17-03-18 01:19:31.060 -07 000000610 INF: =================== Cycle #86 ===================
17-03-18 01:19:31.060 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 01:19:31.060 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 01:19:31.060 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:31.060 -07 000000480 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:19:31.070 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:19:31.070 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:31.070 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 01:19:31.070 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 01:19:31.070 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 01:19:31.180 -07 000000479 INF: FPGA: Recv YMVTO 154379 878
17-03-18 01:19:31.180 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 118 ms overall
17-03-18 01:19:31.180 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 01:19:31.180 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 01:19:31.190 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 119 ms, distance = 0.549 mm, average velocity = 4.610 mm/sec
17-03-18 01:19:32.250 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:19:32.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1380, R2=1434, Total=2814. Warn if over 250 bubbles per interval.
17-03-18 01:19:32.440 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.0344,
17-03-18 01:19:34.190 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:19:34.190 -07 000000467 INF: FPGA: Recv YRDPOS 154387
17-03-18 01:19:34.200 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:19:34.200 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:19:34.220 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:19:34.220 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 8 counts (0.004 mm)
17-03-18 01:19:34.220 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3156 ms
17-03-18 01:19:34.220 -07 000000610 INF: =================== Cycle #86, Flow Cell Temp 60° ===================
17-03-18 01:19:34.220 -07 000000610 INF: =================== Cycle #86, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 01:19:34.220 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 01:19:34.230 -07 000000467 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:19:34.240 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:19:34.240 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:19:34.240 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-18 01:19:34.250 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:19:34.250 -07 000000610 INF: =================== Cycle #86, Flow Cell Temp 60° ===================
17-03-18 01:19:34.250 -07 000000610 INF: =================== Cycle #86 ===================
17-03-18 01:19:34.250 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:19:34.250 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:19:34.280 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:19:34.280 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 01:19:34.280 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:19:34.580 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:19:34.600 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:19:34.600 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:19:34.650 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:19:34.670 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:19:34.670 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:19:34.770 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3) ===================
17-03-18 01:19:34.770 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:19:34.900 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:19:34.930 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:19:34.930 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:19:34.930 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:19:35.060 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:19:35.100 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:19:37.250 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 01:19:37.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1381, R2=1435, Total=2816. Warn if over 250 bubbles per interval.
17-03-18 01:19:37.810 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.023489,
17-03-18 01:19:38.230 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:19:38.260 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:19:38.680 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:19:38.710 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:19:39.130 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:19:39.160 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:19:39.160 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:19:39.160 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3) ===================
17-03-18 01:19:39.290 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:19:39.320 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:19:39.320 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:19:39.450 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:19:39.480 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:19:39.480 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:19:39.480 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:19:39.610 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:19:39.640 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:19:40.070 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:19:40.100 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:19:40.100 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:19:40.100 -07 000000610 INF: =================== Cycle #86 ===================
17-03-18 01:19:41.320 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 01:19:41.320 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 01:19:41.320 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:19:41.340 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:19:41.340 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 01:19:41.340 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 01:19:41.470 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:19:41.490 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 01:19:41.490 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 01:19:41.540 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:19:41.560 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:19:41.560 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:19:41.660 -07 000000610 INF: =================== Cycle #86, Pumping Reagent CMS (4) ===================
17-03-18 01:19:41.660 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:19:41.660 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:19:41.690 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:19:41.690 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:19:41.690 -07 000000610 INF: =================== Cycle #86, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 01:19:41.820 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:19:41.860 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:19:42.250 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 01:19:42.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1382, R2=1436, Total=2818. Warn if over 250 bubbles per interval.
17-03-18 01:19:43.180 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.99219,
17-03-18 01:19:43.300 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:19:43.330 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:19:43.750 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:19:43.780 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:19:43.780 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:19:43.780 -07 000000610 INF: =================== Cycle #86, Pumping Reagent CMS (4) ===================
17-03-18 01:19:43.910 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:19:43.940 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:19:43.940 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:19:44.070 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:19:44.100 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:19:44.100 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:19:44.100 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:19:44.230 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:19:44.260 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:19:44.690 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:19:44.720 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:19:44.720 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:19:44.720 -07 000000610 INF: =================== Cycle #86 ===================
17-03-18 01:19:45.940 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:19:45.940 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:19:45.940 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:19:45.960 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:19:45.960 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 01:19:45.960 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 01:19:46.110 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:19:46.130 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 01:19:46.130 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 01:19:46.180 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:19:46.200 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:19:46.200 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:19:46.300 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3) ===================
17-03-18 01:19:46.300 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:19:46.300 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:19:46.330 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:19:46.330 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:19:46.330 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:19:46.460 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:19:46.500 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:19:47.250 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:19:47.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1382, R2=1436, Total=2818. Warn if over 250 bubbles per interval.
17-03-18 01:19:47.370 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:19:47.400 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:19:47.400 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:19:47.400 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3) ===================
17-03-18 01:19:47.530 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:19:47.560 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:19:47.560 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:19:47.690 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:19:47.720 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:19:47.720 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:19:47.720 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:19:47.850 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:19:47.880 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:19:48.310 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:19:48.340 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:19:48.340 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:19:48.340 -07 000000610 INF: =================== Cycle #86 ===================
17-03-18 01:19:48.340 -07 000000479 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:19:48.340 -07 000000606 INF: WaitCommand(10000) start
17-03-18 01:19:48.340 -07 000000479 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:19:48.550 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.014009,
17-03-18 01:19:49.560 -07 000000479 INF: AsyncDelayTimer waited 1215ms
17-03-18 01:19:49.560 -07 000000479 INF: LanePump: Xmit /1?\r
17-03-18 01:19:49.590 -07 000000479 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:19:49.590 -07 000000479 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:19:49.720 -07 000000479 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:19:49.760 -07 000000479 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:19:51.290 -07 000000479 INF: LanePump: Xmit /1Q\r
17-03-18 01:19:51.320 -07 000000479 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:19:51.740 -07 000000479 INF: LanePump: Xmit /1Q\r
17-03-18 01:19:51.770 -07 000000479 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:19:51.770 -07 000000479 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:19:51.770 -07 000000479 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:19:51.770 -07 000000479 INF: ===================  ===================
17-03-18 01:19:52.250 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:19:52.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1382, R2=1436, Total=2818. Warn if over 250 bubbles per interval.
17-03-18 01:19:53.920 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.015368,
17-03-18 01:19:57.250 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:19:57.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1382, R2=1436, Total=2818. Warn if over 250 bubbles per interval.
17-03-18 01:19:58.350 -07 000000606 INF: WaitCommand(10000) end
17-03-18 01:19:58.350 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3) ===================
17-03-18 01:19:58.350 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 01:19:58.350 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:19:58.390 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:19:58.390 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:19:58.390 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:19:58.520 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 01:19:58.560 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:19:59.290 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.997626,
17-03-18 01:20:02.250 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:20:02.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1382, R2=1436, Total=2818. Warn if over 250 bubbles per interval.
17-03-18 01:20:04.660 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.023489,
17-03-18 01:20:04.690 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:20:04.720 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:20:05.140 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:20:05.170 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:20:05.590 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:20:05.620 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:20:06.040 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:20:06.070 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:20:06.490 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:20:06.520 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:20:06.520 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 01:20:06.520 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3) ===================
17-03-18 01:20:06.650 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:20:06.680 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:20:06.680 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:20:06.810 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:20:06.840 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:20:06.840 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:20:06.840 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:20:06.970 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:20:07.000 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:20:07.250 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:20:07.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1382, R2=1436, Total=2818. Warn if over 250 bubbles per interval.
17-03-18 01:20:07.430 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:20:07.460 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:20:07.460 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:20:07.460 -07 000000610 INF: =================== Cycle #86 ===================
17-03-18 01:20:08.680 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:20:08.680 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 01:20:08.680 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:20:08.700 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:20:08.700 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 01:20:08.700 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 01:20:08.910 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:20:08.930 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 01:20:08.930 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 01:20:08.980 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:20:09.000 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:20:09.000 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:20:09.100 -07 000000610 INF: =================== Cycle #86, Pumping Reagent IMT (1) ===================
17-03-18 01:20:09.100 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:20:09.100 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:20:09.130 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:20:09.130 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:20:09.130 -07 000000610 INF: =================== Cycle #86, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 01:20:09.260 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:20:09.300 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:20:10.030 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.003063,
17-03-18 01:20:10.740 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:20:11.230 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:20:11.650 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:20:11.680 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:20:11.680 -07 000000610 INF: LanePump: Waited 2379 ms for pump motion to complete
17-03-18 01:20:11.680 -07 000000610 INF: =================== Cycle #86, Pumping Reagent IMT (1) ===================
17-03-18 01:20:11.810 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:20:11.840 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:20:11.840 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:20:11.970 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:20:12.000 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:20:12.000 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:20:12.000 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:20:12.130 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:20:12.160 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:20:12.250 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 01:20:12.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1436, Total=2819. Warn if over 250 bubbles per interval.
17-03-18 01:20:12.590 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:20:12.620 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:20:12.620 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:20:12.620 -07 000000610 INF: =================== Cycle #86 ===================
17-03-18 01:20:13.840 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:20:13.840 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:20:13.840 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:20:13.860 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:20:13.860 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 01:20:13.860 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:20:14.090 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:20:14.110 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 01:20:14.110 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 01:20:14.160 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:20:14.180 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:20:14.180 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:20:14.280 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3) ===================
17-03-18 01:20:14.280 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:20:14.280 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:20:14.320 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:20:14.320 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:20:14.320 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:20:14.450 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:20:14.490 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:20:15.360 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:20:15.390 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:20:15.390 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 01:20:15.390 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3) ===================
17-03-18 01:20:15.400 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.979922,
17-03-18 01:20:15.520 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:20:15.550 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:20:15.550 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:20:15.680 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:20:15.710 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:20:15.710 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:20:15.710 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:20:15.840 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:20:15.870 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:20:16.300 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:20:16.330 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:20:16.330 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:20:16.330 -07 000000610 INF: =================== Cycle #86 ===================
17-03-18 01:20:16.330 -07 000000610 INF: =================== Cycle #86, Flow Cell Temp 65° ===================
17-03-18 01:20:16.330 -07 000000610 INF: =================== Cycle #86, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 01:20:16.580 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:20:16.580 -07 000000585 INF: FPGA: Recv TEC2EN 
17-03-18 01:20:16.590 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:20:16.590 -07 000000610 INF: =================== Cycle #86, Flow Cell Temp 65° ===================
17-03-18 01:20:16.590 -07 000000610 INF: =================== Cycle #86 ===================
17-03-18 01:20:16.590 -07 000000610 INF: WaitCommand(30000) start
17-03-18 01:20:17.250 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 01:20:17.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:20:20.760 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.970374,
17-03-18 01:20:22.250 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:20:22.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:20:26.120 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.993549,
17-03-18 01:20:27.250 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:20:27.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:20:31.480 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.988112,
17-03-18 01:20:32.250 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:20:32.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:20:36.840 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.994908,
17-03-18 01:20:37.250 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:20:37.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:20:42.200 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.000345,
17-03-18 01:20:42.250 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:20:42.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:20:46.600 -07 000000610 INF: WaitCommand(30000) end
17-03-18 01:20:46.600 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3) ===================
17-03-18 01:20:46.600 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 01:20:46.600 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:20:46.640 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:20:46.640 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:20:46.640 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:20:46.770 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 01:20:46.810 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:20:47.250 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:20:47.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:20:47.350 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:20:47.380 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:20:47.380 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 01:20:47.380 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3) ===================
17-03-18 01:20:47.510 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:20:47.540 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:20:47.540 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:20:47.560 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.003063,
17-03-18 01:20:47.670 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:20:47.700 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:20:47.700 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:20:47.700 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:20:47.830 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:20:47.860 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:20:48.290 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:20:48.320 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:20:48.320 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:20:48.320 -07 000000610 INF: =================== Cycle #86 ===================
17-03-18 01:20:48.320 -07 000000576 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:20:48.320 -07 000000467 INF: WaitCommand(30000) start
17-03-18 01:20:48.320 -07 000000576 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:20:49.540 -07 000000576 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:20:49.540 -07 000000576 INF: LanePump: Xmit /1?\r
17-03-18 01:20:49.570 -07 000000576 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:20:49.570 -07 000000576 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:20:49.700 -07 000000576 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:20:49.740 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:20:52.080 -07 000000576 INF: LanePump: Xmit /1Q\r
17-03-18 01:20:52.110 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:20:52.250 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:20:52.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:20:52.530 -07 000000576 INF: LanePump: Xmit /1Q\r
17-03-18 01:20:52.560 -07 000000576 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:20:52.560 -07 000000576 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 01:20:52.560 -07 000000576 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:20:52.560 -07 000000576 INF: ===================  ===================
17-03-18 01:20:52.920 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.999021,
17-03-18 01:20:57.250 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:20:57.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:20:58.280 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.990831,
17-03-18 01:21:02.260 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:21:02.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:21:03.640 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.033041,
17-03-18 01:21:07.260 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:21:07.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:21:09.000 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.000345,
17-03-18 01:21:12.250 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:21:12.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:21:14.360 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.979922,
17-03-18 01:21:17.250 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:21:17.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:21:18.330 -07 000000467 INF: WaitCommand(30000) end
17-03-18 01:21:18.330 -07 000000610 INF: =================== Cycle #86, Flow Cell Temp 22° ===================
17-03-18 01:21:18.330 -07 000000610 INF: =================== Cycle #86, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 01:21:18.330 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 01:21:18.340 -07 000000501 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:21:18.340 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:21:18.340 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:21:18.340 -07 000000479 INF: FPGA: Recv TEC2EN 
17-03-18 01:21:18.350 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:21:18.350 -07 000000610 INF: =================== Cycle #86, Flow Cell Temp 22° ===================
17-03-18 01:21:18.350 -07 000000610 INF: =================== Cycle #86 ===================
17-03-18 01:21:18.350 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3) ===================
17-03-18 01:21:18.350 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:21:18.350 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:21:18.390 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:21:18.390 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:21:18.390 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:21:18.520 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:21:18.560 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:21:19.720 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.979922,
17-03-18 01:21:21.690 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:21:21.720 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:21:22.140 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:21:22.170 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:21:22.250 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:21:22.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:21:22.590 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:21:22.620 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:21:22.620 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:21:22.620 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3) ===================
17-03-18 01:21:22.750 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:21:22.780 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:21:22.780 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:21:22.910 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:21:22.940 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:21:22.940 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:21:22.940 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:21:23.070 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:21:23.100 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:21:23.530 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:21:23.560 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:21:23.560 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:21:23.560 -07 000000610 INF: =================== Cycle #86 ===================
17-03-18 01:21:24.780 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:21:24.780 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 01:21:24.780 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:21:24.800 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:21:24.800 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 01:21:24.800 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 01:21:24.950 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:21:24.970 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:21:24.970 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:21:25.020 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:21:25.040 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:21:25.040 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:21:25.080 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.978563,
17-03-18 01:21:25.140 -07 000000610 INF: =================== Cycle #86, Pumping Reagent USM (2) ===================
17-03-18 01:21:25.140 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:21:25.140 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:21:25.170 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:21:25.170 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:21:25.170 -07 000000610 INF: =================== Cycle #86, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 01:21:25.300 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:21:25.340 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:21:26.780 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:21:26.810 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:21:27.230 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:21:27.250 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:21:27.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:21:27.260 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:21:27.260 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:21:27.260 -07 000000610 INF: =================== Cycle #86, Pumping Reagent USM (2) ===================
17-03-18 01:21:27.390 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:21:27.420 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:21:27.420 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:21:27.550 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:21:27.580 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:21:27.580 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:21:27.580 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:21:27.710 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:21:27.740 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:21:28.170 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:21:28.200 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:21:28.200 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:21:28.200 -07 000000610 INF: =================== Cycle #86 ===================
17-03-18 01:21:29.420 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:21:29.420 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:21:29.420 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:21:29.440 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:21:29.440 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 01:21:29.440 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:21:29.590 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:21:29.610 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:21:29.610 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:21:29.660 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:21:29.680 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:21:29.680 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:21:29.780 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3) ===================
17-03-18 01:21:29.780 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:21:29.780 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:21:29.810 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:21:29.810 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:21:29.810 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:21:29.940 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:21:29.980 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:21:30.440 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.003063,
17-03-18 01:21:30.850 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:21:30.880 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:21:30.880 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:21:30.880 -07 000000610 INF: =================== Cycle #86, Pumping Reagent PR2 (3) ===================
17-03-18 01:21:31.010 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:21:31.040 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:21:31.040 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:21:31.170 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:21:31.200 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:21:31.200 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:21:31.200 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:21:31.330 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:21:31.360 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:21:31.790 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:21:31.820 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:21:31.820 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:21:31.820 -07 000000610 INF: =================== Cycle #86 ===================
17-03-18 01:21:31.820 -07 000000467 INF: WaitCommand(10000) start
17-03-18 01:21:31.820 -07 000000591 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:21:31.820 -07 000000591 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:21:32.250 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:21:32.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:21:33.040 -07 000000591 INF: AsyncDelayTimer waited 1214ms
17-03-18 01:21:33.040 -07 000000591 INF: LanePump: Xmit /1?\r
17-03-18 01:21:33.070 -07 000000591 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:21:33.070 -07 000000591 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:21:33.200 -07 000000591 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:21:33.240 -07 000000591 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:21:34.770 -07 000000591 INF: LanePump: Xmit /1Q\r
17-03-18 01:21:34.800 -07 000000591 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:21:35.220 -07 000000591 INF: LanePump: Xmit /1Q\r
17-03-18 01:21:35.250 -07 000000591 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:21:35.250 -07 000000591 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:21:35.250 -07 000000591 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:21:35.250 -07 000000591 INF: ===================  ===================
17-03-18 01:21:35.800 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.003063,
17-03-18 01:21:37.250 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:21:37.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1383, R2=1437, Total=2820. Warn if over 250 bubbles per interval.
