07 000000618 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:17:05.460 -07 000000618 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:17:05.470 -07 000000461 INF: FPGA: 'ZDACW 38659' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:17:05.470 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:17:05.480 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:17:05.490 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:05.490 -07 000000626 INF: FPGA: Recv ZDACR 38659
17-03-18 01:17:05.500 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:17:05.500 -07 000000461 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 01:17:05.650 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 01:17:05.650 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:17:05.650 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:05.650 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:17:05.650 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:17:05.650 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:05.660 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:05.660 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:17:05.660 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:17:05.660 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:17:05.670 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:17:05.670 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-18 01:17:05.850 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 01:17:05.850 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 01:17:05.900 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:05.900 -07 000000487 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:17:05.910 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:17:05.910 -07 000000618 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:05.910 -07 000000618 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:17:05.910 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.135 mm/sec
17-03-18 01:17:06.860 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:06.860 -07 000000611 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:17:06.870 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:06.870 -07 000000618 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:06.890 -07 000000618 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:17:06.890 -07 000000618 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:17:06.890 -07 000000618 INF: Y Motor: Moved to 62.3955 after 1442 ms (table move)
17-03-18 01:17:06.890 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176970 mm (DAC = 38659)
17-03-18 01:17:06.890 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:06.900 -07 000000626 INF: FPGA: Recv ZSGSRD 36845
17-03-18 01:17:06.900 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:17:06.910 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:06.910 -07 000000424 INF: FPGA: Recv ZSGSRD 36833
17-03-18 01:17:06.920 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:17:06.920 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:06.920 -07 000000502 INF: FPGA: Recv ZSGSRD 36837
17-03-18 01:17:06.930 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:06.930 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:06.930 -07 000000487 INF: FPGA: Recv ZSGSRD 36842
17-03-18 01:17:06.940 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:06.940 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:06.940 -07 000000467 INF: FPGA: Recv ZSGSRD 36840
17-03-18 01:17:06.950 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:06.950 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:06.950 -07 000000424 INF: FPGA: Recv ZSGSRD 36840
17-03-18 01:17:06.960 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:06.960 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:06.960 -07 000000502 INF: FPGA: Recv ZSGSRD 36834
17-03-18 01:17:06.970 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:06.970 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:06.970 -07 000000424 INF: FPGA: Recv ZSGSRD 36831
17-03-18 01:17:06.980 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:06.980 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:06.980 -07 000000467 INF: FPGA: Recv ZSGSRD 36840
17-03-18 01:17:06.990 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:06.990 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:06.990 -07 000000611 INF: FPGA: Recv ZSGSRD 36836
17-03-18 01:17:07.000 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:07.000 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:07.000 -07 000000611 INF: FPGA: Recv ZPIEZORD 32898
17-03-18 01:17:07.010 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:07.010 -07 000000569 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -8.7 V.
17-03-18 01:17:07.010 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36838 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36838 (-176.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36831 (-176.0 uncal um), Max = 36845 (-176.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:17:07.010 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36838, posNoise = 7, negNoise = 7
17-03-18 01:17:07.010 -07 000000569 INF: Z Motor: After move to -0.176970, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:07.010 -07 000000569 INF: Z Motor: Settle wait time = 1444 ms, measure time = 111 ms (allowed 150 ms), total time = 1555 ms
17-03-18 01:17:07.010 -07 000000569 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:17:07.050 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 01:17:07.050 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:17:07.050 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:07.050 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:07.050 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:07.050 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:07.060 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:17:07.060 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:07.060 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:07.060 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:17:07.060 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:17:07.060 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:17:07.070 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:17:07.070 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:17:07.080 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:17:07.120 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:17:07.220 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.026244,
17-03-18 01:17:07.250 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:17:07.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:17:07.420 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:17:07.420 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:17:07.420 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:17:07.420 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 01:17:07.460 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:17:07.460 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 01:17:07.460 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 3 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 01:17:07.540 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:17:07.540 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:07.540 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:17:07.540 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:17:07.560 -07 000000585 INF: Autofocus start
17-03-18 01:17:07.560 -07 000000585 INF: MeasureProfile start
17-03-18 01:17:07.570 -07 000000585 INF: MeasureProfile done
17-03-18 01:17:07.570 -07 000000585 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:17:07.570 -07 000000585 INF: Autofocus finished
17-03-18 01:17:07.580 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:07.580 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:07.590 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:17:07.590 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:17:07.790 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:17:07.790 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:17:07.790 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.176978478889325. ----------
17-03-18 01:17:07.790 -07 000000610 INF: Cycle	85	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:17:07.800 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37156, sync = True, waitForSettling = True)
17-03-18 01:17:07.800 -07 000000610 INF: Z Motor: Moving to -0.170089 mm, started at -0.176978 mm, distance = 6.89 um
17-03-18 01:17:07.800 -07 000000610 INF: FPGA: Xmit ZDACW 37156\n [Z Motor]
17-03-18 01:17:07.800 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:17:07.810 -07 000000610 INF: FPGA: 'ZDACW 37156' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:07.810 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:07.810 -07 000000625 INF: FPGA: Recv ZDACR 37156
17-03-18 01:17:07.820 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:07.820 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:17:07.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:07.970 -07 000000585 INF: FPGA: Recv ZSGSRD 35770
17-03-18 01:17:07.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:07.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:07.980 -07 000000626 INF: FPGA: Recv ZSGSRD 35765
17-03-18 01:17:07.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:07.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:07.990 -07 000000585 INF: FPGA: Recv ZSGSRD 35772
17-03-18 01:17:08.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:08.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:08.000 -07 000000618 INF: FPGA: Recv ZSGSRD 35769
17-03-18 01:17:08.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:08.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:08.010 -07 000000501 INF: FPGA: Recv ZSGSRD 35764
17-03-18 01:17:08.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:08.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:08.020 -07 000000561 INF: FPGA: Recv ZSGSRD 35769
17-03-18 01:17:08.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:08.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:08.030 -07 000000501 INF: FPGA: Recv ZSGSRD 35767
17-03-18 01:17:08.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:08.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:08.040 -07 000000618 INF: FPGA: Recv ZSGSRD 35773
17-03-18 01:17:08.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:08.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:08.050 -07 000000585 INF: FPGA: Recv ZSGSRD 35769
17-03-18 01:17:08.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:08.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:08.060 -07 000000561 INF: FPGA: Recv ZSGSRD 35765
17-03-18 01:17:08.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:08.070 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:08.070 -07 000000618 INF: FPGA: Recv ZPIEZORD 31465
17-03-18 01:17:08.080 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:08.080 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.670 V. Piezo Error = -9.5 V.
17-03-18 01:17:08.080 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35768 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35769 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35764 (-169.2 uncal um), Max = 35773 (-169.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:17:08.080 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35768, posNoise = 5, negNoise = 4
17-03-18 01:17:08.080 -07 000000610 INF: Z Motor: After move to -0.170089, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:08.080 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:17:08.080 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:08.080 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:08.080 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:08.080 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:17:08.080 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:08.080 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:17:08.080 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:17:08.080 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:17:08.080 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:17:08.080 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:08.080 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:17:08.080 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:17:08.080 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:17:08.080 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:17:08.080 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:17:08.090 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:17:08.090 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:17:08.090 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:17:08.100 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:17:08.100 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:17:08.100 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37333 150\n [Camera]
17-03-18 01:17:08.300 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:17:08.690 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:17:08.690 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:17:08.690 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:08.690 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:08.690 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:17:08.690 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:17:08.690 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:17:08.690 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:08.690 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:08.690 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 01:17:08.880 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37333 775
17-03-18 01:17:09.030 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:17:09.090 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:17:09.090 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:17:09.090 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:09.090 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:17:09.090 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:17:09.090 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:09.090 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:09.090 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:17:09.100 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:09.100 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:17:09.220 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:17:09.230 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:17:09.230 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:17:09.230 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:17:09.230 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:09.230 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:09.230 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:09.230 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 01:17:09.240 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:09.240 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 01:17:09.410 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:17:09.410 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:17:09.410 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37333 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-18 01:17:09.410 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:17:09.410 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.170104571897641. ------
17-03-18 01:17:09.420 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:09.420 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17669 mm
17-03-18 01:17:09.420 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:17:09.420 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:17:09.420 -07 000000611 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 01:17:09.420 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:09.420 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 38598, sync = True, waitForSettling = False)
17-03-18 01:17:09.420 -07 000000585 INF: Z Motor: Moving to -0.176690 mm, started at -0.170105 mm, distance = -6.59 um
17-03-18 01:17:09.430 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:17:09.430 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:09.430 -07 000000618 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:17:09.440 -07 000000585 INF: FPGA: Xmit ZDACW 38598\n [Z Motor]
17-03-18 01:17:09.440 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:17:09.440 -07 000000611 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:09.440 -07 000000611 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:17:09.440 -07 000000611 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:17:09.440 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:17:09.450 -07 000000585 INF: FPGA: 'ZDACW 38598' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:17:09.450 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:17:09.460 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:17:09.470 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:09.470 -07 000000487 INF: FPGA: Recv ZDACR 38598
17-03-18 01:17:09.480 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 01:17:09.480 -07 000000585 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 01:17:09.640 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 01:17:09.640 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:17:09.640 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:09.640 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 01:17:09.640 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:17:09.640 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:09.650 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:09.650 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:17:09.650 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:17:09.650 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:17:09.650 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 01:17:09.650 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 01:17:09.830 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 01:17:09.830 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:17:09.880 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:10.560 -07 000000501 INF: FPGA: Recv YRDPOS 129482
17-03-18 01:17:10.560 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 670 ms to get response, and 679 ms overall
17-03-18 01:17:10.560 -07 000000611 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:10.560 -07 000000611 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:17:10.560 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-18 01:17:11.510 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:11.510 -07 000000626 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:17:11.520 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:11.520 -07 000000611 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:11.540 -07 000000611 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:17:11.540 -07 000000611 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:17:11.540 -07 000000611 INF: Y Motor: Moved to 63.2241 after 2121 ms (table move)
17-03-18 01:17:11.550 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176690 mm (DAC = 38598)
17-03-18 01:17:11.550 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:11.550 -07 000000569 INF: FPGA: Recv ZSGSRD 36798
17-03-18 01:17:11.560 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:17:11.560 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:11.560 -07 000000618 INF: FPGA: Recv ZSGSRD 36796
17-03-18 01:17:11.570 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:11.570 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:11.570 -07 000000502 INF: FPGA: Recv ZSGSRD 36789
17-03-18 01:17:11.580 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:11.580 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:11.580 -07 000000569 INF: FPGA: Recv ZSGSRD 36792
17-03-18 01:17:11.590 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:11.590 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:11.590 -07 000000487 INF: FPGA: Recv ZSGSRD 36792
17-03-18 01:17:11.600 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:11.600 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:11.600 -07 000000626 INF: FPGA: Recv ZSGSRD 36794
17-03-18 01:17:11.610 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:11.610 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:11.610 -07 000000569 INF: FPGA: Recv ZSGSRD 36796
17-03-18 01:17:11.620 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:11.620 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:11.620 -07 000000626 INF: FPGA: Recv ZSGSRD 36794
17-03-18 01:17:11.630 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:11.630 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:11.630 -07 000000502 INF: FPGA: Recv ZSGSRD 36795
17-03-18 01:17:11.640 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:11.640 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:11.640 -07 000000626 INF: FPGA: Recv ZSGSRD 36790
17-03-18 01:17:11.650 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:11.650 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:11.650 -07 000000569 INF: FPGA: Recv ZPIEZORD 32847
17-03-18 01:17:11.660 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:11.660 -07 000000424 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.890 V. Piezo Error = -8.7 V.
17-03-18 01:17:11.660 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36794 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36794 (-175.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36789 (-175.8 uncal um), Max = 36798 (-175.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:17:11.660 -07 000000424 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36794, posNoise = 4, negNoise = 5
17-03-18 01:17:11.660 -07 000000424 INF: Z Motor: After move to -0.176690, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:11.660 -07 000000424 INF: Z Motor: Settle wait time = 2125 ms, measure time = 108 ms (allowed 150 ms), total time = 2233 ms
17-03-18 01:17:11.660 -07 000000424 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:17:11.710 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2286 ms
17-03-18 01:17:11.710 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:17:11.710 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:11.710 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:11.710 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:11.710 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:11.710 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:17:11.720 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:11.720 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:11.720 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:17:11.720 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:17:11.720 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:17:11.730 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:17:11.730 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:17:11.730 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:17:11.770 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:17:12.070 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:17:12.070 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:17:12.070 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:17:12.070 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) start.
17-03-18 01:17:12.110 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:17:12.110 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 01:17:12.110 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:17:12.200 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 01:17:12.200 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:12.200 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:17:12.200 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 01:17:12.210 -07 000000611 INF: Autofocus start
17-03-18 01:17:12.210 -07 000000611 INF: MeasureProfile start
17-03-18 01:17:12.210 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:12.210 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:12.220 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:17:12.220 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:17:12.220 -07 000000611 INF: MeasureProfile done
17-03-18 01:17:12.220 -07 000000611 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:17:12.220 -07 000000611 INF: Autofocus finished
17-03-18 01:17:12.250 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:17:12.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:17:12.420 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:17:12.420 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:17:12.420 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.176695813555088. ----------
17-03-18 01:17:12.420 -07 000000610 INF: Cycle	85	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:17:12.430 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37131, sync = True, waitForSettling = True)
17-03-18 01:17:12.430 -07 000000610 INF: Z Motor: Moving to -0.169975 mm, started at -0.176696 mm, distance = 6.72 um
17-03-18 01:17:12.430 -07 000000610 INF: FPGA: Xmit ZDACW 37131\n [Z Motor]
17-03-18 01:17:12.430 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:17:12.440 -07 000000610 INF: FPGA: 'ZDACW 37131' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:17:12.440 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:12.440 -07 000000618 INF: FPGA: Recv ZDACR 37131
17-03-18 01:17:12.450 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:12.450 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:17:12.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:12.600 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.039839,
17-03-18 01:17:12.600 -07 000000618 INF: FPGA: Recv ZSGSRD 35752
17-03-18 01:17:12.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:12.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:12.610 -07 000000569 INF: FPGA: Recv ZSGSRD 35748
17-03-18 01:17:12.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:12.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:12.630 -07 000000611 INF: FPGA: Recv ZSGSRD 35753
17-03-18 01:17:12.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:17:12.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:12.640 -07 000000585 INF: FPGA: Recv ZSGSRD 35749
17-03-18 01:17:12.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:12.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:12.660 -07 000000487 INF: FPGA: Recv ZSGSRD 35740
17-03-18 01:17:12.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:17:12.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:12.670 -07 000000569 INF: FPGA: Recv ZSGSRD 35745
17-03-18 01:17:12.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:12.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:12.700 -07 000000618 INF: FPGA: Recv ZSGSRD 35754
17-03-18 01:17:12.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:17:12.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:12.710 -07 000000502 INF: FPGA: Recv ZSGSRD 35747
17-03-18 01:17:12.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:12.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:12.720 -07 000000618 INF: FPGA: Recv ZSGSRD 35747
17-03-18 01:17:12.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:12.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:12.730 -07 000000424 INF: FPGA: Recv ZSGSRD 35752
17-03-18 01:17:12.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:12.740 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:12.740 -07 000000487 INF: FPGA: Recv ZPIEZORD 31415
17-03-18 01:17:12.750 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:12.750 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -9.5 V.
17-03-18 01:17:12.750 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35749 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35748 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35740 (-169.1 uncal um), Max = 35754 (-169.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:17:12.750 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35749, posNoise = 5, negNoise = 9
17-03-18 01:17:12.750 -07 000000610 INF: Z Motor: After move to -0.169975, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:12.750 -07 000000610 INF: Z Motor: MoveAbsStepped took 319 ms)
17-03-18 01:17:12.750 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:12.750 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:12.750 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:12.750 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:12.750 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:17:12.750 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:17:12.750 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:12.750 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:17:12.750 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:12.750 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:17:12.750 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:17:12.750 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:17:12.760 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:17:12.760 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:17:12.760 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:17:12.760 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:17:12.770 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:17:12.770 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:17:12.770 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:17:12.770 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:17:12.780 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37307 150\n [Camera]
17-03-18 01:17:12.980 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:17:13.370 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:17:13.370 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:17:13.370 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:13.370 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:13.370 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 01:17:13.370 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:17:13.370 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:17:13.370 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:13.370 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:13.370 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 01:17:13.560 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37307 775
17-03-18 01:17:13.710 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:17:13.770 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:17:13.770 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:17:13.770 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:13.770 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:13.770 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:17:13.770 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:17:13.770 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:17:13.770 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:13.780 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:13.780 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:17:13.900 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:17:13.900 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:17:13.900 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:14.030 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:17:14.030 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:17:14.040 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:14.040 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:14.040 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:14.040 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:17:14.040 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:17:14.090 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:17:14.090 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:17:14.090 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37307 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-18 01:17:14.090 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:17:14.090 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.169982511866947. ------
17-03-18 01:17:14.090 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:14.090 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17645 mm
17-03-18 01:17:14.090 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:17:14.100 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:17:14.100 -07 000000618 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 01:17:14.100 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:14.100 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38546, sync = True, waitForSettling = False)
17-03-18 01:17:14.100 -07 000000424 INF: Z Motor: Moving to -0.176452 mm, started at -0.169983 mm, distance = -6.47 um
17-03-18 01:17:14.100 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:14.100 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:17:14.100 -07 000000461 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:17:14.110 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:14.110 -07 000000618 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:14.110 -07 000000618 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:17:14.110 -07 000000618 INF: Y Motor: Moving 1342 steps-18
17-03-18 01:17:14.110 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:17:14.120 -07 000000424 INF: FPGA: Xmit ZDACW 38546\n [Z Motor]
17-03-18 01:17:14.120 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:17:14.130 -07 000000424 INF: FPGA: 'ZDACW 38546' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:17:14.130 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:17:14.140 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:14.140 -07 000000626 INF: FPGA: Recv ZDACR 38546
17-03-18 01:17:14.150 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:17:14.150 -07 000000424 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 01:17:14.310 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:17:14.310 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 197 ms to get response, and 215 ms overall
17-03-18 01:17:14.430 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 01:17:14.430 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:17:14.430 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:14.440 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:17:14.440 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:17:14.440 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:14.440 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:14.440 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:14.440 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 542 ms.
17-03-18 01:17:14.440 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:17:14.510 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 01:17:14.510 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 01:17:14.550 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:14.550 -07 000000461 INF: FPGA: Recv YRDPOS 131188
17-03-18 01:17:14.560 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:17:14.560 -07 000000618 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:14.560 -07 000000618 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 01:17:14.560 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.096 mm/sec
17-03-18 01:17:15.510 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:15.510 -07 000000585 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:17:15.520 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:15.520 -07 000000618 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:15.540 -07 000000618 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:17:15.540 -07 000000618 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:17:15.540 -07 000000618 INF: Y Motor: Moved to 64.0571 after 1443 ms (table move)
17-03-18 01:17:15.540 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176452 mm (DAC = 38546)
17-03-18 01:17:15.540 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:15.550 -07 000000502 INF: FPGA: Recv ZSGSRD 36753
17-03-18 01:17:15.550 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-18 01:17:15.550 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:15.550 -07 000000502 INF: FPGA: Recv ZSGSRD 36756
17-03-18 01:17:15.560 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:17:15.560 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:15.560 -07 000000502 INF: FPGA: Recv ZSGSRD 36755
17-03-18 01:17:15.570 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:15.570 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:15.570 -07 000000487 INF: FPGA: Recv ZSGSRD 36753
17-03-18 01:17:15.580 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:15.580 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:15.580 -07 000000569 INF: FPGA: Recv ZSGSRD 36755
17-03-18 01:17:15.590 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:15.590 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:15.590 -07 000000569 INF: FPGA: Recv ZSGSRD 36760
17-03-18 01:17:15.600 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:15.600 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:15.600 -07 000000585 INF: FPGA: Recv ZSGSRD 36759
17-03-18 01:17:15.610 -07 000000611 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:15.610 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:15.610 -07 000000585 INF: FPGA: Recv ZSGSRD 36760
17-03-18 01:17:15.620 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:15.620 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:15.620 -07 000000585 INF: FPGA: Recv ZSGSRD 36752
17-03-18 01:17:15.630 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:15.630 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:15.630 -07 000000585 INF: FPGA: Recv ZSGSRD 36751
17-03-18 01:17:15.640 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:15.640 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:15.640 -07 000000585 INF: FPGA: Recv ZPIEZORD 32779
17-03-18 01:17:15.650 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:15.650 -07 000000611 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.882 V. Piezo Error = -8.8 V.
17-03-18 01:17:15.650 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36755 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36755 (-175.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36751 (-175.5 uncal um), Max = 36760 (-175.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:17:15.650 -07 000000611 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36755, posNoise = 5, negNoise = 4
17-03-18 01:17:15.650 -07 000000611 INF: Z Motor: After move to -0.176452, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:15.650 -07 000000611 INF: Z Motor: Settle wait time = 1446 ms, measure time = 103 ms (allowed 150 ms), total time = 1549 ms
17-03-18 01:17:15.650 -07 000000611 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 01:17:15.700 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 01:17:15.700 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:17:15.700 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:15.700 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:15.700 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:15.700 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:15.700 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:17:15.700 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:15.700 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:17:15.700 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:17:15.710 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:17:15.710 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:17:15.710 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:17:15.710 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:17:15.720 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:17:15.760 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:17:16.060 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:17:16.060 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:17:16.060 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:17:16.060 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:17:16.100 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:17:16.100 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 01:17:16.100 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:17:16.180 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:17:16.180 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:16.180 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:17:16.180 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 01:17:16.200 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:16.200 -07 000000461 INF: Autofocus start
17-03-18 01:17:16.200 -07 000000461 INF: MeasureProfile start
17-03-18 01:17:16.200 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:16.210 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:17:16.210 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:17:16.210 -07 000000461 INF: MeasureProfile done
17-03-18 01:17:16.210 -07 000000461 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:17:16.210 -07 000000461 INF: Autofocus finished
17-03-18 01:17:16.410 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:17:16.410 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:17:16.410 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.176445269281559. ----------
17-03-18 01:17:16.410 -07 000000610 INF: Cycle	85	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:17:16.420 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37043, sync = True, waitForSettling = True)
17-03-18 01:17:16.420 -07 000000610 INF: Z Motor: Moving to -0.169572 mm, started at -0.176445 mm, distance = 6.87 um
17-03-18 01:17:16.420 -07 000000610 INF: FPGA: Xmit ZDACW 37043\n [Z Motor]
17-03-18 01:17:16.420 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:17:16.430 -07 000000610 INF: FPGA: 'ZDACW 37043' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:17:16.430 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:16.430 -07 000000474 INF: FPGA: Recv ZDACR 37043
17-03-18 01:17:16.440 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:16.440 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:17:16.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:16.590 -07 000000569 INF: FPGA: Recv ZSGSRD 35682
17-03-18 01:17:16.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:16.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:16.600 -07 000000618 INF: FPGA: Recv ZSGSRD 35691
17-03-18 01:17:16.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:16.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:16.610 -07 000000611 INF: FPGA: Recv ZSGSRD 35686
17-03-18 01:17:16.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:16.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:16.620 -07 000000618 INF: FPGA: Recv ZSGSRD 35685
17-03-18 01:17:16.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:16.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:16.630 -07 000000467 INF: FPGA: Recv ZSGSRD 35686
17-03-18 01:17:16.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:16.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:16.640 -07 000000569 INF: FPGA: Recv ZSGSRD 35692
17-03-18 01:17:16.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:16.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:16.650 -07 000000625 INF: FPGA: Recv ZSGSRD 35689
17-03-18 01:17:16.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:16.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:16.660 -07 000000474 INF: FPGA: Recv ZSGSRD 35681
17-03-18 01:17:16.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:16.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:16.670 -07 000000618 INF: FPGA: Recv ZSGSRD 35685
17-03-18 01:17:16.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:16.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:16.680 -07 000000474 INF: FPGA: Recv ZSGSRD 35685
17-03-18 01:17:16.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:16.690 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:16.690 -07 000000618 INF: FPGA: Recv ZPIEZORD 31353
17-03-18 01:17:16.700 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:16.700 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -9.5 V.
17-03-18 01:17:16.700 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35686 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35686 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35681 (-168.7 uncal um), Max = 35692 (-168.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:17:16.700 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35686, posNoise = 6, negNoise = 5
17-03-18 01:17:16.700 -07 000000610 INF: Z Motor: After move to -0.169572, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:16.700 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:17:16.700 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:16.700 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:16.700 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:16.700 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:17:16.700 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:16.700 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:16.700 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:17:16.700 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:17:16.700 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:17:16.700 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:17:16.700 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 01:17:16.700 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:17:16.710 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:17:16.710 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:17:16.710 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:17:16.710 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:17:16.720 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:17:16.720 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:17:16.720 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:17:16.720 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:17:16.730 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37219 150\n [Camera]
17-03-18 01:17:16.930 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:17:17.240 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:17:17.240 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:17:17.320 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:17:17.320 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:17:17.320 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:17.320 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:17:17.320 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:17:17.320 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:17.440 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:17.440 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:17:17.440 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:17.440 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:17:17.510 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37219 775
17-03-18 01:17:17.660 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:17:17.830 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:17:17.830 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:17:17.830 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:17.830 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:17:17.830 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:17:17.830 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:17.830 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:17.830 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 01:17:17.840 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:17.840 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 523 ms.
17-03-18 01:17:17.850 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:17:17.850 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:17:17.850 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:17.850 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:17:17.850 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:17:17.850 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:17.860 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:17.860 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:17:17.860 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:17.860 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:17:18.020 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.03576,
17-03-18 01:17:18.040 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:17:18.040 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:17:18.040 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37219 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-18 01:17:18.040 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:17:18.040 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.169577786502016. ------
17-03-18 01:17:18.050 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17596 mm
17-03-18 01:17:18.050 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:17:18.050 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:17:18.050 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 38439, sync = True, waitForSettling = False)
17-03-18 01:17:18.050 -07 000000611 INF: Z Motor: Moving to -0.175962 mm, started at -0.169578 mm, distance = -6.38 um
17-03-18 01:17:18.050 -07 000000561 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 01:17:18.060 -07 000000611 INF: FPGA: Xmit ZDACW 38439\n [Z Motor]
17-03-18 01:17:18.060 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:17:18.070 -07 000000611 INF: FPGA: 'ZDACW 38439' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:17:18.070 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:18.070 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:18.080 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:17:18.080 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:18.080 -07 000000501 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:17:18.090 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-18 01:17:18.090 -07 000000561 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:18.090 -07 000000561 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:17:18.090 -07 000000561 INF: Y Motor: Moving 1337 steps-12
17-03-18 01:17:18.090 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:18.090 -07 000000626 INF: FPGA: Recv ZDACR 38439
17-03-18 01:17:18.100 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:17:18.100 -07 000000611 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:17:18.100 -07 000000611 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 01:17:18.110 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:17:18.250 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:17:18.250 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:17:18.250 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:18.260 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:17:18.260 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:17:18.260 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:18.260 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:18.260 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:17:18.260 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:18.270 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:17:18.300 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:17:18.300 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:17:18.480 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 01:17:18.480 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:17:18.520 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:18.530 -07 000000626 INF: FPGA: Recv YRDPOS 132871
17-03-18 01:17:18.530 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:17:18.530 -07 000000561 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:18.530 -07 000000561 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:17:18.530 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-18 01:17:19.480 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:19.480 -07 000000625 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:17:19.490 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:19.490 -07 000000561 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:19.510 -07 000000561 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:17:19.510 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:17:19.510 -07 000000561 INF: Y Motor: Moved to 64.8789 after 1462 ms (table move)
17-03-18 01:17:19.520 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175962 mm (DAC = 38439)
17-03-18 01:17:19.520 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:19.520 -07 000000618 INF: FPGA: Recv ZSGSRD 36682
17-03-18 01:17:19.530 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:19.530 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:19.530 -07 000000424 INF: FPGA: Recv ZSGSRD 36675
17-03-18 01:17:19.540 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:19.540 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:19.540 -07 000000626 INF: FPGA: Recv ZSGSRD 36672
17-03-18 01:17:19.550 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:19.550 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:19.550 -07 000000424 INF: FPGA: Recv ZSGSRD 36678
17-03-18 01:17:19.560 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:19.560 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:19.560 -07 000000626 INF: FPGA: Recv ZSGSRD 36684
17-03-18 01:17:19.570 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:19.570 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:19.570 -07 000000626 INF: FPGA: Recv ZSGSRD 36686
17-03-18 01:17:19.580 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:19.580 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:19.580 -07 000000611 INF: FPGA: Recv ZSGSRD 36683
17-03-18 01:17:19.590 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:19.590 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:19.590 -07 000000611 INF: FPGA: Recv ZSGSRD 36680
17-03-18 01:17:19.600 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:19.600 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:19.600 -07 000000625 INF: FPGA: Recv ZSGSRD 36682
17-03-18 01:17:19.610 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:19.610 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:19.610 -07 000000611 INF: FPGA: Recv ZSGSRD 36669
17-03-18 01:17:19.620 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:19.620 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:19.620 -07 000000625 INF: FPGA: Recv ZPIEZORD 32707
17-03-18 01:17:19.630 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:19.630 -07 000000569 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.865 V. Piezo Error = -8.8 V.
17-03-18 01:17:19.630 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36679 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36681 (-175.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36669 (-175.0 uncal um), Max = 36686 (-175.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:17:19.630 -07 000000569 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36679, posNoise = 7, negNoise = 10
17-03-18 01:17:19.630 -07 000000569 INF: Z Motor: After move to -0.175962, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:19.630 -07 000000569 INF: Z Motor: Settle wait time = 1465 ms, measure time = 110 ms (allowed 150 ms), total time = 1575 ms
17-03-18 01:17:19.630 -07 000000569 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:17:19.670 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 01:17:19.670 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:17:19.670 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:19.670 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:19.670 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:19.670 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:19.670 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:17:19.670 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:19.670 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:19.670 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:17:19.680 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:17:19.680 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:17:19.690 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:17:19.690 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:17:19.690 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:17:19.730 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:17:20.030 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:17:20.030 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:17:20.040 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:17:20.040 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-18 01:17:20.070 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:17:20.070 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:17:20.070 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:17:20.160 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 01:17:20.160 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:20.160 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:17:20.160 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 01:17:20.270 -07 000000561 INF: Autofocus start
17-03-18 01:17:20.270 -07 000000561 INF: MeasureProfile start
17-03-18 01:17:20.270 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:20.270 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:20.280 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:17:20.280 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:17:20.280 -07 000000561 INF: MeasureProfile done
17-03-18 01:17:20.280 -07 000000561 INF: X=-80  Z correction [um]=-0.4885566
17-03-18 01:17:20.280 -07 000000561 INF: Autofocus finished
17-03-18 01:17:20.480 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:17:20.480 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 01:17:20.490 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.175957029158785. ----------
17-03-18 01:17:20.490 -07 000000610 INF: Cycle	85	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:17:20.490 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36844, sync = True, waitForSettling = True)
17-03-18 01:17:20.490 -07 000000610 INF: Z Motor: Moving to -0.168661 mm, started at -0.175957 mm, distance = 7.30 um
17-03-18 01:17:20.490 -07 000000610 INF: FPGA: Xmit ZDACW 36844\n [Z Motor]
17-03-18 01:17:20.490 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:17:20.500 -07 000000610 INF: FPGA: 'ZDACW 36844' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:17:20.500 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:20.500 -07 000000569 INF: FPGA: Recv ZDACR 36844
17-03-18 01:17:20.510 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:20.510 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:17:20.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:20.660 -07 000000611 INF: FPGA: Recv ZSGSRD 35548
17-03-18 01:17:20.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:20.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:20.670 -07 000000467 INF: FPGA: Recv ZSGSRD 35546
17-03-18 01:17:20.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:20.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:20.680 -07 000000467 INF: FPGA: Recv ZSGSRD 35546
17-03-18 01:17:20.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:20.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:20.690 -07 000000467 INF: FPGA: Recv ZSGSRD 35546
17-03-18 01:17:20.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:20.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:20.700 -07 000000424 INF: FPGA: Recv ZSGSRD 35541
17-03-18 01:17:20.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:20.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:20.710 -07 000000625 INF: FPGA: Recv ZSGSRD 35544
17-03-18 01:17:20.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:20.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:20.720 -07 000000561 INF: FPGA: Recv ZSGSRD 35545
17-03-18 01:17:20.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:20.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:20.730 -07 000000625 INF: FPGA: Recv ZSGSRD 35548
17-03-18 01:17:20.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:20.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:20.740 -07 000000569 INF: FPGA: Recv ZSGSRD 35541
17-03-18 01:17:20.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:20.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:20.750 -07 000000626 INF: FPGA: Recv ZSGSRD 35543
17-03-18 01:17:20.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:20.760 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:20.760 -07 000000569 INF: FPGA: Recv ZPIEZORD 31198
17-03-18 01:17:20.770 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:20.770 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -9.6 V.
17-03-18 01:17:20.770 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35545 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35546 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35541 (-167.8 uncal um), Max = 35548 (-167.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:17:20.770 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35545, posNoise = 3, negNoise = 4
17-03-18 01:17:20.770 -07 000000610 INF: Z Motor: After move to -0.168661, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:20.770 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:17:20.770 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:20.770 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:20.770 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:20.770 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:17:20.770 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:17:20.770 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:17:20.770 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:20.770 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:17:20.770 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:17:20.770 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:20.770 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:17:20.770 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:20.770 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:17:20.770 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:17:20.770 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:17:20.770 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:17:20.780 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:17:20.780 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:17:20.780 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:17:20.780 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:17:20.790 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37021 150\n [Camera]
17-03-18 01:17:20.990 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:17:21.380 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:17:21.380 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:17:21.380 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:21.380 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:21.380 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:17:21.380 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:17:21.380 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:17:21.380 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:21.380 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:21.380 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:17:21.570 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37021 775
17-03-18 01:17:21.720 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:17:21.780 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:17:21.780 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:17:21.780 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:21.780 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:17:21.780 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:17:21.780 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:21.780 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:21.780 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:17:21.780 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:21.790 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:17:21.910 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:17:21.910 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:17:21.910 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:21.910 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:21.910 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:17:21.910 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:17:21.910 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:17:21.910 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:21.910 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:21.910 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:17:22.100 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:17:22.100 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:17:22.100 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37021 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-18 01:17:22.100 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:17:22.100 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.168671972590028. ------
17-03-18 01:17:22.110 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17526 mm
17-03-18 01:17:22.110 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:17:22.110 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:22.110 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:17:22.110 -07 000000561 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 01:17:22.110 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38286, sync = True, waitForSettling = False)
17-03-18 01:17:22.110 -07 000000467 INF: Z Motor: Moving to -0.175262 mm, started at -0.168672 mm, distance = -6.59 um
17-03-18 01:17:22.120 -07 000000467 INF: FPGA: Xmit ZDACW 38286\n [Z Motor]
17-03-18 01:17:22.130 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:22.310 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:17:22.320 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:17:22.320 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:22.320 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:17:22.320 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:17:22.320 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:22.320 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:22.320 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 01:17:22.320 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:22.330 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:17:22.330 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:22.330 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:17:22.330 -07 000000569 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:17:22.330 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 219 ms to get response, and 226 ms overall
17-03-18 01:17:22.330 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 199 ms to get response, and 224 ms overall
17-03-18 01:17:22.330 -07 000000467 INF: FPGA: 'ZDACW 38286' command took 0 ms to send, 209 ms to get response, and 224 ms overall
17-03-18 01:17:22.340 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:17:22.340 -07 000000561 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:22.340 -07 000000561 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:17:22.340 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:17:22.340 -07 000000561 INF: Y Motor: Moving 1350 steps-29
17-03-18 01:17:22.340 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:17:22.350 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:17:22.360 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:22.360 -07 000000424 INF: FPGA: Recv ZDACR 38286
17-03-18 01:17:22.370 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:17:22.370 -07 000000467 INF: Z Motor: MoveAbsStepped took 255 ms (did NOT wait for settling yet))
17-03-18 01:17:22.540 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:17:22.540 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 01:17:22.720 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 01:17:22.720 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-18 01:17:22.770 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:22.770 -07 000000467 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:17:22.780 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:17:22.780 -07 000000561 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:22.780 -07 000000561 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:17:22.780 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-18 01:17:23.380 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.027603,
17-03-18 01:17:23.730 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:23.730 -07 000000626 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:17:23.740 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:23.740 -07 000000561 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:23.770 -07 000000561 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:17:23.770 -07 000000561 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:17:23.770 -07 000000561 INF: Y Motor: Moved to 65.7139 after 1658 ms (table move)
17-03-18 01:17:23.770 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175262 mm (DAC = 38286)
17-03-18 01:17:23.770 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:23.770 -07 000000501 INF: FPGA: Recv ZSGSRD 36576
17-03-18 01:17:23.780 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:17:23.780 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:23.780 -07 000000487 INF: FPGA: Recv ZSGSRD 36582
17-03-18 01:17:23.790 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:23.790 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:23.790 -07 000000487 INF: FPGA: Recv ZSGSRD 36575
17-03-18 01:17:23.800 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:23.800 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:23.800 -07 000000467 INF: FPGA: Recv ZSGSRD 36565
17-03-18 01:17:23.810 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:23.810 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:23.810 -07 000000474 INF: FPGA: Recv ZSGSRD 36573
17-03-18 01:17:23.820 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:23.820 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:23.820 -07 000000467 INF: FPGA: Recv ZSGSRD 36569
17-03-18 01:17:23.830 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:23.830 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:23.830 -07 000000467 INF: FPGA: Recv ZSGSRD 36574
17-03-18 01:17:23.840 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:23.840 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:23.840 -07 000000467 INF: FPGA: Recv ZSGSRD 36573
17-03-18 01:17:23.850 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:23.850 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:23.850 -07 000000467 INF: FPGA: Recv ZSGSRD 36574
17-03-18 01:17:23.860 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:23.860 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:23.860 -07 000000467 INF: FPGA: Recv ZSGSRD 36580
17-03-18 01:17:23.870 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:23.870 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:23.870 -07 000000467 INF: FPGA: Recv ZPIEZORD 32591
17-03-18 01:17:23.880 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:23.880 -07 000000618 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.8 V.
17-03-18 01:17:23.880 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36574 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36574 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36565 (-174.3 uncal um), Max = 36582 (-174.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:17:23.880 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36574, posNoise = 8, negNoise = 9
17-03-18 01:17:23.880 -07 000000618 INF: Z Motor: After move to -0.175262, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:23.880 -07 000000618 INF: Z Motor: Settle wait time = 1661 ms, measure time = 104 ms (allowed 150 ms), total time = 1765 ms
17-03-18 01:17:23.880 -07 000000618 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 01:17:23.930 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1817 ms
17-03-18 01:17:23.930 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:17:23.930 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:23.930 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:23.930 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:17:23.930 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:23.930 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:23.930 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:23.930 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:23.930 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:17:23.940 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:17:23.940 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:17:23.940 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:17:23.940 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:17:23.950 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:17:23.990 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:17:24.290 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:17:24.290 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:17:24.290 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:17:24.300 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2617114384, 0x0, 559484976) start.