17-03-18 01:21:41.160 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.997626,
17-03-18 01:21:41.830 -07 000000467 INF: WaitCommand(10000) end
17-03-18 01:21:41.830 -07 000000610 INF: =================== Cycle #86, Imaging ===================
17-03-18 01:21:41.830 -07 000000610 INF: Imaging Cycle 86: ScanTilesCommand Cycle 86 time start.
17-03-18 01:21:41.840 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 01:21:41.840 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:21:41.860 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:21:41.860 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 01:21:41.860 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 01:21:42.160 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:21:42.180 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:21:42.180 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:21:42.230 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:21:42.250 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:21:42.250 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:21:42.250 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:21:42.250 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 01:21:42.250 -07 000000467 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 01:21:42.250 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:21:42.250 -07 000000467 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 01:21:42.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1437, Total=2821. Warn if over 250 bubbles per interval.
17-03-18 01:21:42.250 -07 000000438 INF: FPGA: Recv EXLED1ON 
17-03-18 01:21:42.260 -07 000000467 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:21:42.260 -07 000000467 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 01:21:42.260 -07 000000438 INF: FPGA: Recv EXLED1ADCR 23161
17-03-18 01:21:42.270 -07 000000467 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:42.270 -07 000000467 INF: RedLED: Using Red data: Photodiode ADC 23161 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.8 mW
17-03-18 01:21:42.270 -07 000000467 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 01:21:42.270 -07 000000479 INF: FPGA: Recv EXLED1OFF 
17-03-18 01:21:42.280 -07 000000467 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:42.280 -07 000000467 INF: RedLED: LED was on for 20 ms
17-03-18 01:21:42.280 -07 000000467 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 01:21:42.280 -07 000000467 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 01:21:42.280 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:21:42.280 -07 000000467 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 01:21:42.280 -07 000000561 INF: FPGA: Recv EXLED2ON 
17-03-18 01:21:42.290 -07 000000467 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:21:42.290 -07 000000467 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:21:42.290 -07 000000501 INF: FPGA: Recv EXLED1ADCR 2098
17-03-18 01:21:42.300 -07 000000467 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:42.300 -07 000000467 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-18 01:21:42.300 -07 000000467 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 01:21:42.300 -07 000000479 INF: FPGA: Recv EXLED2OFF 
17-03-18 01:21:42.310 -07 000000467 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:42.310 -07 000000467 INF: GreenLED: LED was on for 19 ms
17-03-18 01:21:42.310 -07 000000467 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 01:21:42.310 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:21:42.310 -07 000000438 INF: FPGA: Recv EMCUR 
17-03-18 01:21:42.320 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:21:42.320 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 01:21:42.820 -07 000000430 INF: FPGA: Recv EMOUT
17-03-18 01:21:42.820 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 01:21:42.820 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 01:21:42.820 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-18 01:21:42.830 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:21:42.830 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:21:42.830 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126162960847996. ------
17-03-18 01:21:42.830 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:21:42.830 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17838 mm
17-03-18 01:21:42.830 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:21:42.830 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:21:42.840 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:21:42.840 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:21:42.840 -07 000000438 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 01:21:42.840 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:21:42.840 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38968, sync = True, waitForSettling = False)
17-03-18 01:21:42.840 -07 000000467 INF: Z Motor: Moving to -0.178384 mm, started at -0.126163 mm, distance = -52.22 um
17-03-18 01:21:42.850 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:21:42.850 -07 000000501 INF: FPGA: Recv YRDPOS 154387
17-03-18 01:21:42.860 -07 000000467 INF: FPGA: Xmit ZDACW 38968\n [Z Motor]
17-03-18 01:21:42.860 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:21:42.860 -07 000000438 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:21:42.860 -07 000000438 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 01:21:42.860 -07 000000438 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:21:42.860 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:21:42.870 -07 000000467 INF: FPGA: 'ZDACW 38968' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:21:42.870 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:21:42.870 -07 000000501 INF: FPGA: Recv ZDACR 38968
17-03-18 01:21:42.880 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:42.880 -07 000000467 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 01:21:42.880 -07 000000438 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:21:43.040 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:21:43.040 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 01:21:44.570 -07 000000430 INF: FPGA: Recv YMVTO 122703 24783
17-03-18 01:21:44.570 -07 000000438 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1680 ms to get response, and 1709 ms overall
17-03-18 01:21:44.570 -07 000000438 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:21:44.570 -07 000000438 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24783 steps (15.489 mm). Slippage = 0.018 mm (0.00%).
17-03-18 01:21:44.570 -07 000000438 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1710 ms, distance = 15.472 mm, average velocity = 9.048 mm/sec
17-03-18 01:21:46.520 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.026244,
17-03-18 01:21:47.250 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:21:47.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1437, Total=2821. Warn if over 250 bubbles per interval.
17-03-18 01:21:47.420 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:21:47.420 -07 000000479 INF: FPGA: Recv YRDPOS 122696
17-03-18 01:21:47.430 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:47.430 -07 000000438 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:21:47.450 -07 000000438 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:21:47.450 -07 000000438 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 01:21:47.450 -07 000000438 INF: Y Motor: Moved to 59.9102 after 4617 ms
17-03-18 01:21:47.460 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178384 mm (DAC = 38968)
17-03-18 01:21:47.460 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:47.460 -07 000000501 INF: FPGA: Recv ZSGSRD 37065
17-03-18 01:21:47.470 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:47.470 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:47.470 -07 000000455 INF: FPGA: Recv ZSGSRD 37060
17-03-18 01:21:47.480 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:47.480 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:47.480 -07 000000591 INF: FPGA: Recv ZSGSRD 37055
17-03-18 01:21:47.490 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:47.490 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:47.490 -07 000000591 INF: FPGA: Recv ZSGSRD 37061
17-03-18 01:21:47.500 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:47.500 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:47.500 -07 000000591 INF: FPGA: Recv ZSGSRD 37061
17-03-18 01:21:47.510 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:47.510 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:47.510 -07 000000591 INF: FPGA: Recv ZSGSRD 37060
17-03-18 01:21:47.520 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:47.530 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:47.530 -07 000000591 INF: FPGA: Recv ZSGSRD 37063
17-03-18 01:21:47.540 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:21:47.540 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:47.540 -07 000000591 INF: FPGA: Recv ZSGSRD 37061
17-03-18 01:21:47.550 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:47.550 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:47.550 -07 000000591 INF: FPGA: Recv ZSGSRD 37059
17-03-18 01:21:47.560 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:47.560 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:47.560 -07 000000591 INF: FPGA: Recv ZSGSRD 37059
17-03-18 01:21:47.570 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:47.570 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:21:47.570 -07 000000591 INF: FPGA: Recv ZPIEZORD 33211
17-03-18 01:21:47.580 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:47.580 -07 000000561 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.946 V. Piezo Error = -8.5 V.
17-03-18 01:21:47.580 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37060 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37060 (-177.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37055 (-177.5 uncal um), Max = 37065 (-177.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:21:47.580 -07 000000561 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37060, posNoise = 5, negNoise = 5
17-03-18 01:21:47.580 -07 000000561 INF: Z Motor: After move to -0.178384, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:21:47.580 -07 000000561 INF: Z Motor: Settle wait time = 4619 ms, measure time = 120 ms (allowed 150 ms), total time = 4739 ms
17-03-18 01:21:47.580 -07 000000561 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-18 01:21:47.610 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4773 ms
17-03-18 01:21:47.610 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:21:47.610 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:21:47.610 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:21:47.610 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:21:47.610 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:21:47.620 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:21:47.620 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:21:47.620 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:21:47.620 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:21:47.640 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 01:21:47.640 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:21:47.640 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 01:21:47.650 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:21:47.660 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:21:47.660 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 01:21:47.660 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:21:47.710 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:21:48.010 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:21:48.010 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:21:48.010 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:21:48.010 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 01:21:48.050 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:21:48.050 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 01:21:48.050 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 387 ms overall
17-03-18 01:21:48.130 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 01:21:48.130 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:21:48.140 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:21:48.140 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 01:21:48.150 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:21:48.150 -07 000000591 INF: Image SNR check: start
17-03-18 01:21:48.170 -07 000000591 INF: Image SNR check: pass  [peak (Max-Min)=139.71]
17-03-18 01:21:48.170 -07 000000591 INF: Autofocus start
17-03-18 01:21:48.170 -07 000000591 INF: MeasureProfile start
17-03-18 01:21:48.180 -07 000000591 INF: MeasureProfile done
17-03-18 01:21:48.180 -07 000000591 INF: X=48  Z correction [um]=0.1739867
17-03-18 01:21:48.180 -07 000000591 INF: Autofocus finished
17-03-18 01:21:48.180 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:21:48.180 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 22 ms to get response, and 29 ms overall
17-03-18 01:21:48.180 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:21:48.380 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:21:48.380 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:21:48.380 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178404653984796. ----------
17-03-18 01:21:48.390 -07 000000610 INF: Cycle	86	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:21:48.390 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37518, sync = True, waitForSettling = True)
17-03-18 01:21:48.390 -07 000000610 INF: Z Motor: Moving to -0.171746 mm, started at -0.178405 mm, distance = 6.66 um
17-03-18 01:21:48.390 -07 000000610 INF: FPGA: Xmit ZDACW 37518\n [Z Motor]
17-03-18 01:21:48.390 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:21:48.400 -07 000000610 INF: FPGA: 'ZDACW 37518' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:21:48.400 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:21:48.400 -07 000000461 INF: FPGA: Recv ZDACR 37518
17-03-18 01:21:48.410 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:48.410 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:21:48.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:48.560 -07 000000576 INF: FPGA: Recv ZSGSRD 36021
17-03-18 01:21:48.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:21:48.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:48.570 -07 000000430 INF: FPGA: Recv ZSGSRD 36031
17-03-18 01:21:48.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:48.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:48.580 -07 000000501 INF: FPGA: Recv ZSGSRD 36028
17-03-18 01:21:48.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:48.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:48.590 -07 000000430 INF: FPGA: Recv ZSGSRD 36027
17-03-18 01:21:48.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:48.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:48.600 -07 000000561 INF: FPGA: Recv ZSGSRD 36028
17-03-18 01:21:48.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:48.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:48.610 -07 000000576 INF: FPGA: Recv ZSGSRD 36022
17-03-18 01:21:48.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:48.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:48.620 -07 000000591 INF: FPGA: Recv ZSGSRD 36032
17-03-18 01:21:48.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:48.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:48.630 -07 000000430 INF: FPGA: Recv ZSGSRD 36016
17-03-18 01:21:48.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:48.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:48.640 -07 000000561 INF: FPGA: Recv ZSGSRD 36027
17-03-18 01:21:48.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:48.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:48.650 -07 000000501 INF: FPGA: Recv ZSGSRD 36026
17-03-18 01:21:48.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:48.660 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:21:48.660 -07 000000591 INF: FPGA: Recv ZPIEZORD 31811
17-03-18 01:21:48.670 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:48.670 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.725 V. Piezo Error = -9.3 V.
17-03-18 01:21:48.670 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36026 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36027 (-170.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36016 (-170.8 uncal um), Max = 36032 (-170.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:21:48.670 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36026, posNoise = 6, negNoise = 10
17-03-18 01:21:48.670 -07 000000610 INF: Z Motor: After move to -0.171746, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:21:48.670 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:21:48.670 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:21:48.670 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:21:48.670 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:21:48.670 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:21:48.670 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:21:48.670 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:21:48.670 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:21:48.670 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:21:48.670 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:21:48.670 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:21:48.670 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:21:48.670 -07 000000430 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:21:48.680 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:21:48.680 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:21:48.690 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:21:48.690 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:21:48.700 -07 000000430 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 01:21:48.700 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:21:48.700 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:21:48.700 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:21:48.710 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:21:48.710 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 01:21:48.710 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37695 150\n [Camera]
17-03-18 01:21:48.910 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:21:49.300 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:21:49.300 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:21:49.300 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:21:49.300 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:21:49.300 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:21:49.310 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:21:49.310 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:21:49.310 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:21:49.310 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:21:49.310 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:21:49.500 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37695 775
17-03-18 01:21:49.640 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:21:49.700 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:21:49.700 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:21:49.700 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:21:49.710 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:21:49.710 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:21:49.710 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:21:49.710 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:21:49.710 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 01:21:49.720 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 01:21:49.720 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 01:21:49.830 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:21:49.830 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:21:49.840 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:21:49.840 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:21:49.840 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:21:49.840 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:21:49.840 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:21:49.840 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:21:49.840 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:21:49.840 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:21:50.020 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:21:50.030 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:21:50.030 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37695 150' command took 2 ms to send, 1300 ms to get response, and 1313 ms overall
17-03-18 01:21:50.030 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:21:50.030 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171762018630215. ------
17-03-18 01:21:50.030 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:21:50.030 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17777 mm
17-03-18 01:21:50.030 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:21:50.030 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38834, sync = True, waitForSettling = False)
17-03-18 01:21:50.030 -07 000000467 INF: Z Motor: Moving to -0.177771 mm, started at -0.171762 mm, distance = -6.01 um
17-03-18 01:21:50.040 -07 000000467 INF: FPGA: Xmit ZDACW 38834\n [Z Motor]
17-03-18 01:21:50.040 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:21:50.040 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:21:50.040 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:21:50.040 -07 000000438 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 01:21:50.040 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 01:21:50.050 -07 000000467 INF: FPGA: 'ZDACW 38834' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:21:50.050 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:21:50.060 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:21:50.060 -07 000000447 INF: FPGA: Recv YRDPOS 122696
17-03-18 01:21:50.070 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:21:50.070 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 01:21:50.070 -07 000000438 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:21:50.070 -07 000000438 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:21:50.070 -07 000000438 INF: Y Motor: Moving 1332 steps2
17-03-18 01:21:50.070 -07 000000447 INF: FPGA: Recv ZDACR 38834
17-03-18 01:21:50.080 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:21:50.080 -07 000000467 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 01:21:50.080 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:21:50.230 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:21:50.230 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:21:50.230 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:21:50.230 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:21:50.230 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:21:50.230 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:21:50.240 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:21:50.240 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:21:50.240 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:21:50.240 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:21:50.250 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:21:50.250 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 01:21:50.450 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:21:50.450 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:21:50.490 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:21:50.490 -07 000000455 INF: FPGA: Recv YRDPOS 124379
17-03-18 01:21:50.500 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:21:50.500 -07 000000438 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:21:50.500 -07 000000438 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 01:21:50.500 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.832 mm, average velocity = 2.145 mm/sec
17-03-18 01:21:51.450 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:21:51.450 -07 000000455 INF: FPGA: Recv YRDPOS 124380
17-03-18 01:21:51.460 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:21:51.460 -07 000000438 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:21:51.480 -07 000000438 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:21:51.480 -07 000000438 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:21:51.480 -07 000000438 INF: Y Motor: Moved to 60.7324 after 1446 ms (table move)
17-03-18 01:21:51.490 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177771 mm (DAC = 38834)
17-03-18 01:21:51.490 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:51.490 -07 000000438 INF: FPGA: Recv ZSGSRD 36961
17-03-18 01:21:51.500 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:21:51.500 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:51.500 -07 000000455 INF: FPGA: Recv ZSGSRD 36958
17-03-18 01:21:51.510 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:51.510 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:51.510 -07 000000455 INF: FPGA: Recv ZSGSRD 36961
17-03-18 01:21:51.520 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:51.520 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:51.520 -07 000000455 INF: FPGA: Recv ZSGSRD 36963
17-03-18 01:21:51.530 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:51.530 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:51.530 -07 000000455 INF: FPGA: Recv ZSGSRD 36968
17-03-18 01:21:51.540 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:51.540 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:51.540 -07 000000455 INF: FPGA: Recv ZSGSRD 36962
17-03-18 01:21:51.550 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:51.550 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:51.550 -07 000000455 INF: FPGA: Recv ZSGSRD 36957
17-03-18 01:21:51.560 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:51.570 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:51.570 -07 000000455 INF: FPGA: Recv ZSGSRD 36970
17-03-18 01:21:51.580 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:21:51.580 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:51.580 -07 000000455 INF: FPGA: Recv ZSGSRD 36962
17-03-18 01:21:51.590 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:51.590 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:51.590 -07 000000455 INF: FPGA: Recv ZSGSRD 36964
17-03-18 01:21:51.600 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:51.600 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:21:51.600 -07 000000455 INF: FPGA: Recv ZPIEZORD 33099
17-03-18 01:21:51.610 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:51.610 -07 000000430 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.926 V. Piezo Error = -8.5 V.
17-03-18 01:21:51.610 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36963 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36962 (-176.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36957 (-176.8 uncal um), Max = 36970 (-176.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:21:51.610 -07 000000430 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36963, posNoise = 7, negNoise = 6
17-03-18 01:21:51.610 -07 000000430 INF: Z Motor: After move to -0.177771, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:21:51.610 -07 000000430 INF: Z Motor: Settle wait time = 1450 ms, measure time = 119 ms (allowed 150 ms), total time = 1569 ms
17-03-18 01:21:51.610 -07 000000430 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-18 01:21:51.650 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 01:21:51.650 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:21:51.650 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:21:51.650 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:21:51.650 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:21:51.650 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:21:51.650 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:21:51.650 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:21:51.650 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:21:51.650 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:21:51.660 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:21:51.660 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:21:51.670 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:21:51.670 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:21:51.670 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:21:51.720 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:21:51.880 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.986717,
17-03-18 01:21:52.020 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:21:52.020 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:21:52.020 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:21:52.020 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2672945024, 0x0, 559484976) start.
17-03-18 01:21:52.060 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:21:52.060 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 01:21:52.060 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 01:21:52.150 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2672945024, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:21:52.150 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:21:52.150 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:21:52.150 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:21:52.160 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:21:52.160 -07 000000430 INF: Autofocus start
17-03-18 01:21:52.160 -07 000000430 INF: MeasureProfile start
17-03-18 01:21:52.160 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:21:52.170 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:21:52.170 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:21:52.170 -07 000000430 INF: MeasureProfile done
17-03-18 01:21:52.170 -07 000000430 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:21:52.170 -07 000000430 INF: Autofocus finished
17-03-18 01:21:52.250 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 01:21:52.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:21:52.370 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:21:52.370 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:21:52.370 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177781505407045. ----------
17-03-18 01:21:52.370 -07 000000610 INF: Cycle	86	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:21:52.380 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37349, sync = True, waitForSettling = True)
17-03-18 01:21:52.380 -07 000000610 INF: Z Motor: Moving to -0.170973 mm, started at -0.177782 mm, distance = 6.81 um
17-03-18 01:21:52.380 -07 000000610 INF: FPGA: Xmit ZDACW 37349\n [Z Motor]
17-03-18 01:21:52.380 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 01:21:52.390 -07 000000610 INF: FPGA: 'ZDACW 37349' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:21:52.390 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:21:52.390 -07 000000438 INF: FPGA: Recv ZDACR 37349
17-03-18 01:21:52.400 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:52.400 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:21:52.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:52.550 -07 000000447 INF: FPGA: Recv ZSGSRD 35907
17-03-18 01:21:52.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:21:52.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:52.560 -07 000000447 INF: FPGA: Recv ZSGSRD 35905
17-03-18 01:21:52.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:52.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:52.570 -07 000000467 INF: FPGA: Recv ZSGSRD 35902
17-03-18 01:21:52.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:52.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:52.580 -07 000000467 INF: FPGA: Recv ZSGSRD 35906
17-03-18 01:21:52.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:52.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:52.590 -07 000000467 INF: FPGA: Recv ZSGSRD 35908
17-03-18 01:21:52.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:52.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:52.600 -07 000000447 INF: FPGA: Recv ZSGSRD 35906
17-03-18 01:21:52.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:52.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:52.610 -07 000000467 INF: FPGA: Recv ZSGSRD 35909
17-03-18 01:21:52.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:52.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:52.620 -07 000000467 INF: FPGA: Recv ZSGSRD 35903
17-03-18 01:21:52.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:52.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:52.630 -07 000000561 INF: FPGA: Recv ZSGSRD 35908
17-03-18 01:21:52.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:52.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:52.640 -07 000000447 INF: FPGA: Recv ZSGSRD 35909
17-03-18 01:21:52.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:52.650 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:21:52.650 -07 000000561 INF: FPGA: Recv ZPIEZORD 31682
17-03-18 01:21:52.660 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:52.660 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -9.3 V.
17-03-18 01:21:52.660 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35906 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35906 (-170.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35902 (-170.1 uncal um), Max = 35909 (-170.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:21:52.660 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35906, posNoise = 3, negNoise = 4
17-03-18 01:21:52.660 -07 000000610 INF: Z Motor: After move to -0.170973, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:21:52.660 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:21:52.660 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:21:52.660 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:21:52.660 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:21:52.660 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:21:52.660 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:21:52.660 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:21:52.660 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:21:52.660 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:21:52.660 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 01:21:52.660 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:21:52.660 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:21:52.660 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:21:52.670 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:21:52.670 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:21:52.670 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:21:52.670 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:21:52.680 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:21:52.680 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 01:21:52.680 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:21:52.680 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:21:52.690 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37525 150\n [Camera]
17-03-18 01:21:52.890 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:21:53.280 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:21:53.280 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:21:53.280 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:21:53.280 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:21:53.280 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:21:53.280 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:21:53.280 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:21:53.280 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:21:53.280 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:21:53.280 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 01:21:53.470 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37525 776
17-03-18 01:21:53.620 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:21:53.670 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:21:53.670 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:21:53.670 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:21:53.670 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:21:53.670 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:21:53.670 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:21:53.680 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:21:53.680 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:21:53.680 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:21:53.680 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:21:53.810 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:21:53.810 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:21:53.810 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:21:53.810 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:21:53.810 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:21:53.810 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:21:53.810 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:21:54.210 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 01:21:54.210 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:21:54.210 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:21:54.220 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:21:54.220 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:21:54.230 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:21:54.230 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:21:54.230 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 01:21:54.640 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 407 ms.
17-03-18 01:21:54.640 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:21:54.640 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:21:54.640 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:21:54.650 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:21:54.650 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:21:54.650 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:21:54.650 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37525 150' command took 2 ms to send, 1959 ms to get response, and 1969 ms overall
17-03-18 01:21:54.660 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:21:54.660 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.170991113173204. ------
17-03-18 01:21:54.660 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:21:55.200 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17771 mm
17-03-18 01:21:55.200 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:21:55.720 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:21:55.720 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1050 ms to get response, and 1056 ms overall
17-03-18 01:21:55.720 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:21:55.720 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:21:55.720 -07 000000591 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 01:21:55.730 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:21:56.720 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38821, sync = True, waitForSettling = False)
17-03-18 01:21:56.720 -07 000000501 INF: Z Motor: Moving to -0.177711 mm, started at -0.170991 mm, distance = -6.72 um
17-03-18 01:21:56.720 -07 000000501 INF: FPGA: Xmit ZDACW 38821\n [Z Motor]
17-03-18 01:21:57.720 -07 000000438 INF: FPGA: Recv YRDPOS 124380
17-03-18 01:21:57.720 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:21:57.720 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:21:57.720 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:21:57.720 -07 000000501 INF: FPGA: 'ZDACW 38821' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 01:21:57.720 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:21:57.720 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:21:57.720 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1980 ms to get response, and 1998 ms overall
17-03-18 01:21:57.720 -07 000000591 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:21:57.720 -07 000000591 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:21:57.720 -07 000000591 INF: Y Motor: Moving 1344 steps-22
17-03-18 01:21:57.720 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1990 ms to get response, and 1999 ms overall
17-03-18 01:21:57.720 -07 000000438 INF: FPGA: Recv ZDACR 38821
17-03-18 01:21:57.730 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:21:57.730 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:21:57.730 -07 000000501 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-18 01:21:58.030 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.981281,
17-03-18 01:21:58.100 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 01:21:58.100 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 01:21:58.150 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:21:58.150 -07 000000438 INF: FPGA: Recv YRDPOS 126081
17-03-18 01:21:58.160 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:58.160 -07 000000591 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:21:58.160 -07 000000591 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:21:58.160 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.177 mm/sec
17-03-18 01:21:59.110 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:21:59.110 -07 000000479 INF: FPGA: Recv YRDPOS 126081
17-03-18 01:21:59.120 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:21:59.120 -07 000000591 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:21:59.140 -07 000000591 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:21:59.140 -07 000000591 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:21:59.140 -07 000000591 INF: Y Motor: Moved to 61.5630 after 3425 ms (table move)
17-03-18 01:21:59.150 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177711 mm (DAC = 38821)
17-03-18 01:21:59.150 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:59.150 -07 000000576 INF: FPGA: Recv ZSGSRD 36954
17-03-18 01:21:59.160 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:59.160 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:59.160 -07 000000430 INF: FPGA: Recv ZSGSRD 36951
17-03-18 01:21:59.170 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:59.170 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:59.170 -07 000000438 INF: FPGA: Recv ZSGSRD 36946
17-03-18 01:21:59.180 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:59.180 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:59.180 -07 000000430 INF: FPGA: Recv ZSGSRD 36956
17-03-18 01:21:59.190 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:59.190 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:59.190 -07 000000576 INF: FPGA: Recv ZSGSRD 36955
17-03-18 01:21:59.200 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:59.200 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:59.200 -07 000000438 INF: FPGA: Recv ZSGSRD 36960
17-03-18 01:21:59.210 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:59.210 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:59.210 -07 000000430 INF: FPGA: Recv ZSGSRD 36955
17-03-18 01:21:59.220 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:59.220 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:59.220 -07 000000479 INF: FPGA: Recv ZSGSRD 36950
17-03-18 01:21:59.230 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:59.230 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:59.230 -07 000000438 INF: FPGA: Recv ZSGSRD 36952
17-03-18 01:21:59.240 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:59.240 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:21:59.240 -07 000000438 INF: FPGA: Recv ZSGSRD 36956
17-03-18 01:21:59.250 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:59.250 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:21:59.250 -07 000000438 INF: FPGA: Recv ZPIEZORD 33090
17-03-18 01:21:59.260 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:21:59.260 -07 000000461 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.924 V. Piezo Error = -8.5 V.