17-03-18 01:17:24.330 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:17:24.330 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 01:17:24.330 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 01:17:24.410 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2617114384, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:17:24.410 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:24.410 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:17:24.410 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:17:24.430 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:24.430 -07 000000501 INF: Autofocus start
17-03-18 01:17:24.430 -07 000000501 INF: MeasureProfile start
17-03-18 01:17:24.430 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:24.440 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:17:24.440 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:17:24.440 -07 000000501 INF: MeasureProfile done
17-03-18 01:17:24.440 -07 000000501 INF: X=48  Z correction [um]=0.1739867
17-03-18 01:17:24.440 -07 000000501 INF: Autofocus finished
17-03-18 01:17:24.640 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:17:24.640 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 01:17:24.650 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.1752824868839. ----------
17-03-18 01:17:24.650 -07 000000610 INF: Cycle	85	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:17:24.650 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36837, sync = True, waitForSettling = True)
17-03-18 01:17:24.650 -07 000000610 INF: Z Motor: Moving to -0.168629 mm, started at -0.175282 mm, distance = 6.65 um
17-03-18 01:17:24.650 -07 000000610 INF: FPGA: Xmit ZDACW 36837\n [Z Motor]
17-03-18 01:17:24.650 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:17:24.660 -07 000000610 INF: FPGA: 'ZDACW 36837' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:17:24.660 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:24.660 -07 000000618 INF: FPGA: Recv ZDACR 36837
17-03-18 01:17:24.670 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:24.670 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:17:24.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:24.820 -07 000000618 INF: FPGA: Recv ZSGSRD 35542
17-03-18 01:17:24.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:24.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:24.830 -07 000000626 INF: FPGA: Recv ZSGSRD 35543
17-03-18 01:17:24.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:24.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:24.840 -07 000000618 INF: FPGA: Recv ZSGSRD 35541
17-03-18 01:17:24.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:24.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:24.850 -07 000000626 INF: FPGA: Recv ZSGSRD 35538
17-03-18 01:17:24.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:24.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:24.860 -07 000000585 INF: FPGA: Recv ZSGSRD 35540
17-03-18 01:17:24.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:24.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:24.870 -07 000000626 INF: FPGA: Recv ZSGSRD 35542
17-03-18 01:17:24.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:24.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:24.880 -07 000000585 INF: FPGA: Recv ZSGSRD 35539
17-03-18 01:17:24.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:24.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:24.890 -07 000000626 INF: FPGA: Recv ZSGSRD 35539
17-03-18 01:17:24.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:24.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:24.900 -07 000000585 INF: FPGA: Recv ZSGSRD 35537
17-03-18 01:17:24.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:24.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:24.910 -07 000000618 INF: FPGA: Recv ZSGSRD 35539
17-03-18 01:17:24.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:24.920 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:24.920 -07 000000502 INF: FPGA: Recv ZPIEZORD 31179
17-03-18 01:17:24.930 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:24.930 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.6 V.
17-03-18 01:17:24.930 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35540 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35540 (-167.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35537 (-167.7 uncal um), Max = 35543 (-167.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:17:24.930 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35540, posNoise = 3, negNoise = 3
17-03-18 01:17:24.930 -07 000000610 INF: Z Motor: After move to -0.168629, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:24.930 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:17:24.930 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:24.930 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:24.930 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:24.930 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:24.930 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:17:24.930 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:17:24.930 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:17:24.930 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:24.930 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:17:24.930 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:17:24.930 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:24.930 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:17:24.930 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:17:24.940 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:17:24.940 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:17:24.940 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:17:24.940 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:17:24.940 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:17:24.950 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:17:24.950 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:17:24.950 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37013 150\n [Camera]
17-03-18 01:17:25.150 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 01:17:25.540 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:17:25.540 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:17:25.540 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:25.540 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:25.540 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:17:25.540 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:17:25.540 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:17:25.540 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:25.540 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:25.540 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:17:25.730 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37013 775
17-03-18 01:17:25.880 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:17:25.930 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 01:17:25.930 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 01:17:25.930 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:25.930 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:25.940 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:17:25.940 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:17:25.940 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:17:25.940 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:25.940 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:25.940 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:17:26.070 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:17:26.070 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:17:26.070 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:26.070 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:26.070 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:17:26.070 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:17:26.070 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:17:26.070 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:26.070 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:26.070 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:17:26.260 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:17:26.260 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:17:26.260 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37013 150' command took 4 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-18 01:17:26.260 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:17:26.260 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.168639851529319. ------
17-03-18 01:17:26.380 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:26.380 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17498 mm
17-03-18 01:17:26.380 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:17:26.390 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:26.390 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:17:26.390 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:17:26.390 -07 000000461 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-18 01:17:26.390 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38224, sync = True, waitForSettling = False)
17-03-18 01:17:26.390 -07 000000618 INF: Z Motor: Moving to -0.174978 mm, started at -0.168640 mm, distance = -6.34 um
17-03-18 01:17:26.390 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:17:26.400 -07 000000618 INF: FPGA: Xmit ZDACW 38224\n [Z Motor]
17-03-18 01:17:26.400 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:17:26.410 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:26.410 -07 000000618 INF: FPGA: 'ZDACW 38224' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:17:26.410 -07 000000474 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:17:26.420 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:17:26.420 -07 000000461 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:26.420 -07 000000461 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:17:26.420 -07 000000461 INF: Y Motor: Moving 1342 steps-18
17-03-18 01:17:26.420 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:26.420 -07 000000626 INF: FPGA: Recv ZDACR 38224
17-03-18 01:17:26.430 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:17:26.430 -07 000000618 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 01:17:26.430 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:17:26.470 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:17:26.470 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:17:26.470 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:26.470 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:17:26.470 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:17:26.470 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:26.480 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:26.480 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:17:26.480 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:17:26.480 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:17:26.590 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:17:26.590 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 01:17:26.800 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 01:17:26.800 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:17:26.850 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:26.850 -07 000000467 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:17:26.860 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:26.860 -07 000000461 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:26.860 -07 000000461 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:17:26.860 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.162 mm/sec
17-03-18 01:17:27.240 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:17:27.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:17:27.810 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:27.810 -07 000000487 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:17:27.820 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:27.820 -07 000000461 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:27.840 -07 000000461 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:17:27.840 -07 000000461 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:17:27.840 -07 000000461 INF: Y Motor: Moved to 66.5391 after 1456 ms (table move)
17-03-18 01:17:27.850 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174978 mm (DAC = 38224)
17-03-18 01:17:27.850 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:27.850 -07 000000467 INF: FPGA: Recv ZSGSRD 36528
17-03-18 01:17:27.860 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:17:27.860 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:27.860 -07 000000467 INF: FPGA: Recv ZSGSRD 36520
17-03-18 01:17:27.870 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:27.870 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:27.870 -07 000000461 INF: FPGA: Recv ZSGSRD 36536
17-03-18 01:17:27.880 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:27.880 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:27.880 -07 000000461 INF: FPGA: Recv ZSGSRD 36535
17-03-18 01:17:27.890 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:27.890 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:27.890 -07 000000467 INF: FPGA: Recv ZSGSRD 36528
17-03-18 01:17:27.900 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:27.900 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:27.900 -07 000000487 INF: FPGA: Recv ZSGSRD 36531
17-03-18 01:17:27.910 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:27.910 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:27.910 -07 000000467 INF: FPGA: Recv ZSGSRD 36528
17-03-18 01:17:27.920 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:27.920 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:27.920 -07 000000461 INF: FPGA: Recv ZSGSRD 36527
17-03-18 01:17:27.930 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:27.930 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:27.930 -07 000000467 INF: FPGA: Recv ZSGSRD 36524
17-03-18 01:17:27.940 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:27.940 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:27.940 -07 000000487 INF: FPGA: Recv ZSGSRD 36530
17-03-18 01:17:27.950 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:27.950 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:27.950 -07 000000487 INF: FPGA: Recv ZPIEZORD 32497
17-03-18 01:17:27.960 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:27.960 -07 000000502 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.833 V. Piezo Error = -8.9 V.
17-03-18 01:17:27.960 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36529 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36528 (-174.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36520 (-174.0 uncal um), Max = 36536 (-174.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:17:27.960 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36529, posNoise = 7, negNoise = 9
17-03-18 01:17:27.960 -07 000000502 INF: Z Motor: After move to -0.174978, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:27.960 -07 000000502 INF: Z Motor: Settle wait time = 1460 ms, measure time = 108 ms (allowed 150 ms), total time = 1568 ms
17-03-18 01:17:27.960 -07 000000502 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:17:28.010 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 01:17:28.010 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:17:28.010 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:28.010 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:28.010 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:28.010 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:28.010 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:17:28.010 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:28.010 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:28.010 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:17:28.020 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:17:28.020 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:17:28.030 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:17:28.030 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:17:28.030 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:17:28.080 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:17:28.380 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:17:28.380 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:17:28.380 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:17:28.380 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 01:17:28.420 -07 000000502 INF: FPGA: Recv @CAMSNAP 381
17-03-18 01:17:28.420 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:17:28.420 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 386 ms overall
17-03-18 01:17:28.490 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 01:17:28.490 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:28.490 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:17:28.490 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 01:17:28.520 -07 000000487 INF: Autofocus start
17-03-18 01:17:28.520 -07 000000487 INF: MeasureProfile start
17-03-18 01:17:28.520 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:28.520 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:28.530 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:17:28.530 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:17:28.530 -07 000000487 INF: MeasureProfile done
17-03-18 01:17:28.530 -07 000000487 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:17:28.530 -07 000000487 INF: Autofocus finished
17-03-18 01:17:28.730 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:17:28.730 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:17:28.730 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.174993397337521. ----------
17-03-18 01:17:28.730 -07 000000610 INF: Cycle	85	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:17:28.740 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36739, sync = True, waitForSettling = True)
17-03-18 01:17:28.740 -07 000000610 INF: Z Motor: Moving to -0.168180 mm, started at -0.174993 mm, distance = 6.81 um
17-03-18 01:17:28.750 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.005817,
17-03-18 01:17:28.760 -07 000000610 INF: FPGA: Xmit ZDACW 36739\n [Z Motor]
17-03-18 01:17:28.760 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:17:28.770 -07 000000610 INF: FPGA: 'ZDACW 36739' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:17:28.790 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:28.790 -07 000000487 INF: FPGA: Recv ZDACR 36739
17-03-18 01:17:28.800 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:17:28.800 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:17:28.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:28.950 -07 000000487 INF: FPGA: Recv ZSGSRD 35467
17-03-18 01:17:28.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:28.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:28.960 -07 000000467 INF: FPGA: Recv ZSGSRD 35468
17-03-18 01:17:28.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:28.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:28.970 -07 000000461 INF: FPGA: Recv ZSGSRD 35472
17-03-18 01:17:28.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:28.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:28.980 -07 000000487 INF: FPGA: Recv ZSGSRD 35471
17-03-18 01:17:28.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:28.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:28.990 -07 000000487 INF: FPGA: Recv ZSGSRD 35471
17-03-18 01:17:29.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:29.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:29.000 -07 000000502 INF: FPGA: Recv ZSGSRD 35471
17-03-18 01:17:29.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:29.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:29.010 -07 000000502 INF: FPGA: Recv ZSGSRD 35473
17-03-18 01:17:29.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:29.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:29.020 -07 000000502 INF: FPGA: Recv ZSGSRD 35472
17-03-18 01:17:29.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:29.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:29.030 -07 000000625 INF: FPGA: Recv ZSGSRD 35465
17-03-18 01:17:29.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:29.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:29.040 -07 000000625 INF: FPGA: Recv ZSGSRD 35467
17-03-18 01:17:29.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:29.050 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:29.050 -07 000000487 INF: FPGA: Recv ZPIEZORD 31117
17-03-18 01:17:29.060 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:29.060 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -9.6 V.
17-03-18 01:17:29.060 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35470 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35471 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35465 (-167.3 uncal um), Max = 35473 (-167.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:17:29.060 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35470, posNoise = 3, negNoise = 5
17-03-18 01:17:29.060 -07 000000610 INF: Z Motor: After move to -0.168180, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:29.060 -07 000000610 INF: Z Motor: MoveAbsStepped took 321 ms)
17-03-18 01:17:29.060 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:29.060 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:29.060 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:29.060 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:29.060 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:17:29.060 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:29.060 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:17:29.060 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:17:29.060 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 01:17:29.060 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:17:29.060 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:17:29.060 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:17:29.070 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:17:29.070 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:17:29.070 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:17:29.070 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:17:29.080 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:17:29.080 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:17:29.080 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:17:29.080 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:17:29.100 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36916 150\n [Camera]
17-03-18 01:17:29.290 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:17:29.690 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:17:29.690 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:17:29.690 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:29.690 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:17:29.690 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:17:29.690 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:29.690 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:29.690 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 01:17:29.700 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:29.700 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:17:29.880 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36916 775
17-03-18 01:17:30.030 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:17:30.090 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:17:30.090 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:17:30.090 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:30.090 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:30.090 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:17:30.090 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:17:30.090 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:17:30.090 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:30.100 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:30.100 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:17:30.220 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-18 01:17:30.220 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-18 01:17:30.220 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:30.220 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:17:30.220 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:17:30.220 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:30.350 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:30.350 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:17:30.350 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:30.350 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:17:30.410 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:17:30.410 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:17:30.410 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36916 150' command took 2 ms to send, 1303 ms to get response, and 1328 ms overall
17-03-18 01:17:30.410 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:17:30.410 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.168190156679396. ------
17-03-18 01:17:30.410 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:30.410 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17495 mm
17-03-18 01:17:30.410 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:17:30.420 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:17:30.420 -07 000000561 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 01:17:30.420 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:30.420 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38218, sync = True, waitForSettling = False)
17-03-18 01:17:30.420 -07 000000569 INF: Z Motor: Moving to -0.174951 mm, started at -0.168190 mm, distance = -6.76 um
17-03-18 01:17:30.420 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:30.420 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:17:30.420 -07 000000625 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:17:30.430 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:17:30.430 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:17:30.430 -07 000000561 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:30.430 -07 000000561 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:17:30.430 -07 000000561 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:17:30.440 -07 000000569 INF: FPGA: Xmit ZDACW 38218\n [Z Motor]
17-03-18 01:17:30.440 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:17:30.450 -07 000000569 INF: FPGA: 'ZDACW 38218' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:17:30.450 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:17:30.460 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:30.460 -07 000000424 INF: FPGA: Recv ZDACR 38218
17-03-18 01:17:30.470 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:17:30.470 -07 000000569 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 01:17:30.630 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:17:30.630 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-18 01:17:30.740 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:17:30.740 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:17:30.740 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:30.740 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:17:30.740 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:17:30.740 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:30.750 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:30.750 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:30.750 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-18 01:17:30.750 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-18 01:17:30.830 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:17:30.830 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 401 ms overall
17-03-18 01:17:30.870 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:30.870 -07 000000569 INF: FPGA: Recv YRDPOS 137977
17-03-18 01:17:30.880 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:17:30.880 -07 000000561 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:30.880 -07 000000561 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 01:17:30.880 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.844 mm, average velocity = 2.104 mm/sec
17-03-18 01:17:31.830 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:31.830 -07 000000585 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:17:31.840 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:31.840 -07 000000561 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:31.860 -07 000000561 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:17:31.860 -07 000000561 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:17:31.860 -07 000000561 INF: Y Motor: Moved to 67.3721 after 1445 ms (table move)
17-03-18 01:17:31.870 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174951 mm (DAC = 38218)
17-03-18 01:17:31.870 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:31.870 -07 000000561 INF: FPGA: Recv ZSGSRD 36528
17-03-18 01:17:31.880 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:31.880 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:31.880 -07 000000561 INF: FPGA: Recv ZSGSRD 36524
17-03-18 01:17:31.890 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:31.890 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:31.890 -07 000000585 INF: FPGA: Recv ZSGSRD 36520
17-03-18 01:17:31.900 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:31.900 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:31.900 -07 000000561 INF: FPGA: Recv ZSGSRD 36522
17-03-18 01:17:31.910 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:31.910 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:31.910 -07 000000561 INF: FPGA: Recv ZSGSRD 36524
17-03-18 01:17:31.920 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:31.920 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:31.920 -07 000000561 INF: FPGA: Recv ZSGSRD 36528
17-03-18 01:17:31.930 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:31.930 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:31.930 -07 000000585 INF: FPGA: Recv ZSGSRD 36522
17-03-18 01:17:31.940 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:31.940 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:31.940 -07 000000585 INF: FPGA: Recv ZSGSRD 36523
17-03-18 01:17:31.950 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:31.950 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:31.950 -07 000000561 INF: FPGA: Recv ZSGSRD 36525
17-03-18 01:17:31.960 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:31.960 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:31.960 -07 000000585 INF: FPGA: Recv ZSGSRD 36524
17-03-18 01:17:31.970 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:31.970 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:31.970 -07 000000561 INF: FPGA: Recv ZPIEZORD 32549
17-03-18 01:17:31.980 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:31.980 -07 000000461 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.832 V. Piezo Error = -8.8 V.
17-03-18 01:17:31.980 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36524 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36524 (-174.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36520 (-174.0 uncal um), Max = 36528 (-174.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:17:31.980 -07 000000461 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36524, posNoise = 4, negNoise = 4
17-03-18 01:17:31.980 -07 000000461 INF: Z Motor: After move to -0.174951, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:31.980 -07 000000461 INF: Z Motor: Settle wait time = 1448 ms, measure time = 110 ms (allowed 150 ms), total time = 1558 ms
17-03-18 01:17:31.980 -07 000000461 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:17:32.020 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 01:17:32.020 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:17:32.020 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:32.020 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:32.020 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:32.020 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:17:32.020 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:32.020 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:32.020 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:17:32.020 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:17:32.030 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:17:32.030 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:17:32.040 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:17:32.040 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:17:32.040 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:17:32.080 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:17:32.240 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:17:32.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:17:32.380 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:17:32.380 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:17:32.380 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:17:32.390 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-18 01:17:32.420 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:17:32.420 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 01:17:32.420 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:17:32.500 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:17:32.500 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:32.500 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:17:32.500 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:17:32.520 -07 000000461 INF: Autofocus start
17-03-18 01:17:32.520 -07 000000461 INF: MeasureProfile start
17-03-18 01:17:32.520 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:32.530 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:32.530 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:17:32.530 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:17:32.540 -07 000000461 INF: MeasureProfile done
17-03-18 01:17:32.540 -07 000000461 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:17:32.540 -07 000000461 INF: Autofocus finished
17-03-18 01:17:32.730 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:17:32.730 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:17:32.730 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.174961276276812. ----------
17-03-18 01:17:32.730 -07 000000610 INF: Cycle	85	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:17:32.740 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36732, sync = True, waitForSettling = True)
17-03-18 01:17:32.740 -07 000000610 INF: Z Motor: Moving to -0.168148 mm, started at -0.174961 mm, distance = 6.81 um
17-03-18 01:17:32.740 -07 000000610 INF: FPGA: Xmit ZDACW 36732\n [Z Motor]
17-03-18 01:17:32.740 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 01:17:32.750 -07 000000610 INF: FPGA: 'ZDACW 36732' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:17:32.750 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:32.750 -07 000000618 INF: FPGA: Recv ZDACR 36732
17-03-18 01:17:32.760 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:32.760 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:17:32.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:32.910 -07 000000618 INF: FPGA: Recv ZSGSRD 35467
17-03-18 01:17:32.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:32.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:32.920 -07 000000461 INF: FPGA: Recv ZSGSRD 35474
17-03-18 01:17:32.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:32.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:32.930 -07 000000618 INF: FPGA: Recv ZSGSRD 35462
17-03-18 01:17:32.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:32.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:32.940 -07 000000618 INF: FPGA: Recv ZSGSRD 35468
17-03-18 01:17:32.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:32.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:32.950 -07 000000561 INF: FPGA: Recv ZSGSRD 35465
17-03-18 01:17:32.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:32.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:32.960 -07 000000618 INF: FPGA: Recv ZSGSRD 35470
17-03-18 01:17:32.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:32.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:32.970 -07 000000561 INF: FPGA: Recv ZSGSRD 35469
17-03-18 01:17:32.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:32.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:32.980 -07 000000561 INF: FPGA: Recv ZSGSRD 35465
17-03-18 01:17:32.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:32.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:32.990 -07 000000461 INF: FPGA: Recv ZSGSRD 35467
17-03-18 01:17:33.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:33.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:33.000 -07 000000501 INF: FPGA: Recv ZSGSRD 35463
17-03-18 01:17:33.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:33.010 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:33.010 -07 000000461 INF: FPGA: Recv ZPIEZORD 31142
17-03-18 01:17:33.020 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:33.020 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.605 V. Piezo Error = -9.5 V.
17-03-18 01:17:33.020 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35467 (-167.3 uncal um), Error = 0.8 uncal um, Median = 35467 (-167.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35462 (-167.3 uncal um), Max = 35474 (-167.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:17:33.020 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35467, posNoise = 7, negNoise = 5
17-03-18 01:17:33.020 -07 000000610 INF: Z Motor: After move to -0.168148, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:33.020 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:17:33.020 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:33.020 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:33.020 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:33.020 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:33.020 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:17:33.020 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:33.020 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:17:33.020 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:17:33.020 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:33.020 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:17:33.020 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:17:33.020 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:17:33.030 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:17:33.030 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:17:33.030 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:17:33.030 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:17:33.040 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:17:33.040 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:17:33.040 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:17:33.040 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:17:33.050 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36909 150\n [Camera]
17-03-18 01:17:33.250 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:17:33.640 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:17:33.640 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:17:33.640 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:33.640 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:17:33.640 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:17:33.640 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:33.640 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:33.640 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:17:33.650 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:33.650 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:17:33.830 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36909 775
17-03-18 01:17:33.980 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:17:34.040 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:17:34.040 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:17:34.040 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:34.040 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:17:34.040 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:17:34.040 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:34.040 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:34.040 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:17:34.040 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:34.050 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:17:34.140 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.99219,
17-03-18 01:17:34.170 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:17:34.170 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:17:34.170 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:34.170 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:34.170 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:17:34.170 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:17:34.170 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:17:34.170 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:34.170 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:34.170 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:17:34.360 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:17:34.360 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:17:34.360 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36909 150' command took 2 ms to send, 1305 ms to get response, and 1315 ms overall
17-03-18 01:17:34.360 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:17:34.360 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.168170884042971. ------
17-03-18 01:17:34.360 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:34.370 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17447 mm
17-03-18 01:17:34.370 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:17:34.370 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:34.370 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:17:34.370 -07 000000561 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 01:17:34.370 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 38113, sync = True, waitForSettling = False)
17-03-18 01:17:34.370 -07 000000487 INF: Z Motor: Moving to -0.174470 mm, started at -0.168171 mm, distance = -6.30 um
17-03-18 01:17:34.380 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:34.380 -07 000000487 INF: FPGA: Xmit ZDACW 38113\n [Z Motor]
17-03-18 01:17:34.380 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:17:34.390 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:34.390 -07 000000487 INF: FPGA: 'ZDACW 38113' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:17:34.390 -07 000000501 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:17:34.400 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:17:34.400 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:17:34.400 -07 000000561 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:34.400 -07 000000561 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:17:34.400 -07 000000561 INF: Y Motor: Moving 1345 steps-23
17-03-18 01:17:34.410 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:34.410 -07 000000467 INF: FPGA: Recv ZDACR 38113
17-03-18 01:17:34.420 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:17:34.420 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:17:34.420 -07 000000487 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 01:17:34.570 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:17:34.570 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:17:34.570 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:34.570 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:17:34.570 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:17:34.570 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:34.580 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:34.580 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:17:34.580 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:34.580 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:17:35.530 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:17:35.530 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 01:17:35.530 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1120 ms to get response, and 1150 ms overall
17-03-18 01:17:35.530 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1100 ms to get response, and 1130 ms overall
17-03-18 01:17:35.570 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:35.570 -07 000000618 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:17:35.580 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:17:35.580 -07 000000561 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:35.580 -07 000000561 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:17:35.580 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1130 ms, distance = 0.841 mm, average velocity = 0.744 mm/sec
17-03-18 01:17:36.530 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:36.530 -07 000000585 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:17:36.540 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:36.540 -07 000000561 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:36.560 -07 000000561 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:17:36.560 -07 000000561 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:17:36.560 -07 000000561 INF: Y Motor: Moved to 68.2051 after 2191 ms (table move)
17-03-18 01:17:36.570 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174470 mm (DAC = 38113)
17-03-18 01:17:36.570 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:36.570 -07 000000424 INF: FPGA: Recv ZSGSRD 36451
17-03-18 01:17:36.580 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:36.580 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:36.580 -07 000000467 INF: FPGA: Recv ZSGSRD 36453
17-03-18 01:17:36.590 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:36.590 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:36.590 -07 000000501 INF: FPGA: Recv ZSGSRD 36445
17-03-18 01:17:36.600 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:36.600 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:36.600 -07 000000585 INF: FPGA: Recv ZSGSRD 36451
17-03-18 01:17:36.610 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:36.610 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:36.610 -07 000000487 INF: FPGA: Recv ZSGSRD 36449
17-03-18 01:17:36.620 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:36.620 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:36.620 -07 000000467 INF: FPGA: Recv ZSGSRD 36444
17-03-18 01:17:36.630 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:36.630 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:36.630 -07 000000618 INF: FPGA: Recv ZSGSRD 36450
17-03-18 01:17:36.640 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:36.640 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:36.640 -07 000000561 INF: FPGA: Recv ZSGSRD 36455
17-03-18 01:17:36.650 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:36.650 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:36.650 -07 000000487 INF: FPGA: Recv ZSGSRD 36449
17-03-18 01:17:36.660 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:36.660 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:36.660 -07 000000585 INF: FPGA: Recv ZSGSRD 36448
17-03-18 01:17:36.670 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:36.670 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:36.670 -07 000000474 INF: FPGA: Recv ZPIEZORD 32462
17-03-18 01:17:36.680 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:36.680 -07 000000611 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.816 V. Piezo Error = -8.8 V.
17-03-18 01:17:36.680 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36450 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36450 (-173.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36444 (-173.6 uncal um), Max = 36455 (-173.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:17:36.680 -07 000000611 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36450, posNoise = 5, negNoise = 6
17-03-18 01:17:36.680 -07 000000611 INF: Z Motor: After move to -0.174470, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:36.680 -07 000000611 INF: Z Motor: Settle wait time = 2193 ms, measure time = 111 ms (allowed 150 ms), total time = 2304 ms
17-03-18 01:17:36.680 -07 000000611 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:17:36.720 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2348 ms
17-03-18 01:17:36.720 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:17:36.720 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:36.720 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:36.720 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:36.730 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:17:36.730 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:36.730 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:36.730 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:36.730 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:17:36.730 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:17:36.730 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:17:36.740 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:17:36.740 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:17:36.740 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:17:36.790 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:17:37.090 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:17:37.090 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:17:37.090 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:17:37.090 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 01:17:37.130 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:17:37.130 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 01:17:37.130 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:17:37.210 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:17:37.210 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:37.210 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:17:37.210 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:17:37.230 -07 000000561 INF: Autofocus start
17-03-18 01:17:37.230 -07 000000561 INF: MeasureProfile start
17-03-18 01:17:37.230 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:37.230 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:37.240 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:17:37.240 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:17:37.240 -07 000000561 INF: MeasureProfile done
17-03-18 01:17:37.240 -07 000000561 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:17:37.240 -07 000000561 INF: Autofocus finished
17-03-18 01:17:37.240 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:17:37.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:17:37.440 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:17:37.440 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:17:37.440 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.174485884578322. ----------
17-03-18 01:17:37.440 -07 000000610 INF: Cycle	85	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:17:37.450 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36646, sync = True, waitForSettling = True)
17-03-18 01:17:37.450 -07 000000610 INF: Z Motor: Moving to -0.167755 mm, started at -0.174486 mm, distance = 6.73 um
17-03-18 01:17:37.450 -07 000000610 INF: FPGA: Xmit ZDACW 36646\n [Z Motor]
17-03-18 01:17:37.450 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:17:37.460 -07 000000610 INF: FPGA: 'ZDACW 36646' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:37.460 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:37.460 -07 000000611 INF: FPGA: Recv ZDACR 36646
17-03-18 01:17:37.470 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:37.470 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:17:37.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:37.620 -07 000000467 INF: FPGA: Recv ZSGSRD 35407
17-03-18 01:17:37.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:37.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:37.630 -07 000000611 INF: FPGA: Recv ZSGSRD 35404
17-03-18 01:17:37.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:37.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:37.640 -07 000000501 INF: FPGA: Recv ZSGSRD 35403
17-03-18 01:17:37.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:37.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:37.650 -07 000000611 INF: FPGA: Recv ZSGSRD 35402
17-03-18 01:17:37.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:37.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:37.660 -07 000000467 INF: FPGA: Recv ZSGSRD 35411
17-03-18 01:17:37.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:37.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:37.670 -07 000000474 INF: FPGA: Recv ZSGSRD 35403
17-03-18 01:17:37.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:37.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:37.680 -07 000000501 INF: FPGA: Recv ZSGSRD 35402
17-03-18 01:17:37.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:37.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:37.690 -07 000000611 INF: FPGA: Recv ZSGSRD 35403
17-03-18 01:17:37.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:37.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:37.700 -07 000000467 INF: FPGA: Recv ZSGSRD 35403
17-03-18 01:17:37.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:37.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:37.710 -07 000000611 INF: FPGA: Recv ZSGSRD 35406
17-03-18 01:17:37.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:37.720 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:37.720 -07 000000561 INF: FPGA: Recv ZPIEZORD 31032
17-03-18 01:17:37.730 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:37.730 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -9.6 V.
17-03-18 01:17:37.730 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35404 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35403 (-166.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35402 (-166.9 uncal um), Max = 35411 (-166.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:17:37.730 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35404, posNoise = 7, negNoise = 2
17-03-18 01:17:37.730 -07 000000610 INF: Z Motor: After move to -0.167755, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:37.730 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:17:37.730 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:37.730 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:37.730 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:37.730 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:17:37.730 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:37.730 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:37.730 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:17:37.730 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:17:37.730 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:37.730 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:17:37.730 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:17:37.730 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:17:37.730 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:17:37.740 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:17:37.740 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:17:37.740 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:17:37.750 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:17:37.750 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:17:37.750 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:17:37.750 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:17:37.760 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36823 150\n [Camera]
17-03-18 01:17:37.960 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:17:38.350 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:17:38.350 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:17:38.350 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:38.350 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:38.350 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:17:38.350 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:17:38.350 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:17:38.350 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:38.350 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:38.350 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:17:38.540 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36823 775
17-03-18 01:17:38.690 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:17:38.740 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 01:17:38.740 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:17:38.740 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:38.740 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:38.740 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:17:38.740 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:17:38.740 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:38.750 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:38.750 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:17:38.750 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:17:38.880 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:17:38.880 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:17:38.880 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:38.990 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:17:38.990 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:17:38.990 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:38.990 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:38.990 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:17:39.000 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:39.000 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:17:39.070 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:17:39.070 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:17:39.070 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36823 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:17:39.070 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:17:39.070 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.16776615867804. ------
17-03-18 01:17:39.080 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:39.080 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17441 mm
17-03-18 01:17:39.080 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:17:39.080 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:39.080 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38101, sync = True, waitForSettling = False)
17-03-18 01:17:39.080 -07 000000501 INF: Z Motor: Moving to -0.174415 mm, started at -0.167766 mm, distance = -6.65 um
17-03-18 01:17:39.080 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:17:39.080 -07 000000611 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 01:17:39.090 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:39.090 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:39.090 -07 000000502 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:17:39.100 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:17:39.100 -07 000000611 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:39.100 -07 000000611 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:17:39.100 -07 000000611 INF: Y Motor: Moving 1340 steps-15
17-03-18 01:17:39.100 -07 000000501 INF: FPGA: Xmit ZDACW 38101\n [Z Motor]
17-03-18 01:17:39.100 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:17:39.110 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:17:39.110 -07 000000501 INF: FPGA: 'ZDACW 38101' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:17:39.120 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:17:39.130 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:39.130 -07 000000461 INF: FPGA: Recv ZDACR 38101
17-03-18 01:17:39.140 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:17:39.140 -07 000000501 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 01:17:39.310 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:17:39.310 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:17:39.390 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:17:39.390 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:17:39.390 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:39.390 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:17:39.390 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:17:39.390 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:39.400 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:39.400 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 01:17:39.400 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:39.400 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:17:39.490 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 01:17:39.490 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 01:17:39.500 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.993549,
17-03-18 01:17:39.550 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:39.550 -07 000000467 INF: FPGA: Recv YRDPOS 141367
17-03-18 01:17:39.560 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:17:39.560 -07 000000611 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:39.560 -07 000000611 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 01:17:39.560 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-18 01:17:40.510 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:40.510 -07 000000467 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:17:40.520 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:40.520 -07 000000611 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:40.540 -07 000000611 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:17:40.540 -07 000000611 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:17:40.540 -07 000000611 INF: Y Motor: Moved to 69.0273 after 1463 ms (table move)
17-03-18 01:17:40.550 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174415 mm (DAC = 38101)
17-03-18 01:17:40.550 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:40.550 -07 000000502 INF: FPGA: Recv ZSGSRD 36434
17-03-18 01:17:40.560 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:17:40.560 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:40.560 -07 000000569 INF: FPGA: Recv ZSGSRD 36443
17-03-18 01:17:40.570 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:40.570 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:40.570 -07 000000487 INF: FPGA: Recv ZSGSRD 36449
17-03-18 01:17:40.580 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:40.580 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:40.580 -07 000000618 INF: FPGA: Recv ZSGSRD 36434
17-03-18 01:17:40.590 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:40.590 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:40.590 -07 000000424 INF: FPGA: Recv ZSGSRD 36433
17-03-18 01:17:40.600 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:40.600 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:40.600 -07 000000611 INF: FPGA: Recv ZSGSRD 36439
17-03-18 01:17:40.610 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:40.610 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:40.610 -07 000000625 INF: FPGA: Recv ZSGSRD 36440
17-03-18 01:17:40.620 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:40.620 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:40.620 -07 000000424 INF: FPGA: Recv ZSGSRD 36436
17-03-18 01:17:40.630 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:40.630 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:40.630 -07 000000502 INF: FPGA: Recv ZSGSRD 36440
17-03-18 01:17:40.640 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:40.640 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:40.640 -07 000000424 INF: FPGA: Recv ZSGSRD 36443
17-03-18 01:17:40.650 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:40.650 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:40.650 -07 000000561 INF: FPGA: Recv ZPIEZORD 32457
17-03-18 01:17:40.660 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:40.660 -07 000000585 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.814 V. Piezo Error = -8.8 V.
17-03-18 01:17:40.660 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36439 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36440 (-173.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36433 (-173.5 uncal um), Max = 36449 (-173.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:17:40.660 -07 000000585 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36439, posNoise = 10, negNoise = 6
17-03-18 01:17:40.660 -07 000000585 INF: Z Motor: After move to -0.174415, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:40.660 -07 000000585 INF: Z Motor: Settle wait time = 1468 ms, measure time = 108 ms (allowed 150 ms), total time = 1576 ms
17-03-18 01:17:40.660 -07 000000585 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:17:40.710 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 01:17:40.710 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:17:40.710 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:40.710 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:40.710 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:40.710 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:40.710 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:17:40.710 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:40.710 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:17:40.710 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:17:40.720 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:17:40.720 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:17:40.720 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:17:40.720 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:17:40.730 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:17:40.770 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:17:41.070 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:17:41.070 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:17:41.070 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:17:41.070 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-18 01:17:41.110 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:17:41.110 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 01:17:41.110 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 01:17:41.200 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 01:17:41.200 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:41.200 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:17:41.200 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 01:17:41.210 -07 000000618 INF: Autofocus start
17-03-18 01:17:41.210 -07 000000618 INF: MeasureProfile start
17-03-18 01:17:41.210 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:41.210 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:41.220 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:17:41.220 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:17:41.220 -07 000000618 INF: MeasureProfile done
17-03-18 01:17:41.220 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:17:41.220 -07 000000618 INF: Autofocus finished
17-03-18 01:17:41.420 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:17:41.420 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:17:41.420 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.174415218244762. ----------
17-03-18 01:17:41.430 -07 000000610 INF: Cycle	85	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:17:41.430 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36615, sync = True, waitForSettling = True)
17-03-18 01:17:41.430 -07 000000610 INF: Z Motor: Moving to -0.167613 mm, started at -0.174415 mm, distance = 6.80 um
17-03-18 01:17:41.430 -07 000000610 INF: FPGA: Xmit ZDACW 36615\n [Z Motor]
17-03-18 01:17:41.430 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:17:41.440 -07 000000610 INF: FPGA: 'ZDACW 36615' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:17:41.440 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:41.440 -07 000000474 INF: FPGA: Recv ZDACR 36615
17-03-18 01:17:41.450 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:41.450 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:17:41.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:41.600 -07 000000461 INF: FPGA: Recv ZSGSRD 35381
17-03-18 01:17:41.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:41.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:41.610 -07 000000501 INF: FPGA: Recv ZSGSRD 35378
17-03-18 01:17:41.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:41.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:41.620 -07 000000467 INF: FPGA: Recv ZSGSRD 35380
17-03-18 01:17:41.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:41.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:41.630 -07 000000561 INF: FPGA: Recv ZSGSRD 35381
17-03-18 01:17:41.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:41.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:41.640 -07 000000625 INF: FPGA: Recv ZSGSRD 35379
17-03-18 01:17:41.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:41.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:41.650 -07 000000626 INF: FPGA: Recv ZSGSRD 35389
17-03-18 01:17:41.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:41.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:41.660 -07 000000424 INF: FPGA: Recv ZSGSRD 35378
17-03-18 01:17:41.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:41.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:41.670 -07 000000467 INF: FPGA: Recv ZSGSRD 35386
17-03-18 01:17:41.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:41.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:41.680 -07 000000474 INF: FPGA: Recv ZSGSRD 35381
17-03-18 01:17:41.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:41.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:41.690 -07 000000611 INF: FPGA: Recv ZSGSRD 35380
17-03-18 01:17:41.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:41.700 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:41.700 -07 000000424 INF: FPGA: Recv ZPIEZORD 31030
17-03-18 01:17:41.710 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:41.710 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.587 V. Piezo Error = -9.6 V.
17-03-18 01:17:41.710 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35381 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35380 (-166.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35378 (-166.7 uncal um), Max = 35389 (-166.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:17:41.710 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35381, posNoise = 8, negNoise = 3
17-03-18 01:17:41.710 -07 000000610 INF: Z Motor: After move to -0.167613, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:41.710 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:17:41.710 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:41.710 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:41.710 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:41.710 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:17:41.710 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:17:41.710 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:17:41.710 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:41.710 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:41.710 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:17:41.710 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:17:41.710 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:41.710 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:17:41.720 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:17:41.720 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:17:41.720 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:17:41.720 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:17:41.730 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:17:41.730 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:17:41.730 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:17:41.730 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:17:41.730 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36792 150\n [Camera]
17-03-18 01:17:41.930 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:17:42.250 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:17:42.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:17:42.320 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:17:42.320 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:17:42.330 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:42.330 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:17:42.330 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:17:42.330 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:42.330 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:42.330 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:17:42.330 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:42.330 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:17:42.520 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36792 775
17-03-18 01:17:42.670 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:17:42.720 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:17:42.720 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:17:42.720 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:42.730 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:42.730 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:17:42.730 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:17:42.730 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:17:42.730 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:42.730 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:42.740 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:17:42.860 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:17:42.860 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:17:42.860 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:42.960 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:17:42.970 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:17:42.970 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:42.970 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:42.970 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:17:42.970 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:42.970 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:17:43.050 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:17:43.050 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:17:43.050 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36792 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:17:43.050 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:17:43.050 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.167618401798779. ------
17-03-18 01:17:43.050 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:43.050 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17402 mm
17-03-18 01:17:43.050 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:17:43.060 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38015, sync = True, waitForSettling = False)
17-03-18 01:17:43.060 -07 000000424 INF: Z Motor: Moving to -0.174022 mm, started at -0.167618 mm, distance = -6.40 um
17-03-18 01:17:43.060 -07 000000424 INF: FPGA: Xmit ZDACW 38015\n [Z Motor]
17-03-18 01:17:43.060 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:17:43.060 -07 000000561 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 01:17:43.060 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:43.060 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:17:43.060 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:17:43.070 -07 000000424 INF: FPGA: 'ZDACW 38015' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:43.070 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:17:43.080 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:43.080 -07 000000467 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:17:43.090 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:43.090 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:17:43.090 -07 000000561 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:43.090 -07 000000561 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:17:43.090 -07 000000561 INF: Y Motor: Moving 1352 steps-32
17-03-18 01:17:43.090 -07 000000467 INF: FPGA: Recv ZDACR 38015
17-03-18 01:17:43.100 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:17:43.100 -07 000000424 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 01:17:43.100 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:17:43.270 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:17:43.270 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 01:17:43.370 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:17:43.370 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:17:43.370 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:43.370 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:17:43.380 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:17:43.380 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:43.380 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:43.380 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 01:17:43.380 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:43.390 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 01:17:43.470 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 01:17:43.470 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 01:17:43.520 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:43.520 -07 000000611 INF: FPGA: Recv YRDPOS 143079
17-03-18 01:17:43.530 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:43.530 -07 000000561 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:43.530 -07 000000561 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:17:43.530 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.184 mm/sec
17-03-18 01:17:44.480 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:44.480 -07 000000501 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:17:44.490 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:44.490 -07 000000561 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:44.510 -07 000000561 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:17:44.510 -07 000000561 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:17:44.510 -07 000000561 INF: Y Motor: Moved to 69.8633 after 1456 ms (table move)
17-03-18 01:17:44.520 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174022 mm (DAC = 38015)
17-03-18 01:17:44.520 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:44.520 -07 000000501 INF: FPGA: Recv ZSGSRD 36377
17-03-18 01:17:44.530 -07 000000474 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:17:44.530 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:44.530 -07 000000626 INF: FPGA: Recv ZSGSRD 36382
17-03-18 01:17:44.540 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:44.540 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:44.540 -07 000000467 INF: FPGA: Recv ZSGSRD 36377
17-03-18 01:17:44.550 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:44.560 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:44.560 -07 000000625 INF: FPGA: Recv ZSGSRD 36384
17-03-18 01:17:44.570 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:17:44.570 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:44.570 -07 000000424 INF: FPGA: Recv ZSGSRD 36374
17-03-18 01:17:44.580 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:44.580 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:44.580 -07 000000626 INF: FPGA: Recv ZSGSRD 36374
17-03-18 01:17:44.590 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:44.590 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:44.590 -07 000000424 INF: FPGA: Recv ZSGSRD 36377
17-03-18 01:17:44.600 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:44.600 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:44.600 -07 000000626 INF: FPGA: Recv ZSGSRD 36381
17-03-18 01:17:44.610 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:44.610 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:44.610 -07 000000625 INF: FPGA: Recv ZSGSRD 36386
17-03-18 01:17:44.620 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:44.620 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:44.620 -07 000000501 INF: FPGA: Recv ZSGSRD 36378
17-03-18 01:17:44.630 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:44.630 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:44.630 -07 000000467 INF: FPGA: Recv ZPIEZORD 32372
17-03-18 01:17:44.640 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:44.640 -07 000000474 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.801 V. Piezo Error = -8.9 V.
17-03-18 01:17:44.640 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36379 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36378 (-173.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36374 (-173.1 uncal um), Max = 36386 (-173.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:17:44.640 -07 000000474 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36379, posNoise = 7, negNoise = 5
17-03-18 01:17:44.640 -07 000000474 INF: Z Motor: After move to -0.174022, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:44.640 -07 000000474 INF: Z Motor: Settle wait time = 1460 ms, measure time = 120 ms (allowed 150 ms), total time = 1580 ms
17-03-18 01:17:44.640 -07 000000474 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-18 01:17:44.670 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 01:17:44.670 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:17:44.670 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:44.670 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:44.670 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:44.670 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:44.670 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:17:44.670 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:44.670 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:17:44.670 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:17:44.680 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:17:44.680 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:17:44.680 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:17:44.680 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:17:44.690 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:17:44.730 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:17:44.870 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.977204,
17-03-18 01:17:45.030 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:17:45.030 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:17:45.030 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:17:45.030 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-18 01:17:45.070 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:17:45.070 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 01:17:45.070 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:17:45.150 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:17:45.150 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:45.150 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:17:45.150 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:17:45.170 -07 000000561 INF: Autofocus start
17-03-18 01:17:45.170 -07 000000561 INF: MeasureProfile start
17-03-18 01:17:45.170 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:45.170 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:45.180 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:17:45.180 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:17:45.180 -07 000000561 INF: MeasureProfile done
17-03-18 01:17:45.180 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:17:45.180 -07 000000561 INF: Autofocus finished
17-03-18 01:17:45.380 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:17:45.380 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:17:45.390 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.174029765516257. ----------
17-03-18 01:17:45.390 -07 000000610 INF: Cycle	85	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:17:45.390 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36529, sync = True, waitForSettling = True)
17-03-18 01:17:45.390 -07 000000610 INF: Z Motor: Moving to -0.167219 mm, started at -0.174030 mm, distance = 6.81 um
17-03-18 01:17:45.390 -07 000000610 INF: FPGA: Xmit ZDACW 36529\n [Z Motor]
17-03-18 01:17:45.390 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:17:45.400 -07 000000610 INF: FPGA: 'ZDACW 36529' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:17:45.400 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:45.400 -07 000000626 INF: FPGA: Recv ZDACR 36529
17-03-18 01:17:45.410 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:45.410 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:17:45.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:45.560 -07 000000625 INF: FPGA: Recv ZSGSRD 35318
17-03-18 01:17:45.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:45.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:45.570 -07 000000474 INF: FPGA: Recv ZSGSRD 35322
17-03-18 01:17:45.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:45.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:45.580 -07 000000625 INF: FPGA: Recv ZSGSRD 35326
17-03-18 01:17:45.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:45.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:45.590 -07 000000585 INF: FPGA: Recv ZSGSRD 35318
17-03-18 01:17:45.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:45.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:45.600 -07 000000474 INF: FPGA: Recv ZSGSRD 35323
17-03-18 01:17:45.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:45.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:45.610 -07 000000611 INF: FPGA: Recv ZSGSRD 35322
17-03-18 01:17:45.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:45.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:45.620 -07 000000625 INF: FPGA: Recv ZSGSRD 35319
17-03-18 01:17:45.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:45.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:45.630 -07 000000585 INF: FPGA: Recv ZSGSRD 35315
17-03-18 01:17:45.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:45.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:45.640 -07 000000467 INF: FPGA: Recv ZSGSRD 35317
17-03-18 01:17:45.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:45.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:45.650 -07 000000501 INF: FPGA: Recv ZSGSRD 35321
17-03-18 01:17:45.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:45.660 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:45.660 -07 000000561 INF: FPGA: Recv ZPIEZORD 30972
17-03-18 01:17:45.670 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:45.670 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.574 V. Piezo Error = -9.6 V.
17-03-18 01:17:45.670 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35320 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35320 (-166.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35315 (-166.3 uncal um), Max = 35326 (-166.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:17:45.670 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35320, posNoise = 6, negNoise = 5
17-03-18 01:17:45.670 -07 000000610 INF: Z Motor: After move to -0.167219, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:45.670 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:17:45.670 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:45.670 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:45.670 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:45.670 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:45.670 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:17:45.670 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:17:45.670 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:17:45.670 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:45.670 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:17:45.670 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:17:45.670 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:45.670 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:17:45.680 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:17:45.680 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:17:45.680 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:17:45.680 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:17:45.690 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:17:45.690 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:17:45.690 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:17:45.690 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:17:45.700 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36706 150\n [Camera]
17-03-18 01:17:45.900 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:17:46.290 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:17:46.290 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:17:46.290 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:46.290 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:17:46.290 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:17:46.290 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:46.290 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:46.300 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:17:46.300 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:46.300 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:17:46.480 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36706 775
17-03-18 01:17:46.630 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:17:46.690 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:17:46.690 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:17:46.690 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:46.690 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:17:46.690 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:17:46.690 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:46.690 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:46.690 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:17:46.700 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:46.700 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:17:46.820 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:17:46.820 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:17:46.820 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:46.930 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:17:46.930 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:17:46.930 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:46.930 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:46.930 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:17:46.930 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:46.930 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:17:47.010 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:17:47.010 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:17:47.010 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36706 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-18 01:17:47.010 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:17:47.010 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.167226524858132. ------
17-03-18 01:17:47.010 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:47.010 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17331 mm
17-03-18 01:17:47.010 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:17:47.020 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:17:47.020 -07 000000501 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 01:17:47.020 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:47.020 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 37859, sync = True, waitForSettling = False)
17-03-18 01:17:47.020 -07 000000625 INF: Z Motor: Moving to -0.173307 mm, started at -0.167227 mm, distance = -6.08 um
17-03-18 01:17:47.020 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:47.020 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-18 01:17:47.020 -07 000000626 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:17:47.030 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:17:47.030 -07 000000625 INF: FPGA: Xmit ZDACW 37859\n [Z Motor]
17-03-18 01:17:47.030 -07 000000501 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:47.030 -07 000000501 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:17:47.030 -07 000000501 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:17:47.030 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 01:17:47.040 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:17:47.040 -07 000000625 INF: FPGA: 'ZDACW 37859' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:17:47.050 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:17:47.060 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:47.060 -07 000000618 INF: FPGA: Recv ZDACR 37859
17-03-18 01:17:47.070 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:17:47.070 -07 000000625 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:17:47.240 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:17:47.240 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-18 01:17:47.240 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:17:47.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:17:47.330 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:17:47.330 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:17:47.330 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:47.330 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:17:47.340 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:17:47.340 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:47.340 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:47.340 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:47.340 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 01:17:47.350 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:17:47.420 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 01:17:47.430 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 399 ms overall
17-03-18 01:17:47.470 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:47.470 -07 000000585 INF: FPGA: Recv YRDPOS 144769
17-03-18 01:17:47.480 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:17:47.480 -07 000000501 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:47.480 -07 000000501 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:17:47.480 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.104 mm/sec
17-03-18 01:17:48.430 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:48.430 -07 000000424 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:17:48.440 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:48.440 -07 000000501 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:48.460 -07 000000501 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:17:48.460 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:17:48.460 -07 000000501 INF: Y Motor: Moved to 70.6885 after 1443 ms (table move)
17-03-18 01:17:48.470 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173307 mm (DAC = 37859)
17-03-18 01:17:48.470 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:48.470 -07 000000611 INF: FPGA: Recv ZSGSRD 36271
17-03-18 01:17:48.480 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:48.480 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:48.480 -07 000000625 INF: FPGA: Recv ZSGSRD 36265
17-03-18 01:17:48.490 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:48.490 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:48.490 -07 000000424 INF: FPGA: Recv ZSGSRD 36270
17-03-18 01:17:48.500 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:48.500 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:48.500 -07 000000618 INF: FPGA: Recv ZSGSRD 36269
17-03-18 01:17:48.510 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:48.510 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:48.510 -07 000000424 INF: FPGA: Recv ZSGSRD 36264
17-03-18 01:17:48.520 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:48.520 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:48.520 -07 000000618 INF: FPGA: Recv ZSGSRD 36268
17-03-18 01:17:48.530 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:48.530 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:48.530 -07 000000625 INF: FPGA: Recv ZSGSRD 36266
17-03-18 01:17:48.540 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:48.540 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:48.540 -07 000000585 INF: FPGA: Recv ZSGSRD 36271
17-03-18 01:17:48.550 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:48.550 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:48.550 -07 000000424 INF: FPGA: Recv ZSGSRD 36270
17-03-18 01:17:48.560 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:48.560 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:48.560 -07 000000501 INF: FPGA: Recv ZSGSRD 36265
17-03-18 01:17:48.570 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:48.570 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:48.570 -07 000000424 INF: FPGA: Recv ZPIEZORD 32200
17-03-18 01:17:48.580 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:48.580 -07 000000561 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.777 V. Piezo Error = -9.0 V.
17-03-18 01:17:48.580 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36268 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36268 (-172.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36264 (-172.4 uncal um), Max = 36271 (-172.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:17:48.580 -07 000000561 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36268, posNoise = 3, negNoise = 4
17-03-18 01:17:48.580 -07 000000561 INF: Z Motor: After move to -0.173307, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:48.580 -07 000000561 INF: Z Motor: Settle wait time = 1447 ms, measure time = 110 ms (allowed 150 ms), total time = 1557 ms
17-03-18 01:17:48.580 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:17:48.620 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 01:17:48.620 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:17:48.620 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:48.620 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:48.620 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:48.620 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:48.620 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:17:48.620 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:48.620 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:48.620 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:17:48.630 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:17:48.630 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:17:48.640 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:17:48.640 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:17:48.640 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:17:48.690 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:17:48.990 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:17:48.990 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:17:48.990 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:17:48.990 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-18 01:17:49.030 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:17:49.030 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 01:17:49.030 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:17:49.100 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:17:49.100 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:49.100 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:17:49.100 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 01:17:49.130 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:49.130 -07 000000618 INF: Autofocus start
17-03-18 01:17:49.130 -07 000000618 INF: MeasureProfile start
17-03-18 01:17:49.130 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:49.140 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:17:49.140 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:17:49.140 -07 000000618 INF: MeasureProfile done
17-03-18 01:17:49.140 -07 000000618 INF: X=80  Z correction [um]=0.337546
17-03-18 01:17:49.140 -07 000000618 INF: Autofocus finished
17-03-18 01:17:49.340 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:17:49.340 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:17:49.340 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.173316677968521. ----------
17-03-18 01:17:49.340 -07 000000610 INF: Cycle	85	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:17:49.350 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36445, sync = True, waitForSettling = True)
17-03-18 01:17:49.350 -07 000000610 INF: Z Motor: Moving to -0.166835 mm, started at -0.173317 mm, distance = 6.48 um
17-03-18 01:17:49.350 -07 000000610 INF: FPGA: Xmit ZDACW 36445\n [Z Motor]
17-03-18 01:17:49.350 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 01:17:49.360 -07 000000610 INF: FPGA: 'ZDACW 36445' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:17:49.360 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:49.360 -07 000000611 INF: FPGA: Recv ZDACR 36445
17-03-18 01:17:49.370 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:49.370 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:17:49.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:49.520 -07 000000561 INF: FPGA: Recv ZSGSRD 35260
17-03-18 01:17:49.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:49.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:49.530 -07 000000611 INF: FPGA: Recv ZSGSRD 35267
17-03-18 01:17:49.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:49.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:49.540 -07 000000501 INF: FPGA: Recv ZSGSRD 35262
17-03-18 01:17:49.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:49.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:49.550 -07 000000611 INF: FPGA: Recv ZSGSRD 35257
17-03-18 01:17:49.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:49.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:49.560 -07 000000424 INF: FPGA: Recv ZSGSRD 35262
17-03-18 01:17:49.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:49.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:49.570 -07 000000618 INF: FPGA: Recv ZSGSRD 35261
17-03-18 01:17:49.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:49.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:49.580 -07 000000561 INF: FPGA: Recv ZSGSRD 35263
17-03-18 01:17:49.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:49.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:49.590 -07 000000618 INF: FPGA: Recv ZSGSRD 35262
17-03-18 01:17:49.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:49.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:49.600 -07 000000561 INF: FPGA: Recv ZSGSRD 35261
17-03-18 01:17:49.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:49.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:49.610 -07 000000611 INF: FPGA: Recv ZSGSRD 35259
17-03-18 01:17:49.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:49.620 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:49.620 -07 000000501 INF: FPGA: Recv ZPIEZORD 30868
17-03-18 01:17:49.630 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:49.630 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.561 V. Piezo Error = -9.7 V.
17-03-18 01:17:49.630 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35261 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35262 (-166.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35257 (-166.0 uncal um), Max = 35267 (-166.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:17:49.630 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35261, posNoise = 6, negNoise = 4
17-03-18 01:17:49.630 -07 000000610 INF: Z Motor: After move to -0.166835, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:49.630 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:17:49.630 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:49.630 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:49.630 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:49.630 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:17:49.630 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:49.630 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:49.630 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:17:49.630 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:17:49.630 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:17:49.630 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:17:49.640 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:17:49.640 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:17:49.640 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:17:49.640 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:17:49.640 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:17:49.640 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:17:49.650 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:17:49.650 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:17:49.650 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:17:49.650 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:17:49.650 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36622 150\n [Camera]
17-03-18 01:17:49.850 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:17:50.240 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.98264,
17-03-18 01:17:50.250 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:17:50.250 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:17:50.250 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:50.250 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:17:50.250 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:17:50.250 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:50.250 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:50.250 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:17:50.260 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:50.360 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:17:50.430 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36622 775
17-03-18 01:17:50.580 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:17:50.630 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 01:17:50.630 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 01:17:50.630 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:50.640 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:50.640 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:17:50.750 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:17:50.750 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 495 ms.
17-03-18 01:17:50.750 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:50.750 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:17:50.760 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-18 01:17:50.770 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:17:50.770 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:17:50.770 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:50.780 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:17:50.780 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:17:50.780 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:50.780 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:50.780 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:17:50.780 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:50.780 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:17:50.960 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:17:50.960 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:17:50.960 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36622 150' command took 2 ms to send, 1309 ms to get response, and 1313 ms overall
17-03-18 01:17:50.970 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:17:50.970 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.166847496341768. ------
17-03-18 01:17:50.970 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:50.970 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17341 mm
17-03-18 01:17:50.970 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:17:50.970 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:50.980 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:17:50.980 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:17:50.980 -07 000000561 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 01:17:50.980 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:17:50.980 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37881, sync = True, waitForSettling = False)
17-03-18 01:17:50.980 -07 000000618 INF: Z Motor: Moving to -0.173408 mm, started at -0.166847 mm, distance = -6.56 um
17-03-18 01:17:50.990 -07 000000618 INF: FPGA: Xmit ZDACW 37881\n [Z Motor]
17-03-18 01:17:50.990 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:17:51.000 -07 000000618 INF: FPGA: 'ZDACW 37881' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:17:51.000 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:51.000 -07 000000501 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:17:51.010 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:17:51.010 -07 000000561 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:51.010 -07 000000561 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:17:51.010 -07 000000561 INF: Y Motor: Moving 1351 steps-30
17-03-18 01:17:51.010 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:51.010 -07 000000424 INF: FPGA: Recv ZDACR 37881
17-03-18 01:17:51.020 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:17:51.020 -07 000000618 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 01:17:51.020 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:17:51.170 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 01:17:51.170 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:17:51.170 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:51.170 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 01:17:51.170 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:17:51.170 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:51.170 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:51.180 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:17:51.180 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:17:51.180 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:17:51.180 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 01:17:51.180 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:17:51.390 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 01:17:51.390 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:17:51.440 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:51.440 -07 000000501 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:17:51.450 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:51.450 -07 000000561 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:51.450 -07 000000561 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:17:51.450 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.176 mm/sec
17-03-18 01:17:52.250 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:17:52.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:17:52.400 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:52.400 -07 000000487 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:17:52.410 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:52.410 -07 000000561 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:52.430 -07 000000561 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:17:52.430 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:17:52.430 -07 000000561 INF: Y Motor: Moved to 71.5190 after 1455 ms (table move)
17-03-18 01:17:52.440 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173408 mm (DAC = 37881)
17-03-18 01:17:52.440 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:52.440 -07 000000618 INF: FPGA: Recv ZSGSRD 36286
17-03-18 01:17:52.450 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:52.450 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:52.450 -07 000000487 INF: FPGA: Recv ZSGSRD 36284
17-03-18 01:17:52.460 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:52.460 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:52.460 -07 000000561 INF: FPGA: Recv ZSGSRD 36281
17-03-18 01:17:52.470 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:52.470 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:52.470 -07 000000424 INF: FPGA: Recv ZSGSRD 36291
17-03-18 01:17:52.480 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:52.480 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:52.480 -07 000000618 INF: FPGA: Recv ZSGSRD 36284
17-03-18 01:17:52.490 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:52.490 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:52.490 -07 000000501 INF: FPGA: Recv ZSGSRD 36290
17-03-18 01:17:52.500 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:52.500 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:52.500 -07 000000625 INF: FPGA: Recv ZSGSRD 36279
17-03-18 01:17:52.510 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:52.510 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:52.510 -07 000000502 INF: FPGA: Recv ZSGSRD 36278
17-03-18 01:17:52.520 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:52.520 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:52.520 -07 000000625 INF: FPGA: Recv ZSGSRD 36286
17-03-18 01:17:52.530 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:52.530 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:52.530 -07 000000611 INF: FPGA: Recv ZSGSRD 36281
17-03-18 01:17:52.540 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:52.540 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:52.540 -07 000000618 INF: FPGA: Recv ZPIEZORD 32238
17-03-18 01:17:52.550 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:52.550 -07 000000569 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.780 V. Piezo Error = -8.9 V.
17-03-18 01:17:52.550 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36284 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36284 (-172.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36278 (-172.5 uncal um), Max = 36291 (-172.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:17:52.550 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36284, posNoise = 7, negNoise = 6
17-03-18 01:17:52.550 -07 000000569 INF: Z Motor: After move to -0.173408, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:52.550 -07 000000569 INF: Z Motor: Settle wait time = 1458 ms, measure time = 111 ms (allowed 150 ms), total time = 1569 ms
17-03-18 01:17:52.550 -07 000000569 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:17:52.590 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 01:17:52.590 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:17:52.590 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:52.590 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:52.590 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:52.590 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:52.590 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:17:52.590 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:52.590 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:52.590 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:17:52.600 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:17:52.600 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:17:52.610 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:17:52.610 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:17:52.610 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:17:52.660 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 01:17:52.960 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 01:17:52.960 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 01:17:52.960 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:17:52.960 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-18 01:17:53.000 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:17:53.000 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 01:17:53.000 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:17:53.080 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:17:53.080 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:53.080 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:17:53.080 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 01:17:53.100 -07 000000569 INF: Autofocus start
17-03-18 01:17:53.100 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:53.100 -07 000000569 INF: MeasureProfile start
17-03-18 01:17:53.100 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:53.110 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:17:53.110 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:17:53.110 -07 000000569 INF: MeasureProfile done
17-03-18 01:17:53.110 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:17:53.110 -07 000000569 INF: Autofocus finished
17-03-18 01:17:53.310 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:17:53.310 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:17:53.310 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.17341946536279. ----------
17-03-18 01:17:53.310 -07 000000610 INF: Cycle	85	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:17:53.320 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36414, sync = True, waitForSettling = True)
17-03-18 01:17:53.320 -07 000000610 INF: Z Motor: Moving to -0.166693 mm, started at -0.173419 mm, distance = 6.73 um
17-03-18 01:17:53.320 -07 000000610 INF: FPGA: Xmit ZDACW 36414\n [Z Motor]
17-03-18 01:17:53.320 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 01:17:53.330 -07 000000610 INF: FPGA: 'ZDACW 36414' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:53.330 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:53.330 -07 000000618 INF: FPGA: Recv ZDACR 36414
17-03-18 01:17:53.340 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:53.340 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:17:53.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:53.490 -07 000000585 INF: FPGA: Recv ZSGSRD 35240
17-03-18 01:17:53.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:53.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:53.500 -07 000000569 INF: FPGA: Recv ZSGSRD 35241
17-03-18 01:17:53.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:53.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:53.510 -07 000000501 INF: FPGA: Recv ZSGSRD 35237
17-03-18 01:17:53.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:53.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:53.520 -07 000000625 INF: FPGA: Recv ZSGSRD 35237
17-03-18 01:17:53.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:53.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:53.530 -07 000000501 INF: FPGA: Recv ZSGSRD 35234
17-03-18 01:17:53.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:53.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:53.540 -07 000000561 INF: FPGA: Recv ZSGSRD 35244
17-03-18 01:17:53.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:53.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:53.550 -07 000000585 INF: FPGA: Recv ZSGSRD 35240
17-03-18 01:17:53.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:17:53.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:53.560 -07 000000625 INF: FPGA: Recv ZSGSRD 35240
17-03-18 01:17:53.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:53.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:53.570 -07 000000611 INF: FPGA: Recv ZSGSRD 35240
17-03-18 01:17:53.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:53.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:53.580 -07 000000625 INF: FPGA: Recv ZSGSRD 35239
17-03-18 01:17:53.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:53.590 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:53.590 -07 000000585 INF: FPGA: Recv ZPIEZORD 30880
17-03-18 01:17:53.600 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:53.600 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.6 V.
17-03-18 01:17:53.600 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35239 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35240 (-165.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35234 (-165.8 uncal um), Max = 35244 (-165.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:17:53.600 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35239, posNoise = 5, negNoise = 5
17-03-18 01:17:53.600 -07 000000610 INF: Z Motor: After move to -0.166693, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:53.600 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:17:53.600 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:53.600 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:53.600 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:53.600 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:53.600 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:17:53.600 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:17:53.600 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:17:53.600 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:53.600 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:17:53.600 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:17:53.600 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:53.600 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:17:53.600 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:17:53.600 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:17:53.610 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:17:53.610 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:17:53.610 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:17:53.610 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:17:53.620 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:17:53.620 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:17:53.620 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36591 150\n [Camera]
17-03-18 01:17:53.820 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:17:54.210 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:17:54.210 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:17:54.210 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:54.210 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:54.210 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:17:54.210 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:17:54.210 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:17:54.210 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:54.210 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:54.210 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:17:54.400 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36591 775
17-03-18 01:17:54.550 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:17:54.610 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:17:54.610 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:17:54.610 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:54.610 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:17:54.610 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:17:54.610 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:54.610 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:54.620 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:17:54.620 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:54.620 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:17:54.740 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:17:54.740 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:17:54.740 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:54.740 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:17:54.740 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:54.740 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:17:54.740 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:17:54.750 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:54.750 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:54.750 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:17:54.930 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:17:54.930 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:17:54.930 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36591 150' command took 2 ms to send, 1308 ms to get response, and 1313 ms overall
17-03-18 01:17:54.940 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:17:54.940 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.166706163674649. ------
17-03-18 01:17:54.940 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17312 mm
17-03-18 01:17:54.940 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:17:54.940 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:54.940 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:17:54.940 -07 000000474 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 01:17:54.940 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37818, sync = True, waitForSettling = False)
17-03-18 01:17:54.940 -07 000000501 INF: Z Motor: Moving to -0.173120 mm, started at -0.166706 mm, distance = -6.41 um
17-03-18 01:17:54.940 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:54.950 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:17:54.950 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:54.950 -07 000000618 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:17:54.960 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:17:54.960 -07 000000474 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:54.960 -07 000000474 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:17:54.960 -07 000000474 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:17:54.960 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:17:54.970 -07 000000501 INF: FPGA: Xmit ZDACW 37818\n [Z Motor]
17-03-18 01:17:54.970 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:17:54.980 -07 000000501 INF: FPGA: 'ZDACW 37818' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 01:17:54.980 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:17:54.990 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:54.990 -07 000000618 INF: FPGA: Recv ZDACR 37818
17-03-18 01:17:55.000 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:17:55.000 -07 000000501 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 01:17:55.150 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 01:17:55.150 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:17:55.150 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:55.150 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 01:17:55.150 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:17:55.150 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:55.160 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:17:55.160 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 01:17:55.160 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:17:55.160 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 01:17:55.160 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:55.170 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 422 ms.
17-03-18 01:17:55.350 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 01:17:55.350 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 01:17:55.400 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:55.400 -07 000000611 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:17:55.410 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:17:55.410 -07 000000474 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:55.410 -07 000000474 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 01:17:55.410 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-18 01:17:55.710 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.003063,
17-03-18 01:17:56.360 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:56.360 -07 000000424 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:17:56.370 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:17:56.370 -07 000000474 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:56.390 -07 000000474 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:17:56.390 -07 000000474 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:17:56.390 -07 000000474 INF: Y Motor: Moved to 72.3496 after 1449 ms (table move)
17-03-18 01:17:56.400 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173120 mm (DAC = 37818)
17-03-18 01:17:56.400 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:56.400 -07 000000626 INF: FPGA: Recv ZSGSRD 36245
17-03-18 01:17:56.410 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:56.410 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:56.410 -07 000000626 INF: FPGA: Recv ZSGSRD 36238
17-03-18 01:17:56.420 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:56.420 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:56.420 -07 000000585 INF: FPGA: Recv ZSGSRD 36234
17-03-18 01:17:56.430 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:56.430 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:56.430 -07 000000625 INF: FPGA: Recv ZSGSRD 36240
17-03-18 01:17:56.440 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:56.440 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:56.440 -07 000000625 INF: FPGA: Recv ZSGSRD 36242
17-03-18 01:17:56.450 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:56.450 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:56.450 -07 000000625 INF: FPGA: Recv ZSGSRD 36236
17-03-18 01:17:56.460 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:56.460 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:56.460 -07 000000625 INF: FPGA: Recv ZSGSRD 36238
17-03-18 01:17:56.470 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:56.470 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:56.470 -07 000000625 INF: FPGA: Recv ZSGSRD 36241
17-03-18 01:17:56.480 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:56.480 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:56.480 -07 000000625 INF: FPGA: Recv ZSGSRD 36241
17-03-18 01:17:56.490 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:56.490 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:56.490 -07 000000626 INF: FPGA: Recv ZSGSRD 36234
17-03-18 01:17:56.500 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:56.500 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:56.500 -07 000000569 INF: FPGA: Recv ZPIEZORD 32159
17-03-18 01:17:56.510 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:56.510 -07 000000561 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.771 V. Piezo Error = -9.0 V.
17-03-18 01:17:56.510 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36239 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36239 (-172.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36234 (-172.2 uncal um), Max = 36245 (-172.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:17:56.510 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36239, posNoise = 6, negNoise = 5
17-03-18 01:17:56.510 -07 000000561 INF: Z Motor: After move to -0.173120, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:56.510 -07 000000561 INF: Z Motor: Settle wait time = 1452 ms, measure time = 110 ms (allowed 150 ms), total time = 1562 ms
17-03-18 01:17:56.510 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:17:56.550 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 01:17:56.550 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:17:56.550 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:56.550 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:56.550 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:56.550 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:56.550 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:17:56.550 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:56.550 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:56.550 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:17:56.560 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:17:56.560 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:17:56.570 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:17:56.570 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:17:56.570 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:17:56.610 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:17:56.910 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:17:56.910 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:17:56.910 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:17:56.920 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2625924992, 0x0, 559484976) start.
17-03-18 01:17:56.950 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:17:56.950 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 01:17:56.950 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:17:57.040 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2625924992, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 01:17:57.040 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:57.040 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:17:57.040 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 01:17:57.050 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:57.050 -07 000000626 INF: Autofocus start
17-03-18 01:17:57.050 -07 000000626 INF: MeasureProfile start
17-03-18 01:17:57.060 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:57.060 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-18 01:17:57.060 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:17:57.070 -07 000000626 INF: MeasureProfile done
17-03-18 01:17:57.070 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:17:57.070 -07 000000626 INF: Autofocus finished
17-03-18 01:17:57.250 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:17:57.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:17:57.260 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:17:57.260 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-18 01:17:57.270 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.17313037581641. ----------
17-03-18 01:17:57.270 -07 000000610 INF: Cycle	85	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:17:57.270 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36315, sync = True, waitForSettling = True)
17-03-18 01:17:57.270 -07 000000610 INF: Z Motor: Moving to -0.166239 mm, started at -0.173130 mm, distance = 6.89 um
17-03-18 01:17:57.270 -07 000000610 INF: FPGA: Xmit ZDACW 36315\n [Z Motor]
17-03-18 01:17:57.270 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:17:57.280 -07 000000610 INF: FPGA: 'ZDACW 36315' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:17:57.280 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:57.280 -07 000000626 INF: FPGA: Recv ZDACR 36315
17-03-18 01:17:57.290 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:57.290 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:17:57.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:57.440 -07 000000501 INF: FPGA: Recv ZSGSRD 35173
17-03-18 01:17:57.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:57.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:57.450 -07 000000611 INF: FPGA: Recv ZSGSRD 35166
17-03-18 01:17:57.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:57.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:57.460 -07 000000424 INF: FPGA: Recv ZSGSRD 35168
17-03-18 01:17:57.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:57.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:57.470 -07 000000626 INF: FPGA: Recv ZSGSRD 35170
17-03-18 01:17:57.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:57.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:57.480 -07 000000501 INF: FPGA: Recv ZSGSRD 35160
17-03-18 01:17:57.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:57.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:57.490 -07 000000611 INF: FPGA: Recv ZSGSRD 35176
17-03-18 01:17:57.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:57.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:57.500 -07 000000626 INF: FPGA: Recv ZSGSRD 35171
17-03-18 01:17:57.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:57.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:57.510 -07 000000424 INF: FPGA: Recv ZSGSRD 35170
17-03-18 01:17:57.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:57.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:57.520 -07 000000611 INF: FPGA: Recv ZSGSRD 35166
17-03-18 01:17:57.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:57.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:17:57.530 -07 000000626 INF: FPGA: Recv ZSGSRD 35163
17-03-18 01:17:57.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:57.540 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:17:57.540 -07 000000501 INF: FPGA: Recv ZPIEZORD 30754
17-03-18 01:17:57.550 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:57.550 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.541 V. Piezo Error = -9.7 V.
17-03-18 01:17:57.550 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35168 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35169 (-165.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35160 (-165.3 uncal um), Max = 35176 (-165.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:17:57.550 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35168, posNoise = 8, negNoise = 8
17-03-18 01:17:57.550 -07 000000610 INF: Z Motor: After move to -0.166239, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:17:57.550 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:17:57.550 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:17:57.550 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:17:57.550 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:17:57.550 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:17:57.550 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:17:57.550 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:17:57.550 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:17:57.550 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:17:57.550 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:17:57.550 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:17:57.550 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:17:57.550 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:17:57.560 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:17:57.560 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:17:57.560 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:17:57.560 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:17:57.570 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:17:57.570 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:17:57.570 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:17:57.570 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:17:57.570 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36492 150\n [Camera]
17-03-18 01:17:57.770 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:17:58.160 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 01:17:58.160 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 01:17:58.160 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:58.160 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:58.160 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:17:58.160 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 01:17:58.160 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 01:17:58.160 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:58.170 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:58.170 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:17:58.350 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36492 775
17-03-18 01:17:58.500 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:17:58.560 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:17:58.560 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:17:58.560 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:58.560 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:58.560 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:17:58.560 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:17:58.560 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:58.560 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:58.560 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:17:58.570 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:17:58.690 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:17:58.690 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:17:58.690 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:17:58.690 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:17:58.690 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:17:58.690 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:17:58.690 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:17:58.690 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:17:58.690 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:17:58.690 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:17:58.880 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:17:58.880 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:17:58.880 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36492 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-18 01:17:58.880 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:17:58.880 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.166250044612584. ------
17-03-18 01:17:58.890 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:17:58.890 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17284 mm
17-03-18 01:17:58.890 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:17:58.890 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37757, sync = True, waitForSettling = False)
17-03-18 01:17:58.890 -07 000000424 INF: Z Motor: Moving to -0.172840 mm, started at -0.166250 mm, distance = -6.59 um
17-03-18 01:17:58.890 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:17:58.890 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:17:58.890 -07 000000561 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 01:17:58.900 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:17:58.900 -07 000000424 INF: FPGA: Xmit ZDACW 37757\n [Z Motor]
17-03-18 01:17:58.900 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:17:58.910 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:58.910 -07 000000424 INF: FPGA: 'ZDACW 37757' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:17:58.910 -07 000000502 INF: FPGA: Recv YRDPOS 148173
17-03-18 01:17:58.920 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:17:58.920 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:17:58.920 -07 000000561 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:58.920 -07 000000561 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:17:58.920 -07 000000561 INF: Y Motor: Moving 1348 steps-27
17-03-18 01:17:58.930 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:17:58.930 -07 000000474 INF: FPGA: Recv ZDACR 37757
17-03-18 01:17:58.940 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:17:58.940 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:17:58.940 -07 000000424 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:17:59.090 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 01:17:59.100 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:17:59.100 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:59.100 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 01:17:59.100 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:17:59.100 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:17:59.100 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:17:59.100 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:17:59.100 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 01:17:59.110 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:17:59.120 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:17:59.120 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:17:59.310 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 01:17:59.320 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 394 ms overall
17-03-18 01:17:59.360 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:17:59.360 -07 000000424 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:17:59.370 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:17:59.370 -07 000000561 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:17:59.370 -07 000000561 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 01:17:59.370 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.140 mm/sec
17-03-18 01:18:00.320 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:00.320 -07 000000502 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:18:00.330 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:00.330 -07 000000561 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:00.350 -07 000000561 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:18:00.350 -07 000000561 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:18:00.350 -07 000000561 INF: Y Motor: Moved to 73.1763 after 1463 ms (table move)
17-03-18 01:18:00.360 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172840 mm (DAC = 37757)
17-03-18 01:18:00.360 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:00.360 -07 000000585 INF: FPGA: Recv ZSGSRD 36198
17-03-18 01:18:00.370 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:00.370 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:00.370 -07 000000424 INF: FPGA: Recv ZSGSRD 36195
17-03-18 01:18:00.380 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:00.380 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:00.380 -07 000000461 INF: FPGA: Recv ZSGSRD 36197
17-03-18 01:18:00.390 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:00.390 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:00.390 -07 000000474 INF: FPGA: Recv ZSGSRD 36195
17-03-18 01:18:00.400 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:00.400 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:00.400 -07 000000467 INF: FPGA: Recv ZSGSRD 36197
17-03-18 01:18:00.410 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:00.410 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:00.410 -07 000000474 INF: FPGA: Recv ZSGSRD 36200
17-03-18 01:18:00.420 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:00.420 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:00.420 -07 000000561 INF: FPGA: Recv ZSGSRD 36197
17-03-18 01:18:00.430 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:00.430 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:00.430 -07 000000461 INF: FPGA: Recv ZSGSRD 36188
17-03-18 01:18:00.440 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:00.440 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:00.440 -07 000000424 INF: FPGA: Recv ZSGSRD 36190
17-03-18 01:18:00.450 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:00.450 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:00.450 -07 000000461 INF: FPGA: Recv ZSGSRD 36200
17-03-18 01:18:00.460 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:00.460 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:00.460 -07 000000424 INF: FPGA: Recv ZPIEZORD 32129
17-03-18 01:18:00.470 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:00.470 -07 000000569 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.761 V. Piezo Error = -9.0 V.