17-03-18 01:21:59.260 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36954 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36954 (-176.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36946 (-176.8 uncal um), Max = 36960 (-176.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:21:59.260 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36954, posNoise = 6, negNoise = 8
17-03-18 01:21:59.260 -07 000000461 INF: Z Motor: After move to -0.177711, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:21:59.260 -07 000000461 INF: Z Motor: Settle wait time = 2429 ms, measure time = 110 ms (allowed 150 ms), total time = 2539 ms
17-03-18 01:21:59.260 -07 000000461 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:21:59.300 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4097 ms
17-03-18 01:21:59.300 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:21:59.300 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:21:59.300 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:21:59.300 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:21:59.300 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:21:59.300 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:21:59.300 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:21:59.300 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:21:59.300 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:21:59.310 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:21:59.310 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:21:59.320 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:21:59.320 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:21:59.320 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:21:59.370 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:21:59.670 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:21:59.670 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:21:59.670 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:21:59.670 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 01:21:59.700 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:21:59.710 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:21:59.710 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:21:59.790 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:21:59.790 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:21:59.790 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:21:59.790 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:21:59.810 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:21:59.810 -07 000000430 INF: Autofocus start
17-03-18 01:21:59.810 -07 000000430 INF: MeasureProfile start
17-03-18 01:21:59.810 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:21:59.820 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:21:59.820 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:21:59.820 -07 000000430 INF: MeasureProfile done
17-03-18 01:21:59.820 -07 000000430 INF: X=-32  Z correction [um]=-0.2344
17-03-18 01:21:59.820 -07 000000430 INF: Autofocus finished
17-03-18 01:22:00.020 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:22:00.020 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:22:00.020 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177723687497769. ----------
17-03-18 01:22:00.030 -07 000000610 INF: Cycle	86	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:22:00.030 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37282, sync = True, waitForSettling = True)
17-03-18 01:22:00.030 -07 000000610 INF: Z Motor: Moving to -0.170666 mm, started at -0.177724 mm, distance = 7.06 um
17-03-18 01:22:00.030 -07 000000610 INF: FPGA: Xmit ZDACW 37282\n [Z Motor]
17-03-18 01:22:00.030 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:22:00.040 -07 000000610 INF: FPGA: 'ZDACW 37282' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:22:00.040 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:00.040 -07 000000479 INF: FPGA: Recv ZDACR 37282
17-03-18 01:22:00.050 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:00.050 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:22:00.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:00.200 -07 000000561 INF: FPGA: Recv ZSGSRD 35856
17-03-18 01:22:00.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:00.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:00.210 -07 000000461 INF: FPGA: Recv ZSGSRD 35854
17-03-18 01:22:00.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:00.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:00.220 -07 000000561 INF: FPGA: Recv ZSGSRD 35857
17-03-18 01:22:00.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:00.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:00.230 -07 000000467 INF: FPGA: Recv ZSGSRD 35856
17-03-18 01:22:00.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:00.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:00.240 -07 000000461 INF: FPGA: Recv ZSGSRD 35858
17-03-18 01:22:00.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:00.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:00.250 -07 000000447 INF: FPGA: Recv ZSGSRD 35860
17-03-18 01:22:00.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:00.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:00.260 -07 000000430 INF: FPGA: Recv ZSGSRD 35861
17-03-18 01:22:00.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:00.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:00.270 -07 000000467 INF: FPGA: Recv ZSGSRD 35857
17-03-18 01:22:00.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:00.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:00.280 -07 000000430 INF: FPGA: Recv ZSGSRD 35853
17-03-18 01:22:00.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:00.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:00.290 -07 000000461 INF: FPGA: Recv ZSGSRD 35857
17-03-18 01:22:00.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:00.300 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:00.300 -07 000000430 INF: FPGA: Recv ZPIEZORD 31636
17-03-18 01:22:00.310 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:00.310 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.689 V. Piezo Error = -9.3 V.
17-03-18 01:22:00.310 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35857 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35857 (-169.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35853 (-169.8 uncal um), Max = 35861 (-169.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:22:00.310 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35857, posNoise = 4, negNoise = 4
17-03-18 01:22:00.310 -07 000000610 INF: Z Motor: After move to -0.170666, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:00.310 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:22:00.310 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:00.310 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:00.310 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:00.310 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:00.310 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:22:00.310 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:00.310 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:22:00.310 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:22:00.310 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:00.310 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:22:00.310 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:22:00.310 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:22:00.310 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:22:00.310 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:22:00.320 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:22:00.320 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:22:00.330 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:22:00.330 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:22:00.330 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:22:00.330 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:22:00.340 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37459 150\n [Camera]
17-03-18 01:22:00.540 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:22:00.930 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:22:00.930 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:22:00.930 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:00.930 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:00.930 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 01:22:00.930 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:22:00.930 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:22:00.930 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:00.930 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:00.930 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 01:22:01.120 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37459 775
17-03-18 01:22:01.270 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 01:22:01.300 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 01:22:01.310 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 01:22:01.310 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:01.310 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 01:22:01.310 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 01:22:01.310 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:01.310 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:22:01.310 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 01:22:01.310 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:22:01.320 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:22:01.460 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:22:01.460 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:22:01.460 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:01.600 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:22:01.600 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:22:01.600 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:01.610 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:01.610 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:22:01.610 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:01.610 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:22:01.650 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:22:01.650 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:22:01.650 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37459 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:22:01.650 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:22:01.650 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.170676326778258. ------
17-03-18 01:22:01.660 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:02.000 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:22:02.000 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:22:02.000 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:02.000 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:22:02.000 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:22:02.000 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:02.010 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:02.010 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:02.010 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 549 ms.
17-03-18 01:22:02.010 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:22:02.020 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17693 mm
17-03-18 01:22:02.020 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:22:02.020 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:02.030 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 360 ms to get response, and 370 ms overall
17-03-18 01:22:02.030 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:22:02.030 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:22:02.030 -07 000000501 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 01:22:02.040 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:02.720 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38651, sync = True, waitForSettling = False)
17-03-18 01:22:02.720 -07 000000479 INF: Z Motor: Moving to -0.176933 mm, started at -0.170676 mm, distance = -6.26 um
17-03-18 01:22:02.720 -07 000000479 INF: FPGA: Xmit ZDACW 38651\n [Z Motor]
17-03-18 01:22:03.720 -07 000000447 INF: FPGA: Recv YRDPOS 126081
17-03-18 01:22:03.720 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:22:03.720 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:22:03.720 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1687 ms to get response, and 1696 ms overall
17-03-18 01:22:03.720 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1677 ms to get response, and 1695 ms overall
17-03-18 01:22:03.720 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 01:22:03.720 -07 000000479 INF: FPGA: 'ZDACW 38651' command took 0 ms to send, 997 ms to get response, and 1006 ms overall
17-03-18 01:22:03.720 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:03.720 -07 000000501 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:03.720 -07 000000501 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:22:03.720 -07 000000501 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:22:03.720 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:22:03.730 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:22:03.730 -07 000000447 INF: FPGA: Recv ZDACR 38651
17-03-18 01:22:03.730 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:22:03.730 -07 000000479 INF: Z Motor: MoveAbsStepped took 1009 ms (did NOT wait for settling yet))
17-03-18 01:22:04.030 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.99219,
17-03-18 01:22:04.100 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 01:22:04.100 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-18 01:22:04.150 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:04.150 -07 000000561 INF: FPGA: Recv YRDPOS 127785
17-03-18 01:22:04.160 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:04.160 -07 000000501 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:04.160 -07 000000501 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 01:22:04.160 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.840 mm, average velocity = 2.215 mm/sec
17-03-18 01:22:05.110 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:05.110 -07 000000467 INF: FPGA: Recv YRDPOS 127785
17-03-18 01:22:05.120 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:05.120 -07 000000501 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:05.140 -07 000000501 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:22:05.140 -07 000000501 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:22:05.140 -07 000000501 INF: Y Motor: Moved to 62.3950 after 3114 ms (table move)
17-03-18 01:22:05.140 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176933 mm (DAC = 38651)
17-03-18 01:22:05.140 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:05.150 -07 000000561 INF: FPGA: Recv ZSGSRD 36844
17-03-18 01:22:05.150 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:22:05.150 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:05.150 -07 000000461 INF: FPGA: Recv ZSGSRD 36833
17-03-18 01:22:05.160 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:22:05.160 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:05.160 -07 000000479 INF: FPGA: Recv ZSGSRD 36830
17-03-18 01:22:05.170 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:05.170 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:05.170 -07 000000561 INF: FPGA: Recv ZSGSRD 36822
17-03-18 01:22:05.180 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:05.180 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:05.180 -07 000000438 INF: FPGA: Recv ZSGSRD 36833
17-03-18 01:22:05.190 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:05.190 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:05.190 -07 000000461 INF: FPGA: Recv ZSGSRD 36834
17-03-18 01:22:05.200 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:05.200 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:05.200 -07 000000438 INF: FPGA: Recv ZSGSRD 36828
17-03-18 01:22:05.210 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:05.210 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:05.210 -07 000000479 INF: FPGA: Recv ZSGSRD 36836
17-03-18 01:22:05.220 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:05.220 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:05.220 -07 000000501 INF: FPGA: Recv ZSGSRD 36835
17-03-18 01:22:05.230 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 11 ms overall
17-03-18 01:22:05.230 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:05.230 -07 000000591 INF: FPGA: Recv ZSGSRD 36832
17-03-18 01:22:05.240 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:05.240 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:05.240 -07 000000461 INF: FPGA: Recv ZPIEZORD 32918
17-03-18 01:22:05.250 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:05.250 -07 000000455 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.898 V. Piezo Error = -8.7 V.
17-03-18 01:22:05.250 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36833 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36833 (-176.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 36822 (-176.0 uncal um), Max = 36844 (-176.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 01:22:05.250 -07 000000455 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36833, posNoise = 11, negNoise = 11
17-03-18 01:22:05.250 -07 000000455 INF: Z Motor: After move to -0.176933, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:05.250 -07 000000455 INF: Z Motor: Settle wait time = 2427 ms, measure time = 102 ms (allowed 150 ms), total time = 2529 ms
17-03-18 01:22:05.250 -07 000000455 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:22:05.300 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3276 ms
17-03-18 01:22:05.300 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:22:05.300 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:05.300 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:05.300 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:05.300 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:05.300 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:22:05.300 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:05.300 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:05.300 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:22:05.310 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:22:05.310 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:22:05.320 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:22:05.320 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 01:22:05.320 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:22:05.360 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:22:05.660 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:22:05.660 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:22:05.660 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:22:05.660 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 01:22:05.700 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:22:05.700 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 01:22:05.700 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:22:05.790 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:22:05.790 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:05.790 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:22:05.790 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:22:05.900 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:05.900 -07 000000438 INF: Autofocus start
17-03-18 01:22:05.900 -07 000000438 INF: MeasureProfile start
17-03-18 01:22:05.900 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:05.910 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:22:05.910 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:22:05.910 -07 000000438 INF: MeasureProfile done
17-03-18 01:22:05.910 -07 000000438 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:22:05.910 -07 000000438 INF: Autofocus finished
17-03-18 01:22:06.110 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:22:06.110 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:22:06.110 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.176946357828616. ----------
17-03-18 01:22:06.110 -07 000000610 INF: Cycle	86	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:22:06.120 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37166, sync = True, waitForSettling = True)
17-03-18 01:22:06.120 -07 000000610 INF: Z Motor: Moving to -0.170135 mm, started at -0.176946 mm, distance = 6.81 um
17-03-18 01:22:06.120 -07 000000610 INF: FPGA: Xmit ZDACW 37166\n [Z Motor]
17-03-18 01:22:06.120 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:22:06.130 -07 000000610 INF: FPGA: 'ZDACW 37166' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:06.130 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:06.130 -07 000000561 INF: FPGA: Recv ZDACR 37166
17-03-18 01:22:06.140 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:06.140 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:22:06.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:06.290 -07 000000591 INF: FPGA: Recv ZSGSRD 35774
17-03-18 01:22:06.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:06.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:06.300 -07 000000561 INF: FPGA: Recv ZSGSRD 35774
17-03-18 01:22:06.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:06.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:06.310 -07 000000591 INF: FPGA: Recv ZSGSRD 35773
17-03-18 01:22:06.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:06.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:06.320 -07 000000591 INF: FPGA: Recv ZSGSRD 35776
17-03-18 01:22:06.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:06.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:06.330 -07 000000561 INF: FPGA: Recv ZSGSRD 35771
17-03-18 01:22:06.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:06.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:06.340 -07 000000561 INF: FPGA: Recv ZSGSRD 35774
17-03-18 01:22:06.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:06.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:06.350 -07 000000438 INF: FPGA: Recv ZSGSRD 35774
17-03-18 01:22:06.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:06.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:06.360 -07 000000438 INF: FPGA: Recv ZSGSRD 35774
17-03-18 01:22:06.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:06.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:06.370 -07 000000455 INF: FPGA: Recv ZSGSRD 35772
17-03-18 01:22:06.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:06.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:06.380 -07 000000438 INF: FPGA: Recv ZSGSRD 35775
17-03-18 01:22:06.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:06.390 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:06.390 -07 000000455 INF: FPGA: Recv ZPIEZORD 31503
17-03-18 01:22:06.400 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:06.400 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.671 V. Piezo Error = -9.4 V.
17-03-18 01:22:06.400 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35774 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35774 (-169.3 uncal um), StdDev = 1 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35771 (-169.2 uncal um), Max = 35776 (-169.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:22:06.400 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35774, posNoise = 2, negNoise = 3
17-03-18 01:22:06.400 -07 000000610 INF: Z Motor: After move to -0.170135, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:06.400 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:22:06.400 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:06.400 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:06.400 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:06.400 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:06.400 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:22:06.400 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:22:06.400 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:22:06.400 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:06.400 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:22:06.400 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:22:06.400 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:06.400 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:22:06.410 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:22:06.410 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:22:06.410 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:22:06.410 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:22:06.420 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:22:06.420 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:22:06.420 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:22:06.420 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:22:06.430 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37342 150\n [Camera]
17-03-18 01:22:06.630 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:22:07.020 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:22:07.020 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:22:07.020 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:07.020 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:22:07.020 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:22:07.020 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:07.130 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:07.130 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-18 01:22:07.130 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:07.130 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:22:07.210 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37342 775
17-03-18 01:22:07.250 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:22:07.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:22:07.360 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:22:07.500 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 01:22:07.500 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 01:22:07.500 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:07.510 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 01:22:07.510 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 01:22:07.510 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:07.510 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:07.510 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 490 ms.
17-03-18 01:22:07.510 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:07.520 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 496 ms.
17-03-18 01:22:07.550 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:22:07.550 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:22:07.550 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:07.550 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:22:07.550 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:22:07.550 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:07.550 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:07.550 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:22:07.560 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:07.560 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) start.
17-03-18 01:22:07.740 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:22:07.740 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:22:07.740 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37342 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-18 01:22:07.740 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:22:07.740 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170143117170491. ------
17-03-18 01:22:07.740 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:07.930 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 01:22:07.930 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 01:22:07.930 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:07.930 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 01:22:07.930 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 01:22:07.930 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:07.940 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:07.940 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:22:07.940 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:22:07.950 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:22:07.950 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17679 mm
17-03-18 01:22:07.950 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:22:07.960 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:07.960 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 210 ms to get response, and 212 ms overall
17-03-18 01:22:07.960 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:22:07.960 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:22:07.960 -07 000000461 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 01:22:07.970 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:08.720 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38620, sync = True, waitForSettling = False)
17-03-18 01:22:08.720 -07 000000590 INF: Z Motor: Moving to -0.176791 mm, started at -0.170143 mm, distance = -6.65 um
17-03-18 01:22:08.720 -07 000000590 INF: FPGA: Xmit ZDACW 38620\n [Z Motor]
17-03-18 01:22:09.720 -07 000000501 INF: FPGA: Recv YRDPOS 127785
17-03-18 01:22:09.720 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:22:09.720 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:22:09.720 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1750 ms to get response, and 1759 ms overall
17-03-18 01:22:09.720 -07 000000590 INF: FPGA: 'ZDACW 38620' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 01:22:09.720 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:09.720 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1740 ms to get response, and 1758 ms overall
17-03-18 01:22:09.720 -07 000000461 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:09.720 -07 000000461 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:22:09.720 -07 000000461 INF: Y Motor: Moving 1340 steps-16
17-03-18 01:22:09.720 -07 000000501 INF: FPGA: Recv ZDACR 38620
17-03-18 01:22:09.730 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:09.730 -07 000000590 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-18 01:22:09.730 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:22:10.030 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.983999,
17-03-18 01:22:10.100 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 01:22:10.100 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 01:22:10.150 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:10.150 -07 000000591 INF: FPGA: Recv YRDPOS 129481
17-03-18 01:22:10.160 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:10.160 -07 000000461 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:10.160 -07 000000461 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:22:10.160 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.170 mm/sec
17-03-18 01:22:11.110 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:11.110 -07 000000447 INF: FPGA: Recv YRDPOS 129481
17-03-18 01:22:11.120 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:11.120 -07 000000461 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:11.140 -07 000000461 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:22:11.140 -07 000000461 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:22:11.140 -07 000000461 INF: Y Motor: Moved to 63.2231 after 3185 ms (table move)
17-03-18 01:22:11.150 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176791 mm (DAC = 38620)
17-03-18 01:22:11.150 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:11.150 -07 000000467 INF: FPGA: Recv ZSGSRD 36808
17-03-18 01:22:11.160 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:11.160 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:11.160 -07 000000591 INF: FPGA: Recv ZSGSRD 36808
17-03-18 01:22:11.170 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:11.170 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:11.170 -07 000000447 INF: FPGA: Recv ZSGSRD 36814
17-03-18 01:22:11.180 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:11.180 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:11.180 -07 000000501 INF: FPGA: Recv ZSGSRD 36808
17-03-18 01:22:11.190 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:11.190 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:11.190 -07 000000461 INF: FPGA: Recv ZSGSRD 36814
17-03-18 01:22:11.200 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:11.200 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:11.200 -07 000000447 INF: FPGA: Recv ZSGSRD 36814
17-03-18 01:22:11.210 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:11.210 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:11.210 -07 000000461 INF: FPGA: Recv ZSGSRD 36804
17-03-18 01:22:11.220 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:11.220 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:11.220 -07 000000576 INF: FPGA: Recv ZSGSRD 36811
17-03-18 01:22:11.230 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:22:11.230 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:11.230 -07 000000467 INF: FPGA: Recv ZSGSRD 36811
17-03-18 01:22:11.240 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:11.240 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:11.240 -07 000000447 INF: FPGA: Recv ZSGSRD 36813
17-03-18 01:22:11.250 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:11.250 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:11.250 -07 000000467 INF: FPGA: Recv ZPIEZORD 32941
17-03-18 01:22:11.260 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:11.260 -07 000000438 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.893 V. Piezo Error = -8.6 V.