17-03-18 01:18:00.470 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36196 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36197 (-172.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36188 (-171.9 uncal um), Max = 36200 (-172.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:18:00.470 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36196, posNoise = 4, negNoise = 8
17-03-18 01:18:00.470 -07 000000569 INF: Z Motor: After move to -0.172840, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:00.470 -07 000000569 INF: Z Motor: Settle wait time = 1467 ms, measure time = 110 ms (allowed 150 ms), total time = 1577 ms
17-03-18 01:18:00.470 -07 000000569 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:18:00.510 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 01:18:00.510 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:18:00.510 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:00.510 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:00.510 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:00.510 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:00.510 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:18:00.510 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:00.510 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:00.510 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:18:00.520 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:18:00.520 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:18:00.530 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:18:00.530 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:18:00.530 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:18:00.580 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:18:00.880 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:18:00.880 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:18:00.880 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:18:00.880 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2656069960, 0x0, 559484976) start.
17-03-18 01:18:00.920 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:18:00.920 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 01:18:00.920 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:18:01.000 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2656069960, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 01:18:01.000 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:01.000 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:18:01.000 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:18:01.020 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:01.020 -07 000000585 INF: Autofocus start
17-03-18 01:18:01.020 -07 000000585 INF: MeasureProfile start
17-03-18 01:18:01.020 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:01.030 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:01.030 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:18:01.030 -07 000000585 INF: MeasureProfile done
17-03-18 01:18:01.030 -07 000000585 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:18:01.030 -07 000000585 INF: Autofocus finished
17-03-18 01:18:01.080 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.98264,
17-03-18 01:18:01.230 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:18:01.230 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:18:01.230 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.172854134694315. ----------
17-03-18 01:18:01.230 -07 000000610 INF: Cycle	85	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:18:01.240 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36254, sync = True, waitForSettling = True)
17-03-18 01:18:01.240 -07 000000610 INF: Z Motor: Moving to -0.165960 mm, started at -0.172854 mm, distance = 6.89 um
17-03-18 01:18:01.240 -07 000000610 INF: FPGA: Xmit ZDACW 36254\n [Z Motor]
17-03-18 01:18:01.240 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:18:01.250 -07 000000610 INF: FPGA: 'ZDACW 36254' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:01.250 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:01.250 -07 000000487 INF: FPGA: Recv ZDACR 36254
17-03-18 01:18:01.260 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:01.260 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:18:01.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:01.410 -07 000000487 INF: FPGA: Recv ZSGSRD 35129
17-03-18 01:18:01.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:01.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:01.430 -07 000000501 INF: FPGA: Recv ZSGSRD 35127
17-03-18 01:18:01.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:18:01.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:01.450 -07 000000502 INF: FPGA: Recv ZSGSRD 35121
17-03-18 01:18:01.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:18:01.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:01.460 -07 000000585 INF: FPGA: Recv ZSGSRD 35122
17-03-18 01:18:01.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:01.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:01.470 -07 000000561 INF: FPGA: Recv ZSGSRD 35121
17-03-18 01:18:01.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:01.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:01.480 -07 000000467 INF: FPGA: Recv ZSGSRD 35127
17-03-18 01:18:01.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:01.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:01.490 -07 000000467 INF: FPGA: Recv ZSGSRD 35128
17-03-18 01:18:01.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:01.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:01.500 -07 000000467 INF: FPGA: Recv ZSGSRD 35121
17-03-18 01:18:01.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:01.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:01.510 -07 000000461 INF: FPGA: Recv ZSGSRD 35127
17-03-18 01:18:01.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:01.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:01.520 -07 000000461 INF: FPGA: Recv ZSGSRD 35128
17-03-18 01:18:01.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:01.530 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:01.530 -07 000000487 INF: FPGA: Recv ZPIEZORD 30722
17-03-18 01:18:01.540 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:01.540 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.532 V. Piezo Error = -9.7 V.
17-03-18 01:18:01.540 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35125 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35127 (-165.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35121 (-165.1 uncal um), Max = 35129 (-165.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:18:01.540 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35125, posNoise = 4, negNoise = 4
17-03-18 01:18:01.540 -07 000000610 INF: Z Motor: After move to -0.165960, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:01.540 -07 000000610 INF: Z Motor: MoveAbsStepped took 300 ms)
17-03-18 01:18:01.540 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:01.540 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:01.540 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:01.540 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:01.540 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:18:01.540 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:01.540 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:18:01.540 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:18:01.540 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:18:01.540 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:18:01.540 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:18:01.540 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:18:01.550 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:18:01.550 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:18:01.550 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:18:01.550 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:18:01.550 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:18:01.560 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:18:01.560 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:18:01.560 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:18:01.560 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36430 150\n [Camera]
17-03-18 01:18:01.760 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 01:18:02.150 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:18:02.150 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:18:02.150 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:02.150 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:02.150 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:18:02.150 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:18:02.150 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:18:02.150 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:02.150 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:02.150 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 01:18:02.250 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:18:02.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:18:02.340 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36430 775
17-03-18 01:18:02.490 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:18:02.550 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:18:02.550 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:18:02.550 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:02.550 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:18:02.550 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:18:02.550 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:02.550 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:02.560 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:18:02.560 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:02.560 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:18:02.680 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:18:02.680 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:18:02.680 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:02.680 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:02.680 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:18:02.680 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:18:02.680 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:18:02.680 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:02.680 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:02.680 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 01:18:02.870 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:18:02.870 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:18:02.870 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36430 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-18 01:18:02.880 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:18:02.880 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.165973803490489. ------
17-03-18 01:18:02.880 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:02.880 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17230 mm
17-03-18 01:18:02.880 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:18:02.880 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:18:02.880 -07 000000585 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 01:18:02.880 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37639, sync = True, waitForSettling = False)
17-03-18 01:18:02.880 -07 000000467 INF: Z Motor: Moving to -0.172300 mm, started at -0.165974 mm, distance = -6.33 um
17-03-18 01:18:02.880 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:02.890 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:02.890 -07 000000467 INF: FPGA: Xmit ZDACW 37639\n [Z Motor]
17-03-18 01:18:02.890 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:18:02.900 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:02.900 -07 000000467 INF: FPGA: 'ZDACW 37639' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:18:02.900 -07 000000501 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:18:02.910 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:18:02.910 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:18:02.910 -07 000000585 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:02.910 -07 000000585 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:18:02.910 -07 000000585 INF: Y Motor: Moving 1354 steps-34
17-03-18 01:18:02.920 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:02.920 -07 000000502 INF: FPGA: Recv ZDACR 37639
17-03-18 01:18:02.930 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:18:02.930 -07 000000467 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 01:18:02.930 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:18:03.080 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:18:03.080 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:18:03.080 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:03.080 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:18:03.080 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:18:03.080 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:03.090 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:03.090 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:18:03.090 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:18:03.090 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:18:03.110 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:18:03.110 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:18:03.300 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 01:18:03.300 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:18:03.340 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:03.340 -07 000000611 INF: FPGA: Recv YRDPOS 151568
17-03-18 01:18:03.350 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:18:03.350 -07 000000585 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:03.350 -07 000000585 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:18:03.350 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-18 01:18:04.300 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:04.300 -07 000000487 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:18:04.310 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:04.310 -07 000000585 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:04.320 -07 000000585 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:18:04.320 -07 000000585 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:18:04.320 -07 000000585 INF: Y Motor: Moved to 74.0083 after 1443 ms (table move)
17-03-18 01:18:04.330 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172300 mm (DAC = 37639)
17-03-18 01:18:04.330 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:04.330 -07 000000487 INF: FPGA: Recv ZSGSRD 36117
17-03-18 01:18:04.340 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:04.340 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:04.340 -07 000000501 INF: FPGA: Recv ZSGSRD 36107
17-03-18 01:18:04.350 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:04.350 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:04.350 -07 000000467 INF: FPGA: Recv ZSGSRD 36106
17-03-18 01:18:04.360 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:04.360 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:04.360 -07 000000461 INF: FPGA: Recv ZSGSRD 36105
17-03-18 01:18:04.370 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:04.370 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:04.370 -07 000000501 INF: FPGA: Recv ZSGSRD 36110
17-03-18 01:18:04.380 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:04.380 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:04.380 -07 000000461 INF: FPGA: Recv ZSGSRD 36113
17-03-18 01:18:04.390 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:04.390 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:04.390 -07 000000467 INF: FPGA: Recv ZSGSRD 36112
17-03-18 01:18:04.400 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:04.400 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:04.400 -07 000000501 INF: FPGA: Recv ZSGSRD 36113
17-03-18 01:18:04.410 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:04.410 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:04.410 -07 000000585 INF: FPGA: Recv ZSGSRD 36116
17-03-18 01:18:04.420 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:04.420 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:04.420 -07 000000611 INF: FPGA: Recv ZSGSRD 36111
17-03-18 01:18:04.430 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:04.430 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:04.430 -07 000000467 INF: FPGA: Recv ZPIEZORD 32029
17-03-18 01:18:04.440 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:04.440 -07 000000561 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.743 V. Piezo Error = -9.0 V.
17-03-18 01:18:04.440 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36111 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36112 (-171.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36105 (-171.4 uncal um), Max = 36117 (-171.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:18:04.440 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36111, posNoise = 6, negNoise = 6
17-03-18 01:18:04.440 -07 000000561 INF: Z Motor: After move to -0.172300, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:04.440 -07 000000561 INF: Z Motor: Settle wait time = 1446 ms, measure time = 108 ms (allowed 150 ms), total time = 1554 ms
17-03-18 01:18:04.440 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:18:04.490 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 01:18:04.490 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:18:04.490 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:04.490 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:04.490 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:04.490 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:04.490 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:18:04.490 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:04.490 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:18:04.490 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:18:04.500 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:18:04.500 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:18:04.510 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:18:04.510 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:18:04.510 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:18:04.560 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:18:04.860 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:18:04.860 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:18:04.860 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:18:04.860 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2670746040, 0x0, 559484976) start.
17-03-18 01:18:04.900 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:18:04.900 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 01:18:04.900 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 01:18:04.990 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2670746040, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:18:04.990 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:04.990 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:18:04.990 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:18:05.000 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:05.000 -07 000000487 INF: Autofocus start
17-03-18 01:18:05.000 -07 000000487 INF: MeasureProfile start
17-03-18 01:18:05.000 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:05.010 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:05.010 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:18:05.010 -07 000000487 INF: MeasureProfile done
17-03-18 01:18:05.010 -07 000000487 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:18:05.010 -07 000000487 INF: Autofocus finished
17-03-18 01:18:05.210 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:18:05.210 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:18:05.210 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.172308076662265. ----------
17-03-18 01:18:05.210 -07 000000610 INF: Cycle	85	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:18:05.220 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36172, sync = True, waitForSettling = True)
17-03-18 01:18:05.220 -07 000000610 INF: Z Motor: Moving to -0.165585 mm, started at -0.172308 mm, distance = 6.72 um
17-03-18 01:18:05.220 -07 000000610 INF: FPGA: Xmit ZDACW 36172\n [Z Motor]
17-03-18 01:18:05.220 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:18:05.230 -07 000000610 INF: FPGA: 'ZDACW 36172' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:18:05.230 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:05.230 -07 000000585 INF: FPGA: Recv ZDACR 36172
17-03-18 01:18:05.240 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:05.240 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:18:05.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:05.390 -07 000000487 INF: FPGA: Recv ZSGSRD 35067
17-03-18 01:18:05.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:05.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:05.400 -07 000000501 INF: FPGA: Recv ZSGSRD 35069
17-03-18 01:18:05.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:05.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:05.410 -07 000000561 INF: FPGA: Recv ZSGSRD 35064
17-03-18 01:18:05.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:05.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:05.420 -07 000000611 INF: FPGA: Recv ZSGSRD 35067
17-03-18 01:18:05.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:05.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:05.430 -07 000000502 INF: FPGA: Recv ZSGSRD 35069
17-03-18 01:18:05.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:05.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:05.440 -07 000000501 INF: FPGA: Recv ZSGSRD 35067
17-03-18 01:18:05.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:05.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:05.450 -07 000000467 INF: FPGA: Recv ZSGSRD 35065
17-03-18 01:18:05.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:05.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:05.460 -07 000000611 INF: FPGA: Recv ZSGSRD 35063
17-03-18 01:18:05.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:05.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:05.470 -07 000000487 INF: FPGA: Recv ZSGSRD 35064
17-03-18 01:18:05.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:05.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:05.480 -07 000000461 INF: FPGA: Recv ZSGSRD 35065
17-03-18 01:18:05.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:05.490 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:05.490 -07 000000561 INF: FPGA: Recv ZPIEZORD 30673
17-03-18 01:18:05.500 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:05.500 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.519 V. Piezo Error = -9.7 V.
17-03-18 01:18:05.500 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.6 um, Read 10 ADC samples: Avg = 35066 (-164.7 uncal um), Error = 0.9 uncal um, Median = 35066 (-164.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35063 (-164.7 uncal um), Max = 35069 (-164.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:18:05.500 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35066, posNoise = 3, negNoise = 3
17-03-18 01:18:05.500 -07 000000610 INF: Z Motor: After move to -0.165585, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:05.500 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:18:05.500 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:05.500 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:05.500 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:05.500 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:18:05.500 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:05.500 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:05.500 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:18:05.500 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:18:05.500 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:18:05.500 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:18:05.500 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 01:18:05.500 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:18:05.510 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:18:05.510 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:18:05.510 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:18:05.510 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:18:05.510 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:18:05.510 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:18:05.520 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:18:05.520 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:18:05.520 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36348 150\n [Camera]
17-03-18 01:18:05.720 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:18:06.110 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:18:06.110 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:18:06.110 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:06.110 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:06.110 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 01:18:06.110 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:18:06.110 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:18:06.110 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:06.110 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:06.110 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 01:18:06.300 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36348 775
17-03-18 01:18:06.440 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.988112,
17-03-18 01:18:06.460 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:18:06.510 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:18:06.510 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:18:06.510 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:06.510 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:18:06.510 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:18:06.510 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:06.510 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:18:06.510 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:18:06.510 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:18:06.520 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:18:06.640 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:18:06.640 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:18:06.640 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:06.640 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:06.640 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 01:18:06.640 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:18:06.640 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:18:06.640 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:06.780 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:06.780 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:18:06.830 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:18:06.830 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:18:06.830 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36348 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-18 01:18:06.830 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:18:06.830 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.165594774974125. ------
17-03-18 01:18:06.840 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:06.840 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17160 mm
17-03-18 01:18:06.840 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:18:06.840 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:06.840 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:18:06.840 -07 000000487 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 01:18:06.840 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 37486, sync = True, waitForSettling = False)
17-03-18 01:18:06.840 -07 000000611 INF: Z Motor: Moving to -0.171600 mm, started at -0.165595 mm, distance = -6.01 um
17-03-18 01:18:06.850 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:18:06.850 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:06.850 -07 000000502 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:18:06.860 -07 000000611 INF: FPGA: Xmit ZDACW 37486\n [Z Motor]
17-03-18 01:18:06.860 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:18:06.860 -07 000000487 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:06.860 -07 000000487 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:18:06.860 -07 000000487 INF: Y Motor: Moving 1351 steps-30
17-03-18 01:18:06.860 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:18:06.870 -07 000000611 INF: FPGA: 'ZDACW 37486' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:18:06.870 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:18:06.880 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:18:06.890 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:06.890 -07 000000461 INF: FPGA: Recv ZDACR 37486
17-03-18 01:18:06.900 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:18:06.900 -07 000000611 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 01:18:07.040 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 01:18:07.050 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:18:07.050 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:07.050 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:18:07.050 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:18:07.070 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:18:07.070 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 01:18:07.170 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:18:07.170 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:18:07.170 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:07.180 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:18:07.180 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 538 ms.
17-03-18 01:18:07.250 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:18:07.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:18:07.250 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 01:18:07.250 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-18 01:18:07.280 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:07.280 -07 000000569 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:18:07.290 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:18:07.290 -07 000000487 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:07.290 -07 000000487 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 01:18:07.290 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-18 01:18:08.240 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:08.240 -07 000000461 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:18:08.250 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:08.250 -07 000000487 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:08.260 -07 000000487 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:18:08.260 -07 000000487 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:18:08.260 -07 000000487 INF: Y Motor: Moved to 74.8315 after 1422 ms (table move)
17-03-18 01:18:08.270 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171600 mm (DAC = 37486)
17-03-18 01:18:08.270 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:08.270 -07 000000487 INF: FPGA: Recv ZSGSRD 36005
17-03-18 01:18:08.280 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:18:08.280 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:08.280 -07 000000585 INF: FPGA: Recv ZSGSRD 36002
17-03-18 01:18:08.290 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:08.290 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:08.290 -07 000000585 INF: FPGA: Recv ZSGSRD 36000
17-03-18 01:18:08.300 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:08.300 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:08.300 -07 000000585 INF: FPGA: Recv ZSGSRD 35997
17-03-18 01:18:08.310 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:08.310 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:08.310 -07 000000585 INF: FPGA: Recv ZSGSRD 36001
17-03-18 01:18:08.320 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:08.320 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:08.320 -07 000000461 INF: FPGA: Recv ZSGSRD 35999
17-03-18 01:18:08.330 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:08.330 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:08.330 -07 000000487 INF: FPGA: Recv ZSGSRD 36005
17-03-18 01:18:08.340 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:08.340 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:08.340 -07 000000502 INF: FPGA: Recv ZSGSRD 36006
17-03-18 01:18:08.350 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:08.350 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:08.350 -07 000000502 INF: FPGA: Recv ZSGSRD 36004
17-03-18 01:18:08.360 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:08.360 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:08.360 -07 000000502 INF: FPGA: Recv ZSGSRD 36001
17-03-18 01:18:08.370 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:08.370 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:08.370 -07 000000502 INF: FPGA: Recv ZPIEZORD 31924
17-03-18 01:18:08.380 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:08.380 -07 000000625 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -9.0 V.
17-03-18 01:18:08.380 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36002 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36002 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35997 (-170.7 uncal um), Max = 36006 (-170.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:18:08.380 -07 000000625 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36002, posNoise = 4, negNoise = 5
17-03-18 01:18:08.380 -07 000000625 INF: Z Motor: After move to -0.171600, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:08.380 -07 000000625 INF: Z Motor: Settle wait time = 1426 ms, measure time = 109 ms (allowed 150 ms), total time = 1535 ms
17-03-18 01:18:08.380 -07 000000625 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:18:08.430 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-18 01:18:08.430 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:18:08.430 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:08.430 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:08.430 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:08.430 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:08.430 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:18:08.430 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:08.430 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:08.430 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:18:08.440 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:18:08.440 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:18:08.450 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:18:08.450 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:18:08.450 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:18:08.500 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:18:08.800 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:18:08.800 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:18:08.800 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:18:08.800 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 01:18:08.840 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:18:08.840 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 01:18:08.840 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:18:08.920 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 01:18:08.920 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:08.920 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:18:08.920 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 01:18:08.940 -07 000000487 INF: Autofocus start
17-03-18 01:18:08.940 -07 000000487 INF: MeasureProfile start
17-03-18 01:18:08.940 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:08.940 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:08.950 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:18:08.950 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:18:08.950 -07 000000487 INF: MeasureProfile done
17-03-18 01:18:08.950 -07 000000487 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:18:08.950 -07 000000487 INF: Autofocus finished
17-03-18 01:18:09.150 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:18:09.150 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:18:09.160 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.171607837538813. ----------
17-03-18 01:18:09.160 -07 000000610 INF: Cycle	85	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:18:09.160 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35966, sync = True, waitForSettling = True)
17-03-18 01:18:09.160 -07 000000610 INF: Z Motor: Moving to -0.164642 mm, started at -0.171608 mm, distance = 6.97 um
17-03-18 01:18:09.160 -07 000000610 INF: FPGA: Xmit ZDACW 35966\n [Z Motor]
17-03-18 01:18:09.170 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:18:09.170 -07 000000610 INF: FPGA: 'ZDACW 35966' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:18:09.170 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:09.170 -07 000000569 INF: FPGA: Recv ZDACR 35966
17-03-18 01:18:09.180 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:18:09.180 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:18:09.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:09.330 -07 000000501 INF: FPGA: Recv ZSGSRD 34919
17-03-18 01:18:09.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:09.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:09.340 -07 000000561 INF: FPGA: Recv ZSGSRD 34918
17-03-18 01:18:09.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:09.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:09.350 -07 000000626 INF: FPGA: Recv ZSGSRD 34920
17-03-18 01:18:09.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:09.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:09.360 -07 000000502 INF: FPGA: Recv ZSGSRD 34919
17-03-18 01:18:09.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:09.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:09.370 -07 000000626 INF: FPGA: Recv ZSGSRD 34922
17-03-18 01:18:09.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:09.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:09.380 -07 000000502 INF: FPGA: Recv ZSGSRD 34918
17-03-18 01:18:09.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:09.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:09.390 -07 000000626 INF: FPGA: Recv ZSGSRD 34920
17-03-18 01:18:09.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:09.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:09.400 -07 000000625 INF: FPGA: Recv ZSGSRD 34918
17-03-18 01:18:09.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:09.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:09.410 -07 000000561 INF: FPGA: Recv ZSGSRD 34920
17-03-18 01:18:09.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:09.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:09.420 -07 000000625 INF: FPGA: Recv ZSGSRD 34921
17-03-18 01:18:09.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:09.430 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:09.430 -07 000000569 INF: FPGA: Recv ZPIEZORD 30482
17-03-18 01:18:09.440 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:09.440 -07 000000610 INF: Z Motor: Piezo is near 45.1 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.488 V. Piezo Error = -9.8 V.
17-03-18 01:18:09.440 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.6 um, Read 10 ADC samples: Avg = 34920 (-163.8 uncal um), Error = 0.8 uncal um, Median = 34920 (-163.8 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 34918 (-163.8 uncal um), Max = 34922 (-163.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:18:09.440 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34920, posNoise = 2, negNoise = 2
17-03-18 01:18:09.440 -07 000000610 INF: Z Motor: After move to -0.164642, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:09.440 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 01:18:09.440 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:09.440 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:09.440 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:09.440 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:09.440 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:18:09.440 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:18:09.440 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:18:09.440 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:09.440 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:18:09.440 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:18:09.440 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:09.440 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:18:09.450 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:18:09.450 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:18:09.450 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:18:09.450 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:18:09.460 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:18:09.460 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:18:09.460 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:18:09.460 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:18:09.460 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36143 150\n [Camera]
17-03-18 01:18:09.660 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:18:10.050 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:18:10.050 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:18:10.050 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:10.050 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:18:10.050 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:18:10.050 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:10.050 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:10.050 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:18:10.060 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:10.060 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:18:10.240 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36143 775
17-03-18 01:18:10.390 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:18:10.450 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:18:10.450 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:18:10.450 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:10.450 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:10.450 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:18:10.460 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:18:10.460 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:18:10.460 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:10.460 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:10.470 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:18:10.580 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:18:10.580 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:18:10.580 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:10.580 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:18:10.580 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:18:10.580 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:10.700 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:10.700 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:18:10.700 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:10.700 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:18:10.770 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:18:10.770 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:18:10.770 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36143 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-18 01:18:11.090 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 01:18:11.090 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 01:18:11.090 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:11.090 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:11.090 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 01:18:11.090 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:18:11.090 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:11.090 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:11.100 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-18 01:18:11.100 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:18:11.100 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 01:18:11.140 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-18 01:18:11.140 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:18:11.180 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 01:18:11.180 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 01:18:11.180 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:18:11.190 -07 000000561 INF: FPGA: Recv EMCUR 
17-03-18 01:18:11.190 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:18:11.190 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 01:18:11.690 -07 000000569 INF: FPGA: Recv EMIN
17-03-18 01:18:11.690 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 01:18:11.690 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 01:18:11.690 -07 000000461 INF: FPGA: Recv EMCUR 
17-03-18 01:18:11.700 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:11.700 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:18:11.700 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.164656840001428. ------
17-03-18 01:18:11.700 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:11.700 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13928 mm
17-03-18 01:18:11.700 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:18:11.710 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30425, sync = True, waitForSettling = False)
17-03-18 01:18:11.710 -07 000000626 INF: Z Motor: Moving to -0.139277 mm, started at -0.164657 mm, distance = 25.38 um
17-03-18 01:18:11.710 -07 000000626 INF: FPGA: Xmit ZDACW 30425\n [Z Motor]
17-03-18 01:18:11.710 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:11.710 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:18:11.710 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:18:11.710 -07 000000569 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-18 01:18:11.710 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:18:11.720 -07 000000626 INF: FPGA: 'ZDACW 30425' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:11.720 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:11.720 -07 000000501 INF: FPGA: Recv YRDPOS 153257
17-03-18 01:18:11.730 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:18:11.730 -07 000000569 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:11.730 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:18:11.730 -07 000000569 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 01:18:11.730 -07 000000569 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:18:11.740 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:11.740 -07 000000501 INF: FPGA: Recv ZDACR 30425
17-03-18 01:18:11.750 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 01:18:11.750 -07 000000569 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:18:11.750 -07 000000626 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 01:18:11.810 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.970374,
17-03-18 01:18:11.930 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:18:11.930 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-18 01:18:12.250 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:18:12.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:18:13.370 -07 000000461 INF: FPGA: Recv YMVTO 122703 23904
17-03-18 01:18:13.370 -07 000000569 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1643 ms overall
17-03-18 01:18:13.370 -07 000000569 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:18:13.370 -07 000000569 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23904 steps (14.940 mm). Slippage = 0.020 mm (0.00%).
17-03-18 01:18:13.370 -07 000000569 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1643 ms, distance = 14.919 mm, average velocity = 9.080 mm/sec
17-03-18 01:18:16.220 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:16.220 -07 000000625 INF: FPGA: Recv YRDPOS 122698
17-03-18 01:18:16.230 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:16.230 -07 000000569 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:16.260 -07 000000569 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:18:16.260 -07 000000569 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 01:18:16.260 -07 000000569 INF: Y Motor: Moved to 59.9111 after 4554 ms
17-03-18 01:18:16.260 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139277 mm (DAC = 30425)
17-03-18 01:18:16.260 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:16.270 -07 000000487 INF: FPGA: Recv ZSGSRD 30971
17-03-18 01:18:16.270 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:18:16.270 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:16.270 -07 000000502 INF: FPGA: Recv ZSGSRD 30974
17-03-18 01:18:16.280 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:18:16.280 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:16.280 -07 000000487 INF: FPGA: Recv ZSGSRD 30970
17-03-18 01:18:16.290 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:16.290 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:16.290 -07 000000569 INF: FPGA: Recv ZSGSRD 30976
17-03-18 01:18:16.300 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:16.300 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:16.300 -07 000000487 INF: FPGA: Recv ZSGSRD 30972
17-03-18 01:18:16.310 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:16.310 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:16.310 -07 000000502 INF: FPGA: Recv ZSGSRD 30967
17-03-18 01:18:16.320 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:16.320 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:16.320 -07 000000487 INF: FPGA: Recv ZSGSRD 30972
17-03-18 01:18:16.330 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:16.330 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:16.330 -07 000000424 INF: FPGA: Recv ZSGSRD 30967
17-03-18 01:18:16.340 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:16.340 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:16.340 -07 000000487 INF: FPGA: Recv ZSGSRD 30966
17-03-18 01:18:16.350 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:16.350 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:16.350 -07 000000502 INF: FPGA: Recv ZSGSRD 30970
17-03-18 01:18:16.360 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:16.360 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:16.360 -07 000000461 INF: FPGA: Recv ZPIEZORD 26373
17-03-18 01:18:16.370 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:16.370 -07 000000561 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -10.1 V.
17-03-18 01:18:16.370 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30970 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30970 (-138.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30966 (-138.5 uncal um), Max = 30976 (-138.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:18:16.370 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30970, posNoise = 6, negNoise = 4
17-03-18 01:18:16.370 -07 000000561 INF: Z Motor: After move to -0.139277, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:16.370 -07 000000561 INF: Z Motor: Settle wait time = 4558 ms, measure time = 102 ms (allowed 150 ms), total time = 4660 ms
17-03-18 01:18:16.370 -07 000000561 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:18:16.420 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4712 ms
17-03-18 01:18:16.420 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:18:16.420 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:16.420 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:16.420 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:16.420 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:16.420 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:18:16.420 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:16.420 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:16.420 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:18:16.450 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 01:18:16.450 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:18:16.450 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 01:18:16.450 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:18:16.470 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:18:16.470 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 01:18:16.470 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:18:16.510 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:18:16.810 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:18:16.810 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:18:16.810 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:18:16.820 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 01:18:16.850 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:18:16.850 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 01:18:16.850 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:18:16.940 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 01:18:16.940 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:16.940 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:18:16.940 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 01:18:16.950 -07 000000561 INF: Image SNR check: start
17-03-18 01:18:16.950 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:16.950 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:16.960 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:16.960 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:18:16.970 -07 000000561 INF: Image SNR check: pass  [peak (Max-Min)=159.51]
17-03-18 01:18:16.970 -07 000000561 INF: Autofocus start
17-03-18 01:18:16.970 -07 000000561 INF: MeasureProfile start
17-03-18 01:18:16.990 -07 000000561 INF: MeasureProfile done
17-03-18 01:18:16.990 -07 000000561 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:18:16.990 -07 000000561 INF: Autofocus finished
17-03-18 01:18:17.160 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:18:17.160 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:18:17.160 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139281202041472. ----------
17-03-18 01:18:17.160 -07 000000610 INF: Cycle	85	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:18:17.170 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28932, sync = True, waitForSettling = True)
17-03-18 01:18:17.170 -07 000000610 INF: Z Motor: Moving to -0.132442 mm, started at -0.139281 mm, distance = 6.84 um
17-03-18 01:18:17.180 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.960826,
17-03-18 01:18:17.190 -07 000000610 INF: FPGA: Xmit ZDACW 28932\n [Z Motor]
17-03-18 01:18:17.190 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:18:17.200 -07 000000610 INF: FPGA: 'ZDACW 28932' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:18:17.210 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:17.210 -07 000000502 INF: FPGA: Recv ZDACR 28932
17-03-18 01:18:17.220 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:18:17.220 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:18:17.250 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:18:17.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:18:17.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:17.370 -07 000000561 INF: FPGA: Recv ZSGSRD 29902
17-03-18 01:18:17.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:17.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:17.380 -07 000000461 INF: FPGA: Recv ZSGSRD 29908
17-03-18 01:18:17.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:17.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:17.390 -07 000000561 INF: FPGA: Recv ZSGSRD 29904
17-03-18 01:18:17.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:17.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:17.400 -07 000000626 INF: FPGA: Recv ZSGSRD 29905
17-03-18 01:18:17.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:17.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:17.410 -07 000000561 INF: FPGA: Recv ZSGSRD 29911
17-03-18 01:18:17.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:17.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:17.420 -07 000000626 INF: FPGA: Recv ZSGSRD 29904
17-03-18 01:18:17.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:17.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:17.430 -07 000000561 INF: FPGA: Recv ZSGSRD 29898
17-03-18 01:18:17.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:17.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:17.440 -07 000000626 INF: FPGA: Recv ZSGSRD 29903
17-03-18 01:18:17.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:17.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:17.450 -07 000000561 INF: FPGA: Recv ZSGSRD 29906
17-03-18 01:18:17.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:17.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:17.460 -07 000000626 INF: FPGA: Recv ZSGSRD 29908
17-03-18 01:18:17.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:17.470 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:17.470 -07 000000561 INF: FPGA: Recv ZPIEZORD 25230
17-03-18 01:18:17.480 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:17.480 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.415 V. Piezo Error = -10.2 V.
17-03-18 01:18:17.480 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29905 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29904 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29898 (-131.6 uncal um), Max = 29911 (-131.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:18:17.480 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29905, posNoise = 6, negNoise = 7
17-03-18 01:18:17.480 -07 000000610 INF: Z Motor: After move to -0.132442, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:17.480 -07 000000610 INF: Z Motor: MoveAbsStepped took 310 ms)
17-03-18 01:18:17.480 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:17.480 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:17.480 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:17.480 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:18:17.480 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:17.480 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:18:17.480 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:18:17.480 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:17.480 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:18:17.480 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:18:17.480 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:18:17.480 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:18:17.480 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:18:17.480 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:18:17.490 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:18:17.490 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:18:17.500 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 01:18:17.500 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:18:17.500 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:18:17.500 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:18:17.510 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:18:17.510 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-18 01:18:17.540 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29109 150\n [Camera]
17-03-18 01:18:17.730 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:18:18.120 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:18:18.120 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:18:18.130 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:18.130 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:18.130 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) start.
17-03-18 01:18:18.130 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:18:18.130 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:18:18.130 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:18.130 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:18.140 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:18:18.320 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29109 775
17-03-18 01:18:18.470 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:18:18.520 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 01:18:18.520 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:18:18.520 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:18.520 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:18:18.520 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:18:18.520 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:18.520 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:18.520 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:18:18.530 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:18.530 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:18:18.660 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:18:18.660 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:18:18.660 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:18.660 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:18:18.660 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:18:18.660 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:18.660 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:18:18.660 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:18.660 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:18.660 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:18:18.850 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:18:18.850 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:18:18.850 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29109 150' command took 2 ms to send, 1302 ms to get response, and 1333 ms overall
17-03-18 01:18:18.850 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:18:18.850 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.132439416110496. ------
17-03-18 01:18:18.850 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:18.850 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13865 mm
17-03-18 01:18:18.850 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:18:18.850 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:18:18.850 -07 000000569 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 01:18:18.860 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:18.860 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:18.860 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:18:18.860 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30289, sync = True, waitForSettling = False)
17-03-18 01:18:18.860 -07 000000501 INF: Z Motor: Moving to -0.138654 mm, started at -0.132439 mm, distance = -6.21 um
17-03-18 01:18:18.860 -07 000000625 INF: FPGA: Recv YRDPOS 122698
17-03-18 01:18:18.870 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:18.870 -07 000000501 INF: FPGA: Xmit ZDACW 30289\n [Z Motor]
17-03-18 01:18:18.870 -07 000000569 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:18.870 -07 000000569 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:18:18.870 -07 000000569 INF: Y Motor: Moving 1330 steps2
17-03-18 01:18:18.870 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:18:18.880 -07 000000501 INF: FPGA: 'ZDACW 30289' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:18:18.880 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:18:18.890 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:18:18.900 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:18.900 -07 000000461 INF: FPGA: Recv ZDACR 30289
17-03-18 01:18:18.910 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:18:18.910 -07 000000501 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 01:18:19.060 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:18:19.060 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:18:19.060 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:19.060 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 01:18:19.060 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:18:19.060 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:19.070 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:18:19.070 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 01:18:19.070 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:18:19.080 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:18:19.080 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:18:19.080 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:18:19.260 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:18:19.260 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 396 ms overall
17-03-18 01:18:19.300 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:19.300 -07 000000487 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:18:19.310 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:18:19.310 -07 000000569 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:19.310 -07 000000569 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:18:19.310 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.831 mm, average velocity = 2.089 mm/sec
17-03-18 01:18:20.260 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:20.260 -07 000000625 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:18:20.270 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:20.270 -07 000000569 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:20.290 -07 000000569 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:18:20.290 -07 000000569 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:18:20.290 -07 000000569 INF: Y Motor: Moved to 60.7329 after 1438 ms (table move)
17-03-18 01:18:20.300 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138654 mm (DAC = 30289)
17-03-18 01:18:20.300 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:20.300 -07 000000625 INF: FPGA: Recv ZSGSRD 30874
17-03-18 01:18:20.310 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:18:20.310 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:20.310 -07 000000461 INF: FPGA: Recv ZSGSRD 30871
17-03-18 01:18:20.320 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:20.320 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:20.320 -07 000000501 INF: FPGA: Recv ZSGSRD 30874
17-03-18 01:18:20.330 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:20.330 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:20.330 -07 000000487 INF: FPGA: Recv ZSGSRD 30880
17-03-18 01:18:20.340 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:20.340 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:20.340 -07 000000625 INF: FPGA: Recv ZSGSRD 30878
17-03-18 01:18:20.350 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:20.350 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:20.350 -07 000000502 INF: FPGA: Recv ZSGSRD 30877
17-03-18 01:18:20.360 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:20.360 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:20.360 -07 000000461 INF: FPGA: Recv ZSGSRD 30872
17-03-18 01:18:20.370 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:20.370 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:20.370 -07 000000569 INF: FPGA: Recv ZSGSRD 30871
17-03-18 01:18:20.380 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:20.380 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:20.380 -07 000000626 INF: FPGA: Recv ZSGSRD 30872
17-03-18 01:18:20.390 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:20.390 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:20.390 -07 000000502 INF: FPGA: Recv ZSGSRD 30866
17-03-18 01:18:20.400 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:20.400 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:20.400 -07 000000625 INF: FPGA: Recv ZPIEZORD 26542
17-03-18 01:18:20.410 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:20.410 -07 000000561 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.622 V. Piezo Error = -9.5 V.
17-03-18 01:18:20.410 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30874 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30873 (-137.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30866 (-137.8 uncal um), Max = 30880 (-137.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:18:20.410 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30874, posNoise = 6, negNoise = 8
17-03-18 01:18:20.410 -07 000000561 INF: Z Motor: After move to -0.138654, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:20.410 -07 000000561 INF: Z Motor: Settle wait time = 1440 ms, measure time = 109 ms (allowed 150 ms), total time = 1549 ms
17-03-18 01:18:20.410 -07 000000561 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:18:20.460 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 01:18:20.460 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:18:20.460 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:20.460 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:20.460 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:20.460 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:20.460 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:18:20.460 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:20.460 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:20.460 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:18:20.470 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:18:20.470 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:18:20.480 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:18:20.480 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:18:20.480 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:18:20.530 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:18:20.830 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:18:20.830 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:18:20.830 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:18:20.940 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:18:20.940 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 01:18:20.940 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2621519688, 0x0, 559484976) start.
17-03-18 01:18:20.940 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 445 ms to get response, and 456 ms overall
17-03-18 01:18:21.070 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2621519688, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:18:21.070 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:21.070 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:18:21.070 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 238 ms.
17-03-18 01:18:21.140 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:21.140 -07 000000625 INF: Autofocus start
17-03-18 01:18:21.140 -07 000000625 INF: MeasureProfile start
17-03-18 01:18:21.140 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:21.150 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:21.150 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:18:21.150 -07 000000625 INF: MeasureProfile done
17-03-18 01:18:21.150 -07 000000625 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:18:21.150 -07 000000625 INF: Autofocus finished
17-03-18 01:18:21.350 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:18:21.350 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 01:18:21.350 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.138664477675863. ----------
17-03-18 01:18:21.360 -07 000000610 INF: Cycle	85	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:18:21.360 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28813, sync = True, waitForSettling = True)
17-03-18 01:18:21.360 -07 000000610 INF: Z Motor: Moving to -0.131897 mm, started at -0.138664 mm, distance = 6.77 um
17-03-18 01:18:21.360 -07 000000610 INF: FPGA: Xmit ZDACW 28813\n [Z Motor]
17-03-18 01:18:21.360 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:18:21.370 -07 000000610 INF: FPGA: 'ZDACW 28813' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:18:21.370 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:21.370 -07 000000467 INF: FPGA: Recv ZDACR 28813
17-03-18 01:18:21.380 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:21.380 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:18:21.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:21.530 -07 000000461 INF: FPGA: Recv ZSGSRD 29819
17-03-18 01:18:21.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:21.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:21.540 -07 000000626 INF: FPGA: Recv ZSGSRD 29824
17-03-18 01:18:21.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:21.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:21.550 -07 000000626 INF: FPGA: Recv ZSGSRD 29819
17-03-18 01:18:21.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:21.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:21.560 -07 000000626 INF: FPGA: Recv ZSGSRD 29822
17-03-18 01:18:21.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:21.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:21.570 -07 000000461 INF: FPGA: Recv ZSGSRD 29826
17-03-18 01:18:21.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:21.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:21.580 -07 000000461 INF: FPGA: Recv ZSGSRD 29822
17-03-18 01:18:21.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:21.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:21.590 -07 000000626 INF: FPGA: Recv ZSGSRD 29826
17-03-18 01:18:21.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:21.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:21.600 -07 000000618 INF: FPGA: Recv ZSGSRD 29817
17-03-18 01:18:21.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:21.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:21.610 -07 000000618 INF: FPGA: Recv ZSGSRD 29825
17-03-18 01:18:21.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:21.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:21.620 -07 000000618 INF: FPGA: Recv ZSGSRD 29825
17-03-18 01:18:21.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:21.630 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:21.630 -07 000000618 INF: FPGA: Recv ZPIEZORD 25162
17-03-18 01:18:21.640 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:21.640 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -10.2 V.
17-03-18 01:18:21.640 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29822 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29823 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29817 (-131.1 uncal um), Max = 29826 (-131.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:18:21.640 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29822, posNoise = 4, negNoise = 5
17-03-18 01:18:21.640 -07 000000610 INF: Z Motor: After move to -0.131897, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:21.640 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:18:21.640 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:21.640 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:21.640 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:21.640 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:18:21.640 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:21.640 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:21.640 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:18:21.640 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:18:21.640 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:18:21.640 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:18:21.640 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:18:21.640 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:18:21.650 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:18:21.650 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:18:21.650 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:18:21.650 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:18:21.660 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:18:21.660 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:18:21.660 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:18:21.660 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:18:21.660 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28990 150\n [Camera]
17-03-18 01:18:21.870 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 01:18:22.250 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:18:22.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:18:22.260 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:18:22.260 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:18:22.260 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:22.260 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:18:22.260 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:18:22.260 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:22.260 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:22.260 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-18 01:18:22.260 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:22.260 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:18:22.450 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28990 775
17-03-18 01:18:22.570 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.975845,
17-03-18 01:18:22.600 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:18:22.650 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:18:22.650 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:18:22.650 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:22.660 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:22.660 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:18:22.660 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:18:22.660 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:18:22.660 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:22.660 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:22.670 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:18:22.790 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:18:22.790 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:18:22.790 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:22.790 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:18:22.790 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:18:22.790 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:22.900 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:22.900 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:18:22.900 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:22.900 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 01:18:22.980 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:18:22.980 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:18:22.980 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28990 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:18:22.980 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:18:22.980 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.13190620650273. ------
17-03-18 01:18:22.980 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:22.980 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13855 mm
17-03-18 01:18:22.980 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:18:22.990 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:22.990 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:18:22.990 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:18:22.990 -07 000000487 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 01:18:22.990 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:22.990 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 30267, sync = True, waitForSettling = False)
17-03-18 01:18:22.990 -07 000000467 INF: Z Motor: Moving to -0.138553 mm, started at -0.131906 mm, distance = -6.65 um
17-03-18 01:18:22.990 -07 000000561 INF: FPGA: Recv YRDPOS 124382
17-03-18 01:18:23.000 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:18:23.000 -07 000000487 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:23.000 -07 000000467 INF: FPGA: Xmit ZDACW 30267\n [Z Motor]
17-03-18 01:18:23.000 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:18:23.000 -07 000000487 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:18:23.000 -07 000000487 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:18:23.010 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:18:23.010 -07 000000467 INF: FPGA: 'ZDACW 30267' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:18:23.020 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:23.020 -07 000000569 INF: FPGA: Recv ZDACR 30267
17-03-18 01:18:23.030 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:18:23.030 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:18:23.030 -07 000000467 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 01:18:23.210 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:18:23.210 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 01:18:23.300 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:18:23.300 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:18:23.300 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:23.300 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:23.300 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:18:23.300 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:18:23.300 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:23.300 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:23.300 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-18 01:18:23.310 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-18 01:18:23.400 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 01:18:23.400 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 01:18:23.450 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:23.450 -07 000000467 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:18:23.460 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:23.460 -07 000000487 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:23.460 -07 000000487 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:18:23.460 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.105 mm/sec
17-03-18 01:18:24.410 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:24.410 -07 000000561 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:18:24.420 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:24.420 -07 000000487 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:24.460 -07 000000487 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:18:24.460 -07 000000487 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:18:24.460 -07 000000487 INF: Y Motor: Moved to 61.5635 after 1469 ms (table move)
17-03-18 01:18:24.460 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138553 mm (DAC = 30267)
17-03-18 01:18:24.460 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:24.460 -07 000000474 INF: FPGA: Recv ZSGSRD 30867
17-03-18 01:18:24.470 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:18:24.470 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:24.470 -07 000000474 INF: FPGA: Recv ZSGSRD 30859
17-03-18 01:18:24.480 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:24.480 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:24.480 -07 000000618 INF: FPGA: Recv ZSGSRD 30865
17-03-18 01:18:24.490 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:24.490 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:24.490 -07 000000618 INF: FPGA: Recv ZSGSRD 30858
17-03-18 01:18:24.500 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:24.500 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:24.500 -07 000000618 INF: FPGA: Recv ZSGSRD 30853
17-03-18 01:18:24.510 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:24.510 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:24.510 -07 000000618 INF: FPGA: Recv ZSGSRD 30853
17-03-18 01:18:24.520 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:24.520 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:24.520 -07 000000618 INF: FPGA: Recv ZSGSRD 30854
17-03-18 01:18:24.530 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:24.530 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:24.530 -07 000000618 INF: FPGA: Recv ZSGSRD 30860
17-03-18 01:18:24.540 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:24.540 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:24.540 -07 000000618 INF: FPGA: Recv ZSGSRD 30858
17-03-18 01:18:24.550 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:24.550 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:24.550 -07 000000618 INF: FPGA: Recv ZSGSRD 30865
17-03-18 01:18:24.560 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:24.560 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:24.560 -07 000000618 INF: FPGA: Recv ZPIEZORD 26559
17-03-18 01:18:24.570 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:24.570 -07 000000501 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -9.4 V.
17-03-18 01:18:24.570 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30859 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30858 (-137.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30853 (-137.7 uncal um), Max = 30867 (-137.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:18:24.570 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30859, posNoise = 8, negNoise = 6
17-03-18 01:18:24.570 -07 000000501 INF: Z Motor: After move to -0.138553, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:24.570 -07 000000501 INF: Z Motor: Settle wait time = 1472 ms, measure time = 106 ms (allowed 150 ms), total time = 1578 ms
17-03-18 01:18:24.570 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 01:18:24.620 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-18 01:18:24.620 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:18:24.620 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:24.620 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:24.620 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:24.620 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:18:24.620 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:24.620 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:24.620 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:24.620 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:18:24.630 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:18:24.630 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:18:24.630 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:18:24.630 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:18:24.640 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:18:24.680 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:18:24.980 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:18:24.980 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:18:24.980 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:18:24.980 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 01:18:25.020 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:18:25.020 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:18:25.020 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 01:18:25.100 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:18:25.100 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:25.100 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:18:25.100 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 01:18:25.120 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:25.120 -07 000000625 INF: Autofocus start
17-03-18 01:18:25.120 -07 000000625 INF: MeasureProfile start
17-03-18 01:18:25.120 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:25.130 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:25.130 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:18:25.130 -07 000000625 INF: MeasureProfile done
17-03-18 01:18:25.130 -07 000000625 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:18:25.130 -07 000000625 INF: Autofocus finished
17-03-18 01:18:25.330 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:18:25.330 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:18:25.330 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.138568114493736. ----------
17-03-18 01:18:25.330 -07 000000610 INF: Cycle	85	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:18:25.340 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28791, sync = True, waitForSettling = True)
17-03-18 01:18:25.340 -07 000000610 INF: Z Motor: Moving to -0.131797 mm, started at -0.138568 mm, distance = 6.77 um
17-03-18 01:18:25.340 -07 000000610 INF: FPGA: Xmit ZDACW 28791\n [Z Motor]
17-03-18 01:18:25.340 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:18:25.350 -07 000000610 INF: FPGA: 'ZDACW 28791' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:18:25.350 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:25.350 -07 000000625 INF: FPGA: Recv ZDACR 28791
17-03-18 01:18:25.360 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:25.360 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:18:25.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:25.510 -07 000000501 INF: FPGA: Recv ZSGSRD 29809
17-03-18 01:18:25.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:25.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:25.520 -07 000000618 INF: FPGA: Recv ZSGSRD 29802
17-03-18 01:18:25.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:25.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:25.530 -07 000000467 INF: FPGA: Recv ZSGSRD 29801
17-03-18 01:18:25.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:25.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:25.540 -07 000000585 INF: FPGA: Recv ZSGSRD 29805
17-03-18 01:18:25.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:25.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:25.550 -07 000000467 INF: FPGA: Recv ZSGSRD 29806
17-03-18 01:18:25.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:25.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:25.560 -07 000000625 INF: FPGA: Recv ZSGSRD 29804
17-03-18 01:18:25.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:25.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:25.570 -07 000000585 INF: FPGA: Recv ZSGSRD 29811
17-03-18 01:18:25.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:25.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:25.580 -07 000000625 INF: FPGA: Recv ZSGSRD 29807
17-03-18 01:18:25.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:25.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:25.590 -07 000000585 INF: FPGA: Recv ZSGSRD 29805
17-03-18 01:18:25.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:25.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:25.600 -07 000000625 INF: FPGA: Recv ZSGSRD 29807
17-03-18 01:18:25.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:25.610 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:25.610 -07 000000585 INF: FPGA: Recv ZPIEZORD 25131
17-03-18 01:18:25.620 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:25.620 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -10.2 V.
17-03-18 01:18:25.620 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29806 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29806 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29801 (-131.0 uncal um), Max = 29811 (-131.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:18:25.620 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29806, posNoise = 5, negNoise = 5
17-03-18 01:18:25.620 -07 000000610 INF: Z Motor: After move to -0.131797, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:25.620 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:18:25.620 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:25.620 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:25.620 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:25.620 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:25.620 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:18:25.620 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:25.620 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:18:25.620 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:18:25.620 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:25.620 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:18:25.620 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:18:25.620 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:18:25.630 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:18:25.630 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:18:25.630 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:18:25.630 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:18:25.640 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:18:25.640 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:18:25.640 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:18:25.640 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:18:25.650 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28968 150\n [Camera]
17-03-18 01:18:25.850 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:18:26.240 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:18:26.240 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:18:26.240 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:26.240 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:18:26.240 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:18:26.240 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:26.240 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:26.240 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:18:26.240 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:26.240 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:18:26.430 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28968 775
17-03-18 01:18:26.580 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:18:26.640 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:18:26.640 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:18:26.640 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:26.640 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:18:26.640 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:18:26.640 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:26.640 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:18:26.640 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:18:26.640 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:18:26.650 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:18:26.770 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-18 01:18:26.770 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-18 01:18:26.770 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:26.770 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:18:26.770 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:18:26.770 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:26.770 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:18:26.770 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:26.770 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:26.770 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:18:26.960 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:18:26.960 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:18:26.960 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28968 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:18:26.960 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:18:26.960 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.131803419108462. ------
17-03-18 01:18:26.960 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:26.970 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13823 mm
17-03-18 01:18:26.970 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:18:26.970 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:26.970 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30197, sync = True, waitForSettling = False)
17-03-18 01:18:26.970 -07 000000501 INF: Z Motor: Moving to -0.138233 mm, started at -0.131803 mm, distance = -6.43 um
17-03-18 01:18:26.970 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:18:26.970 -07 000000585 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-18 01:18:26.980 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:26.980 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:26.980 -07 000000502 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:18:26.990 -07 000000501 INF: FPGA: Xmit ZDACW 30197\n [Z Motor]
17-03-18 01:18:26.990 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:18:26.990 -07 000000585 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:26.990 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:18:26.990 -07 000000585 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:18:26.990 -07 000000585 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:18:27.000 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:18:27.000 -07 000000501 INF: FPGA: 'ZDACW 30197' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:18:27.010 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:18:27.020 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:27.020 -07 000000461 INF: FPGA: Recv ZDACR 30197
17-03-18 01:18:27.030 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:18:27.030 -07 000000501 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 01:18:27.170 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:18:27.170 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:18:27.170 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:27.170 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:27.170 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:18:27.170 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:18:27.170 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:27.180 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:27.180 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:18:27.180 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:18:27.200 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:18:27.200 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:18:27.250 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:18:27.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:18:27.380 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 01:18:27.380 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 01:18:27.430 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:27.430 -07 000000569 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:18:27.440 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:27.440 -07 000000585 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:27.440 -07 000000585 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:18:27.440 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.135 mm/sec
17-03-18 01:18:27.930 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.000345,
17-03-18 01:18:28.390 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:28.390 -07 000000461 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:18:28.400 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:28.400 -07 000000585 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:28.420 -07 000000585 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:18:28.420 -07 000000585 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:18:28.420 -07 000000585 INF: Y Motor: Moved to 62.3955 after 1452 ms (table move)
17-03-18 01:18:28.420 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138233 mm (DAC = 30197)
17-03-18 01:18:28.420 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:28.430 -07 000000501 INF: FPGA: Recv ZSGSRD 30817
17-03-18 01:18:28.430 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:18:28.430 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:28.430 -07 000000487 INF: FPGA: Recv ZSGSRD 30811
17-03-18 01:18:28.440 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:18:28.440 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:28.440 -07 000000626 INF: FPGA: Recv ZSGSRD 30818
17-03-18 01:18:28.450 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:28.450 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:28.450 -07 000000626 INF: FPGA: Recv ZSGSRD 30814
17-03-18 01:18:28.460 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:28.460 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:28.460 -07 000000561 INF: FPGA: Recv ZSGSRD 30804
17-03-18 01:18:28.470 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:28.470 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:28.470 -07 000000474 INF: FPGA: Recv ZSGSRD 30811
17-03-18 01:18:28.480 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:28.480 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:28.480 -07 000000502 INF: FPGA: Recv ZSGSRD 30810
17-03-18 01:18:28.490 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:18:28.490 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:28.490 -07 000000487 INF: FPGA: Recv ZSGSRD 30803
17-03-18 01:18:28.500 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:28.500 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:28.500 -07 000000487 INF: FPGA: Recv ZSGSRD 30808
17-03-18 01:18:28.510 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:28.510 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:28.510 -07 000000474 INF: FPGA: Recv ZSGSRD 30810
17-03-18 01:18:28.520 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:28.520 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:28.520 -07 000000474 INF: FPGA: Recv ZPIEZORD 26509
17-03-18 01:18:28.530 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:28.530 -07 000000625 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.608 V. Piezo Error = -9.4 V.
17-03-18 01:18:28.530 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30811 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30810 (-137.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30803 (-137.4 uncal um), Max = 30818 (-137.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:18:28.530 -07 000000625 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30811, posNoise = 7, negNoise = 8
17-03-18 01:18:28.530 -07 000000625 INF: Z Motor: After move to -0.138233, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:28.530 -07 000000625 INF: Z Motor: Settle wait time = 1455 ms, measure time = 102 ms (allowed 150 ms), total time = 1557 ms
17-03-18 01:18:28.530 -07 000000625 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:18:28.580 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 01:18:28.580 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:18:28.580 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:28.580 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:28.580 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:28.580 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:28.580 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:18:28.580 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:28.580 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:28.580 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:18:28.590 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:18:28.590 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:18:28.600 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:18:28.600 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:18:28.600 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:18:28.640 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:18:28.940 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:18:28.940 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:18:28.940 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:18:28.950 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) start.
17-03-18 01:18:28.980 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:18:28.980 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:18:28.980 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:18:29.070 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 01:18:29.070 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:29.070 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:18:29.070 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 01:18:29.180 -07 000000618 INF: Autofocus start
17-03-18 01:18:29.180 -07 000000618 INF: MeasureProfile start
17-03-18 01:18:29.180 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:29.180 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:29.190 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:29.190 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:18:29.190 -07 000000618 INF: MeasureProfile done
17-03-18 01:18:29.190 -07 000000618 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 01:18:29.190 -07 000000618 INF: Autofocus finished
17-03-18 01:18:29.390 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:18:29.390 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:18:29.390 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138259752310932. ----------
17-03-18 01:18:29.390 -07 000000610 INF: Cycle	85	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:18:29.400 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28692, sync = True, waitForSettling = True)
17-03-18 01:18:29.400 -07 000000610 INF: Z Motor: Moving to -0.131344 mm, started at -0.138260 mm, distance = 6.92 um
17-03-18 01:18:29.400 -07 000000610 INF: FPGA: Xmit ZDACW 28692\n [Z Motor]
17-03-18 01:18:29.400 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:18:29.410 -07 000000610 INF: FPGA: 'ZDACW 28692' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:29.410 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:29.410 -07 000000461 INF: FPGA: Recv ZDACR 28692
17-03-18 01:18:29.420 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:29.420 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:18:29.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:29.570 -07 000000625 INF: FPGA: Recv ZSGSRD 29735
17-03-18 01:18:29.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:29.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:29.580 -07 000000461 INF: FPGA: Recv ZSGSRD 29740
17-03-18 01:18:29.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:29.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:29.590 -07 000000625 INF: FPGA: Recv ZSGSRD 29728
17-03-18 01:18:29.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:29.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:29.600 -07 000000561 INF: FPGA: Recv ZSGSRD 29737
17-03-18 01:18:29.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:29.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:29.610 -07 000000461 INF: FPGA: Recv ZSGSRD 29734
17-03-18 01:18:29.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:29.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:29.620 -07 000000474 INF: FPGA: Recv ZSGSRD 29740
17-03-18 01:18:29.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:29.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:29.630 -07 000000625 INF: FPGA: Recv ZSGSRD 29736
17-03-18 01:18:29.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:29.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:29.640 -07 000000561 INF: FPGA: Recv ZSGSRD 29726
17-03-18 01:18:29.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:29.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:29.650 -07 000000474 INF: FPGA: Recv ZSGSRD 29738
17-03-18 01:18:29.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:29.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:29.660 -07 000000625 INF: FPGA: Recv ZSGSRD 29736
17-03-18 01:18:29.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:29.670 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:29.670 -07 000000474 INF: FPGA: Recv ZPIEZORD 25121
17-03-18 01:18:29.680 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:29.680 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -10.1 V.
17-03-18 01:18:29.680 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29735 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29736 (-130.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29726 (-130.5 uncal um), Max = 29740 (-130.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:18:29.680 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29735, posNoise = 5, negNoise = 9
17-03-18 01:18:29.680 -07 000000610 INF: Z Motor: After move to -0.131344, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:29.680 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:18:29.680 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:29.680 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:29.680 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:29.680 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:29.680 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:18:29.680 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:29.680 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:18:29.680 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:18:29.680 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 01:18:29.680 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:18:29.680 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 01:18:29.680 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:18:29.690 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:18:29.690 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:18:29.690 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:18:29.690 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:18:29.700 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:18:29.700 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:18:29.700 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:18:29.700 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:18:29.700 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28868 150\n [Camera]
17-03-18 01:18:29.900 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:18:30.290 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:18:30.290 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:18:30.290 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:30.290 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:30.290 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:18:30.290 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:18:30.290 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:18:30.290 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:30.290 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:30.290 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:18:30.480 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28868 775
17-03-18 01:18:30.630 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:18:30.690 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:18:30.690 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:18:30.690 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:30.690 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:18:30.690 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:18:30.690 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:30.690 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:30.690 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:18:30.700 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:30.700 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:18:30.820 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:18:30.820 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:18:30.820 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:30.820 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:30.820 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:18:30.820 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:18:30.820 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:18:30.820 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:30.820 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:30.830 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:18:31.010 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:18:31.010 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:18:31.010 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28868 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-18 01:18:31.010 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:18:31.010 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131347300046397. ------
17-03-18 01:18:31.020 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:31.020 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13807 mm
17-03-18 01:18:31.020 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:18:31.020 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:18:31.020 -07 000000625 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 01:18:31.020 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 30161, sync = True, waitForSettling = False)
17-03-18 01:18:31.020 -07 000000467 INF: Z Motor: Moving to -0.138068 mm, started at -0.131347 mm, distance = -6.72 um
17-03-18 01:18:31.020 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:31.030 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:18:31.030 -07 000000467 INF: FPGA: Xmit ZDACW 30161\n [Z Motor]
17-03-18 01:18:31.030 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:18:31.040 -07 000000467 INF: FPGA: 'ZDACW 30161' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:18:31.040 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:31.040 -07 000000569 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:18:31.050 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:18:31.050 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:18:31.050 -07 000000625 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:31.050 -07 000000625 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:18:31.050 -07 000000625 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:18:31.060 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:31.060 -07 000000569 INF: FPGA: Recv ZDACR 30161
17-03-18 01:18:31.070 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:18:31.070 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:18:31.070 -07 000000467 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 01:18:31.220 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:18:31.220 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:18:31.220 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:31.230 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:18:31.230 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:18:31.230 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:31.230 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:31.230 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:18:31.230 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:18:31.240 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:18:31.250 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:18:31.250 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:18:31.440 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 01:18:31.440 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:18:31.490 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:31.490 -07 000000467 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:18:31.500 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:31.500 -07 000000625 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:31.500 -07 000000625 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 01:18:31.500 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-18 01:18:32.250 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:18:32.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:18:32.450 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:32.450 -07 000000569 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:18:32.460 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:32.460 -07 000000625 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:32.480 -07 000000625 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:18:32.480 -07 000000625 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:18:32.480 -07 000000625 INF: Y Motor: Moved to 63.2241 after 1462 ms (table move)
17-03-18 01:18:32.490 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138068 mm (DAC = 30161)
17-03-18 01:18:32.490 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:32.490 -07 000000569 INF: FPGA: Recv ZSGSRD 30780
17-03-18 01:18:32.500 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:32.500 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:32.500 -07 000000501 INF: FPGA: Recv ZSGSRD 30784
17-03-18 01:18:32.510 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:32.510 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:32.510 -07 000000625 INF: FPGA: Recv ZSGSRD 30784
17-03-18 01:18:32.520 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:32.520 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:32.520 -07 000000474 INF: FPGA: Recv ZSGSRD 30787
17-03-18 01:18:32.530 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:32.530 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:32.530 -07 000000561 INF: FPGA: Recv ZSGSRD 30788
17-03-18 01:18:32.540 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:32.540 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:32.540 -07 000000487 INF: FPGA: Recv ZSGSRD 30781
17-03-18 01:18:32.550 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:32.550 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:32.550 -07 000000474 INF: FPGA: Recv ZSGSRD 30776
17-03-18 01:18:32.560 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:32.560 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:32.560 -07 000000501 INF: FPGA: Recv ZSGSRD 30773
17-03-18 01:18:32.570 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:32.570 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:32.570 -07 000000474 INF: FPGA: Recv ZSGSRD 30782
17-03-18 01:18:32.580 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:32.580 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:32.580 -07 000000501 INF: FPGA: Recv ZSGSRD 30786
17-03-18 01:18:32.590 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:32.590 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:32.590 -07 000000502 INF: FPGA: Recv ZPIEZORD 26495
17-03-18 01:18:32.600 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:32.600 -07 000000618 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.602 V. Piezo Error = -9.4 V.
17-03-18 01:18:32.600 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30782 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30783 (-137.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30773 (-137.2 uncal um), Max = 30788 (-137.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:18:32.600 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30782, posNoise = 6, negNoise = 9
17-03-18 01:18:32.600 -07 000000618 INF: Z Motor: After move to -0.138068, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:32.600 -07 000000618 INF: Z Motor: Settle wait time = 1465 ms, measure time = 110 ms (allowed 150 ms), total time = 1575 ms
17-03-18 01:18:32.600 -07 000000618 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:18:32.640 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 01:18:32.640 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:18:32.640 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:32.640 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:32.640 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:32.640 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:32.640 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:18:32.640 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:32.640 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:32.640 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:18:32.650 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:18:32.650 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:18:32.650 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:18:32.650 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:18:32.660 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:18:32.700 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:18:33.000 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:18:33.000 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:18:33.000 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:18:33.000 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2625390808, 0x0, 559484976) start.
17-03-18 01:18:33.040 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:18:33.040 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 01:18:33.040 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:18:33.120 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2625390808, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:18:33.120 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:33.120 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:18:33.120 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:18:33.140 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:33.140 -07 000000479 INF: Autofocus start
17-03-18 01:18:33.140 -07 000000479 INF: MeasureProfile start
17-03-18 01:18:33.140 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:33.150 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:18:33.150 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:18:33.150 -07 000000479 INF: MeasureProfile done
17-03-18 01:18:33.150 -07 000000479 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:18:33.150 -07 000000479 INF: Autofocus finished
17-03-18 01:18:33.300 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.996267,
17-03-18 01:18:33.350 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:18:33.350 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:18:33.350 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138073450158821. ----------
17-03-18 01:18:33.360 -07 000000610 INF: Cycle	85	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:18:33.360 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28685, sync = True, waitForSettling = True)
17-03-18 01:18:33.360 -07 000000610 INF: Z Motor: Moving to -0.131312 mm, started at -0.138073 mm, distance = 6.76 um
17-03-18 01:18:33.360 -07 000000610 INF: FPGA: Xmit ZDACW 28685\n [Z Motor]
17-03-18 01:18:33.360 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:18:33.370 -07 000000610 INF: FPGA: 'ZDACW 28685' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:18:33.370 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:33.370 -07 000000569 INF: FPGA: Recv ZDACR 28685
17-03-18 01:18:33.380 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:33.380 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:18:33.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:33.530 -07 000000626 INF: FPGA: Recv ZSGSRD 29731
17-03-18 01:18:33.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:33.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:33.540 -07 000000501 INF: FPGA: Recv ZSGSRD 29731
17-03-18 01:18:33.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:33.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:33.550 -07 000000625 INF: FPGA: Recv ZSGSRD 29731
17-03-18 01:18:33.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:33.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:33.560 -07 000000474 INF: FPGA: Recv ZSGSRD 29728
17-03-18 01:18:33.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:33.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:33.570 -07 000000618 INF: FPGA: Recv ZSGSRD 29731
17-03-18 01:18:33.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:33.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:33.580 -07 000000585 INF: FPGA: Recv ZSGSRD 29729
17-03-18 01:18:33.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:33.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:33.590 -07 000000569 INF: FPGA: Recv ZSGSRD 29727
17-03-18 01:18:33.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:33.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:33.600 -07 000000487 INF: FPGA: Recv ZSGSRD 29730
17-03-18 01:18:33.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:33.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:33.610 -07 000000626 INF: FPGA: Recv ZSGSRD 29730
17-03-18 01:18:33.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:33.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:33.630 -07 000000585 INF: FPGA: Recv ZSGSRD 29737
17-03-18 01:18:33.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:18:33.640 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:33.640 -07 000000569 INF: FPGA: Recv ZPIEZORD 25115
17-03-18 01:18:33.650 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:33.650 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.377 V. Piezo Error = -10.1 V.
17-03-18 01:18:33.650 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29730 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29730 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29727 (-130.5 uncal um), Max = 29737 (-130.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:18:33.650 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29730, posNoise = 7, negNoise = 3
17-03-18 01:18:33.650 -07 000000610 INF: Z Motor: After move to -0.131312, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:33.650 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 01:18:33.650 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:33.650 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:33.650 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:33.650 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:33.650 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:18:33.650 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:33.650 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:18:33.650 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:18:33.650 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:33.650 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:18:33.650 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:18:33.650 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:18:33.660 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:18:33.660 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:18:33.660 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:18:33.660 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:18:33.670 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:18:33.670 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:18:33.670 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:18:33.670 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:18:33.690 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28862 150\n [Camera]
17-03-18 01:18:33.890 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:18:34.280 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:18:34.280 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:18:34.280 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:34.280 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:34.280 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:18:34.280 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:18:34.280 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:18:34.280 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:34.280 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:34.280 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:18:34.470 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28862 776
17-03-18 01:18:34.620 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:18:34.680 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:18:34.680 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:18:34.680 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:34.680 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:18:34.680 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:18:34.680 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:34.680 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:18:34.680 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:18:34.690 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:18:34.690 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:18:34.810 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:18:34.810 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:18:34.810 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:34.810 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:34.810 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:18:34.810 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:18:34.810 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:18:34.810 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:34.810 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:34.810 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 01:18:35.000 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:18:35.000 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:18:35.000 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28862 150' command took 4 ms to send, 1304 ms to get response, and 1326 ms overall
17-03-18 01:18:35.000 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:18:35.000 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131315178985688. ------
17-03-18 01:18:35.010 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:35.010 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13771 mm
17-03-18 01:18:35.010 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:18:35.010 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:35.010 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:18:35.010 -07 000000467 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 01:18:35.010 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30083, sync = True, waitForSettling = False)
17-03-18 01:18:35.010 -07 000000618 INF: Z Motor: Moving to -0.137711 mm, started at -0.131315 mm, distance = -6.40 um
17-03-18 01:18:35.020 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:18:35.020 -07 000000618 INF: FPGA: Xmit ZDACW 30083\n [Z Motor]
17-03-18 01:18:35.020 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:18:35.030 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:35.030 -07 000000618 INF: FPGA: 'ZDACW 30083' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:18:35.030 -07 000000561 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:18:35.040 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:18:35.040 -07 000000467 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:35.040 -07 000000467 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:18:35.040 -07 000000467 INF: Y Motor: Moving 1342 steps-17
17-03-18 01:18:35.040 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:18:35.050 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:35.050 -07 000000502 INF: FPGA: Recv ZDACR 30083
17-03-18 01:18:35.060 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:18:35.060 -07 000000618 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 01:18:35.060 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:18:35.200 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 01:18:35.200 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:18:35.200 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:35.200 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:18:35.200 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:18:35.200 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:35.200 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:35.210 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:18:35.210 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:18:35.210 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:18:35.240 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:18:35.240 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 01:18:35.440 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 01:18:35.440 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 01:18:35.480 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:35.480 -07 000000585 INF: FPGA: Recv YRDPOS 131188
17-03-18 01:18:35.490 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:18:35.490 -07 000000467 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:35.490 -07 000000467 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 01:18:35.490 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.096 mm/sec
17-03-18 01:18:36.440 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:36.440 -07 000000561 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:18:36.450 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:36.450 -07 000000467 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:36.470 -07 000000467 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:18:36.470 -07 000000467 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:18:36.470 -07 000000467 INF: Y Motor: Moved to 64.0571 after 1459 ms (table move)
17-03-18 01:18:36.470 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137711 mm (DAC = 30083)
17-03-18 01:18:36.470 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:36.480 -07 000000585 INF: FPGA: Recv ZSGSRD 30724
17-03-18 01:18:36.480 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:18:36.480 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:36.480 -07 000000424 INF: FPGA: Recv ZSGSRD 30730
17-03-18 01:18:36.490 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:36.490 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:36.490 -07 000000618 INF: FPGA: Recv ZSGSRD 30731
17-03-18 01:18:36.500 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:36.500 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:36.500 -07 000000585 INF: FPGA: Recv ZSGSRD 30730
17-03-18 01:18:36.510 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:36.510 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:36.510 -07 000000502 INF: FPGA: Recv ZSGSRD 30729
17-03-18 01:18:36.520 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:36.520 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:36.520 -07 000000461 INF: FPGA: Recv ZSGSRD 30723
17-03-18 01:18:36.530 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:36.530 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:36.530 -07 000000561 INF: FPGA: Recv ZSGSRD 30723
17-03-18 01:18:36.540 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:36.540 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:36.540 -07 000000618 INF: FPGA: Recv ZSGSRD 30721
17-03-18 01:18:36.550 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:36.550 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:36.550 -07 000000487 INF: FPGA: Recv ZSGSRD 30720
17-03-18 01:18:36.560 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:36.560 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:36.560 -07 000000618 INF: FPGA: Recv ZSGSRD 30731
17-03-18 01:18:36.570 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:36.570 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:36.570 -07 000000479 INF: FPGA: Recv ZPIEZORD 26417
17-03-18 01:18:36.580 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:36.580 -07 000000474 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -9.5 V.
17-03-18 01:18:36.580 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30726 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30726 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30720 (-136.9 uncal um), Max = 30731 (-136.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:18:36.580 -07 000000474 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30726, posNoise = 5, negNoise = 6
17-03-18 01:18:36.580 -07 000000474 INF: Z Motor: After move to -0.137711, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:36.580 -07 000000474 INF: Z Motor: Settle wait time = 1462 ms, measure time = 103 ms (allowed 150 ms), total time = 1565 ms
17-03-18 01:18:36.580 -07 000000474 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 01:18:36.630 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 01:18:36.630 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:18:36.630 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:36.630 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:36.630 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:36.630 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:36.630 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:18:36.630 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:36.640 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:36.640 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:18:36.640 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:18:36.640 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:18:36.650 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:18:36.650 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:18:36.650 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:18:36.700 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:18:37.000 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:18:37.000 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:18:37.000 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:18:37.000 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 01:18:37.040 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:18:37.040 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 01:18:37.040 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 01:18:37.130 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:18:37.130 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:37.130 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:18:37.130 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:18:37.140 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:37.140 -07 000000561 INF: Autofocus start
17-03-18 01:18:37.140 -07 000000561 INF: MeasureProfile start
17-03-18 01:18:37.140 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:37.150 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:37.150 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:18:37.150 -07 000000561 INF: MeasureProfile done
17-03-18 01:18:37.150 -07 000000561 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:18:37.150 -07 000000561 INF: Autofocus finished
17-03-18 01:18:37.250 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:18:37.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:18:37.350 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:18:37.350 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:18:37.350 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.137713694278882. ----------
17-03-18 01:18:37.350 -07 000000610 INF: Cycle	85	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:18:37.360 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28607, sync = True, waitForSettling = True)
17-03-18 01:18:37.360 -07 000000610 INF: Z Motor: Moving to -0.130954 mm, started at -0.137714 mm, distance = 6.76 um
17-03-18 01:18:37.360 -07 000000610 INF: FPGA: Xmit ZDACW 28607\n [Z Motor]
17-03-18 01:18:37.360 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:18:37.370 -07 000000610 INF: FPGA: 'ZDACW 28607' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:37.370 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:37.370 -07 000000424 INF: FPGA: Recv ZDACR 28607
17-03-18 01:18:37.380 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:37.380 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:18:37.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:37.530 -07 000000626 INF: FPGA: Recv ZSGSRD 29681
17-03-18 01:18:37.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:37.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:37.540 -07 000000479 INF: FPGA: Recv ZSGSRD 29676
17-03-18 01:18:37.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:37.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:37.550 -07 000000625 INF: FPGA: Recv ZSGSRD 29675
17-03-18 01:18:37.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:37.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:37.560 -07 000000424 INF: FPGA: Recv ZSGSRD 29672
17-03-18 01:18:37.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:37.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:37.570 -07 000000487 INF: FPGA: Recv ZSGSRD 29677
17-03-18 01:18:37.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:37.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:37.580 -07 000000461 INF: FPGA: Recv ZSGSRD 29680
17-03-18 01:18:37.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:37.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:37.590 -07 000000569 INF: FPGA: Recv ZSGSRD 29669
17-03-18 01:18:37.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:37.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:37.600 -07 000000618 INF: FPGA: Recv ZSGSRD 29677
17-03-18 01:18:37.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:37.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:37.610 -07 000000424 INF: FPGA: Recv ZSGSRD 29675
17-03-18 01:18:37.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:37.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:37.620 -07 000000461 INF: FPGA: Recv ZSGSRD 29677
17-03-18 01:18:37.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:37.630 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:37.630 -07 000000585 INF: FPGA: Recv ZPIEZORD 25062
17-03-18 01:18:37.640 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:37.640 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -10.1 V.