17-03-18 01:22:11.260 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36810 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36811 (-175.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36804 (-175.9 uncal um), Max = 36814 (-175.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:22:11.260 -07 000000438 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36810, posNoise = 4, negNoise = 6
17-03-18 01:22:11.260 -07 000000438 INF: Z Motor: After move to -0.176791, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:11.260 -07 000000438 INF: Z Motor: Settle wait time = 2430 ms, measure time = 109 ms (allowed 150 ms), total time = 2539 ms
17-03-18 01:22:11.260 -07 000000438 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:22:11.310 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3356 ms
17-03-18 01:22:11.310 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:22:11.310 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:11.310 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:11.310 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:11.310 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:11.310 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:22:11.310 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:11.310 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:11.310 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:22:11.320 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:22:11.320 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:22:11.330 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:22:11.330 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:22:11.330 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:22:11.380 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 01:22:11.680 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 01:22:11.680 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 01:22:11.680 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:22:11.680 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2640066888, 0x0, 559484976) start.
17-03-18 01:22:11.720 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:22:11.720 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 01:22:11.720 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 01:22:11.810 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2640066888, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:22:11.810 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:11.810 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:22:11.810 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:22:11.820 -07 000000576 INF: Autofocus start
17-03-18 01:22:11.820 -07 000000576 INF: MeasureProfile start
17-03-18 01:22:11.820 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:11.820 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:11.830 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:22:11.830 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:22:11.830 -07 000000576 INF: MeasureProfile done
17-03-18 01:22:11.830 -07 000000576 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:22:11.830 -07 000000576 INF: Autofocus finished
17-03-18 01:22:12.030 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:22:12.030 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:22:12.030 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.176798600949356. ----------
17-03-18 01:22:12.030 -07 000000610 INF: Cycle	86	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:22:12.040 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37117, sync = True, waitForSettling = True)
17-03-18 01:22:12.040 -07 000000610 INF: Z Motor: Moving to -0.169911 mm, started at -0.176799 mm, distance = 6.89 um
17-03-18 01:22:12.040 -07 000000610 INF: FPGA: Xmit ZDACW 37117\n [Z Motor]
17-03-18 01:22:12.040 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:22:12.050 -07 000000610 INF: FPGA: 'ZDACW 37117' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:12.050 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:12.050 -07 000000467 INF: FPGA: Recv ZDACR 37117
17-03-18 01:22:12.060 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:12.060 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:22:12.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:12.210 -07 000000569 INF: FPGA: Recv ZSGSRD 35742
17-03-18 01:22:12.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:12.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:12.220 -07 000000590 INF: FPGA: Recv ZSGSRD 35740
17-03-18 01:22:12.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:12.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:12.230 -07 000000501 INF: FPGA: Recv ZSGSRD 35741
17-03-18 01:22:12.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:12.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:12.240 -07 000000455 INF: FPGA: Recv ZSGSRD 35729
17-03-18 01:22:12.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:12.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:12.250 -07 000000569 INF: FPGA: Recv ZSGSRD 35743
17-03-18 01:22:12.250 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:22:12.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:22:12.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:12.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:12.260 -07 000000447 INF: FPGA: Recv ZSGSRD 35737
17-03-18 01:22:12.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:12.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:12.270 -07 000000561 INF: FPGA: Recv ZSGSRD 35744
17-03-18 01:22:12.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:12.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:12.280 -07 000000455 INF: FPGA: Recv ZSGSRD 35739
17-03-18 01:22:12.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:12.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:12.290 -07 000000461 INF: FPGA: Recv ZSGSRD 35737
17-03-18 01:22:12.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:12.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:12.300 -07 000000447 INF: FPGA: Recv ZSGSRD 35746
17-03-18 01:22:12.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:12.310 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:12.310 -07 000000576 INF: FPGA: Recv ZPIEZORD 31455
17-03-18 01:22:12.320 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:12.320 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -9.4 V.
17-03-18 01:22:12.320 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35740 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35740 (-169.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35729 (-169.0 uncal um), Max = 35746 (-169.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 01:22:12.320 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35740, posNoise = 6, negNoise = 11
17-03-18 01:22:12.320 -07 000000610 INF: Z Motor: After move to -0.169911, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:12.320 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:22:12.320 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:12.320 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:12.320 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:12.320 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:22:12.320 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:12.320 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:12.320 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:22:12.320 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:22:12.320 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:22:12.320 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:22:12.320 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 01:22:12.320 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:22:12.330 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:22:12.330 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:22:12.330 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:22:12.330 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:22:12.340 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:22:12.340 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:22:12.340 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:22:12.340 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:22:12.340 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37294 150\n [Camera]
17-03-18 01:22:12.540 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:22:12.930 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:22:12.930 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:22:12.940 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:12.940 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:22:12.940 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:22:12.940 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:12.940 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:12.940 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:22:12.950 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:12.950 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:22:13.130 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37294 775
17-03-18 01:22:13.280 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:22:13.340 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:22:13.340 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:22:13.340 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:13.340 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:22:13.340 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:22:13.340 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:13.340 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:13.340 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:22:13.350 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:13.350 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:22:13.460 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:22:13.460 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:22:13.470 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:13.470 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:22:13.470 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:22:13.470 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:13.470 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:13.470 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:22:13.480 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:13.480 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:22:13.660 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:22:13.660 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:22:13.660 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37294 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:22:13.660 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:22:13.660 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.169924693957672. ------
17-03-18 01:22:13.660 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:13.850 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:22:13.850 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 01:22:13.850 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:13.850 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 01:22:13.850 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 01:22:13.850 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:13.850 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:13.860 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:22:13.860 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:22:13.860 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:22:13.870 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:13.870 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 204 ms to get response, and 207 ms overall
17-03-18 01:22:13.870 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17632 mm
17-03-18 01:22:13.870 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:22:13.870 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:22:13.870 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:22:13.870 -07 000000591 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 01:22:13.880 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:14.720 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38517, sync = True, waitForSettling = False)
17-03-18 01:22:14.720 -07 000000501 INF: Z Motor: Moving to -0.176320 mm, started at -0.169925 mm, distance = -6.39 um
17-03-18 01:22:14.720 -07 000000501 INF: FPGA: Xmit ZDACW 38517\n [Z Motor]
17-03-18 01:22:15.720 -07 000000590 INF: FPGA: Recv YRDPOS 129482
17-03-18 01:22:15.720 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:22:15.720 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:22:15.720 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1841 ms to get response, and 1845 ms overall
17-03-18 01:22:15.720 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1830 ms to get response, and 1841 ms overall
17-03-18 01:22:15.720 -07 000000591 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:15.720 -07 000000501 INF: FPGA: 'ZDACW 38517' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 01:22:15.720 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:15.720 -07 000000561 INF: FPGA: Recv ZDACR 38517
17-03-18 01:22:15.720 -07 000000591 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:22:15.720 -07 000000591 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:22:15.730 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:22:15.730 -07 000000501 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-18 01:22:15.730 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:22:16.030 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.007176,
17-03-18 01:22:16.100 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:22:16.100 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 01:22:16.150 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:16.150 -07 000000501 INF: FPGA: Recv YRDPOS 131187
17-03-18 01:22:16.160 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:16.160 -07 000000591 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:16.160 -07 000000591 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 01:22:16.160 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.839 mm, average velocity = 2.192 mm/sec
17-03-18 01:22:17.110 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:17.110 -07 000000590 INF: FPGA: Recv YRDPOS 131187
17-03-18 01:22:17.120 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:17.120 -07 000000591 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:17.140 -07 000000591 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:22:17.140 -07 000000591 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:22:17.140 -07 000000591 INF: Y Motor: Moved to 64.0562 after 3266 ms (table move)
17-03-18 01:22:17.140 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176320 mm (DAC = 38517)
17-03-18 01:22:17.140 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:17.150 -07 000000455 INF: FPGA: Recv ZSGSRD 36742
17-03-18 01:22:17.150 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:22:17.150 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:17.150 -07 000000590 INF: FPGA: Recv ZSGSRD 36738
17-03-18 01:22:17.160 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:22:17.160 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:17.160 -07 000000430 INF: FPGA: Recv ZSGSRD 36739
17-03-18 01:22:17.170 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:17.170 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:17.170 -07 000000591 INF: FPGA: Recv ZSGSRD 36736
17-03-18 01:22:17.180 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:17.180 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:17.180 -07 000000430 INF: FPGA: Recv ZSGSRD 36736
17-03-18 01:22:17.190 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:17.190 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:17.190 -07 000000591 INF: FPGA: Recv ZSGSRD 36736
17-03-18 01:22:17.200 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:17.200 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:17.200 -07 000000430 INF: FPGA: Recv ZSGSRD 36732
17-03-18 01:22:17.210 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:17.210 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:17.210 -07 000000591 INF: FPGA: Recv ZSGSRD 36729
17-03-18 01:22:17.220 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:17.220 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:17.220 -07 000000590 INF: FPGA: Recv ZSGSRD 36738
17-03-18 01:22:17.230 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:17.230 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:17.230 -07 000000447 INF: FPGA: Recv ZSGSRD 36738
17-03-18 01:22:17.240 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:17.240 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:17.240 -07 000000501 INF: FPGA: Recv ZPIEZORD 32821
17-03-18 01:22:17.250 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:17.250 -07 000000479 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.877 V. Piezo Error = -8.7 V.
17-03-18 01:22:17.250 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36736 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36737 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36729 (-175.4 uncal um), Max = 36742 (-175.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:22:17.250 -07 000000479 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36736, posNoise = 6, negNoise = 7
17-03-18 01:22:17.250 -07 000000479 INF: Z Motor: After move to -0.176320, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:17.250 -07 000000479 INF: Z Motor: Settle wait time = 2428 ms, measure time = 101 ms (allowed 150 ms), total time = 2529 ms
17-03-18 01:22:17.250 -07 000000479 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:22:17.250 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:22:17.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:22:17.300 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3425 ms
17-03-18 01:22:17.300 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:22:17.300 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:17.300 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:17.300 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:17.300 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:17.300 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:22:17.300 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:17.300 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:17.300 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:22:17.310 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:22:17.310 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:22:17.320 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:22:17.320 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:22:17.320 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:22:17.370 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:22:17.670 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:22:17.670 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:22:17.670 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:22:17.670 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2672945024, 0x0, 559484976) start.
17-03-18 01:22:17.710 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:22:17.710 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 01:22:17.710 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 01:22:17.800 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2672945024, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:22:17.800 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:17.800 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:22:17.800 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:22:17.810 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:17.810 -07 000000430 INF: Autofocus start
17-03-18 01:22:17.810 -07 000000430 INF: MeasureProfile start
17-03-18 01:22:17.810 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:17.820 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:22:17.820 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:22:17.820 -07 000000430 INF: MeasureProfile done
17-03-18 01:22:17.820 -07 000000430 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:22:17.820 -07 000000430 INF: Autofocus finished
17-03-18 01:22:18.020 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:22:18.020 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:22:18.020 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.176323209250865. ----------
17-03-18 01:22:18.020 -07 000000610 INF: Cycle	86	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:22:18.030 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37032, sync = True, waitForSettling = True)
17-03-18 01:22:18.030 -07 000000610 INF: Z Motor: Moving to -0.169522 mm, started at -0.176323 mm, distance = 6.80 um
17-03-18 01:22:18.030 -07 000000610 INF: FPGA: Xmit ZDACW 37032\n [Z Motor]
17-03-18 01:22:18.030 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 01:22:18.040 -07 000000610 INF: FPGA: 'ZDACW 37032' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:18.040 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:18.040 -07 000000455 INF: FPGA: Recv ZDACR 37032
17-03-18 01:22:18.050 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:18.050 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:22:18.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:18.200 -07 000000591 INF: FPGA: Recv ZSGSRD 35676
17-03-18 01:22:18.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:18.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:18.210 -07 000000430 INF: FPGA: Recv ZSGSRD 35686
17-03-18 01:22:18.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:18.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:18.220 -07 000000479 INF: FPGA: Recv ZSGSRD 35677
17-03-18 01:22:18.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:18.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:18.230 -07 000000455 INF: FPGA: Recv ZSGSRD 35680
17-03-18 01:22:18.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:18.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:18.240 -07 000000591 INF: FPGA: Recv ZSGSRD 35682
17-03-18 01:22:18.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:18.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:18.250 -07 000000455 INF: FPGA: Recv ZSGSRD 35680
17-03-18 01:22:18.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:18.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:18.260 -07 000000447 INF: FPGA: Recv ZSGSRD 35682
17-03-18 01:22:18.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:18.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:18.270 -07 000000430 INF: FPGA: Recv ZSGSRD 35673
17-03-18 01:22:18.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:18.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:18.280 -07 000000430 INF: FPGA: Recv ZSGSRD 35676
17-03-18 01:22:18.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:18.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:18.290 -07 000000467 INF: FPGA: Recv ZSGSRD 35679
17-03-18 01:22:18.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:18.300 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:18.300 -07 000000501 INF: FPGA: Recv ZPIEZORD 31368
17-03-18 01:22:18.310 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:18.310 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -9.5 V.