17-03-18 01:18:37.640 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29676 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29676 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29669 (-130.1 uncal um), Max = 29681 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:18:37.640 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29676, posNoise = 5, negNoise = 7
17-03-18 01:18:37.640 -07 000000610 INF: Z Motor: After move to -0.130954, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:37.640 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:18:37.640 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:37.640 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:37.640 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:37.640 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:37.640 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:18:37.640 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:37.640 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:18:37.640 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:18:37.640 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:18:37.640 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:18:37.640 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:18:37.640 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:18:37.640 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:18:37.640 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:18:37.640 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:18:37.640 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:18:37.650 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:18:37.650 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:18:37.650 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:18:37.650 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:18:37.660 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28784 150\n [Camera]
17-03-18 01:18:37.850 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:18:38.250 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:18:38.250 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:18:38.250 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:38.250 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:38.250 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:18:38.250 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:18:38.250 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:18:38.250 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:38.250 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:38.250 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 01:18:38.440 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28784 776
17-03-18 01:18:38.590 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:18:38.650 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:18:38.650 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:18:38.650 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:38.650 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:18:38.650 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:18:38.650 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:38.650 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:18:38.650 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:18:38.650 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:18:38.660 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:18:38.670 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.003063,
17-03-18 01:18:38.780 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:18:38.780 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:18:38.780 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:38.780 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:38.780 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 01:18:38.780 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:18:38.780 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:18:38.780 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:38.780 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:38.780 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 01:18:38.970 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 01:18:38.970 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:18:38.970 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28784 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-18 01:18:38.970 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:18:38.970 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.130968271530033. ------
17-03-18 01:18:38.980 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:38.980 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13730 mm
17-03-18 01:18:38.980 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:18:38.980 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:18:38.980 -07 000000479 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 01:18:38.980 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29993, sync = True, waitForSettling = False)
17-03-18 01:18:38.980 -07 000000625 INF: Z Motor: Moving to -0.137299 mm, started at -0.130968 mm, distance = -6.33 um
17-03-18 01:18:38.980 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:38.990 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:38.990 -07 000000625 INF: FPGA: Xmit ZDACW 29993\n [Z Motor]
17-03-18 01:18:38.990 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:18:39.000 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:39.000 -07 000000625 INF: FPGA: 'ZDACW 29993' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:18:39.000 -07 000000502 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:18:39.010 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:18:39.010 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:18:39.010 -07 000000479 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:39.010 -07 000000479 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:18:39.010 -07 000000479 INF: Y Motor: Moving 1337 steps-12
17-03-18 01:18:39.030 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:39.030 -07 000000467 INF: FPGA: Recv ZDACR 29993
17-03-18 01:18:39.040 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:18:39.040 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 01:18:39.040 -07 000000625 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 01:18:39.180 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:18:39.180 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:18:39.180 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:39.180 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:18:39.180 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:18:39.180 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:39.180 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:39.180 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:18:39.180 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:18:39.190 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:18:39.210 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:18:39.210 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:18:39.410 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 01:18:39.410 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 01:18:39.450 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:39.460 -07 000000569 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:18:39.460 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:18:39.460 -07 000000479 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:39.460 -07 000000479 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:18:39.460 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.835 mm, average velocity = 2.053 mm/sec
17-03-18 01:18:40.410 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:40.410 -07 000000487 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:18:40.420 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:40.420 -07 000000479 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:40.440 -07 000000479 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:18:40.440 -07 000000479 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:18:40.440 -07 000000479 INF: Y Motor: Moved to 64.8789 after 1460 ms (table move)
17-03-18 01:18:40.450 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137299 mm (DAC = 29993)
17-03-18 01:18:40.450 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:40.450 -07 000000487 INF: FPGA: Recv ZSGSRD 30665
17-03-18 01:18:40.460 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:40.460 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:40.460 -07 000000569 INF: FPGA: Recv ZSGSRD 30661
17-03-18 01:18:40.470 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:40.470 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:40.470 -07 000000561 INF: FPGA: Recv ZSGSRD 30667
17-03-18 01:18:40.480 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:40.480 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:40.480 -07 000000569 INF: FPGA: Recv ZSGSRD 30668
17-03-18 01:18:40.490 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:40.490 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:40.490 -07 000000461 INF: FPGA: Recv ZSGSRD 30662
17-03-18 01:18:40.500 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:40.500 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:40.500 -07 000000561 INF: FPGA: Recv ZSGSRD 30669
17-03-18 01:18:40.510 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:40.510 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:40.510 -07 000000569 INF: FPGA: Recv ZSGSRD 30667
17-03-18 01:18:40.520 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:40.520 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:40.520 -07 000000424 INF: FPGA: Recv ZSGSRD 30653
17-03-18 01:18:40.530 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:40.530 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:40.530 -07 000000561 INF: FPGA: Recv ZSGSRD 30662
17-03-18 01:18:40.540 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:40.540 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:40.540 -07 000000461 INF: FPGA: Recv ZSGSRD 30663
17-03-18 01:18:40.550 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:18:40.550 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:40.550 -07 000000618 INF: FPGA: Recv ZPIEZORD 26343
17-03-18 01:18:40.560 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:40.560 -07 000000474 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -9.5 V.
17-03-18 01:18:40.560 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30664 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30664 (-136.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30653 (-136.4 uncal um), Max = 30669 (-136.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 01:18:40.560 -07 000000474 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30664, posNoise = 5, negNoise = 11
17-03-18 01:18:40.560 -07 000000474 INF: Z Motor: After move to -0.137299, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:40.560 -07 000000474 INF: Z Motor: Settle wait time = 1463 ms, measure time = 110 ms (allowed 150 ms), total time = 1573 ms
17-03-18 01:18:40.560 -07 000000474 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:18:40.600 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 01:18:40.600 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:18:40.600 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:40.600 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:40.600 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:40.600 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:40.600 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:18:40.600 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:40.600 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:18:40.600 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:18:40.610 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:18:40.610 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:18:40.610 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:18:40.610 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:18:40.620 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:18:40.660 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:18:40.960 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:18:40.960 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:18:40.960 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:18:40.960 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 01:18:41.000 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:18:41.000 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 01:18:41.000 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:18:41.080 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 01:18:41.080 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:41.080 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:18:41.080 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:18:41.100 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:41.100 -07 000000424 INF: Autofocus start
17-03-18 01:18:41.100 -07 000000424 INF: MeasureProfile start
17-03-18 01:18:41.100 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:41.110 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:18:41.110 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:18:41.110 -07 000000424 INF: MeasureProfile done
17-03-18 01:18:41.110 -07 000000424 INF: X=80  Z correction [um]=0.3608828
17-03-18 01:18:41.110 -07 000000424 INF: Autofocus finished
17-03-18 01:18:41.310 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:18:41.310 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:18:41.310 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137315393126093. ----------
17-03-18 01:18:41.310 -07 000000610 INF: Cycle	85	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:18:41.320 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28585, sync = True, waitForSettling = True)
17-03-18 01:18:41.320 -07 000000610 INF: Z Motor: Moving to -0.130854 mm, started at -0.137315 mm, distance = 6.46 um
17-03-18 01:18:41.320 -07 000000610 INF: FPGA: Xmit ZDACW 28585\n [Z Motor]
17-03-18 01:18:41.320 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:18:41.330 -07 000000610 INF: FPGA: 'ZDACW 28585' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:41.330 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:41.330 -07 000000625 INF: FPGA: Recv ZDACR 28585
17-03-18 01:18:41.340 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:41.340 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:18:41.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:41.490 -07 000000479 INF: FPGA: Recv ZSGSRD 29664
17-03-18 01:18:41.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:41.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:41.500 -07 000000467 INF: FPGA: Recv ZSGSRD 29668
17-03-18 01:18:41.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:41.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:41.510 -07 000000618 INF: FPGA: Recv ZSGSRD 29650
17-03-18 01:18:41.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:41.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:41.520 -07 000000502 INF: FPGA: Recv ZSGSRD 29657
17-03-18 01:18:41.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:41.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:41.530 -07 000000585 INF: FPGA: Recv ZSGSRD 29659
17-03-18 01:18:41.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:41.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:41.540 -07 000000467 INF: FPGA: Recv ZSGSRD 29660
17-03-18 01:18:41.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:41.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:41.550 -07 000000487 INF: FPGA: Recv ZSGSRD 29662
17-03-18 01:18:41.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:41.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:41.560 -07 000000424 INF: FPGA: Recv ZSGSRD 29654
17-03-18 01:18:41.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:41.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:41.570 -07 000000569 INF: FPGA: Recv ZSGSRD 29659
17-03-18 01:18:41.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:41.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:41.580 -07 000000467 INF: FPGA: Recv ZSGSRD 29662
17-03-18 01:18:41.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:41.590 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:41.590 -07 000000487 INF: FPGA: Recv ZPIEZORD 25055
17-03-18 01:18:41.600 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:41.600 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -10.1 V.
17-03-18 01:18:41.600 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29660 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29660 (-130.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29650 (-130.0 uncal um), Max = 29668 (-130.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:18:41.600 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29660, posNoise = 8, negNoise = 10
17-03-18 01:18:41.600 -07 000000610 INF: Z Motor: After move to -0.130854, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:41.600 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:18:41.600 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:41.600 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:41.600 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:41.600 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:41.600 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:18:41.600 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:18:41.600 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:18:41.600 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:41.600 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:18:41.600 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:18:41.600 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:18:41.600 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:18:41.600 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:18:41.600 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:18:41.600 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:18:41.600 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:18:41.620 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:18:41.620 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:18:41.620 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:18:41.620 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:18:41.620 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28762 150\n [Camera]
17-03-18 01:18:41.820 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:18:42.210 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:18:42.210 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:18:42.210 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:42.210 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:42.210 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 01:18:42.220 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:18:42.220 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:18:42.220 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:42.220 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:42.220 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 01:18:42.250 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:18:42.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:18:42.410 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28762 775
17-03-18 01:18:42.550 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:18:42.610 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:18:42.610 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:18:42.610 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:42.610 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:42.610 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:18:42.610 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:18:42.610 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:18:42.610 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:42.620 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:42.620 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 01:18:42.740 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:18:42.740 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:18:42.740 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:42.880 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:18:42.880 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:18:42.880 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:42.880 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:42.880 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 01:18:42.880 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:42.880 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 01:18:42.940 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:18:42.940 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:18:42.940 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28762 150' command took 2 ms to send, 1302 ms to get response, and 1315 ms overall
17-03-18 01:18:42.940 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:18:42.940 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.130865484135765. ------
17-03-18 01:18:42.940 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:42.940 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13750 mm
17-03-18 01:18:42.940 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:18:42.950 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:18:42.950 -07 000000625 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 01:18:42.950 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:42.950 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:18:42.950 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:42.950 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30037, sync = True, waitForSettling = False)
17-03-18 01:18:42.950 -07 000000618 INF: Z Motor: Moving to -0.137501 mm, started at -0.130865 mm, distance = -6.64 um
17-03-18 01:18:42.950 -07 000000501 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:18:42.960 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:18:42.960 -07 000000625 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:42.960 -07 000000625 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:18:42.960 -07 000000625 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:18:42.960 -07 000000618 INF: FPGA: Xmit ZDACW 30037\n [Z Motor]
17-03-18 01:18:42.960 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 01:18:42.970 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:18:42.970 -07 000000618 INF: FPGA: 'ZDACW 30037' command took 3 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:18:42.980 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:18:42.990 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:42.990 -07 000000585 INF: FPGA: Recv ZDACR 30037
17-03-18 01:18:43.000 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:18:43.000 -07 000000618 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 01:18:43.170 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:18:43.170 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 222 ms overall
17-03-18 01:18:43.280 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:18:43.280 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:18:43.280 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:43.280 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:18:43.280 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:18:43.280 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:43.280 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:43.280 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:43.290 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 540 ms.
17-03-18 01:18:43.290 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:18:43.350 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 01:18:43.350 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:18:43.400 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:43.400 -07 000000501 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:18:43.410 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:43.410 -07 000000625 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:43.410 -07 000000625 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:18:43.410 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 01:18:44.040 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.012614,
17-03-18 01:18:44.360 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:44.360 -07 000000502 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:18:44.370 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:44.370 -07 000000625 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:44.400 -07 000000625 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:18:44.400 -07 000000625 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:18:44.400 -07 000000625 INF: Y Motor: Moved to 65.7139 after 1448 ms (table move)
17-03-18 01:18:44.400 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137501 mm (DAC = 30037)
17-03-18 01:18:44.410 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:44.410 -07 000000474 INF: FPGA: Recv ZSGSRD 30694
17-03-18 01:18:44.420 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:18:44.430 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:44.430 -07 000000501 INF: FPGA: Recv ZSGSRD 30692
17-03-18 01:18:44.440 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:18:44.460 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:44.460 -07 000000561 INF: FPGA: Recv ZSGSRD 30694
17-03-18 01:18:44.470 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:18:44.470 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:44.470 -07 000000569 INF: FPGA: Recv ZSGSRD 30691
17-03-18 01:18:44.480 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:44.490 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:44.490 -07 000000479 INF: FPGA: Recv ZSGSRD 30701
17-03-18 01:18:44.500 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:18:44.500 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:44.500 -07 000000474 INF: FPGA: Recv ZSGSRD 30696
17-03-18 01:18:44.510 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:44.510 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:44.510 -07 000000569 INF: FPGA: Recv ZSGSRD 30694
17-03-18 01:18:44.520 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:44.520 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:44.520 -07 000000479 INF: FPGA: Recv ZSGSRD 30701
17-03-18 01:18:44.530 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:44.530 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:44.530 -07 000000474 INF: FPGA: Recv ZSGSRD 30693
17-03-18 01:18:44.540 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:44.540 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:44.540 -07 000000569 INF: FPGA: Recv ZSGSRD 30698
17-03-18 01:18:44.550 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:44.550 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:44.550 -07 000000585 INF: FPGA: Recv ZPIEZORD 26452
17-03-18 01:18:44.560 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:44.560 -07 000000461 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.583 V. Piezo Error = -9.3 V.
17-03-18 01:18:44.560 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30695 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30694 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30691 (-136.7 uncal um), Max = 30701 (-136.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:18:44.560 -07 000000461 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30695, posNoise = 6, negNoise = 4
17-03-18 01:18:44.560 -07 000000461 INF: Z Motor: After move to -0.137501, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:44.560 -07 000000461 INF: Z Motor: Settle wait time = 1451 ms, measure time = 157 ms (allowed 150 ms), total time = 1608 ms
17-03-18 01:18:44.560 -07 000000461 INF: Z Motor: Warning: Actual position measuring time = 157 ms, longer than max expected time of 150 ms
17-03-18 01:18:44.560 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 01:18:44.560 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:18:44.560 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:44.560 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:44.560 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:44.560 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:44.560 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:18:44.560 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:44.560 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:18:44.560 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:18:44.570 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:18:44.570 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:18:44.570 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:18:44.570 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:18:44.580 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:18:44.630 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:18:44.920 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:18:44.920 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:18:44.930 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:18:44.930 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 01:18:44.960 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:18:44.960 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 01:18:44.960 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:18:45.040 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:18:45.040 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:45.040 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:18:45.040 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:18:45.060 -07 000000561 INF: Autofocus start
17-03-18 01:18:45.060 -07 000000561 INF: MeasureProfile start
17-03-18 01:18:45.060 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:45.060 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:45.070 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:45.070 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:18:45.070 -07 000000561 INF: MeasureProfile done
17-03-18 01:18:45.070 -07 000000561 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 01:18:45.070 -07 000000561 INF: Autofocus finished
17-03-18 01:18:45.270 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:18:45.270 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 01:18:45.270 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.137514543702488. ----------
17-03-18 01:18:45.280 -07 000000610 INF: Cycle	85	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:18:45.280 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28515, sync = True, waitForSettling = True)
17-03-18 01:18:45.280 -07 000000610 INF: Z Motor: Moving to -0.130533 mm, started at -0.137515 mm, distance = 6.98 um
17-03-18 01:18:45.280 -07 000000610 INF: FPGA: Xmit ZDACW 28515\n [Z Motor]
17-03-18 01:18:45.280 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:18:45.290 -07 000000610 INF: FPGA: 'ZDACW 28515' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:18:45.290 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:45.290 -07 000000618 INF: FPGA: Recv ZDACR 28515
17-03-18 01:18:45.300 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:45.300 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:18:45.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:45.450 -07 000000501 INF: FPGA: Recv ZSGSRD 29610
17-03-18 01:18:45.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:45.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:45.460 -07 000000625 INF: FPGA: Recv ZSGSRD 29611
17-03-18 01:18:45.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:45.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:45.470 -07 000000585 INF: FPGA: Recv ZSGSRD 29604
17-03-18 01:18:45.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:45.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:45.480 -07 000000618 INF: FPGA: Recv ZSGSRD 29608
17-03-18 01:18:45.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:45.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:45.490 -07 000000424 INF: FPGA: Recv ZSGSRD 29614
17-03-18 01:18:45.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:45.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:45.500 -07 000000618 INF: FPGA: Recv ZSGSRD 29611
17-03-18 01:18:45.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:45.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:45.510 -07 000000625 INF: FPGA: Recv ZSGSRD 29607
17-03-18 01:18:45.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:45.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:45.520 -07 000000461 INF: FPGA: Recv ZSGSRD 29608
17-03-18 01:18:45.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:45.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:45.530 -07 000000424 INF: FPGA: Recv ZSGSRD 29613
17-03-18 01:18:45.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:45.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:45.540 -07 000000618 INF: FPGA: Recv ZSGSRD 29602
17-03-18 01:18:45.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:45.550 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:45.550 -07 000000625 INF: FPGA: Recv ZPIEZORD 25002
17-03-18 01:18:45.560 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:45.560 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -10.1 V.
17-03-18 01:18:45.560 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29609 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29609 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29602 (-129.7 uncal um), Max = 29614 (-129.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:18:45.560 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29609, posNoise = 5, negNoise = 7
17-03-18 01:18:45.560 -07 000000610 INF: Z Motor: After move to -0.130533, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:45.560 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:18:45.560 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:45.560 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:45.560 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:45.560 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:45.560 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:18:45.560 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:18:45.560 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:18:45.560 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:45.560 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:18:45.560 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:18:45.560 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:45.560 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:18:45.570 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:18:45.570 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:18:45.570 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:18:45.570 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:18:45.580 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:18:45.580 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:18:45.580 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:18:45.580 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:18:45.590 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28692 150\n [Camera]
17-03-18 01:18:45.780 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:18:46.180 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:18:46.180 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:18:46.180 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:46.180 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:18:46.180 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:18:46.180 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:46.180 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:46.180 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-18 01:18:46.180 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:46.180 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:18:46.370 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28692 775
17-03-18 01:18:46.520 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:18:46.580 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:18:46.580 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:18:46.580 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:46.580 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:18:46.580 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:18:46.580 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:46.580 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:46.580 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:18:46.580 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:46.590 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:18:46.710 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:18:46.710 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:18:46.710 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:46.820 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:18:46.820 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:18:46.820 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:46.830 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:46.830 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:18:46.830 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:46.830 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) start.
17-03-18 01:18:46.900 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:18:46.900 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:18:46.900 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28692 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:18:46.900 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:18:46.900 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.130537849316535. ------
17-03-18 01:18:46.900 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:46.900 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13681 mm
17-03-18 01:18:46.900 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:18:46.910 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:18:46.910 -07 000000467 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-18 01:18:46.910 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:46.910 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29886, sync = True, waitForSettling = False)
17-03-18 01:18:46.910 -07 000000501 INF: Z Motor: Moving to -0.136809 mm, started at -0.130538 mm, distance = -6.27 um
17-03-18 01:18:46.910 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:46.910 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:18:46.910 -07 000000585 INF: FPGA: Recv YRDPOS 134583
17-03-18 01:18:46.920 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:18:46.920 -07 000000501 INF: FPGA: Xmit ZDACW 29886\n [Z Motor]
17-03-18 01:18:46.920 -07 000000467 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:46.920 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 01:18:46.920 -07 000000467 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:18:46.920 -07 000000467 INF: Y Motor: Moving 1341 steps-18
17-03-18 01:18:46.930 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:18:46.930 -07 000000501 INF: FPGA: 'ZDACW 29886' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:18:46.940 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:18:46.950 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:46.950 -07 000000625 INF: FPGA: Recv ZDACR 29886
17-03-18 01:18:46.960 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:18:46.960 -07 000000501 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 01:18:47.130 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:18:47.130 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 01:18:47.210 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 01:18:47.210 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 01:18:47.210 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:47.210 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:47.220 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 01:18:47.220 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:18:47.220 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:47.220 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:18:47.220 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:47.220 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 01:18:47.250 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:18:47.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:18:47.310 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 01:18:47.310 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 01:18:47.360 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:47.360 -07 000000569 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:18:47.370 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:47.370 -07 000000467 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:47.370 -07 000000467 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:18:47.370 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.140 mm/sec
17-03-18 01:18:48.320 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:48.320 -07 000000585 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:18:48.330 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:48.330 -07 000000467 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:48.350 -07 000000467 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:18:48.350 -07 000000467 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:18:48.350 -07 000000467 INF: Y Motor: Moved to 66.5391 after 1447 ms (table move)
17-03-18 01:18:48.360 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136809 mm (DAC = 29886)
17-03-18 01:18:48.360 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:48.360 -07 000000585 INF: FPGA: Recv ZSGSRD 30586
17-03-18 01:18:48.370 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:18:48.370 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:48.370 -07 000000474 INF: FPGA: Recv ZSGSRD 30587
17-03-18 01:18:48.380 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:48.380 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:48.380 -07 000000480 INF: FPGA: Recv ZSGSRD 30585
17-03-18 01:18:48.390 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:48.390 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:48.390 -07 000000606 INF: FPGA: Recv ZSGSRD 30593
17-03-18 01:18:48.400 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:48.400 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:48.400 -07 000000585 INF: FPGA: Recv ZSGSRD 30582
17-03-18 01:18:48.410 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:48.410 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:48.410 -07 000000474 INF: FPGA: Recv ZSGSRD 30583
17-03-18 01:18:48.420 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:48.420 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:48.420 -07 000000479 INF: FPGA: Recv ZSGSRD 30590
17-03-18 01:18:48.430 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:48.430 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:48.430 -07 000000606 INF: FPGA: Recv ZSGSRD 30581
17-03-18 01:18:48.440 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:48.440 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:48.440 -07 000000585 INF: FPGA: Recv ZSGSRD 30578
17-03-18 01:18:48.450 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:48.450 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:48.450 -07 000000487 INF: FPGA: Recv ZSGSRD 30587
17-03-18 01:18:48.460 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:48.460 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:48.460 -07 000000479 INF: FPGA: Recv ZPIEZORD 26273
17-03-18 01:18:48.470 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:48.470 -07 000000502 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -9.5 V.
17-03-18 01:18:48.470 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30585 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30586 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30578 (-136.0 uncal um), Max = 30593 (-136.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:18:48.470 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30585, posNoise = 8, negNoise = 7
17-03-18 01:18:48.470 -07 000000502 INF: Z Motor: After move to -0.136809, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:48.470 -07 000000502 INF: Z Motor: Settle wait time = 1449 ms, measure time = 110 ms (allowed 150 ms), total time = 1559 ms
17-03-18 01:18:48.470 -07 000000502 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:18:48.510 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 01:18:48.510 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:18:48.510 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:48.510 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:48.510 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:48.510 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:48.510 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:18:48.510 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:48.510 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:48.510 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:18:48.520 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:18:48.520 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:18:48.530 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:18:48.530 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:18:48.530 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:18:48.570 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:18:48.870 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:18:48.870 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:18:48.870 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:18:48.880 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2617114384, 0x0, 559484976) start.
17-03-18 01:18:48.910 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:18:48.910 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 01:18:48.910 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:18:48.990 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2617114384, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:18:48.990 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:48.990 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:18:48.990 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:18:49.010 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:49.010 -07 000000585 INF: Autofocus start
17-03-18 01:18:49.010 -07 000000585 INF: MeasureProfile start
17-03-18 01:18:49.010 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:49.020 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:49.020 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:18:49.020 -07 000000585 INF: MeasureProfile done
17-03-18 01:18:49.020 -07 000000585 INF: X=32  Z correction [um]=0.1299841
17-03-18 01:18:49.020 -07 000000585 INF: Autofocus finished
17-03-18 01:18:49.220 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:18:49.220 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:18:49.220 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.136807880366894. ----------
17-03-18 01:18:49.220 -07 000000610 INF: Cycle	85	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:18:49.230 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28427, sync = True, waitForSettling = True)
17-03-18 01:18:49.230 -07 000000610 INF: Z Motor: Moving to -0.130130 mm, started at -0.136808 mm, distance = 6.68 um
17-03-18 01:18:49.230 -07 000000610 INF: FPGA: Xmit ZDACW 28427\n [Z Motor]
17-03-18 01:18:49.230 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 01:18:49.240 -07 000000610 INF: FPGA: 'ZDACW 28427' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:49.240 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:49.240 -07 000000424 INF: FPGA: Recv ZDACR 28427
17-03-18 01:18:49.250 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:49.250 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:18:49.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:49.400 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.990831,
17-03-18 01:18:49.400 -07 000000467 INF: FPGA: Recv ZSGSRD 29546
17-03-18 01:18:49.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:49.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:49.420 -07 000000474 INF: FPGA: Recv ZSGSRD 29545
17-03-18 01:18:49.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:18:49.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:49.440 -07 000000618 INF: FPGA: Recv ZSGSRD 29549
17-03-18 01:18:49.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:18:49.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:49.470 -07 000000474 INF: FPGA: Recv ZSGSRD 29543
17-03-18 01:18:49.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:18:49.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:49.480 -07 000000501 INF: FPGA: Recv ZSGSRD 29544
17-03-18 01:18:49.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:49.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:49.500 -07 000000467 INF: FPGA: Recv ZSGSRD 29549
17-03-18 01:18:49.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:18:49.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:49.510 -07 000000487 INF: FPGA: Recv ZSGSRD 29545
17-03-18 01:18:49.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:49.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:49.520 -07 000000625 INF: FPGA: Recv ZSGSRD 29547
17-03-18 01:18:49.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:49.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:49.530 -07 000000618 INF: FPGA: Recv ZSGSRD 29553
17-03-18 01:18:49.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:49.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:49.540 -07 000000424 INF: FPGA: Recv ZSGSRD 29541
17-03-18 01:18:49.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:49.550 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:49.550 -07 000000501 INF: FPGA: Recv ZPIEZORD 24940
17-03-18 01:18:49.560 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:49.560 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.338 V. Piezo Error = -10.1 V.
17-03-18 01:18:49.560 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29546 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29546 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29541 (-129.3 uncal um), Max = 29553 (-129.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:18:49.560 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29546, posNoise = 7, negNoise = 5
17-03-18 01:18:49.560 -07 000000610 INF: Z Motor: After move to -0.130130, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:49.560 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-18 01:18:49.560 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:49.560 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:49.560 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:49.560 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:49.560 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:18:49.560 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:49.560 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:18:49.560 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:18:49.560 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:18:49.560 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:18:49.560 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:49.560 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:18:49.560 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:18:49.570 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:18:49.570 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:18:49.570 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:18:49.570 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:18:49.570 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:18:49.570 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:18:49.580 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:18:49.580 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28604 150\n [Camera]
17-03-18 01:18:49.780 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:18:50.170 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:18:50.170 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:18:50.170 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:50.170 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:50.170 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:18:50.170 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:18:50.170 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:18:50.170 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:50.180 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:50.180 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:18:50.360 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28604 775
17-03-18 01:18:50.510 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:18:50.570 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:18:50.570 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:18:50.570 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:50.570 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:50.570 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:18:50.570 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:18:50.570 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:18:50.570 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:50.580 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:50.590 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:18:50.700 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:18:50.700 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:18:50.700 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:50.810 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:18:50.810 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:18:50.810 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:50.820 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:50.820 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:18:50.820 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:50.820 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:18:50.890 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:18:50.890 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:18:50.890 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28604 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-18 01:18:50.890 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:18:50.890 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130133123951604. ------
17-03-18 01:18:50.900 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:50.900 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13692 mm
17-03-18 01:18:50.900 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:18:50.900 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:18:50.900 -07 000000502 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 01:18:50.900 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:50.900 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29910, sync = True, waitForSettling = False)
17-03-18 01:18:50.900 -07 000000618 INF: Z Motor: Moving to -0.136919 mm, started at -0.130133 mm, distance = -6.79 um
17-03-18 01:18:50.910 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:50.910 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:18:50.910 -07 000000479 INF: FPGA: Recv YRDPOS 136273
17-03-18 01:18:50.920 -07 000000618 INF: FPGA: Xmit ZDACW 29910\n [Z Motor]
17-03-18 01:18:50.920 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:18:50.920 -07 000000502 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:50.920 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:18:50.920 -07 000000502 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:18:50.920 -07 000000502 INF: Y Motor: Moving 1349 steps-28
17-03-18 01:18:50.930 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:18:50.930 -07 000000618 INF: FPGA: 'ZDACW 29910' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:18:50.940 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:18:50.950 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:50.950 -07 000000611 INF: FPGA: Recv ZDACR 29910
17-03-18 01:18:50.960 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:18:50.960 -07 000000618 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 01:18:51.130 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:18:51.130 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:18:51.200 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:18:51.200 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:18:51.200 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:51.210 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:51.210 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:18:51.210 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:18:51.210 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:51.210 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:51.210 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-18 01:18:51.210 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:18:51.320 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 01:18:51.320 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 393 ms overall
17-03-18 01:18:51.360 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:51.360 -07 000000461 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:18:51.370 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:18:51.370 -07 000000502 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:51.370 -07 000000502 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 01:18:51.370 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-18 01:18:52.250 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:18:52.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:18:52.320 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:52.320 -07 000000501 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:18:52.330 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:52.330 -07 000000502 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:52.350 -07 000000502 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:18:52.350 -07 000000502 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:18:52.350 -07 000000502 INF: Y Motor: Moved to 67.3721 after 1451 ms (table move)
17-03-18 01:18:52.360 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136919 mm (DAC = 29910)
17-03-18 01:18:52.360 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:52.360 -07 000000487 INF: FPGA: Recv ZSGSRD 30608
17-03-18 01:18:52.370 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:52.370 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:52.370 -07 000000626 INF: FPGA: Recv ZSGSRD 30604
17-03-18 01:18:52.380 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:52.380 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:52.380 -07 000000461 INF: FPGA: Recv ZSGSRD 30607
17-03-18 01:18:52.390 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:52.390 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:52.390 -07 000000480 INF: FPGA: Recv ZSGSRD 30600
17-03-18 01:18:52.400 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:52.400 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:52.400 -07 000000502 INF: FPGA: Recv ZSGSRD 30605
17-03-18 01:18:52.410 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:52.410 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:52.410 -07 000000625 INF: FPGA: Recv ZSGSRD 30604
17-03-18 01:18:52.420 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:52.420 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:52.420 -07 000000461 INF: FPGA: Recv ZSGSRD 30602
17-03-18 01:18:52.430 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:52.430 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:52.430 -07 000000606 INF: FPGA: Recv ZSGSRD 30604
17-03-18 01:18:52.440 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:52.440 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:52.440 -07 000000502 INF: FPGA: Recv ZSGSRD 30595
17-03-18 01:18:52.450 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:52.450 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:52.450 -07 000000424 INF: FPGA: Recv ZSGSRD 30601
17-03-18 01:18:52.460 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:52.460 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:52.460 -07 000000461 INF: FPGA: Recv ZPIEZORD 26356
17-03-18 01:18:52.470 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:52.470 -07 000000585 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.564 V. Piezo Error = -9.3 V.
17-03-18 01:18:52.470 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30603 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30604 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30595 (-136.1 uncal um), Max = 30608 (-136.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:18:52.470 -07 000000585 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30603, posNoise = 5, negNoise = 8
17-03-18 01:18:52.470 -07 000000585 INF: Z Motor: After move to -0.136919, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:52.470 -07 000000585 INF: Z Motor: Settle wait time = 1453 ms, measure time = 111 ms (allowed 150 ms), total time = 1564 ms
17-03-18 01:18:52.470 -07 000000585 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:18:52.510 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 01:18:52.510 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:18:52.510 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:52.510 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:52.510 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:52.510 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:52.510 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:18:52.510 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:52.510 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:18:52.510 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:18:52.520 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:18:52.520 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:18:52.520 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:18:52.520 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:18:52.530 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:18:52.570 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 01:18:52.870 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 01:18:52.870 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 01:18:52.880 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:18:52.880 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:18:52.910 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:18:52.910 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 01:18:52.910 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 01:18:52.990 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:18:52.990 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:52.990 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:18:52.990 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:18:53.010 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:53.010 -07 000000461 INF: Autofocus start
17-03-18 01:18:53.010 -07 000000461 INF: MeasureProfile start
17-03-18 01:18:53.010 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:53.020 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:53.020 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:18:53.020 -07 000000461 INF: MeasureProfile done
17-03-18 01:18:53.020 -07 000000461 INF: X=28  Z correction [um]=0.1107426
17-03-18 01:18:53.020 -07 000000461 INF: Autofocus finished
17-03-18 01:18:53.220 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:18:53.220 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:18:53.220 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.136923516185446. ----------
17-03-18 01:18:53.230 -07 000000610 INF: Cycle	85	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:18:53.230 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28447, sync = True, waitForSettling = True)
17-03-18 01:18:53.230 -07 000000610 INF: Z Motor: Moving to -0.130222 mm, started at -0.136924 mm, distance = 6.70 um
17-03-18 01:18:53.230 -07 000000610 INF: FPGA: Xmit ZDACW 28447\n [Z Motor]
17-03-18 01:18:53.230 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 01:18:53.240 -07 000000610 INF: FPGA: 'ZDACW 28447' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:18:53.240 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:53.240 -07 000000618 INF: FPGA: Recv ZDACR 28447
17-03-18 01:18:53.250 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:53.250 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:18:53.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:53.400 -07 000000501 INF: FPGA: Recv ZSGSRD 29565
17-03-18 01:18:53.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:53.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:53.410 -07 000000467 INF: FPGA: Recv ZSGSRD 29563
17-03-18 01:18:53.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:53.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:53.420 -07 000000626 INF: FPGA: Recv ZSGSRD 29563
17-03-18 01:18:53.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:53.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:53.430 -07 000000502 INF: FPGA: Recv ZSGSRD 29562
17-03-18 01:18:53.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:53.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:53.440 -07 000000501 INF: FPGA: Recv ZSGSRD 29560
17-03-18 01:18:53.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:53.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:53.450 -07 000000585 INF: FPGA: Recv ZSGSRD 29560
17-03-18 01:18:53.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:53.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:53.460 -07 000000626 INF: FPGA: Recv ZSGSRD 29562
17-03-18 01:18:53.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:53.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:53.470 -07 000000424 INF: FPGA: Recv ZSGSRD 29562
17-03-18 01:18:53.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:53.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:53.480 -07 000000502 INF: FPGA: Recv ZSGSRD 29562
17-03-18 01:18:53.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:53.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:53.490 -07 000000611 INF: FPGA: Recv ZSGSRD 29559
17-03-18 01:18:53.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:53.500 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:53.500 -07 000000479 INF: FPGA: Recv ZPIEZORD 24977
17-03-18 01:18:53.510 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:53.510 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -10.0 V.
17-03-18 01:18:53.510 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29562 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29562 (-129.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29559 (-129.4 uncal um), Max = 29565 (-129.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:18:53.510 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29562, posNoise = 3, negNoise = 3
17-03-18 01:18:53.510 -07 000000610 INF: Z Motor: After move to -0.130222, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:53.510 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:18:53.510 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:53.510 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:53.510 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:18:53.510 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:53.510 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:53.510 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:53.510 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:53.510 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:18:53.510 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:18:53.510 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:18:53.520 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:18:53.520 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:18:53.520 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:18:53.520 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:18:53.520 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:18:53.520 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:18:53.530 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:18:53.530 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:18:53.530 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:18:53.530 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:18:53.530 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28624 150\n [Camera]
17-03-18 01:18:53.740 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:18:54.130 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:18:54.130 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:18:54.130 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:54.130 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:18:54.130 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:18:54.130 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:54.130 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:54.130 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:18:54.130 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:54.130 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:18:54.320 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28624 775
17-03-18 01:18:54.470 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:18:54.510 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 01:18:54.510 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 01:18:54.510 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:54.510 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:54.510 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 01:18:54.510 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 01:18:54.510 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:54.520 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:54.520 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:18:54.520 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:18:54.660 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:18:54.660 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:18:54.660 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:54.760 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:18:54.760 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:18:54.760 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:54.770 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:54.770 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:18:54.770 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:54.770 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:18:54.790 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.008536,
17-03-18 01:18:54.850 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:18:54.850 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:18:54.850 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28624 150' command took 2 ms to send, 1304 ms to get response, and 1317 ms overall
17-03-18 01:18:54.850 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:18:54.850 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130235911345872. ------
17-03-18 01:18:54.850 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13664 mm
17-03-18 01:18:54.860 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:18:54.860 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:54.860 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29849, sync = True, waitForSettling = False)
17-03-18 01:18:54.860 -07 000000606 INF: Z Motor: Moving to -0.136640 mm, started at -0.130236 mm, distance = -6.40 um
17-03-18 01:18:54.860 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:18:54.860 -07 000000461 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 01:18:54.860 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:54.870 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:54.870 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:54.870 -07 000000585 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:18:54.880 -07 000000606 INF: FPGA: Xmit ZDACW 29849\n [Z Motor]
17-03-18 01:18:54.880 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:18:54.880 -07 000000461 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:54.880 -07 000000461 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:18:54.880 -07 000000461 INF: Y Motor: Moving 1345 steps-22
17-03-18 01:18:54.880 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:18:54.890 -07 000000606 INF: FPGA: 'ZDACW 29849' command took 3 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:18:54.890 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:18:54.900 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:18:54.910 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:54.910 -07 000000467 INF: FPGA: Recv ZDACR 29849
17-03-18 01:18:54.920 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:18:54.920 -07 000000606 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-18 01:18:55.090 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:18:55.090 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:18:55.170 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:18:55.170 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:18:55.170 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:55.170 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:18:55.170 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:18:55.170 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:55.170 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:18:55.170 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:18:55.170 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-18 01:18:55.180 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:18:55.270 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 01:18:55.270 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 395 ms overall
17-03-18 01:18:55.320 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:55.320 -07 000000467 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:18:55.330 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:18:55.330 -07 000000461 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:55.330 -07 000000461 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:18:55.330 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.841 mm, average velocity = 2.128 mm/sec
17-03-18 01:18:56.280 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:56.280 -07 000000479 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:18:56.290 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:56.290 -07 000000461 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:56.310 -07 000000461 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:18:56.310 -07 000000461 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:18:56.310 -07 000000461 INF: Y Motor: Moved to 68.2051 after 1451 ms (table move)
17-03-18 01:18:56.310 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136640 mm (DAC = 29849)
17-03-18 01:18:56.310 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:56.320 -07 000000474 INF: FPGA: Recv ZSGSRD 30566
17-03-18 01:18:56.320 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:18:56.320 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:56.320 -07 000000501 INF: FPGA: Recv ZSGSRD 30564
17-03-18 01:18:56.330 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:18:56.330 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:56.330 -07 000000585 INF: FPGA: Recv ZSGSRD 30564
17-03-18 01:18:56.340 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:56.340 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:56.340 -07 000000487 INF: FPGA: Recv ZSGSRD 30555
17-03-18 01:18:56.350 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:56.350 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:56.350 -07 000000474 INF: FPGA: Recv ZSGSRD 30562
17-03-18 01:18:56.360 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:56.360 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:56.360 -07 000000501 INF: FPGA: Recv ZSGSRD 30566
17-03-18 01:18:56.370 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:56.370 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:56.370 -07 000000585 INF: FPGA: Recv ZSGSRD 30553
17-03-18 01:18:56.380 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:56.380 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:56.380 -07 000000467 INF: FPGA: Recv ZSGSRD 30554
17-03-18 01:18:56.390 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:56.390 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:56.390 -07 000000618 INF: FPGA: Recv ZSGSRD 30555
17-03-18 01:18:56.400 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:56.400 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:56.400 -07 000000501 INF: FPGA: Recv ZSGSRD 30558
17-03-18 01:18:56.410 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:56.410 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:56.410 -07 000000626 INF: FPGA: Recv ZPIEZORD 26271
17-03-18 01:18:56.420 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:56.420 -07 000000480 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.555 V. Piezo Error = -9.4 V.
17-03-18 01:18:56.420 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30560 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30560 (-135.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30553 (-135.8 uncal um), Max = 30566 (-135.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:18:56.420 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30560, posNoise = 6, negNoise = 7
17-03-18 01:18:56.420 -07 000000480 INF: Z Motor: After move to -0.136640, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:56.420 -07 000000480 INF: Z Motor: Settle wait time = 1456 ms, measure time = 101 ms (allowed 150 ms), total time = 1557 ms
17-03-18 01:18:56.420 -07 000000480 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:18:56.470 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 01:18:56.470 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:18:56.470 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:56.470 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:56.470 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:56.470 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:56.470 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:18:56.470 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:56.480 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:56.480 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:18:56.480 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:18:56.480 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:18:56.490 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:18:56.490 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:18:56.490 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:18:56.540 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:18:56.840 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:18:56.840 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:18:56.840 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:18:56.840 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:18:56.880 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:18:56.880 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 01:18:56.880 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 01:18:56.960 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:18:56.960 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:56.960 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:18:56.960 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:18:56.980 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:56.980 -07 000000618 INF: Autofocus start
17-03-18 01:18:56.980 -07 000000618 INF: MeasureProfile start
17-03-18 01:18:56.980 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:56.990 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:18:56.990 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:18:56.990 -07 000000618 INF: MeasureProfile done
17-03-18 01:18:56.990 -07 000000618 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 01:18:56.990 -07 000000618 INF: Autofocus finished
17-03-18 01:18:57.190 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:18:57.190 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:18:57.200 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.13664727506335. ----------
17-03-18 01:18:57.200 -07 000000610 INF: Cycle	85	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:18:57.200 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28327, sync = True, waitForSettling = True)
17-03-18 01:18:57.200 -07 000000610 INF: Z Motor: Moving to -0.129673 mm, started at -0.136647 mm, distance = 6.97 um
17-03-18 01:18:57.200 -07 000000610 INF: FPGA: Xmit ZDACW 28327\n [Z Motor]
17-03-18 01:18:57.200 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:18:57.210 -07 000000610 INF: FPGA: 'ZDACW 28327' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:18:57.210 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:57.210 -07 000000606 INF: FPGA: Recv ZDACR 28327
17-03-18 01:18:57.220 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:57.220 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:18:57.250 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:18:57.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:18:57.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:57.370 -07 000000424 INF: FPGA: Recv ZSGSRD 29476
17-03-18 01:18:57.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:18:57.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:57.380 -07 000000625 INF: FPGA: Recv ZSGSRD 29478
17-03-18 01:18:57.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:57.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:57.390 -07 000000461 INF: FPGA: Recv ZSGSRD 29475
17-03-18 01:18:57.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:57.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:57.400 -07 000000502 INF: FPGA: Recv ZSGSRD 29474
17-03-18 01:18:57.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:57.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:57.410 -07 000000611 INF: FPGA: Recv ZSGSRD 29472
17-03-18 01:18:57.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:57.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:57.420 -07 000000585 INF: FPGA: Recv ZSGSRD 29483
17-03-18 01:18:57.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:57.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:57.430 -07 000000626 INF: FPGA: Recv ZSGSRD 29470
17-03-18 01:18:57.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:57.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:57.440 -07 000000487 INF: FPGA: Recv ZSGSRD 29473
17-03-18 01:18:57.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:57.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:57.450 -07 000000467 INF: FPGA: Recv ZSGSRD 29479
17-03-18 01:18:57.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:57.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:18:57.460 -07 000000606 INF: FPGA: Recv ZSGSRD 29476
17-03-18 01:18:57.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:57.470 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:18:57.470 -07 000000626 INF: FPGA: Recv ZPIEZORD 24878
17-03-18 01:18:57.480 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:18:57.480 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -10.1 V.
17-03-18 01:18:57.480 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29476 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29476 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29470 (-128.9 uncal um), Max = 29483 (-129.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:18:57.480 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29476, posNoise = 7, negNoise = 6
17-03-18 01:18:57.480 -07 000000610 INF: Z Motor: After move to -0.129673, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:18:57.480 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:18:57.480 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:18:57.480 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:18:57.480 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:18:57.480 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:18:57.480 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:18:57.480 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:18:57.480 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:18:57.480 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:18:57.480 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:18:57.480 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:18:57.480 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:18:57.480 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:18:57.490 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:18:57.490 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:18:57.490 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:18:57.490 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:18:57.500 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:18:57.500 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:18:57.500 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:18:57.500 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:18:57.500 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28503 150\n [Camera]
17-03-18 01:18:57.700 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:18:58.090 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:18:58.090 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:18:58.090 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:18:58.090 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:18:58.090 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:58.090 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:58.100 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:58.100 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:18:58.100 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:58.100 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:18:58.280 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28503 775
17-03-18 01:18:58.430 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:18:58.500 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:18:58.500 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:18:58.500 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:58.500 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:18:58.500 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:18:58.500 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:58.500 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:18:58.500 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:18:58.500 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:18:58.510 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:18:58.620 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:18:58.620 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:18:58.620 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:18:58.730 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:18:58.730 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:18:58.730 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:18:58.730 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:18:58.730 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:18:58.730 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:18:58.730 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:18:58.810 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:18:58.810 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:18:58.810 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28503 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-18 01:18:58.810 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:18:58.810 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.129683429101681. ------
17-03-18 01:18:58.820 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:18:58.820 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13631 mm
17-03-18 01:18:58.820 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:18:58.820 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:18:58.820 -07 000000625 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 01:18:58.820 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:18:58.820 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29776, sync = True, waitForSettling = False)
17-03-18 01:18:58.820 -07 000000501 INF: Z Motor: Moving to -0.136306 mm, started at -0.129683 mm, distance = -6.62 um
17-03-18 01:18:58.830 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:18:58.830 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:58.830 -07 000000585 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:18:58.840 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:18:58.840 -07 000000501 INF: FPGA: Xmit ZDACW 29776\n [Z Motor]
17-03-18 01:18:58.840 -07 000000625 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:58.840 -07 000000625 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:18:58.840 -07 000000625 INF: Y Motor: Moving 1340 steps-15
17-03-18 01:18:58.840 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 01:18:58.850 -07 000000501 INF: FPGA: 'ZDACW 29776' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:18:58.850 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:18:58.860 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:18:58.870 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:18:58.870 -07 000000479 INF: FPGA: Recv ZDACR 29776
17-03-18 01:18:58.880 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:18:58.880 -07 000000501 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 01:18:59.050 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:18:59.050 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:18:59.130 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:18:59.130 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:18:59.130 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:59.130 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:18:59.130 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:18:59.130 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:18:59.130 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:59.130 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:18:59.130 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-18 01:18:59.140 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:18:59.230 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 01:18:59.230 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:18:59.280 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:18:59.280 -07 000000501 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:18:59.290 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:18:59.290 -07 000000625 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:18:59.290 -07 000000625 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:18:59.290 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.838 mm, average velocity = 2.115 mm/sec
17-03-18 01:19:00.150 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.996267,
17-03-18 01:19:00.240 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:00.240 -07 000000626 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:19:00.250 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:00.250 -07 000000625 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:00.270 -07 000000625 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:19:00.270 -07 000000625 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:19:00.270 -07 000000625 INF: Y Motor: Moved to 69.0273 after 1451 ms (table move)
17-03-18 01:19:00.280 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136306 mm (DAC = 29776)
17-03-18 01:19:00.280 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:00.280 -07 000000467 INF: FPGA: Recv ZSGSRD 30511
17-03-18 01:19:00.290 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:00.290 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:00.290 -07 000000487 INF: FPGA: Recv ZSGSRD 30508
17-03-18 01:19:00.300 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:00.300 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:00.300 -07 000000618 INF: FPGA: Recv ZSGSRD 30502
17-03-18 01:19:00.310 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:00.310 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:00.310 -07 000000625 INF: FPGA: Recv ZSGSRD 30508
17-03-18 01:19:00.320 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:00.320 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:00.320 -07 000000480 INF: FPGA: Recv ZSGSRD 30508
17-03-18 01:19:00.330 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:00.330 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:00.330 -07 000000487 INF: FPGA: Recv ZSGSRD 30506
17-03-18 01:19:00.340 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:00.340 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:00.340 -07 000000618 INF: FPGA: Recv ZSGSRD 30507
17-03-18 01:19:00.350 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:00.350 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:00.350 -07 000000625 INF: FPGA: Recv ZSGSRD 30502
17-03-18 01:19:00.360 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:00.360 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:00.360 -07 000000501 INF: FPGA: Recv ZSGSRD 30506
17-03-18 01:19:00.370 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:00.370 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:00.370 -07 000000479 INF: FPGA: Recv ZSGSRD 30512
17-03-18 01:19:00.380 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:00.380 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:00.380 -07 000000424 INF: FPGA: Recv ZPIEZORD 26234
17-03-18 01:19:00.390 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:00.390 -07 000000606 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.544 V. Piezo Error = -9.4 V.
17-03-18 01:19:00.390 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30507 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30508 (-135.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30502 (-135.5 uncal um), Max = 30512 (-135.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:19:00.390 -07 000000606 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30507, posNoise = 5, negNoise = 5
17-03-18 01:19:00.390 -07 000000606 INF: Z Motor: After move to -0.136306, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:00.390 -07 000000606 INF: Z Motor: Settle wait time = 1453 ms, measure time = 111 ms (allowed 150 ms), total time = 1564 ms
17-03-18 01:19:00.390 -07 000000606 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:19:00.430 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 01:19:00.430 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:19:00.430 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:00.430 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:00.430 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:00.430 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:00.430 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:19:00.430 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:00.430 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:19:00.430 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:19:00.440 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:19:00.440 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:19:00.450 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:19:00.450 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:19:00.450 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:19:00.500 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:19:00.800 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:19:00.800 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:19:00.800 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:19:00.800 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:19:00.840 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:19:00.840 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 01:19:00.840 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 01:19:00.920 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:19:00.920 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:00.920 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:19:00.920 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:19:00.940 -07 000000467 INF: Autofocus start
17-03-18 01:19:00.940 -07 000000467 INF: MeasureProfile start
17-03-18 01:19:00.940 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:19:00.940 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:19:00.950 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:19:00.950 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:19:00.950 -07 000000467 INF: MeasureProfile done
17-03-18 01:19:00.950 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:19:00.950 -07 000000467 INF: Autofocus finished
17-03-18 01:19:01.150 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:19:01.150 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:19:01.150 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136306791819836. ----------
17-03-18 01:19:01.150 -07 000000610 INF: Cycle	85	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:19:01.160 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28300, sync = True, waitForSettling = True)
17-03-18 01:19:01.160 -07 000000610 INF: Z Motor: Moving to -0.129549 mm, started at -0.136307 mm, distance = 6.76 um
17-03-18 01:19:01.160 -07 000000610 INF: FPGA: Xmit ZDACW 28300\n [Z Motor]
17-03-18 01:19:01.160 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:19:01.170 -07 000000610 INF: FPGA: 'ZDACW 28300' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:01.170 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:19:01.170 -07 000000611 INF: FPGA: Recv ZDACR 28300
17-03-18 01:19:01.180 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:01.180 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:19:01.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:01.330 -07 000000424 INF: FPGA: Recv ZSGSRD 29455
17-03-18 01:19:01.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:01.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:01.340 -07 000000585 INF: FPGA: Recv ZSGSRD 29457
17-03-18 01:19:01.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:01.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:01.350 -07 000000461 INF: FPGA: Recv ZSGSRD 29457
17-03-18 01:19:01.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:01.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:01.360 -07 000000487 INF: FPGA: Recv ZSGSRD 29454
17-03-18 01:19:01.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:01.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:01.370 -07 000000474 INF: FPGA: Recv ZSGSRD 29457
17-03-18 01:19:01.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:01.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:01.380 -07 000000424 INF: FPGA: Recv ZSGSRD 29452
17-03-18 01:19:01.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:01.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:01.390 -07 000000606 INF: FPGA: Recv ZSGSRD 29457
17-03-18 01:19:01.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:01.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:01.400 -07 000000487 INF: FPGA: Recv ZSGSRD 29456
17-03-18 01:19:01.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:01.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:01.410 -07 000000474 INF: FPGA: Recv ZSGSRD 29455
17-03-18 01:19:01.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:01.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:01.420 -07 000000585 INF: FPGA: Recv ZSGSRD 29453
17-03-18 01:19:01.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:01.430 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:01.430 -07 000000626 INF: FPGA: Recv ZPIEZORD 24861
17-03-18 01:19:01.440 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:19:01.440 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.318 V. Piezo Error = -10.1 V.
17-03-18 01:19:01.440 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29455 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29456 (-128.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29452 (-128.8 uncal um), Max = 29457 (-128.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:19:01.440 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29455, posNoise = 2, negNoise = 3
17-03-18 01:19:01.440 -07 000000610 INF: Z Motor: After move to -0.129549, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:01.440 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:19:01.440 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:01.440 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:01.440 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:01.440 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:01.440 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:19:01.440 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:01.440 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:19:01.440 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:19:01.440 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:19:01.440 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:19:01.440 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:19:01.440 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:19:01.440 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:19:01.440 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:19:01.440 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:19:01.450 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:19:01.450 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:19:01.450 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:19:01.450 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:19:01.450 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:19:01.460 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28477 150\n [Camera]
17-03-18 01:19:01.650 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:19:02.050 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:19:02.050 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:19:02.050 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:02.050 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:19:02.050 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:19:02.050 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:02.050 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:02.050 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:19:02.050 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:02.050 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:19:02.240 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28477 775
17-03-18 01:19:02.250 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:19:02.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:19:02.390 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:19:02.450 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:19:02.450 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:19:02.450 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:02.450 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:19:02.450 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:19:02.450 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:02.450 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:02.450 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:19:02.460 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:19:02.460 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:19:02.580 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:19:02.580 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:19:02.580 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:02.690 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:19:02.690 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:19:02.690 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:02.690 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:02.690 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:19:02.690 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:02.690 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:19:02.770 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:19:02.770 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:19:02.770 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28477 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:19:02.770 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:19:02.770 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129548520646704. ------
17-03-18 01:19:02.770 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13589 mm
17-03-18 01:19:02.770 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:19:02.770 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:19:02.780 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:19:02.780 -07 000000479 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 01:19:02.780 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:02.780 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29686, sync = True, waitForSettling = False)
17-03-18 01:19:02.780 -07 000000606 INF: Z Motor: Moving to -0.135894 mm, started at -0.129549 mm, distance = -6.35 um
17-03-18 01:19:02.780 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:19:02.780 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:19:02.780 -07 000000625 INF: FPGA: Recv YRDPOS 141369
17-03-18 01:19:02.790 -07 000000606 INF: FPGA: Xmit ZDACW 29686\n [Z Motor]
17-03-18 01:19:02.790 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:02.790 -07 000000479 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:02.790 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:19:02.790 -07 000000479 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:19:02.790 -07 000000479 INF: Y Motor: Moving 1352 steps-31
17-03-18 01:19:02.800 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:19:02.800 -07 000000606 INF: FPGA: 'ZDACW 29686' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:19:02.810 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:19:02.820 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:19:02.820 -07 000000626 INF: FPGA: Recv ZDACR 29686
17-03-18 01:19:02.830 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:19:02.830 -07 000000606 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 01:19:03.000 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:19:03.000 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 01:19:03.090 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:19:03.090 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:19:03.090 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:03.090 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:19:03.090 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:19:03.090 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:03.100 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:03.100 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:03.100 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 01:19:03.100 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:19:03.180 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 01:19:03.180 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 01:19:03.230 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:03.230 -07 000000626 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:19:03.240 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:19:03.240 -07 000000479 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:03.240 -07 000000479 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:19:03.240 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.156 mm/sec
17-03-18 01:19:04.190 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:04.190 -07 000000501 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:19:04.200 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:04.200 -07 000000479 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:04.220 -07 000000479 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:19:04.220 -07 000000479 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:19:04.220 -07 000000479 INF: Y Motor: Moved to 69.8633 after 1446 ms (table move)
17-03-18 01:19:04.230 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135894 mm (DAC = 29686)
17-03-18 01:19:04.230 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:04.230 -07 000000502 INF: FPGA: Recv ZSGSRD 30442
17-03-18 01:19:04.240 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:04.240 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:04.240 -07 000000474 INF: FPGA: Recv ZSGSRD 30441
17-03-18 01:19:04.250 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:04.250 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:04.250 -07 000000611 INF: FPGA: Recv ZSGSRD 30448
17-03-18 01:19:04.260 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:04.260 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:04.260 -07 000000479 INF: FPGA: Recv ZSGSRD 30447
17-03-18 01:19:04.270 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:04.270 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:04.270 -07 000000625 INF: FPGA: Recv ZSGSRD 30442
17-03-18 01:19:04.280 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:04.280 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:04.280 -07 000000474 INF: FPGA: Recv ZSGSRD 30445
17-03-18 01:19:04.290 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:04.290 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:04.290 -07 000000501 INF: FPGA: Recv ZSGSRD 30445
17-03-18 01:19:04.300 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:04.300 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:04.300 -07 000000467 INF: FPGA: Recv ZSGSRD 30439
17-03-18 01:19:04.310 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:04.310 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:04.310 -07 000000502 INF: FPGA: Recv ZSGSRD 30441
17-03-18 01:19:04.320 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:04.320 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:04.320 -07 000000606 INF: FPGA: Recv ZSGSRD 30449
17-03-18 01:19:04.330 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:04.330 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:04.330 -07 000000501 INF: FPGA: Recv ZPIEZORD 26180
17-03-18 01:19:04.340 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:04.340 -07 000000585 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.530 V. Piezo Error = -9.4 V.
17-03-18 01:19:04.340 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30444 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30444 (-135.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30439 (-135.1 uncal um), Max = 30449 (-135.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:19:04.340 -07 000000585 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30444, posNoise = 5, negNoise = 5
17-03-18 01:19:04.340 -07 000000585 INF: Z Motor: After move to -0.135894, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:04.340 -07 000000585 INF: Z Motor: Settle wait time = 1448 ms, measure time = 110 ms (allowed 150 ms), total time = 1558 ms
17-03-18 01:19:04.340 -07 000000585 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:19:04.380 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 01:19:04.380 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:19:04.380 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:04.380 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:04.380 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:04.380 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:04.380 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:19:04.380 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:04.380 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:19:04.380 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:19:04.390 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:19:04.390 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:19:04.400 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:19:04.400 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:19:04.400 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:19:04.450 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 01:19:04.750 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 01:19:04.750 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 01:19:04.750 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:19:04.750 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:19:04.780 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:19:04.780 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 01:19:04.790 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 387 ms overall
17-03-18 01:19:04.860 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:19:04.860 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:04.860 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:19:04.860 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:19:04.890 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:19:04.890 -07 000000585 INF: Autofocus start
17-03-18 01:19:04.890 -07 000000585 INF: MeasureProfile start
17-03-18 01:19:04.890 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:19:04.900 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:19:04.900 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:19:04.900 -07 000000585 INF: MeasureProfile done
17-03-18 01:19:04.900 -07 000000585 INF: X=32  Z correction [um]=0.1299841
17-03-18 01:19:04.900 -07 000000585 INF: Autofocus finished
17-03-18 01:19:05.100 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:19:05.100 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:19:05.100 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.135902066454906. ----------
17-03-18 01:19:05.100 -07 000000610 INF: Cycle	85	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:19:05.110 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28227, sync = True, waitForSettling = True)
17-03-18 01:19:05.110 -07 000000610 INF: Z Motor: Moving to -0.129215 mm, started at -0.135902 mm, distance = 6.69 um
17-03-18 01:19:05.110 -07 000000610 INF: FPGA: Xmit ZDACW 28227\n [Z Motor]
17-03-18 01:19:05.110 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:19:05.120 -07 000000610 INF: FPGA: 'ZDACW 28227' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:19:05.120 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:19:05.120 -07 000000618 INF: FPGA: Recv ZDACR 28227
17-03-18 01:19:05.130 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:05.130 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:19:05.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:05.280 -07 000000606 INF: FPGA: Recv ZSGSRD 29403
17-03-18 01:19:05.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:05.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:05.290 -07 000000461 INF: FPGA: Recv ZSGSRD 29408
17-03-18 01:19:05.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:05.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:05.300 -07 000000474 INF: FPGA: Recv ZSGSRD 29404
17-03-18 01:19:05.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:05.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:05.310 -07 000000626 INF: FPGA: Recv ZSGSRD 29406
17-03-18 01:19:05.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:05.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:05.320 -07 000000606 INF: FPGA: Recv ZSGSRD 29398
17-03-18 01:19:05.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:05.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:05.330 -07 000000625 INF: FPGA: Recv ZSGSRD 29404
17-03-18 01:19:05.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:05.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:05.340 -07 000000585 INF: FPGA: Recv ZSGSRD 29406
17-03-18 01:19:05.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:05.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:05.350 -07 000000618 INF: FPGA: Recv ZSGSRD 29405
17-03-18 01:19:05.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:05.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:05.360 -07 000000487 INF: FPGA: Recv ZSGSRD 29408
17-03-18 01:19:05.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:05.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:05.370 -07 000000611 INF: FPGA: Recv ZSGSRD 29399
17-03-18 01:19:05.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:05.380 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:05.380 -07 000000501 INF: FPGA: Recv ZPIEZORD 24838
17-03-18 01:19:05.390 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:05.390 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.307 V. Piezo Error = -10.0 V.
17-03-18 01:19:05.390 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29404 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29404 (-128.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29398 (-128.4 uncal um), Max = 29408 (-128.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:19:05.390 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29404, posNoise = 4, negNoise = 6
17-03-18 01:19:05.390 -07 000000610 INF: Z Motor: After move to -0.129215, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:05.390 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:19:05.390 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:05.390 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:05.390 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:05.390 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:05.390 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:19:05.390 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:05.390 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:19:05.390 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:19:05.390 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:19:05.390 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:19:05.390 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:19:05.390 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:19:05.400 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:19:05.400 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:19:05.400 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:19:05.400 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:19:05.400 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:19:05.400 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:19:05.410 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:19:05.410 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:19:05.410 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28404 150\n [Camera]
17-03-18 01:19:05.510 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.978563,
17-03-18 01:19:05.610 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:19:06.000 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:19:06.000 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:19:06.000 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:06.000 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:19:06.000 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:19:06.000 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:06.000 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:06.000 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:19:06.010 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:06.010 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:19:06.190 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28404 775
17-03-18 01:19:06.340 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:19:06.390 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 01:19:06.390 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 01:19:06.390 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:06.390 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:19:06.390 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:19:06.390 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:19:06.390 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:06.400 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:19:06.400 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:19:06.400 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:19:06.530 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:19:06.530 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:19:06.530 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:06.640 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:19:06.640 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:19:06.640 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:06.650 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:06.650 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:19:06.650 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:06.650 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:19:06.720 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:19:06.720 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:19:06.720 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28404 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-18 01:19:06.720 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:19:06.720 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129220885827474. ------
17-03-18 01:19:06.730 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:19:06.730 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13568 mm
17-03-18 01:19:06.730 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:19:06.730 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:19:06.730 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:19:06.730 -07 000000625 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 01:19:06.730 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29639, sync = True, waitForSettling = False)
17-03-18 01:19:06.730 -07 000000606 INF: Z Motor: Moving to -0.135679 mm, started at -0.129221 mm, distance = -6.46 um
17-03-18 01:19:06.740 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:19:06.740 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:06.740 -07 000000467 INF: FPGA: Recv YRDPOS 143081
17-03-18 01:19:06.750 -07 000000606 INF: FPGA: Xmit ZDACW 29639\n [Z Motor]
17-03-18 01:19:06.750 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:19:06.750 -07 000000625 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:06.750 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 01:19:06.750 -07 000000625 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:19:06.750 -07 000000625 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:19:06.760 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:19:06.760 -07 000000606 INF: FPGA: 'ZDACW 29639' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:19:06.770 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:19:06.780 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:19:06.780 -07 000000502 INF: FPGA: Recv ZDACR 29639
17-03-18 01:19:06.790 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:19:06.790 -07 000000606 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 01:19:06.960 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:19:06.960 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:19:07.040 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:19:07.040 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:19:07.040 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:07.040 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:19:07.040 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:19:07.040 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:07.050 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:07.050 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:07.050 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 01:19:07.050 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:19:07.140 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 01:19:07.140 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 393 ms overall
17-03-18 01:19:07.190 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:07.190 -07 000000611 INF: FPGA: Recv YRDPOS 144769
17-03-18 01:19:07.200 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:19:07.200 -07 000000625 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:07.200 -07 000000625 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:19:07.200 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.136 mm/sec
17-03-18 01:19:07.250 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:19:07.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:19:08.150 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:08.150 -07 000000479 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:19:08.160 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:08.160 -07 000000625 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:08.180 -07 000000625 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:19:08.180 -07 000000625 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:19:08.180 -07 000000625 INF: Y Motor: Moved to 70.6885 after 1448 ms (table move)
17-03-18 01:19:08.180 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135679 mm (DAC = 29639)
17-03-18 01:19:08.190 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:08.190 -07 000000626 INF: FPGA: Recv ZSGSRD 30411
17-03-18 01:19:08.200 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:08.200 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:08.200 -07 000000474 INF: FPGA: Recv ZSGSRD 30413
17-03-18 01:19:08.210 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:08.210 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:08.210 -07 000000467 INF: FPGA: Recv ZSGSRD 30409
17-03-18 01:19:08.220 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:08.220 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:08.220 -07 000000502 INF: FPGA: Recv ZSGSRD 30413
17-03-18 01:19:08.230 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:08.230 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:08.230 -07 000000618 INF: FPGA: Recv ZSGSRD 30411
17-03-18 01:19:08.240 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:08.240 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:08.240 -07 000000474 INF: FPGA: Recv ZSGSRD 30410
17-03-18 01:19:08.250 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:08.250 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:08.250 -07 000000626 INF: FPGA: Recv ZSGSRD 30410
17-03-18 01:19:08.260 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:08.260 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:08.260 -07 000000502 INF: FPGA: Recv ZSGSRD 30406
17-03-18 01:19:08.270 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:08.270 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:08.270 -07 000000618 INF: FPGA: Recv ZSGSRD 30410
17-03-18 01:19:08.280 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:08.280 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:08.280 -07 000000606 INF: FPGA: Recv ZSGSRD 30405
17-03-18 01:19:08.290 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:08.290 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:08.290 -07 000000501 INF: FPGA: Recv ZPIEZORD 26157
17-03-18 01:19:08.300 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:08.300 -07 000000461 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.523 V. Piezo Error = -9.3 V.
17-03-18 01:19:08.300 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30410 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30410 (-134.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30405 (-134.9 uncal um), Max = 30413 (-134.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:19:08.300 -07 000000461 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30410, posNoise = 3, negNoise = 5
17-03-18 01:19:08.300 -07 000000461 INF: Z Motor: After move to -0.135679, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:08.300 -07 000000461 INF: Z Motor: Settle wait time = 1452 ms, measure time = 111 ms (allowed 150 ms), total time = 1563 ms
17-03-18 01:19:08.300 -07 000000461 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:19:08.340 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 01:19:08.340 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:19:08.340 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:08.340 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:08.340 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:08.340 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:08.340 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:19:08.340 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:08.340 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:19:08.340 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:19:08.350 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:19:08.350 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:19:08.360 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:19:08.360 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:19:08.360 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:19:08.400 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:19:08.700 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:19:08.700 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:19:08.700 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:19:08.710 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:19:08.750 -07 000000479 INF: FPGA: Recv @CAMSNAP 382
17-03-18 01:19:08.750 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 01:19:08.750 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 386 ms overall
17-03-18 01:19:08.820 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:19:08.820 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:08.820 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:19:08.820 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:19:08.850 -07 000000611 INF: Autofocus start
17-03-18 01:19:08.850 -07 000000611 INF: MeasureProfile start
17-03-18 01:19:08.850 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:19:08.850 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:19:08.860 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:19:08.860 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:19:08.860 -07 000000611 INF: MeasureProfile done
17-03-18 01:19:08.860 -07 000000611 INF: X=-112  Z correction [um]=-0.5485987
17-03-18 01:19:08.860 -07 000000611 INF: Autofocus finished
17-03-18 01:19:09.060 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:19:09.060 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:19:09.060 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135683643242086. ----------
17-03-18 01:19:09.070 -07 000000610 INF: Cycle	85	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:19:09.070 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28032, sync = True, waitForSettling = True)
17-03-18 01:19:09.070 -07 000000610 INF: Z Motor: Moving to -0.128322 mm, started at -0.135684 mm, distance = 7.36 um
17-03-18 01:19:09.070 -07 000000610 INF: FPGA: Xmit ZDACW 28032\n [Z Motor]
17-03-18 01:19:09.070 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 01:19:09.080 -07 000000610 INF: FPGA: 'ZDACW 28032' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:19:09.080 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:19:09.080 -07 000000487 INF: FPGA: Recv ZDACR 28032
17-03-18 01:19:09.090 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:09.090 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:19:09.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:09.240 -07 000000585 INF: FPGA: Recv ZSGSRD 29263
17-03-18 01:19:09.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:09.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:09.250 -07 000000479 INF: FPGA: Recv ZSGSRD 29268
17-03-18 01:19:09.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:09.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:09.260 -07 000000606 INF: FPGA: Recv ZSGSRD 29268
17-03-18 01:19:09.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:09.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:09.270 -07 000000474 INF: FPGA: Recv ZSGSRD 29261
17-03-18 01:19:09.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:09.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:09.280 -07 000000480 INF: FPGA: Recv ZSGSRD 29269
17-03-18 01:19:09.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:09.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:09.290 -07 000000461 INF: FPGA: Recv ZSGSRD 29267
17-03-18 01:19:09.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:09.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:09.300 -07 000000606 INF: FPGA: Recv ZSGSRD 29265
17-03-18 01:19:09.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:09.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:09.310 -07 000000618 INF: FPGA: Recv ZSGSRD 29262
17-03-18 01:19:09.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:09.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:09.320 -07 000000467 INF: FPGA: Recv ZSGSRD 29261
17-03-18 01:19:09.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:09.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:09.330 -07 000000461 INF: FPGA: Recv ZSGSRD 29263
17-03-18 01:19:09.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:09.340 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:09.340 -07 000000424 INF: FPGA: Recv ZPIEZORD 24678
17-03-18 01:19:09.350 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:09.350 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.277 V. Piezo Error = -10.1 V.
17-03-18 01:19:09.350 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29265 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29264 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29261 (-127.5 uncal um), Max = 29269 (-127.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:19:09.350 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29265, posNoise = 4, negNoise = 4
17-03-18 01:19:09.350 -07 000000610 INF: Z Motor: After move to -0.128322, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:09.350 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:19:09.350 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:09.350 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:09.350 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:09.350 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:19:09.350 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:09.350 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:19:09.350 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:19:09.350 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:09.350 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:19:09.350 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:19:09.350 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:19:09.350 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:19:09.360 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:19:09.360 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:19:09.360 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:19:09.360 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:19:09.370 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:19:09.370 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:19:09.370 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:19:09.370 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:19:09.370 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28209 150\n [Camera]
17-03-18 01:19:09.570 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:19:09.960 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:19:09.960 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:19:09.960 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:09.960 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:19:09.960 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:19:09.960 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:09.960 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:09.960 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:19:09.970 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:09.970 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:19:10.150 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28209 775
17-03-18 01:19:10.300 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:19:10.360 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:19:10.360 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:19:10.360 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:10.360 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:19:10.360 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:19:10.360 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:10.370 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:10.370 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:19:10.370 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:10.380 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:19:10.490 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:19:10.490 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:19:10.490 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:10.600 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:19:10.600 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:19:10.600 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:10.600 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:10.600 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:10.600 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:19:10.600 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:19:10.680 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:19:10.680 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:19:10.680 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28209 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-18 01:19:10.680 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:19:10.680 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128327920339769. ------
17-03-18 01:19:10.690 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:19:10.690 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13500 mm
17-03-18 01:19:10.690 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:19:10.690 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:19:10.690 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29490, sync = True, waitForSettling = False)
17-03-18 01:19:10.690 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:19:10.690 -07 000000467 INF: Z Motor: Moving to -0.134997 mm, started at -0.128328 mm, distance = -6.67 um
17-03-18 01:19:10.690 -07 000000502 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 01:19:10.700 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:10.700 -07 000000467 INF: FPGA: Xmit ZDACW 29490\n [Z Motor]
17-03-18 01:19:10.700 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:19:10.710 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:10.710 -07 000000467 INF: FPGA: 'ZDACW 29490' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:19:10.710 -07 000000501 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:19:10.720 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:19:10.720 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:19:10.720 -07 000000502 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:10.720 -07 000000502 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:19:10.720 -07 000000502 INF: Y Motor: Moving 1351 steps-30
17-03-18 01:19:10.730 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:19:10.730 -07 000000479 INF: FPGA: Recv ZDACR 29490
17-03-18 01:19:10.740 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:19:10.740 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:19:10.740 -07 000000467 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:19:10.920 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.973092,
17-03-18 01:19:10.920 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:19:10.920 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:19:10.990 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 01:19:10.990 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:19:10.990 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:11.000 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:19:11.000 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:19:11.000 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:11.000 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:19:11.000 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:19:11.000 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-18 01:19:11.000 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:19:11.110 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 01:19:11.110 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:19:11.160 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:11.160 -07 000000585 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:19:11.170 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:11.170 -07 000000502 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:11.170 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:19:11.170 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.137 mm/sec
17-03-18 01:19:12.120 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:12.120 -07 000000606 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:19:12.130 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:12.130 -07 000000502 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:12.150 -07 000000502 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:19:12.150 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:19:12.150 -07 000000502 INF: Y Motor: Moved to 71.5190 after 1463 ms (table move)
17-03-18 01:19:12.160 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134997 mm (DAC = 29490)
17-03-18 01:19:12.160 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:12.160 -07 000000611 INF: FPGA: Recv ZSGSRD 30309
17-03-18 01:19:12.170 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:12.170 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:12.170 -07 000000474 INF: FPGA: Recv ZSGSRD 30309
17-03-18 01:19:12.180 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:12.180 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:12.180 -07 000000625 INF: FPGA: Recv ZSGSRD 30294
17-03-18 01:19:12.190 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:12.190 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:12.190 -07 000000502 INF: FPGA: Recv ZSGSRD 30313
17-03-18 01:19:12.200 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:12.200 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:12.200 -07 000000611 INF: FPGA: Recv ZSGSRD 30313
17-03-18 01:19:12.210 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:12.210 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:12.210 -07 000000424 INF: FPGA: Recv ZSGSRD 30302
17-03-18 01:19:12.220 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:12.220 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:12.220 -07 000000625 INF: FPGA: Recv ZSGSRD 30297
17-03-18 01:19:12.230 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:12.230 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:12.230 -07 000000502 INF: FPGA: Recv ZSGSRD 30290
17-03-18 01:19:12.240 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:12.240 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:12.240 -07 000000618 INF: FPGA: Recv ZSGSRD 30305
17-03-18 01:19:12.250 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:12.250 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:12.250 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:19:12.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:19:12.250 -07 000000625 INF: FPGA: Recv ZSGSRD 30303
17-03-18 01:19:12.260 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:12.260 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:12.260 -07 000000585 INF: FPGA: Recv ZPIEZORD 26034
17-03-18 01:19:12.270 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:12.270 -07 000000626 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -9.4 V.
17-03-18 01:19:12.270 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30304 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30304 (-134.2 uncal um), StdDev = 8 (0.1 uncal um), Range = 23 (0.1 uncal um), Min = 30290 (-134.1 uncal um), Max = 30313 (-134.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-18 01:19:12.270 -07 000000626 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30304, posNoise = 9, negNoise = 14
17-03-18 01:19:12.270 -07 000000626 INF: Z Motor: After move to -0.134997, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:12.270 -07 000000626 INF: Z Motor: Settle wait time = 1466 ms, measure time = 110 ms (allowed 150 ms), total time = 1576 ms
17-03-18 01:19:12.270 -07 000000626 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:19:12.310 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 01:19:12.310 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:19:12.310 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:12.310 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:12.310 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:12.310 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:12.310 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:19:12.310 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:12.320 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:19:12.320 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:19:12.320 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:19:12.320 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:19:12.330 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:19:12.330 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:19:12.330 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:19:12.380 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 01:19:12.680 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 01:19:12.680 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 01:19:12.680 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:19:12.680 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:19:12.720 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:19:12.720 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:19:12.720 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 01:19:12.810 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:19:12.810 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:12.810 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:19:12.810 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 01:19:12.920 -07 000000501 INF: Autofocus start
17-03-18 01:19:12.920 -07 000000501 INF: MeasureProfile start
17-03-18 01:19:12.920 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:19:12.930 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:19:12.930 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:19:12.930 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:19:12.940 -07 000000501 INF: MeasureProfile done
17-03-18 01:19:12.940 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:19:12.940 -07 000000501 INF: Autofocus finished
17-03-18 01:19:13.130 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:19:13.130 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:19:13.140 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135002676755059. ----------
17-03-18 01:19:13.140 -07 000000610 INF: Cycle	85	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:19:13.140 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27997, sync = True, waitForSettling = True)
17-03-18 01:19:13.140 -07 000000610 INF: Z Motor: Moving to -0.128162 mm, started at -0.135003 mm, distance = 6.84 um
17-03-18 01:19:13.140 -07 000000610 INF: FPGA: Xmit ZDACW 27997\n [Z Motor]
17-03-18 01:19:13.150 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:19:13.150 -07 000000610 INF: FPGA: 'ZDACW 27997' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:19:13.150 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:19:13.150 -07 000000480 INF: FPGA: Recv ZDACR 27997
17-03-18 01:19:13.160 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:13.160 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:19:13.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:13.310 -07 000000611 INF: FPGA: Recv ZSGSRD 29240
17-03-18 01:19:13.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:13.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:13.320 -07 000000626 INF: FPGA: Recv ZSGSRD 29234
17-03-18 01:19:13.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:13.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:13.330 -07 000000618 INF: FPGA: Recv ZSGSRD 29240
17-03-18 01:19:13.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:13.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:13.340 -07 000000625 INF: FPGA: Recv ZSGSRD 29240
17-03-18 01:19:13.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:13.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:13.350 -07 000000611 INF: FPGA: Recv ZSGSRD 29237
17-03-18 01:19:13.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:13.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:13.360 -07 000000474 INF: FPGA: Recv ZSGSRD 29239
17-03-18 01:19:13.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:13.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:13.370 -07 000000618 INF: FPGA: Recv ZSGSRD 29239
17-03-18 01:19:13.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:13.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:13.380 -07 000000626 INF: FPGA: Recv ZSGSRD 29243
17-03-18 01:19:13.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:13.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:13.390 -07 000000424 INF: FPGA: Recv ZSGSRD 29242
17-03-18 01:19:13.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:13.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:13.400 -07 000000474 INF: FPGA: Recv ZSGSRD 29238
17-03-18 01:19:13.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:13.410 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:13.410 -07 000000618 INF: FPGA: Recv ZPIEZORD 24660
17-03-18 01:19:13.420 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:13.420 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.272 V. Piezo Error = -10.0 V.