17-03-18 01:22:18.310 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35679 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35680 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35673 (-168.6 uncal um), Max = 35686 (-168.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:22:18.310 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35679, posNoise = 7, negNoise = 6
17-03-18 01:22:18.310 -07 000000610 INF: Z Motor: After move to -0.169522, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:18.310 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:22:18.310 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:18.310 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:18.310 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:18.310 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:18.310 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:22:18.310 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:22:18.310 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:22:18.310 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:18.310 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:22:18.310 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:22:18.310 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:18.310 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:22:18.320 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:22:18.320 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:22:18.320 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:22:18.320 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:22:18.330 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:22:18.330 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:22:18.330 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:22:18.330 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:22:18.340 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37209 150\n [Camera]
17-03-18 01:22:18.540 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:22:18.930 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:22:18.930 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:22:18.930 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:18.930 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:18.930 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 01:22:18.930 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:22:18.930 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:22:18.930 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:18.930 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:18.930 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 01:22:19.120 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37209 775
17-03-18 01:22:19.270 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:22:19.310 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:22:19.310 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:22:19.310 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:19.310 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:19.320 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 01:22:19.320 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:22:19.320 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:19.320 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:22:19.320 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:19.320 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:22:19.460 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:22:19.460 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:22:19.460 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:19.460 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:19.460 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:22:19.460 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:22:19.460 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:22:19.460 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:19.460 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:19.460 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 01:22:19.650 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:22:19.650 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:22:19.650 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37209 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-18 01:22:19.650 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:22:19.650 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.169532817017024. ------
17-03-18 01:22:19.780 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:19.840 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 01:22:19.840 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 01:22:19.840 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:19.850 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:22:19.850 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:22:19.850 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:19.850 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:19.850 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:22:19.850 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:22:19.860 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:22:19.860 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17591 mm
17-03-18 01:22:19.860 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:22:19.870 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:19.870 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 83 ms to get response, and 93 ms overall
17-03-18 01:22:19.870 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:22:19.870 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:22:19.870 -07 000000455 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 01:22:19.880 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:20.720 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38428, sync = True, waitForSettling = False)
17-03-18 01:22:20.720 -07 000000438 INF: Z Motor: Moving to -0.175912 mm, started at -0.169533 mm, distance = -6.38 um
17-03-18 01:22:20.720 -07 000000438 INF: FPGA: Xmit ZDACW 38428\n [Z Motor]
17-03-18 01:22:21.720 -07 000000569 INF: FPGA: Recv YRDPOS 131188
17-03-18 01:22:21.720 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:22:21.720 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:22:21.720 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1840 ms to get response, and 1846 ms overall
17-03-18 01:22:21.720 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1830 ms to get response, and 1845 ms overall
17-03-18 01:22:21.720 -07 000000455 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:21.720 -07 000000438 INF: FPGA: 'ZDACW 38428' command took 0 ms to send, 990 ms to get response, and 997 ms overall
17-03-18 01:22:21.720 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:21.720 -07 000000590 INF: FPGA: Recv ZDACR 38428
17-03-18 01:22:21.720 -07 000000455 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:22:21.720 -07 000000455 INF: Y Motor: Moving 1338 steps-13
17-03-18 01:22:21.730 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:22:21.730 -07 000000438 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-18 01:22:21.730 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:22:22.100 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 01:22:22.100 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 01:22:22.150 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:22.150 -07 000000438 INF: FPGA: Recv YRDPOS 132870
17-03-18 01:22:22.160 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:22.160 -07 000000455 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:22.160 -07 000000455 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:22:22.160 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.836 mm, average velocity = 2.201 mm/sec
17-03-18 01:22:22.250 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:22:22.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:22:22.340 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.018051,
17-03-18 01:22:23.110 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:23.110 -07 000000569 INF: FPGA: Recv YRDPOS 132871
17-03-18 01:22:23.120 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:23.120 -07 000000455 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:23.140 -07 000000455 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:22:23.140 -07 000000455 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:22:23.140 -07 000000455 INF: Y Motor: Moved to 64.8784 after 3271 ms (table move)
17-03-18 01:22:23.140 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175912 mm (DAC = 38428)
17-03-18 01:22:23.150 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:23.150 -07 000000561 INF: FPGA: Recv ZSGSRD 36678
17-03-18 01:22:23.160 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:23.160 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:23.160 -07 000000455 INF: FPGA: Recv ZSGSRD 36671
17-03-18 01:22:23.170 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:23.170 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:23.170 -07 000000461 INF: FPGA: Recv ZSGSRD 36676
17-03-18 01:22:23.180 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:23.180 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:23.180 -07 000000455 INF: FPGA: Recv ZSGSRD 36678
17-03-18 01:22:23.190 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:23.190 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:23.190 -07 000000480 INF: FPGA: Recv ZSGSRD 36674
17-03-18 01:22:23.200 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:23.200 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:23.200 -07 000000455 INF: FPGA: Recv ZSGSRD 36677
17-03-18 01:22:23.210 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:23.210 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:23.210 -07 000000480 INF: FPGA: Recv ZSGSRD 36669
17-03-18 01:22:23.220 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:23.220 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:23.220 -07 000000455 INF: FPGA: Recv ZSGSRD 36678
17-03-18 01:22:23.230 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:23.230 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:23.230 -07 000000569 INF: FPGA: Recv ZSGSRD 36674
17-03-18 01:22:23.240 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:23.240 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:23.240 -07 000000480 INF: FPGA: Recv ZSGSRD 36673
17-03-18 01:22:23.250 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:23.250 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:23.250 -07 000000569 INF: FPGA: Recv ZPIEZORD 32740
17-03-18 01:22:23.260 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:23.260 -07 000000447 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.864 V. Piezo Error = -8.7 V.
17-03-18 01:22:23.260 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36675 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36675 (-175.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36669 (-175.0 uncal um), Max = 36678 (-175.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:22:23.260 -07 000000447 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36675, posNoise = 3, negNoise = 6
17-03-18 01:22:23.260 -07 000000447 INF: Z Motor: After move to -0.175912, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:23.260 -07 000000447 INF: Z Motor: Settle wait time = 2426 ms, measure time = 111 ms (allowed 150 ms), total time = 2537 ms
17-03-18 01:22:23.260 -07 000000447 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:22:23.300 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3431 ms
17-03-18 01:22:23.300 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:22:23.300 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:23.300 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:23.300 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:23.300 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:22:23.300 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:23.300 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:23.300 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:23.300 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:22:23.310 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:22:23.310 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:22:23.320 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:22:23.320 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:22:23.320 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:22:23.360 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:22:23.660 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:22:23.660 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:22:23.670 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:22:23.670 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 01:22:23.700 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:22:23.700 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:22:23.700 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:22:23.790 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:22:23.790 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:23.790 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:22:23.790 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:22:23.900 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:23.900 -07 000000480 INF: Autofocus start
17-03-18 01:22:23.900 -07 000000480 INF: MeasureProfile start
17-03-18 01:22:23.900 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:23.910 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:22:23.910 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:22:23.910 -07 000000480 INF: MeasureProfile done
17-03-18 01:22:23.910 -07 000000480 INF: X=48  Z correction [um]=0.1739867
17-03-18 01:22:23.910 -07 000000480 INF: Autofocus finished
17-03-18 01:22:24.110 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:22:24.110 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:22:24.110 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.175931332310218. ----------
17-03-18 01:22:24.110 -07 000000610 INF: Cycle	86	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:22:24.120 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36978, sync = True, waitForSettling = True)
17-03-18 01:22:24.120 -07 000000610 INF: Z Motor: Moving to -0.169274 mm, started at -0.175931 mm, distance = 6.66 um
17-03-18 01:22:24.120 -07 000000610 INF: FPGA: Xmit ZDACW 36978\n [Z Motor]
17-03-18 01:22:24.120 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:22:24.130 -07 000000610 INF: FPGA: 'ZDACW 36978' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:24.130 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:24.130 -07 000000447 INF: FPGA: Recv ZDACR 36978
17-03-18 01:22:24.140 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:24.140 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:22:24.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:24.290 -07 000000480 INF: FPGA: Recv ZSGSRD 35643
17-03-18 01:22:24.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:24.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:24.300 -07 000000479 INF: FPGA: Recv ZSGSRD 35639
17-03-18 01:22:24.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:24.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:24.310 -07 000000461 INF: FPGA: Recv ZSGSRD 35639
17-03-18 01:22:24.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:24.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:24.320 -07 000000447 INF: FPGA: Recv ZSGSRD 35639
17-03-18 01:22:24.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:24.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:24.330 -07 000000480 INF: FPGA: Recv ZSGSRD 35636
17-03-18 01:22:24.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:24.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:24.340 -07 000000479 INF: FPGA: Recv ZSGSRD 35645
17-03-18 01:22:24.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:24.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:24.350 -07 000000569 INF: FPGA: Recv ZSGSRD 35636
17-03-18 01:22:24.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:24.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:24.360 -07 000000447 INF: FPGA: Recv ZSGSRD 35638
17-03-18 01:22:24.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:24.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:24.370 -07 000000561 INF: FPGA: Recv ZSGSRD 35641
17-03-18 01:22:24.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:24.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:24.380 -07 000000479 INF: FPGA: Recv ZSGSRD 35637
17-03-18 01:22:24.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:24.390 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:24.390 -07 000000461 INF: FPGA: Recv ZPIEZORD 31350
17-03-18 01:22:24.400 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:24.400 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.642 V. Piezo Error = -9.5 V.
17-03-18 01:22:24.400 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35639 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35639 (-168.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35636 (-168.4 uncal um), Max = 35645 (-168.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:22:24.400 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35639, posNoise = 6, negNoise = 3
17-03-18 01:22:24.400 -07 000000610 INF: Z Motor: After move to -0.169274, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:24.400 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:22:24.400 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:24.400 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:24.400 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:24.400 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:24.400 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:22:24.400 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:22:24.400 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:22:24.400 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:24.400 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:22:24.400 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:22:24.400 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:24.400 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:22:24.410 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:22:24.410 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:22:24.410 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:22:24.410 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:22:24.420 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:22:24.420 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:22:24.420 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:22:24.420 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:22:24.430 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37155 150\n [Camera]
17-03-18 01:22:24.630 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:22:25.020 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:22:25.020 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:22:25.020 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:25.020 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:22:25.020 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:22:25.020 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:25.020 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:25.020 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 01:22:25.020 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:25.020 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:22:25.210 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37155 775
17-03-18 01:22:25.360 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:22:25.410 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:22:25.410 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:22:25.410 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:25.420 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:25.420 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:22:25.420 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:22:25.420 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:22:25.420 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:25.420 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:25.430 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:22:25.550 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:22:25.550 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:22:25.550 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:25.550 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:22:25.550 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:22:25.550 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:25.670 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:25.670 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:22:25.670 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:25.670 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:22:25.740 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:22:25.740 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:22:25.740 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37155 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-18 01:22:25.740 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:22:25.740 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169275848531354. ------
17-03-18 01:22:25.740 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:25.740 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17597 mm
17-03-18 01:22:25.740 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:22:25.750 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:25.750 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:22:25.750 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:22:25.750 -07 000000479 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 01:22:25.750 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:25.750 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38440, sync = True, waitForSettling = False)
17-03-18 01:22:25.750 -07 000000438 INF: Z Motor: Moving to -0.175967 mm, started at -0.169276 mm, distance = -6.69 um
17-03-18 01:22:25.750 -07 000000467 INF: FPGA: Recv YRDPOS 132871
17-03-18 01:22:25.760 -07 000000438 INF: FPGA: Xmit ZDACW 38440\n [Z Motor]
17-03-18 01:22:25.760 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:22:25.760 -07 000000479 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:25.760 -07 000000479 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:22:25.760 -07 000000479 INF: Y Motor: Moving 1351 steps-30
17-03-18 01:22:25.770 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:22:25.780 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:22:26.040 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 01:22:26.040 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 01:22:26.040 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:26.050 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:26.050 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 01:22:26.050 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 01:22:26.050 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:26.050 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:26.050 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-18 01:22:26.050 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-18 01:22:26.720 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:22:26.720 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:22:26.720 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:22:26.720 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 931 ms to get response, and 960 ms overall
17-03-18 01:22:26.720 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 940 ms to get response, and 968 ms overall
17-03-18 01:22:26.720 -07 000000438 INF: FPGA: 'ZDACW 38440' command took 0 ms to send, 950 ms to get response, and 967 ms overall
17-03-18 01:22:26.720 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:26.720 -07 000000455 INF: FPGA: Recv ZDACR 38440
17-03-18 01:22:26.730 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:26.730 -07 000000438 INF: Z Motor: MoveAbsStepped took 978 ms (did NOT wait for settling yet))
17-03-18 01:22:26.760 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:26.760 -07 000000438 INF: FPGA: Recv YRDPOS 134581
17-03-18 01:22:26.770 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:22:26.770 -07 000000479 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:26.770 -07 000000479 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:22:26.770 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 960 ms, distance = 0.844 mm, average velocity = 0.879 mm/sec
17-03-18 01:22:27.250 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:22:27.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:22:27.710 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.989471,
17-03-18 01:22:27.720 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:27.720 -07 000000461 INF: FPGA: Recv YRDPOS 134581
17-03-18 01:22:27.730 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:27.730 -07 000000479 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:27.760 -07 000000479 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:22:27.760 -07 000000479 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:22:27.760 -07 000000479 INF: Y Motor: Moved to 65.7134 after 2011 ms (table move)
17-03-18 01:22:27.760 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175967 mm (DAC = 38440)
17-03-18 01:22:27.760 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:27.770 -07 000000438 INF: FPGA: Recv ZSGSRD 36682
17-03-18 01:22:27.770 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:22:27.770 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:27.770 -07 000000479 INF: FPGA: Recv ZSGSRD 36686
17-03-18 01:22:27.780 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:27.780 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:27.780 -07 000000479 INF: FPGA: Recv ZSGSRD 36685
17-03-18 01:22:27.790 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:27.790 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:27.790 -07 000000438 INF: FPGA: Recv ZSGSRD 36680
17-03-18 01:22:27.800 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:27.800 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:27.800 -07 000000501 INF: FPGA: Recv ZSGSRD 36683
17-03-18 01:22:27.810 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:27.810 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:27.810 -07 000000501 INF: FPGA: Recv ZSGSRD 36679
17-03-18 01:22:27.820 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:27.820 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:27.820 -07 000000501 INF: FPGA: Recv ZSGSRD 36685
17-03-18 01:22:27.830 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:27.830 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:27.830 -07 000000430 INF: FPGA: Recv ZSGSRD 36677
17-03-18 01:22:27.840 -07 000000447 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:27.840 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:27.840 -07 000000430 INF: FPGA: Recv ZSGSRD 36679
17-03-18 01:22:27.850 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:27.850 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:27.850 -07 000000430 INF: FPGA: Recv ZSGSRD 36683
17-03-18 01:22:27.860 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:27.860 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:27.860 -07 000000430 INF: FPGA: Recv ZPIEZORD 32738
17-03-18 01:22:27.870 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:27.870 -07 000000447 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.866 V. Piezo Error = -8.7 V.
17-03-18 01:22:27.870 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36682 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36682 (-175.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36677 (-175.1 uncal um), Max = 36686 (-175.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:22:27.870 -07 000000447 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36682, posNoise = 4, negNoise = 5
17-03-18 01:22:27.870 -07 000000447 INF: Z Motor: After move to -0.175967, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:27.870 -07 000000447 INF: Z Motor: Settle wait time = 2014 ms, measure time = 103 ms (allowed 150 ms), total time = 2117 ms
17-03-18 01:22:27.870 -07 000000447 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 01:22:27.920 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2171 ms
17-03-18 01:22:27.920 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:22:27.920 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:27.920 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:27.920 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:27.920 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:27.920 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:22:27.920 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:27.920 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:22:27.920 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:22:27.930 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:22:27.930 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:22:27.940 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 15 ms.
17-03-18 01:22:27.940 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 01:22:27.940 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:22:27.990 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:22:28.290 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:22:28.290 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:22:28.290 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:22:28.290 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-18 01:22:28.330 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:22:28.330 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 01:22:28.330 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 01:22:28.420 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:22:28.420 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:28.420 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:22:28.420 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:22:28.430 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:28.430 -07 000000590 INF: Autofocus start
17-03-18 01:22:28.430 -07 000000590 INF: MeasureProfile start
17-03-18 01:22:28.430 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:28.440 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:22:28.440 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:22:28.440 -07 000000590 INF: MeasureProfile done
17-03-18 01:22:28.440 -07 000000590 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:22:28.440 -07 000000590 INF: Autofocus finished
17-03-18 01:22:28.640 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:22:28.640 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:22:28.640 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.17597630179521. ----------
17-03-18 01:22:28.640 -07 000000610 INF: Cycle	86	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:22:28.650 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36937, sync = True, waitForSettling = True)
17-03-18 01:22:28.650 -07 000000610 INF: Z Motor: Moving to -0.169087 mm, started at -0.175976 mm, distance = 6.89 um
17-03-18 01:22:28.650 -07 000000610 INF: FPGA: Xmit ZDACW 36937\n [Z Motor]
17-03-18 01:22:28.650 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:22:28.660 -07 000000610 INF: FPGA: 'ZDACW 36937' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:28.660 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:28.660 -07 000000561 INF: FPGA: Recv ZDACR 36937
17-03-18 01:22:28.670 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:28.670 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:22:28.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:28.820 -07 000000561 INF: FPGA: Recv ZSGSRD 35617
17-03-18 01:22:28.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:28.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:28.830 -07 000000561 INF: FPGA: Recv ZSGSRD 35614
17-03-18 01:22:28.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:28.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:28.840 -07 000000561 INF: FPGA: Recv ZSGSRD 35605
17-03-18 01:22:28.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:28.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:28.850 -07 000000561 INF: FPGA: Recv ZSGSRD 35612
17-03-18 01:22:28.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:28.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:28.860 -07 000000561 INF: FPGA: Recv ZSGSRD 35610
17-03-18 01:22:28.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:28.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:28.870 -07 000000561 INF: FPGA: Recv ZSGSRD 35616
17-03-18 01:22:28.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:28.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:28.880 -07 000000561 INF: FPGA: Recv ZSGSRD 35606
17-03-18 01:22:28.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:28.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:28.890 -07 000000467 INF: FPGA: Recv ZSGSRD 35606
17-03-18 01:22:28.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:28.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:28.900 -07 000000467 INF: FPGA: Recv ZSGSRD 35617
17-03-18 01:22:28.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:28.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:28.910 -07 000000438 INF: FPGA: Recv ZSGSRD 35607
17-03-18 01:22:28.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:28.920 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:28.920 -07 000000438 INF: FPGA: Recv ZPIEZORD 31299
17-03-18 01:22:28.930 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:28.930 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -9.5 V.
17-03-18 01:22:28.930 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35611 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35611 (-168.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35605 (-168.2 uncal um), Max = 35617 (-168.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:22:28.930 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35611, posNoise = 6, negNoise = 6
17-03-18 01:22:28.930 -07 000000610 INF: Z Motor: After move to -0.169087, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:28.930 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:22:28.930 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:28.930 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:28.930 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:28.930 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:28.930 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:22:28.930 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:22:28.930 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:28.930 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:22:28.930 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:28.930 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:22:28.940 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:22:28.940 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:22:28.940 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:22:28.940 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:22:28.940 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:22:28.940 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:22:28.950 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:22:28.950 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 01:22:28.950 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:22:28.950 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 01:22:28.960 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37114 150\n [Camera]
17-03-18 01:22:29.160 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:22:29.550 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:22:29.550 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:22:29.550 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:29.550 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:22:29.550 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:22:29.550 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:29.550 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:29.550 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:22:29.560 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:29.560 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:22:29.740 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37114 775
17-03-18 01:22:29.890 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:22:29.950 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:22:29.950 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:22:29.950 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:29.950 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:29.950 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:22:29.950 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:22:29.950 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:22:29.950 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:29.960 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:29.960 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:22:30.080 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-18 01:22:30.080 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-18 01:22:30.080 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:30.090 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:22:30.090 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:22:30.090 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:30.090 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:30.090 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:22:30.090 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:30.090 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:22:30.270 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:22:30.270 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:22:30.270 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37114 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-18 01:22:30.270 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:22:30.270 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169095970591384. ------
17-03-18 01:22:30.280 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:30.280 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17545 mm
17-03-18 01:22:30.280 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:22:30.280 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:30.280 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:22:30.280 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38327, sync = True, waitForSettling = False)
17-03-18 01:22:30.280 -07 000000461 INF: Z Motor: Moving to -0.175450 mm, started at -0.169096 mm, distance = -6.35 um
17-03-18 01:22:30.280 -07 000000576 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 01:22:30.290 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:30.290 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:30.290 -07 000000467 INF: FPGA: Recv YRDPOS 134581
17-03-18 01:22:30.300 -07 000000461 INF: FPGA: Xmit ZDACW 38327\n [Z Motor]
17-03-18 01:22:30.300 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:22:30.300 -07 000000576 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:30.300 -07 000000576 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:22:30.300 -07 000000576 INF: Y Motor: Moving 1343 steps-19
17-03-18 01:22:30.300 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 01:22:30.310 -07 000000461 INF: FPGA: 'ZDACW 38327' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:22:30.310 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:22:30.320 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:22:30.330 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:30.330 -07 000000430 INF: FPGA: Recv ZDACR 38327
17-03-18 01:22:30.340 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:22:30.340 -07 000000461 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 01:22:30.490 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:22:30.490 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:22:30.490 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:30.490 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:22:30.490 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:22:30.490 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:30.500 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:30.500 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:30.500 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 01:22:30.500 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:22:30.510 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:22:30.510 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:22:30.690 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 01:22:30.690 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-18 01:22:30.740 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:30.740 -07 000000438 INF: FPGA: Recv YRDPOS 136271
17-03-18 01:22:30.750 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:30.750 -07 000000576 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:30.750 -07 000000576 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:22:30.750 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 01:22:31.700 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:31.700 -07 000000591 INF: FPGA: Recv YRDPOS 136271
17-03-18 01:22:31.710 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:31.710 -07 000000576 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:31.730 -07 000000576 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:22:31.730 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:22:31.730 -07 000000576 INF: Y Motor: Moved to 66.5386 after 1455 ms (table move)
17-03-18 01:22:31.740 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175450 mm (DAC = 38327)
17-03-18 01:22:31.740 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:31.740 -07 000000480 INF: FPGA: Recv ZSGSRD 36608
17-03-18 01:22:31.750 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:22:31.750 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:31.750 -07 000000590 INF: FPGA: Recv ZSGSRD 36599
17-03-18 01:22:31.760 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:31.760 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:31.760 -07 000000590 INF: FPGA: Recv ZSGSRD 36599
17-03-18 01:22:31.770 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:31.770 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:31.770 -07 000000590 INF: FPGA: Recv ZSGSRD 36611
17-03-18 01:22:31.780 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:31.780 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:31.780 -07 000000447 INF: FPGA: Recv ZSGSRD 36601
17-03-18 01:22:31.790 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:31.790 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:31.790 -07 000000447 INF: FPGA: Recv ZSGSRD 36594
17-03-18 01:22:31.800 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:31.800 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:31.800 -07 000000447 INF: FPGA: Recv ZSGSRD 36605
17-03-18 01:22:31.810 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:31.810 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:31.810 -07 000000447 INF: FPGA: Recv ZSGSRD 36602
17-03-18 01:22:31.820 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:31.820 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:31.820 -07 000000461 INF: FPGA: Recv ZSGSRD 36594
17-03-18 01:22:31.830 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:31.830 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:31.830 -07 000000590 INF: FPGA: Recv ZSGSRD 36603
17-03-18 01:22:31.840 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:31.840 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:31.840 -07 000000461 INF: FPGA: Recv ZPIEZORD 32679
17-03-18 01:22:31.850 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:31.850 -07 000000501 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.848 V. Piezo Error = -8.7 V.
17-03-18 01:22:31.850 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36602 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36602 (-174.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36594 (-174.5 uncal um), Max = 36611 (-174.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:22:31.850 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36602, posNoise = 9, negNoise = 8
17-03-18 01:22:31.850 -07 000000501 INF: Z Motor: After move to -0.175450, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:31.850 -07 000000501 INF: Z Motor: Settle wait time = 1460 ms, measure time = 106 ms (allowed 150 ms), total time = 1566 ms
17-03-18 01:22:31.850 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 01:22:31.900 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 01:22:31.900 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:22:31.900 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:31.900 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:31.900 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:31.900 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:31.910 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:22:31.910 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:31.910 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:31.910 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:22:31.910 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:22:31.910 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:22:31.920 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:22:31.920 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:22:31.920 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:22:31.970 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:22:32.250 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:22:32.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:22:32.260 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:22:32.260 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:22:32.270 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:22:32.270 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) start.
17-03-18 01:22:32.300 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:22:32.300 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 01:22:32.300 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:22:32.380 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:22:32.380 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:32.380 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:22:32.380 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:22:32.410 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:32.410 -07 000000461 INF: Autofocus start
17-03-18 01:22:32.410 -07 000000461 INF: MeasureProfile start
17-03-18 01:22:32.420 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:32.420 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:22:32.420 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:22:32.430 -07 000000461 INF: MeasureProfile done
17-03-18 01:22:32.430 -07 000000461 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:22:32.430 -07 000000461 INF: Autofocus finished
17-03-18 01:22:32.620 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:22:32.620 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 01:22:32.620 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.17546236482387. ----------
17-03-18 01:22:32.630 -07 000000610 INF: Cycle	86	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:22:32.630 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36824, sync = True, waitForSettling = True)
17-03-18 01:22:32.630 -07 000000610 INF: Z Motor: Moving to -0.168569 mm, started at -0.175462 mm, distance = 6.89 um
17-03-18 01:22:32.630 -07 000000610 INF: FPGA: Xmit ZDACW 36824\n [Z Motor]
17-03-18 01:22:32.630 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:22:32.640 -07 000000610 INF: FPGA: 'ZDACW 36824' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:22:32.640 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:32.640 -07 000000438 INF: FPGA: Recv ZDACR 36824
17-03-18 01:22:32.650 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:32.650 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:22:32.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:32.800 -07 000000590 INF: FPGA: Recv ZSGSRD 35536
17-03-18 01:22:32.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:32.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:32.820 -07 000000501 INF: FPGA: Recv ZSGSRD 35528
17-03-18 01:22:32.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:22:32.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:32.830 -07 000000461 INF: FPGA: Recv ZSGSRD 35530
17-03-18 01:22:32.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:32.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:32.840 -07 000000501 INF: FPGA: Recv ZSGSRD 35534
17-03-18 01:22:32.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:32.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:32.850 -07 000000461 INF: FPGA: Recv ZSGSRD 35526
17-03-18 01:22:32.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:32.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:32.860 -07 000000501 INF: FPGA: Recv ZSGSRD 35531
17-03-18 01:22:32.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:32.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:32.870 -07 000000438 INF: FPGA: Recv ZSGSRD 35535
17-03-18 01:22:32.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:32.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:32.880 -07 000000501 INF: FPGA: Recv ZSGSRD 35524
17-03-18 01:22:32.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:32.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:32.890 -07 000000590 INF: FPGA: Recv ZSGSRD 35533
17-03-18 01:22:32.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:32.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:32.900 -07 000000461 INF: FPGA: Recv ZSGSRD 35528
17-03-18 01:22:32.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:32.910 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:32.910 -07 000000461 INF: FPGA: Recv ZPIEZORD 31259
17-03-18 01:22:32.920 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:32.920 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.619 V. Piezo Error = -9.4 V.
17-03-18 01:22:32.920 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35530 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35530 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35524 (-167.7 uncal um), Max = 35536 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:22:32.920 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35530, posNoise = 6, negNoise = 6
17-03-18 01:22:32.920 -07 000000610 INF: Z Motor: After move to -0.168569, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:32.920 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 01:22:32.920 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:32.920 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:32.920 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:32.920 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:32.920 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:22:32.920 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:32.920 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:22:32.920 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:22:32.920 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:32.920 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:22:32.920 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:22:32.920 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:22:32.930 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:22:32.930 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:22:32.930 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:22:32.930 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:22:32.940 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:22:32.940 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:22:32.940 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:22:32.940 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:22:32.950 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37000 150\n [Camera]
17-03-18 01:22:33.080 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.989471,
17-03-18 01:22:33.150 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:22:33.540 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:22:33.540 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:22:33.540 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:33.540 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:33.540 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:22:33.540 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:22:33.540 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:22:33.540 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:33.540 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:33.540 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:22:33.730 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37000 775
17-03-18 01:22:33.880 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:22:33.940 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:22:33.940 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:22:33.940 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:33.940 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 01:22:33.940 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:22:33.940 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:33.940 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:33.940 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:22:33.950 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:33.950 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:22:34.070 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:22:34.070 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:22:34.070 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:34.170 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:22:34.170 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:22:34.180 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:34.180 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:22:34.180 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:34.180 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:34.180 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 01:22:34.260 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:22:34.260 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:22:34.260 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37000 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-18 01:22:34.260 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:22:34.260 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168575609407902. ------
17-03-18 01:22:34.270 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:34.270 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17535 mm
17-03-18 01:22:34.270 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:22:34.270 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:34.270 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:22:34.270 -07 000000467 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 01:22:34.270 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38305, sync = True, waitForSettling = False)
17-03-18 01:22:34.270 -07 000000438 INF: Z Motor: Moving to -0.175349 mm, started at -0.168576 mm, distance = -6.77 um
17-03-18 01:22:34.280 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:34.280 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:34.280 -07 000000501 INF: FPGA: Recv YRDPOS 136271
17-03-18 01:22:34.290 -07 000000438 INF: FPGA: Xmit ZDACW 38305\n [Z Motor]
17-03-18 01:22:34.290 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:22:34.290 -07 000000467 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:34.290 -07 000000467 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:22:34.290 -07 000000467 INF: Y Motor: Moving 1350 steps-29
17-03-18 01:22:34.290 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:22:34.300 -07 000000438 INF: FPGA: 'ZDACW 38305' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:22:34.300 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:22:34.310 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:22:34.320 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:34.320 -07 000000569 INF: FPGA: Recv ZDACR 38305
17-03-18 01:22:34.330 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:22:34.330 -07 000000438 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 01:22:34.500 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:22:34.500 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:22:34.580 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:22:34.580 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:22:34.580 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:34.580 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:22:34.580 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:22:34.580 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:34.580 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:34.580 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:34.580 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 01:22:34.590 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:22:34.680 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:22:34.680 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 396 ms overall
17-03-18 01:22:34.730 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:34.730 -07 000000590 INF: FPGA: Recv YRDPOS 137976
17-03-18 01:22:34.740 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:34.740 -07 000000467 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:34.740 -07 000000467 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 01:22:34.740 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 01:22:35.690 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:35.690 -07 000000569 INF: FPGA: Recv YRDPOS 137976
17-03-18 01:22:35.700 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:35.700 -07 000000467 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:35.720 -07 000000467 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:22:35.720 -07 000000467 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:22:35.720 -07 000000467 INF: Y Motor: Moved to 67.3711 after 1453 ms (table move)
17-03-18 01:22:35.730 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175349 mm (DAC = 38305)
17-03-18 01:22:35.730 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:35.730 -07 000000430 INF: FPGA: Recv ZSGSRD 36590
17-03-18 01:22:35.740 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:35.740 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:35.740 -07 000000569 INF: FPGA: Recv ZSGSRD 36587
17-03-18 01:22:35.750 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:35.750 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:35.750 -07 000000480 INF: FPGA: Recv ZSGSRD 36583
17-03-18 01:22:35.760 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:35.760 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:35.760 -07 000000591 INF: FPGA: Recv ZSGSRD 36592
17-03-18 01:22:35.770 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:35.770 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:35.770 -07 000000461 INF: FPGA: Recv ZSGSRD 36586
17-03-18 01:22:35.780 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:35.780 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:35.780 -07 000000480 INF: FPGA: Recv ZSGSRD 36594
17-03-18 01:22:35.790 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:35.790 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:35.790 -07 000000591 INF: FPGA: Recv ZSGSRD 36584
17-03-18 01:22:35.800 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:35.800 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:35.800 -07 000000461 INF: FPGA: Recv ZSGSRD 36578
17-03-18 01:22:35.810 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:35.810 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:35.810 -07 000000467 INF: FPGA: Recv ZSGSRD 36594
17-03-18 01:22:35.820 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:35.820 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:35.820 -07 000000591 INF: FPGA: Recv ZSGSRD 36585
17-03-18 01:22:35.830 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:35.830 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:35.830 -07 000000461 INF: FPGA: Recv ZPIEZORD 32650
17-03-18 01:22:35.840 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:35.840 -07 000000561 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.845 V. Piezo Error = -8.7 V.