17-03-18 01:19:13.420 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29239 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29240 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29234 (-127.4 uncal um), Max = 29243 (-127.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:19:13.420 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29239, posNoise = 4, negNoise = 5
17-03-18 01:19:13.420 -07 000000610 INF: Z Motor: After move to -0.128162, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:13.420 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:19:13.420 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:13.420 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:13.420 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:13.420 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:13.420 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:19:13.420 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:19:13.420 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:19:13.420 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:13.420 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:19:13.420 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:19:13.420 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:19:13.420 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:19:13.430 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:19:13.430 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:19:13.430 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:19:13.430 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:19:13.440 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:19:13.440 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:19:13.440 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:19:13.440 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:19:13.440 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28174 150\n [Camera]
17-03-18 01:19:13.640 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:19:14.030 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:19:14.030 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:19:14.030 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:14.030 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:19:14.030 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:19:14.040 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:14.040 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:14.040 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:19:14.040 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:14.040 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:19:14.220 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28174 775
17-03-18 01:19:14.370 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:19:14.430 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:19:14.430 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:19:14.430 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:14.440 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:19:14.440 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:19:14.440 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:14.440 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:14.440 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:19:14.440 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:19:14.450 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:19:14.560 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:19:14.560 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:19:14.560 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:14.670 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:19:14.670 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:19:14.670 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:14.680 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:14.680 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:19:14.680 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:14.680 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:19:14.750 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:19:14.750 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:19:14.750 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28174 150' command took 2 ms to send, 1309 ms to get response, and 1315 ms overall
17-03-18 01:19:14.760 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:19:14.760 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128160890824084. ------
17-03-18 01:19:14.760 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:19:14.760 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13455 mm
17-03-18 01:19:14.760 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:19:14.760 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:19:14.760 -07 000000618 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 01:19:14.760 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:19:14.760 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29393, sync = True, waitForSettling = False)
17-03-18 01:19:14.760 -07 000000606 INF: Z Motor: Moving to -0.134553 mm, started at -0.128161 mm, distance = -6.39 um
17-03-18 01:19:14.770 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:19:14.770 -07 000000606 INF: FPGA: Xmit ZDACW 29393\n [Z Motor]
17-03-18 01:19:14.770 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:19:14.780 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:14.780 -07 000000606 INF: FPGA: 'ZDACW 29393' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:19:14.780 -07 000000625 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:19:14.790 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:19:14.790 -07 000000618 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:14.790 -07 000000618 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:19:14.790 -07 000000618 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:19:14.790 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:19:14.800 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:19:14.800 -07 000000625 INF: FPGA: Recv ZDACR 29393
17-03-18 01:19:14.810 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:19:14.810 -07 000000606 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 01:19:14.810 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:19:14.990 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:19:14.990 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 01:19:15.080 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:19:15.080 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:19:15.080 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:15.080 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:19:15.080 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:19:15.080 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:15.080 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:15.080 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:15.080 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 01:19:15.090 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:19:15.180 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 01:19:15.180 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:19:15.230 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:15.240 -07 000000626 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:19:15.250 -07 000000618 INF: FPGA: 'YRDPOS' command took 8 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:19:15.250 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:15.250 -07 000000618 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 01:19:15.250 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-18 01:19:16.200 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:16.200 -07 000000487 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:19:16.210 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:16.210 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:16.230 -07 000000618 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:19:16.230 -07 000000618 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:19:16.230 -07 000000618 INF: Y Motor: Moved to 72.3496 after 1470 ms (table move)
17-03-18 01:19:16.240 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134553 mm (DAC = 29393)
17-03-18 01:19:16.240 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:16.240 -07 000000424 INF: FPGA: Recv ZSGSRD 30230
17-03-18 01:19:16.250 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:19:16.250 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:16.250 -07 000000611 INF: FPGA: Recv ZSGSRD 30232
17-03-18 01:19:16.260 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:16.260 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:16.260 -07 000000625 INF: FPGA: Recv ZSGSRD 30239
17-03-18 01:19:16.270 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:16.270 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:16.270 -07 000000461 INF: FPGA: Recv ZSGSRD 30234
17-03-18 01:19:16.280 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:16.290 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.977204,
17-03-18 01:19:16.300 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:16.300 -07 000000501 INF: FPGA: Recv ZSGSRD 30230
17-03-18 01:19:16.310 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:19:16.330 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:16.330 -07 000000501 INF: FPGA: Recv ZSGSRD 30235
17-03-18 01:19:16.340 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:19:16.340 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:16.340 -07 000000618 INF: FPGA: Recv ZSGSRD 30243
17-03-18 01:19:16.350 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:16.360 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:16.360 -07 000000625 INF: FPGA: Recv ZSGSRD 30236
17-03-18 01:19:16.370 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:19:16.370 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:16.370 -07 000000611 INF: FPGA: Recv ZSGSRD 30234
17-03-18 01:19:16.380 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:16.390 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:16.390 -07 000000502 INF: FPGA: Recv ZSGSRD 30233
17-03-18 01:19:16.400 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:19:16.400 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:16.400 -07 000000474 INF: FPGA: Recv ZPIEZORD 25953
17-03-18 01:19:16.410 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:16.410 -07 000000467 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.485 V. Piezo Error = -9.4 V.
17-03-18 01:19:16.410 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30235 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30234 (-133.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30230 (-133.7 uncal um), Max = 30243 (-133.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:19:16.410 -07 000000467 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30235, posNoise = 8, negNoise = 5
17-03-18 01:19:16.410 -07 000000467 INF: Z Motor: After move to -0.134553, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:16.410 -07 000000467 INF: Z Motor: Settle wait time = 1473 ms, measure time = 169 ms (allowed 150 ms), total time = 1642 ms
17-03-18 01:19:16.410 -07 000000467 INF: Z Motor: Warning: Actual position measuring time = 169 ms, longer than max expected time of 150 ms
17-03-18 01:19:16.410 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1646 ms
17-03-18 01:19:16.410 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:19:16.410 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:16.410 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:16.410 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:16.410 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:16.410 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:19:16.410 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:16.420 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:19:16.420 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:19:16.420 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:19:16.420 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:19:16.430 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:19:16.430 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:19:16.430 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:19:16.480 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 01:19:16.780 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 01:19:16.780 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 01:19:16.780 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:19:16.780 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:19:16.820 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:19:16.820 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 01:19:16.820 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 01:19:16.900 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:19:16.900 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:16.900 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:19:16.900 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 01:19:16.920 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:19:16.920 -07 000000625 INF: Autofocus start
17-03-18 01:19:16.920 -07 000000625 INF: MeasureProfile start
17-03-18 01:19:16.920 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:19:16.930 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:19:16.930 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:19:16.930 -07 000000625 INF: MeasureProfile done
17-03-18 01:19:16.930 -07 000000625 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:19:16.930 -07 000000625 INF: Autofocus finished
17-03-18 01:19:17.130 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:19:17.130 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:19:17.130 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.134559406117278. ----------
17-03-18 01:19:17.130 -07 000000610 INF: Cycle	85	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:19:17.140 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27901, sync = True, waitForSettling = True)
17-03-18 01:19:17.140 -07 000000610 INF: Z Motor: Moving to -0.127723 mm, started at -0.134559 mm, distance = 6.84 um
17-03-18 01:19:17.140 -07 000000610 INF: FPGA: Xmit ZDACW 27901\n [Z Motor]
17-03-18 01:19:17.140 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 01:19:17.150 -07 000000610 INF: FPGA: 'ZDACW 27901' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:19:17.150 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:19:17.150 -07 000000611 INF: FPGA: Recv ZDACR 27901
17-03-18 01:19:17.160 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:17.160 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:19:17.250 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:19:17.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:19:17.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:17.310 -07 000000618 INF: FPGA: Recv ZSGSRD 29168
17-03-18 01:19:17.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:17.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:17.320 -07 000000480 INF: FPGA: Recv ZSGSRD 29171
17-03-18 01:19:17.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:17.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:17.330 -07 000000474 INF: FPGA: Recv ZSGSRD 29172
17-03-18 01:19:17.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:17.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:17.340 -07 000000424 INF: FPGA: Recv ZSGSRD 29169
17-03-18 01:19:17.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:17.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:17.350 -07 000000487 INF: FPGA: Recv ZSGSRD 29166
17-03-18 01:19:17.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:17.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:17.360 -07 000000461 INF: FPGA: Recv ZSGSRD 29177
17-03-18 01:19:17.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:17.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:17.370 -07 000000618 INF: FPGA: Recv ZSGSRD 29169
17-03-18 01:19:17.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:17.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:17.380 -07 000000424 INF: FPGA: Recv ZSGSRD 29169
17-03-18 01:19:17.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:17.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:17.390 -07 000000501 INF: FPGA: Recv ZSGSRD 29172
17-03-18 01:19:17.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:17.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:17.400 -07 000000461 INF: FPGA: Recv ZSGSRD 29171
17-03-18 01:19:17.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:17.410 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:17.410 -07 000000502 INF: FPGA: Recv ZPIEZORD 24594
17-03-18 01:19:17.420 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:17.420 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.257 V. Piezo Error = -10.0 V.
17-03-18 01:19:17.420 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29170 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29170 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29166 (-126.9 uncal um), Max = 29177 (-127.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:19:17.420 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29170, posNoise = 7, negNoise = 4
17-03-18 01:19:17.420 -07 000000610 INF: Z Motor: After move to -0.127723, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:17.420 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:19:17.420 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:17.420 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:17.420 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:17.420 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:19:17.420 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:19:17.420 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:19:17.420 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:17.420 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:17.420 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:19:17.420 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:19:17.420 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:19:17.420 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:19:17.430 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:19:17.430 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:19:17.430 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:19:17.430 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:19:17.440 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:19:17.440 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:19:17.440 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:19:17.440 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:19:17.440 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28077 150\n [Camera]
17-03-18 01:19:17.640 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:19:18.030 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:19:18.030 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:19:18.030 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:18.030 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:19:18.030 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:19:18.030 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:18.030 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:18.030 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:19:18.040 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:18.040 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:19:18.220 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28077 775
17-03-18 01:19:18.370 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:19:18.430 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:19:18.430 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:19:18.430 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:18.430 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:19:18.430 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:19:18.430 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:18.430 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:19:18.430 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:19:18.440 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:19:18.440 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:19:18.560 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:19:18.560 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:19:18.560 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:18.670 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:19:18.670 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:19:18.670 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:18.670 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:18.670 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:19:18.670 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:18.670 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:19:18.750 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:19:18.750 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:19:18.750 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28077 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-18 01:19:18.750 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:19:18.750 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.127717620186302. ------
17-03-18 01:19:18.760 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:19:18.760 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13432 mm
17-03-18 01:19:18.760 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:19:18.760 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:19:18.760 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29343, sync = True, waitForSettling = False)
17-03-18 01:19:18.760 -07 000000625 INF: Z Motor: Moving to -0.134324 mm, started at -0.127718 mm, distance = -6.61 um
17-03-18 01:19:18.760 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:19:18.760 -07 000000618 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 01:19:18.770 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:18.770 -07 000000625 INF: FPGA: Xmit ZDACW 29343\n [Z Motor]
17-03-18 01:19:18.770 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:19:18.780 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:18.780 -07 000000625 INF: FPGA: 'ZDACW 29343' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:19:18.780 -07 000000424 INF: FPGA: Recv YRDPOS 148173
17-03-18 01:19:18.790 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:19:18.790 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:19:18.790 -07 000000618 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:18.790 -07 000000618 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:19:18.790 -07 000000618 INF: Y Motor: Moving 1348 steps-27
17-03-18 01:19:18.800 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:19:18.800 -07 000000626 INF: FPGA: Recv ZDACR 29343
17-03-18 01:19:18.810 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:19:18.810 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:19:18.810 -07 000000625 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:19:18.990 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:19:18.990 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:19:19.070 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:19:19.070 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:19:19.070 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:19.070 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:19:19.070 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:19:19.070 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:19.070 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:19.070 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-18 01:19:19.080 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:19.080 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:19:19.180 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 01:19:19.180 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 389 ms overall
17-03-18 01:19:19.230 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:19.230 -07 000000487 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:19:19.240 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:19:19.240 -07 000000618 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:19.240 -07 000000618 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 01:19:19.240 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.843 mm, average velocity = 2.162 mm/sec
17-03-18 01:19:20.190 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:20.190 -07 000000626 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:19:20.200 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:20.200 -07 000000618 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:20.220 -07 000000618 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:19:20.220 -07 000000618 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:19:20.220 -07 000000618 INF: Y Motor: Moved to 73.1758 after 1462 ms (table move)
17-03-18 01:19:20.220 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134324 mm (DAC = 29343)
17-03-18 01:19:20.220 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:20.230 -07 000000606 INF: FPGA: Recv ZSGSRD 30195
17-03-18 01:19:20.240 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:20.240 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:20.240 -07 000000618 INF: FPGA: Recv ZSGSRD 30191
17-03-18 01:19:20.250 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:20.250 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:20.250 -07 000000606 INF: FPGA: Recv ZSGSRD 30198
17-03-18 01:19:20.260 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:20.260 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:20.260 -07 000000618 INF: FPGA: Recv ZSGSRD 30204
17-03-18 01:19:20.270 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:20.270 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:20.270 -07 000000626 INF: FPGA: Recv ZSGSRD 30198
17-03-18 01:19:20.280 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:20.280 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:20.280 -07 000000479 INF: FPGA: Recv ZSGSRD 30195
17-03-18 01:19:20.290 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:20.290 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:20.290 -07 000000502 INF: FPGA: Recv ZSGSRD 30201
17-03-18 01:19:20.300 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:20.300 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:20.300 -07 000000625 INF: FPGA: Recv ZSGSRD 30192
17-03-18 01:19:20.310 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:20.310 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:20.310 -07 000000424 INF: FPGA: Recv ZSGSRD 30197
17-03-18 01:19:20.320 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:20.320 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:20.320 -07 000000625 INF: FPGA: Recv ZSGSRD 30197
17-03-18 01:19:20.330 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:20.330 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:20.330 -07 000000424 INF: FPGA: Recv ZPIEZORD 25945
17-03-18 01:19:20.340 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:20.340 -07 000000480 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.477 V. Piezo Error = -9.3 V.
17-03-18 01:19:20.340 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30197 (-133.5 uncal um), Error = 0.8 uncal um, Median = 30197 (-133.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30191 (-133.5 uncal um), Max = 30204 (-133.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:19:20.340 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30197, posNoise = 7, negNoise = 6
17-03-18 01:19:20.340 -07 000000480 INF: Z Motor: After move to -0.134324, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:20.340 -07 000000480 INF: Z Motor: Settle wait time = 1465 ms, measure time = 111 ms (allowed 150 ms), total time = 1576 ms
17-03-18 01:19:20.340 -07 000000480 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:19:20.380 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 01:19:20.380 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:19:20.380 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:20.380 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:20.380 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:20.380 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:20.380 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:19:20.380 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:20.380 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:19:20.380 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:19:20.390 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:19:20.390 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:19:20.400 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:19:20.400 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:19:20.400 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:19:20.450 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 01:19:20.750 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 01:19:20.750 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 01:19:20.750 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:19:20.750 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:19:20.790 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:19:20.790 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 01:19:20.790 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:19:20.880 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:19:20.880 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:20.880 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:19:20.880 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:19:20.890 -07 000000487 INF: Autofocus start
17-03-18 01:19:20.890 -07 000000487 INF: MeasureProfile start
17-03-18 01:19:20.890 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:19:20.890 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:19:20.900 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:19:20.900 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:19:20.900 -07 000000487 INF: MeasureProfile done
17-03-18 01:19:20.900 -07 000000487 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:19:20.900 -07 000000487 INF: Autofocus finished
17-03-18 01:19:21.100 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:19:21.100 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:19:21.110 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.134315286055891. ----------
17-03-18 01:19:21.110 -07 000000610 INF: Cycle	85	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:19:21.110 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27850, sync = True, waitForSettling = True)
17-03-18 01:19:21.110 -07 000000610 INF: Z Motor: Moving to -0.127489 mm, started at -0.134315 mm, distance = 6.83 um
17-03-18 01:19:21.110 -07 000000610 INF: FPGA: Xmit ZDACW 27850\n [Z Motor]
17-03-18 01:19:21.110 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 01:19:21.120 -07 000000610 INF: FPGA: 'ZDACW 27850' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:19:21.120 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:19:21.120 -07 000000625 INF: FPGA: Recv ZDACR 27850
17-03-18 01:19:21.130 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:21.130 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:19:21.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:21.280 -07 000000626 INF: FPGA: Recv ZSGSRD 29140
17-03-18 01:19:21.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:21.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:21.290 -07 000000474 INF: FPGA: Recv ZSGSRD 29146
17-03-18 01:19:21.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:21.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:21.300 -07 000000606 INF: FPGA: Recv ZSGSRD 29131
17-03-18 01:19:21.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:21.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:21.310 -07 000000487 INF: FPGA: Recv ZSGSRD 29133
17-03-18 01:19:21.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:21.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:21.320 -07 000000424 INF: FPGA: Recv ZSGSRD 29142
17-03-18 01:19:21.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:21.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:21.330 -07 000000474 INF: FPGA: Recv ZSGSRD 29134
17-03-18 01:19:21.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:21.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:21.340 -07 000000618 INF: FPGA: Recv ZSGSRD 29132
17-03-18 01:19:21.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:21.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:21.350 -07 000000487 INF: FPGA: Recv ZSGSRD 29131
17-03-18 01:19:21.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:21.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:21.360 -07 000000424 INF: FPGA: Recv ZSGSRD 29139
17-03-18 01:19:21.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:21.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:21.370 -07 000000474 INF: FPGA: Recv ZSGSRD 29135
17-03-18 01:19:21.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:21.380 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:21.380 -07 000000618 INF: FPGA: Recv ZPIEZORD 24533
17-03-18 01:19:21.390 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:21.390 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.250 V. Piezo Error = -10.1 V.
17-03-18 01:19:21.390 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29136 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29134 (-126.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29131 (-126.7 uncal um), Max = 29146 (-126.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:19:21.390 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29136, posNoise = 10, negNoise = 5
17-03-18 01:19:21.390 -07 000000610 INF: Z Motor: After move to -0.127489, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:21.390 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:19:21.390 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:21.390 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:21.390 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:21.390 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:21.390 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:19:21.390 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:21.390 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:19:21.390 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:19:21.390 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:19:21.390 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:19:21.390 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:19:21.390 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:19:21.400 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:19:21.400 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:19:21.400 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:19:21.400 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:19:21.410 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:19:21.410 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:19:21.410 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:19:21.410 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:19:21.410 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28027 150\n [Camera]
17-03-18 01:19:21.610 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:19:21.710 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 3.973092,
17-03-18 01:19:22.000 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:19:22.000 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:19:22.000 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:22.000 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:19:22.000 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:19:22.000 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:22.010 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:22.010 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:19:22.010 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:22.010 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:19:22.190 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28027 775
17-03-18 01:19:22.250 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:19:22.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:19:22.340 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:19:22.400 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:19:22.400 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:19:22.400 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:22.400 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:19:22.400 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:19:22.400 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:22.400 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:22.400 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:19:22.400 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:22.410 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 01:19:22.530 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:19:22.530 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:19:22.530 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:22.640 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:19:22.640 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:19:22.640 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:22.650 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:22.650 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:22.650 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:19:22.650 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:19:22.720 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:19:22.720 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:19:22.720 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28027 150' command took 2 ms to send, 1308 ms to get response, and 1313 ms overall
17-03-18 01:19:22.730 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:19:22.730 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.127499196973482. ------
17-03-18 01:19:22.730 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:19:22.730 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13380 mm
17-03-18 01:19:22.730 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:19:22.730 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:19:22.730 -07 000000585 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 01:19:22.730 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29228, sync = True, waitForSettling = False)
17-03-18 01:19:22.730 -07 000000461 INF: Z Motor: Moving to -0.133797 mm, started at -0.127499 mm, distance = -6.30 um
17-03-18 01:19:22.730 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:19:22.740 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:19:22.740 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:22.740 -07 000000424 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:19:22.750 -07 000000461 INF: FPGA: Xmit ZDACW 29228\n [Z Motor]
17-03-18 01:19:22.750 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:19:22.750 -07 000000585 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:22.750 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 01:19:22.750 -07 000000585 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:19:22.750 -07 000000585 INF: Y Motor: Moving 1354 steps-34
17-03-18 01:19:22.760 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:19:22.760 -07 000000461 INF: FPGA: 'ZDACW 29228' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:19:22.770 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:19:22.780 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:19:22.780 -07 000000625 INF: FPGA: Recv ZDACR 29228
17-03-18 01:19:22.790 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:19:22.790 -07 000000461 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 01:19:22.960 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:19:22.960 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:19:23.040 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:19:23.040 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:19:23.040 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:23.040 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:19:23.040 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:19:23.040 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:23.050 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:23.050 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:23.050 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 01:19:23.060 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:19:23.140 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 01:19:23.140 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 01:19:23.180 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:23.180 -07 000000467 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:19:23.190 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:19:23.190 -07 000000585 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:23.190 -07 000000585 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:19:23.190 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.847 mm, average velocity = 2.166 mm/sec
17-03-18 01:19:24.140 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:24.140 -07 000000618 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:19:24.150 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:24.150 -07 000000585 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:24.170 -07 000000585 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:19:24.170 -07 000000585 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:19:24.170 -07 000000585 INF: Y Motor: Moved to 74.0083 after 1433 ms (table move)
17-03-18 01:19:24.170 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133797 mm (DAC = 29228)
17-03-18 01:19:24.170 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:24.170 -07 000000501 INF: FPGA: Recv ZSGSRD 30117
17-03-18 01:19:24.180 -07 000000606 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:19:24.180 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:24.180 -07 000000467 INF: FPGA: Recv ZSGSRD 30113
17-03-18 01:19:24.190 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:24.190 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:24.190 -07 000000501 INF: FPGA: Recv ZSGSRD 30112
17-03-18 01:19:24.200 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:24.200 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:24.200 -07 000000487 INF: FPGA: Recv ZSGSRD 30120
17-03-18 01:19:24.210 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:24.210 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:24.210 -07 000000618 INF: FPGA: Recv ZSGSRD 30115
17-03-18 01:19:24.220 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:24.220 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:24.220 -07 000000461 INF: FPGA: Recv ZSGSRD 30120
17-03-18 01:19:24.230 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:24.230 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:24.230 -07 000000625 INF: FPGA: Recv ZSGSRD 30122
17-03-18 01:19:24.240 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:24.240 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:24.240 -07 000000461 INF: FPGA: Recv ZSGSRD 30121
17-03-18 01:19:24.250 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:24.250 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:24.250 -07 000000625 INF: FPGA: Recv ZSGSRD 30117
17-03-18 01:19:24.260 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:24.260 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:24.260 -07 000000461 INF: FPGA: Recv ZSGSRD 30112
17-03-18 01:19:24.270 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:24.270 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:24.270 -07 000000625 INF: FPGA: Recv ZPIEZORD 25821
17-03-18 01:19:24.280 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:24.280 -07 000000606 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.460 V. Piezo Error = -9.4 V.
17-03-18 01:19:24.280 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.8 um, Read 10 ADC samples: Avg = 30117 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30117 (-133.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30112 (-133.0 uncal um), Max = 30122 (-133.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:19:24.280 -07 000000606 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30117, posNoise = 5, negNoise = 5
17-03-18 01:19:24.280 -07 000000606 INF: Z Motor: After move to -0.133797, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:24.280 -07 000000606 INF: Z Motor: Settle wait time = 1436 ms, measure time = 107 ms (allowed 150 ms), total time = 1543 ms
17-03-18 01:19:24.280 -07 000000606 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:19:24.330 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 01:19:24.330 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:19:24.330 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:24.330 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:24.330 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:24.330 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:24.330 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:19:24.330 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:24.330 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:19:24.330 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:19:24.340 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:19:24.340 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:19:24.350 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:19:24.350 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:19:24.350 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:19:24.400 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:19:24.700 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:19:24.700 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:19:24.700 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:19:24.700 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:19:24.740 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:19:24.740 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 01:19:24.740 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 01:19:24.830 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:19:24.830 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:24.830 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:19:24.830 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:19:24.840 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:19:24.840 -07 000000479 INF: Autofocus start
17-03-18 01:19:24.840 -07 000000479 INF: MeasureProfile start
17-03-18 01:19:24.840 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:19:24.850 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:19:24.850 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:19:24.850 -07 000000479 INF: MeasureProfile done
17-03-18 01:19:24.850 -07 000000479 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:19:24.850 -07 000000479 INF: Autofocus finished
17-03-18 01:19:25.050 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:19:25.050 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 01:19:25.050 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.13380134908455. ----------
17-03-18 01:19:25.060 -07 000000610 INF: Cycle	85	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:19:25.060 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27752, sync = True, waitForSettling = True)
17-03-18 01:19:25.060 -07 000000610 INF: Z Motor: Moving to -0.127041 mm, started at -0.133801 mm, distance = 6.76 um
17-03-18 01:19:25.060 -07 000000610 INF: FPGA: Xmit ZDACW 27752\n [Z Motor]
17-03-18 01:19:25.060 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:19:25.070 -07 000000610 INF: FPGA: 'ZDACW 27752' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:19:25.070 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:19:25.070 -07 000000480 INF: FPGA: Recv ZDACR 27752
17-03-18 01:19:25.080 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:25.080 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:19:25.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:25.230 -07 000000502 INF: FPGA: Recv ZSGSRD 29067
17-03-18 01:19:25.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:25.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:25.240 -07 000000487 INF: FPGA: Recv ZSGSRD 29064
17-03-18 01:19:25.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:25.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:25.250 -07 000000424 INF: FPGA: Recv ZSGSRD 29064
17-03-18 01:19:25.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:25.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:25.260 -07 000000467 INF: FPGA: Recv ZSGSRD 29065
17-03-18 01:19:25.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:25.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:25.270 -07 000000502 INF: FPGA: Recv ZSGSRD 29069
17-03-18 01:19:25.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:25.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:25.280 -07 000000501 INF: FPGA: Recv ZSGSRD 29063
17-03-18 01:19:25.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:25.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:25.290 -07 000000606 INF: FPGA: Recv ZSGSRD 29068
17-03-18 01:19:25.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:25.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:25.300 -07 000000467 INF: FPGA: Recv ZSGSRD 29067
17-03-18 01:19:25.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:25.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:25.310 -07 000000487 INF: FPGA: Recv ZSGSRD 29068
17-03-18 01:19:25.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:25.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:25.320 -07 000000502 INF: FPGA: Recv ZSGSRD 29062
17-03-18 01:19:25.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:25.330 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:25.330 -07 000000606 INF: FPGA: Recv ZPIEZORD 24457
17-03-18 01:19:25.340 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:25.340 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.235 V. Piezo Error = -10.1 V.
17-03-18 01:19:25.340 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.0 um, Read 10 ADC samples: Avg = 29066 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29066 (-126.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29062 (-126.3 uncal um), Max = 29069 (-126.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:19:25.340 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29066, posNoise = 3, negNoise = 4
17-03-18 01:19:25.340 -07 000000610 INF: Z Motor: After move to -0.127041, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:25.340 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:19:25.340 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:25.340 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:25.340 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:25.340 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:25.340 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:19:25.340 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:19:25.340 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:19:25.340 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:25.340 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:19:25.340 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:19:25.340 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:19:25.340 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:19:25.350 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:19:25.350 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:19:25.350 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:19:25.350 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:19:25.360 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:19:25.360 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:19:25.360 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:19:25.360 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:19:25.360 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27929 150\n [Camera]
17-03-18 01:19:25.560 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:19:25.950 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 01:19:25.950 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 01:19:25.950 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:25.950 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 01:19:25.950 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 01:19:25.960 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:25.960 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:25.960 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:19:25.960 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:25.960 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:19:26.140 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27929 775
17-03-18 01:19:26.290 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:19:26.340 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:19:26.340 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 01:19:26.340 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:26.450 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 488 ms.
17-03-18 01:19:26.450 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 488 ms.
17-03-18 01:19:26.450 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:26.450 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 111 ms.
17-03-18 01:19:26.450 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:19:26.450 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 498 ms.
17-03-18 01:19:26.460 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-18 01:19:26.480 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:19:26.480 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:19:26.480 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:26.480 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:19:26.480 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:19:26.490 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:26.490 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:19:26.490 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:26.490 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:26.490 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:19:26.670 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:19:26.670 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:19:26.670 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27929 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-18 01:19:26.670 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:19:26.670 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127049502123559. ------
17-03-18 01:19:26.680 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:19:26.680 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13299 mm
17-03-18 01:19:26.680 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:19:26.680 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:19:26.680 -07 000000467 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 01:19:26.680 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29052, sync = True, waitForSettling = False)
17-03-18 01:19:26.680 -07 000000461 INF: Z Motor: Moving to -0.132992 mm, started at -0.127050 mm, distance = -5.94 um
17-03-18 01:19:26.680 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:19:26.690 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:19:26.690 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:26.690 -07 000000474 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:19:26.700 -07 000000461 INF: FPGA: Xmit ZDACW 29052\n [Z Motor]
17-03-18 01:19:26.700 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:19:26.700 -07 000000467 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:26.700 -07 000000467 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:19:26.700 -07 000000467 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:19:26.700 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:19:26.710 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:19:26.710 -07 000000461 INF: FPGA: 'ZDACW 29052' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:19:26.720 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:19:26.730 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:19:26.730 -07 000000585 INF: FPGA: Recv ZDACR 29052
17-03-18 01:19:26.740 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:19:26.740 -07 000000461 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 01:19:26.880 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:19:26.880 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:19:26.880 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:26.890 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:19:26.890 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:19:26.890 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:26.890 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:19:26.890 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:19:26.890 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:19:26.900 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:19:26.910 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:19:26.910 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:19:27.070 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.009895,
17-03-18 01:19:27.100 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:19:27.100 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 01:19:27.120 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:27.130 -07 000000487 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:19:27.130 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:19:27.130 -07 000000467 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:27.130 -07 000000467 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 01:19:27.130 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.116 mm/sec
17-03-18 01:19:27.250 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:19:27.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 84. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:19:28.080 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:28.080 -07 000000618 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:19:28.090 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:28.090 -07 000000467 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:28.110 -07 000000467 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:19:28.110 -07 000000467 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:19:28.110 -07 000000467 INF: Y Motor: Moved to 74.8320 after 1430 ms (table move)
17-03-18 01:19:28.120 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132992 mm (DAC = 29052)
17-03-18 01:19:28.120 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:28.120 -07 000000467 INF: FPGA: Recv ZSGSRD 29998
17-03-18 01:19:28.130 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:19:28.130 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:28.130 -07 000000618 INF: FPGA: Recv ZSGSRD 29991
17-03-18 01:19:28.140 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:28.140 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:28.140 -07 000000467 INF: FPGA: Recv ZSGSRD 29986
17-03-18 01:19:28.150 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:28.150 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:28.150 -07 000000424 INF: FPGA: Recv ZSGSRD 29997
17-03-18 01:19:28.160 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:28.160 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:28.160 -07 000000606 INF: FPGA: Recv ZSGSRD 29988
17-03-18 01:19:28.170 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:28.170 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:28.170 -07 000000461 INF: FPGA: Recv ZSGSRD 29994
17-03-18 01:19:28.180 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:28.180 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:28.180 -07 000000606 INF: FPGA: Recv ZSGSRD 29999
17-03-18 01:19:28.190 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:28.190 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:28.190 -07 000000606 INF: FPGA: Recv ZSGSRD 29993
17-03-18 01:19:28.200 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:28.200 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:28.200 -07 000000618 INF: FPGA: Recv ZSGSRD 29987
17-03-18 01:19:28.210 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:28.210 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:28.210 -07 000000618 INF: FPGA: Recv ZSGSRD 29991
17-03-18 01:19:28.220 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:28.220 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:28.220 -07 000000424 INF: FPGA: Recv ZPIEZORD 25705
17-03-18 01:19:28.230 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:19:28.230 -07 000000480 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.433 V. Piezo Error = -9.4 V.
17-03-18 01:19:28.230 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29992 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29992 (-132.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29986 (-132.2 uncal um), Max = 29999 (-132.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:19:28.230 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29992, posNoise = 7, negNoise = 6
17-03-18 01:19:28.230 -07 000000480 INF: Z Motor: After move to -0.132992, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:28.230 -07 000000480 INF: Z Motor: Settle wait time = 1433 ms, measure time = 110 ms (allowed 150 ms), total time = 1543 ms
17-03-18 01:19:28.230 -07 000000480 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:19:28.270 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-18 01:19:28.270 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:19:28.270 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:28.270 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:28.270 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:28.270 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:28.270 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:19:28.270 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:28.270 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:19:28.270 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:19:28.280 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:19:28.280 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:19:28.280 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:19:28.280 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:19:28.290 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:19:28.330 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:19:28.630 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:19:28.630 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:19:28.630 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:19:28.630 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-18 01:19:28.670 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:19:28.670 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 01:19:28.670 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:19:28.750 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:19:28.750 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:28.750 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:19:28.750 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:19:28.770 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:19:28.770 -07 000000606 INF: Autofocus start
17-03-18 01:19:28.770 -07 000000606 INF: MeasureProfile start
17-03-18 01:19:28.770 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:19:28.780 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:19:28.780 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:19:28.780 -07 000000606 INF: MeasureProfile done
17-03-18 01:19:28.780 -07 000000606 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:19:28.780 -07 000000606 INF: Autofocus finished
17-03-18 01:19:28.980 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:19:28.980 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:19:28.980 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.13299832256683. ----------
17-03-18 01:19:28.980 -07 000000610 INF: Cycle	85	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:19:28.990 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27559, sync = True, waitForSettling = True)
17-03-18 01:19:28.990 -07 000000610 INF: Z Motor: Moving to -0.126157 mm, started at -0.132998 mm, distance = 6.84 um
17-03-18 01:19:28.990 -07 000000610 INF: FPGA: Xmit ZDACW 27559\n [Z Motor]
17-03-18 01:19:28.990 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:19:29.000 -07 000000610 INF: FPGA: 'ZDACW 27559' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:29.000 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:19:29.000 -07 000000618 INF: FPGA: Recv ZDACR 27559
17-03-18 01:19:29.010 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:29.010 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:19:29.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:29.160 -07 000000501 INF: FPGA: Recv ZSGSRD 28926
17-03-18 01:19:29.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:29.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:29.170 -07 000000424 INF: FPGA: Recv ZSGSRD 28930
17-03-18 01:19:29.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:29.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:29.180 -07 000000625 INF: FPGA: Recv ZSGSRD 28928
17-03-18 01:19:29.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:29.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:29.190 -07 000000424 INF: FPGA: Recv ZSGSRD 28928
17-03-18 01:19:29.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:29.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:29.200 -07 000000625 INF: FPGA: Recv ZSGSRD 28928
17-03-18 01:19:29.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:29.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:29.210 -07 000000501 INF: FPGA: Recv ZSGSRD 28929
17-03-18 01:19:29.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:29.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:29.220 -07 000000487 INF: FPGA: Recv ZSGSRD 28928
17-03-18 01:19:29.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:29.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:29.230 -07 000000625 INF: FPGA: Recv ZSGSRD 28932
17-03-18 01:19:29.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:29.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:29.240 -07 000000501 INF: FPGA: Recv ZSGSRD 28922
17-03-18 01:19:29.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:29.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:19:29.250 -07 000000487 INF: FPGA: Recv ZSGSRD 28924
17-03-18 01:19:29.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:29.260 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:19:29.260 -07 000000625 INF: FPGA: Recv ZPIEZORD 24296
17-03-18 01:19:29.270 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:29.270 -07 000000610 INF: Z Motor: Piezo is near 31.9 V (nominally 0 to 100 V), expect near 42.1 V, since DAC is at 4.205 V. Piezo Error = -10.1 V.
17-03-18 01:19:29.270 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.2 um, Read 10 ADC samples: Avg = 28928 (-125.4 uncal um), Error = 0.8 uncal um, Median = 28928 (-125.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28922 (-125.4 uncal um), Max = 28932 (-125.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:19:29.270 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28928, posNoise = 4, negNoise = 6
17-03-18 01:19:29.270 -07 000000610 INF: Z Motor: After move to -0.126157, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:19:29.270 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:19:29.270 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:19:29.270 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:19:29.270 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:19:29.270 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:19:29.270 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:19:29.270 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:19:29.270 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:19:29.270 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:19:29.270 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:19:29.270 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:19:29.270 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:19:29.270 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:19:29.280 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:19:29.280 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:19:29.280 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:19:29.280 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:19:29.290 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 01:19:29.290 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 01:19:29.290 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 01:19:29.290 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 01:19:29.300 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27736 150\n [Camera]
17-03-18 01:19:29.500 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:19:29.890 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:19:29.890 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:19:29.890 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:29.890 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:29.890 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:19:29.890 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:19:29.890 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:19:29.890 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:29.890 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:29.890 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:19:30.080 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27736 775
17-03-18 01:19:30.230 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:19:30.280 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:19:30.280 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:19:30.280 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:30.280 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:19:30.280 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:19:30.290 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:19:30.290 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:19:30.290 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:30.290 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:19:30.300 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:19:30.420 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:19:30.420 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:19:30.420 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:19:30.420 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:19:30.420 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:19:30.420 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:19:30.420 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:19:30.420 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:19:30.420 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:19:30.420 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:19:30.610 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:19:30.610 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:19:30.610 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27736 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:19:30.820 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:19:30.820 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:19:30.820 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:30.830 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:19:30.830 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:19:30.830 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:19:30.830 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 01:19:30.830 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:19:30.830 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:19:30.830 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:19:30.840 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:19:30.870 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 01:19:30.870 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:19:30.910 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 01:19:30.930 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-18 01:19:30.930 -07 000000610 INF: Imaging Cycle 85: ScanTilesCommand Cycle 85 time end. Duration was 161573 ms.
17-03-18 01:19:30.930 -07 000000610 INF: =================== Cycle #85 ===================
17-03-18 01:19:30.930 -07 000000610 INF: ===================  ===================
17-03-18 01:19:30.930 -07 000000424 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:19:30.930 -07 000000626 INF: FPGA: Recv EXLED1ADCR 21
17-03-18 01:19:30.940 -07 000000424 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:19:30.940 -07 000000424 INF: GreenLED: Using Green data: Photodiode ADC 21 --> 0.0 mW (old method), or 1.5 mW (new method). Difference = 1.5 mW
17-03-18 01:19:30.940 -07 000000424 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 85, FrontChillerTemperature: 4.009895, FrontChillerHeatSinkTemperature: 0.701625, AmbientTemperature: 18.68885, FlowCellCompartmentTemperature: 21.99836, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.5855, GreenLEDSensorTemperature: 27.04391, PhotodiodePowerAdcGreen: 21, PhotodiodePowerMwGreen: 1.471122
17-03-18 01:19:31.010 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.