17-03-18 01:22:35.840 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36587 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36586 (-174.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36578 (-174.4 uncal um), Max = 36594 (-174.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:22:35.840 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36587, posNoise = 7, negNoise = 9
17-03-18 01:22:35.840 -07 000000561 INF: Z Motor: After move to -0.175349, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:35.840 -07 000000561 INF: Z Motor: Settle wait time = 1457 ms, measure time = 109 ms (allowed 150 ms), total time = 1566 ms
17-03-18 01:22:35.840 -07 000000561 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:22:35.890 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 01:22:35.890 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:22:35.890 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:35.890 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:35.890 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:35.890 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:35.890 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:22:35.890 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:35.890 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:22:35.890 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:22:35.900 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:22:35.900 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:22:35.900 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:22:35.900 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:22:35.910 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:22:35.950 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:22:36.250 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:22:36.250 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:22:36.250 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:22:36.250 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 01:22:36.290 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:22:36.290 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 01:22:36.290 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:22:36.370 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:22:36.370 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:36.370 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:22:36.370 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:22:36.390 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:36.390 -07 000000590 INF: Autofocus start
17-03-18 01:22:36.390 -07 000000590 INF: MeasureProfile start
17-03-18 01:22:36.390 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:36.400 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:22:36.400 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:22:36.410 -07 000000590 INF: MeasureProfile done
17-03-18 01:22:36.410 -07 000000590 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:22:36.410 -07 000000590 INF: Autofocus finished
17-03-18 01:22:36.600 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:22:36.600 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:22:36.600 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175366001641743. ----------
17-03-18 01:22:36.600 -07 000000610 INF: Cycle	86	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:22:36.610 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36837, sync = True, waitForSettling = True)
17-03-18 01:22:36.610 -07 000000610 INF: Z Motor: Moving to -0.168629 mm, started at -0.175366 mm, distance = 6.74 um
17-03-18 01:22:36.610 -07 000000610 INF: FPGA: Xmit ZDACW 36837\n [Z Motor]
17-03-18 01:22:36.610 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:22:36.620 -07 000000610 INF: FPGA: 'ZDACW 36837' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:36.620 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:36.620 -07 000000590 INF: FPGA: Recv ZDACR 36837
17-03-18 01:22:36.630 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:36.630 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:22:36.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:36.780 -07 000000438 INF: FPGA: Recv ZSGSRD 35540
17-03-18 01:22:36.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:36.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:36.790 -07 000000461 INF: FPGA: Recv ZSGSRD 35545
17-03-18 01:22:36.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:36.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:36.800 -07 000000590 INF: FPGA: Recv ZSGSRD 35540
17-03-18 01:22:36.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:36.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:36.810 -07 000000590 INF: FPGA: Recv ZSGSRD 35538
17-03-18 01:22:36.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:36.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:36.820 -07 000000461 INF: FPGA: Recv ZSGSRD 35542
17-03-18 01:22:36.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:36.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:36.830 -07 000000438 INF: FPGA: Recv ZSGSRD 35535
17-03-18 01:22:36.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:36.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:36.840 -07 000000590 INF: FPGA: Recv ZSGSRD 35547
17-03-18 01:22:36.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:36.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:36.850 -07 000000590 INF: FPGA: Recv ZSGSRD 35542
17-03-18 01:22:36.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:36.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:36.860 -07 000000438 INF: FPGA: Recv ZSGSRD 35538
17-03-18 01:22:36.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:36.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:36.870 -07 000000590 INF: FPGA: Recv ZSGSRD 35546
17-03-18 01:22:36.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:36.880 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:36.880 -07 000000590 INF: FPGA: Recv ZPIEZORD 31225
17-03-18 01:22:36.890 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:36.890 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.5 V.
17-03-18 01:22:36.890 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35541 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35541 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35535 (-167.7 uncal um), Max = 35547 (-167.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:22:36.890 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35541, posNoise = 6, negNoise = 6
17-03-18 01:22:36.890 -07 000000610 INF: Z Motor: After move to -0.168629, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:36.890 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:22:36.890 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:36.890 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:36.890 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:36.890 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:36.890 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:22:36.890 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:36.890 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:36.890 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:22:36.890 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:22:36.890 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:22:36.890 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:22:36.890 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:22:36.900 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:22:36.900 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:22:36.900 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:22:36.900 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:22:36.910 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 01:22:36.910 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:22:36.910 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 01:22:36.910 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:22:36.920 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37014 150\n [Camera]
17-03-18 01:22:37.120 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:22:37.250 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:22:37.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:22:37.510 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:22:37.510 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:22:37.510 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:37.510 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:22:37.510 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:22:37.510 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:37.510 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:37.510 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:22:37.520 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:37.520 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:22:37.700 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37014 775
17-03-18 01:22:37.940 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 428 ms.
17-03-18 01:22:37.940 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 428 ms.
17-03-18 01:22:37.940 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:37.940 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:22:37.940 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 424 ms.
17-03-18 01:22:37.940 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 426 ms.
17-03-18 01:22:37.940 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:37.950 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:22:37.950 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 438 ms.
17-03-18 01:22:37.950 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:37.950 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 442 ms.
17-03-18 01:22:38.040 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:22:38.040 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:22:38.040 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:38.040 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:22:38.040 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:22:38.040 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:38.050 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:38.050 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:22:38.050 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:38.050 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:22:38.230 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:22:38.230 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:22:38.230 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37014 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-18 01:22:38.230 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:22:38.230 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.168646275741461. ------
17-03-18 01:22:38.240 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:38.240 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17495 mm
17-03-18 01:22:38.240 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:22:38.240 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:38.240 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:22:38.240 -07 000000455 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 01:22:38.240 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38218, sync = True, waitForSettling = False)
17-03-18 01:22:38.240 -07 000000576 INF: Z Motor: Moving to -0.174951 mm, started at -0.168646 mm, distance = -6.30 um
17-03-18 01:22:38.250 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:38.250 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:38.250 -07 000000447 INF: FPGA: Recv YRDPOS 137977
17-03-18 01:22:38.260 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:22:38.260 -07 000000455 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:38.260 -07 000000576 INF: FPGA: Xmit ZDACW 38218\n [Z Motor]
17-03-18 01:22:38.260 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 01:22:38.260 -07 000000455 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:22:38.260 -07 000000455 INF: Y Motor: Moving 1346 steps-24
17-03-18 01:22:38.270 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:22:38.270 -07 000000576 INF: FPGA: 'ZDACW 38218' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:22:38.280 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:22:38.290 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:38.290 -07 000000590 INF: FPGA: Recv ZDACR 38218
17-03-18 01:22:38.300 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:22:38.300 -07 000000576 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 01:22:38.450 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.986717,
17-03-18 01:22:38.450 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:22:38.450 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:22:38.450 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:38.450 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:22:38.450 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:22:38.450 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:38.450 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:38.450 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:38.450 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 01:22:38.460 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:22:38.470 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:22:38.470 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:22:38.660 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 01:22:38.660 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 396 ms overall
17-03-18 01:22:38.700 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:38.700 -07 000000461 INF: FPGA: Recv YRDPOS 139683
17-03-18 01:22:38.710 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:38.710 -07 000000455 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:38.710 -07 000000455 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 01:22:38.710 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.842 mm, average velocity = 2.125 mm/sec
17-03-18 01:22:39.660 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:39.660 -07 000000561 INF: FPGA: Recv YRDPOS 139683
17-03-18 01:22:39.670 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:39.670 -07 000000455 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:39.690 -07 000000455 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:22:39.690 -07 000000455 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:22:39.690 -07 000000455 INF: Y Motor: Moved to 68.2046 after 1449 ms (table move)
17-03-18 01:22:39.690 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174951 mm (DAC = 38218)
17-03-18 01:22:39.700 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:39.700 -07 000000569 INF: FPGA: Recv ZSGSRD 36530
17-03-18 01:22:39.710 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:39.710 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:39.710 -07 000000561 INF: FPGA: Recv ZSGSRD 36521
17-03-18 01:22:39.720 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:39.720 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:39.720 -07 000000501 INF: FPGA: Recv ZSGSRD 36519
17-03-18 01:22:39.730 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:39.730 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:39.730 -07 000000479 INF: FPGA: Recv ZSGSRD 36522
17-03-18 01:22:39.740 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:39.740 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:39.740 -07 000000430 INF: FPGA: Recv ZSGSRD 36525
17-03-18 01:22:39.750 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:39.750 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:39.750 -07 000000479 INF: FPGA: Recv ZSGSRD 36529
17-03-18 01:22:39.760 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:39.760 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:39.760 -07 000000430 INF: FPGA: Recv ZSGSRD 36532
17-03-18 01:22:39.770 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:39.770 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:39.770 -07 000000479 INF: FPGA: Recv ZSGSRD 36527
17-03-18 01:22:39.780 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:39.780 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:39.780 -07 000000561 INF: FPGA: Recv ZSGSRD 36521
17-03-18 01:22:39.790 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:39.790 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:39.790 -07 000000561 INF: FPGA: Recv ZSGSRD 36523
17-03-18 01:22:39.800 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:39.800 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:39.800 -07 000000561 INF: FPGA: Recv ZPIEZORD 32561
17-03-18 01:22:39.810 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:39.810 -07 000000467 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.832 V. Piezo Error = -8.8 V.
17-03-18 01:22:39.810 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36525 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36524 (-174.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36519 (-174.0 uncal um), Max = 36532 (-174.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:22:39.810 -07 000000467 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36525, posNoise = 7, negNoise = 6
17-03-18 01:22:39.810 -07 000000467 INF: Z Motor: After move to -0.174951, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:39.810 -07 000000467 INF: Z Motor: Settle wait time = 1452 ms, measure time = 112 ms (allowed 150 ms), total time = 1564 ms
17-03-18 01:22:39.810 -07 000000467 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 01:22:39.850 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-18 01:22:39.850 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:22:39.850 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:39.850 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:39.850 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:39.850 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:39.850 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:22:39.850 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:39.850 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:39.860 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:22:39.860 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-18 01:22:39.860 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:22:39.870 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:22:39.870 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:22:39.880 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:22:39.920 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:22:40.220 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:22:40.220 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:22:40.220 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:22:40.220 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-18 01:22:40.260 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:22:40.260 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 01:22:40.260 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 386 ms overall
17-03-18 01:22:40.350 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:22:40.350 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:40.350 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:22:40.350 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:22:40.460 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:40.460 -07 000000561 INF: Autofocus start
17-03-18 01:22:40.460 -07 000000561 INF: MeasureProfile start
17-03-18 01:22:40.470 -07 000000561 INF: MeasureProfile done
17-03-18 01:22:40.470 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:22:40.470 -07 000000561 INF: Autofocus finished
17-03-18 01:22:40.470 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:40.470 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 15 ms overall
17-03-18 01:22:40.470 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:22:40.680 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:22:40.680 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 205 ms to get response, and 206 ms overall
17-03-18 01:22:40.680 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.174967700488954. ----------
17-03-18 01:22:40.690 -07 000000610 INF: Cycle	86	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:22:40.690 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36733, sync = True, waitForSettling = True)
17-03-18 01:22:40.690 -07 000000610 INF: Z Motor: Moving to -0.168153 mm, started at -0.174968 mm, distance = 6.81 um
17-03-18 01:22:40.690 -07 000000610 INF: FPGA: Xmit ZDACW 36733\n [Z Motor]
17-03-18 01:22:40.690 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 01:22:40.700 -07 000000610 INF: FPGA: 'ZDACW 36733' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:22:40.700 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:40.700 -07 000000561 INF: FPGA: Recv ZDACR 36733
17-03-18 01:22:40.710 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:40.710 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:22:40.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:40.860 -07 000000561 INF: FPGA: Recv ZSGSRD 35470
17-03-18 01:22:40.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:40.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:40.870 -07 000000561 INF: FPGA: Recv ZSGSRD 35464
17-03-18 01:22:40.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:40.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:40.880 -07 000000561 INF: FPGA: Recv ZSGSRD 35459
17-03-18 01:22:40.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:40.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:40.890 -07 000000561 INF: FPGA: Recv ZSGSRD 35463
17-03-18 01:22:40.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:40.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:40.900 -07 000000561 INF: FPGA: Recv ZSGSRD 35467
17-03-18 01:22:40.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:40.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:40.910 -07 000000561 INF: FPGA: Recv ZSGSRD 35463
17-03-18 01:22:40.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:40.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:40.920 -07 000000467 INF: FPGA: Recv ZSGSRD 35469
17-03-18 01:22:40.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:40.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:40.930 -07 000000561 INF: FPGA: Recv ZSGSRD 35468
17-03-18 01:22:40.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:40.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:40.940 -07 000000480 INF: FPGA: Recv ZSGSRD 35467
17-03-18 01:22:40.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:40.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:40.950 -07 000000561 INF: FPGA: Recv ZSGSRD 35467
17-03-18 01:22:40.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:40.960 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:40.960 -07 000000467 INF: FPGA: Recv ZPIEZORD 31169
17-03-18 01:22:40.970 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:40.970 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.605 V. Piezo Error = -9.5 V.
17-03-18 01:22:40.970 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35466 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35467 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35459 (-167.2 uncal um), Max = 35470 (-167.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:22:40.970 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35466, posNoise = 4, negNoise = 7
17-03-18 01:22:40.970 -07 000000610 INF: Z Motor: After move to -0.168153, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:40.970 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:22:40.970 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:40.970 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:40.970 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:40.970 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:40.970 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:22:40.970 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:40.970 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:22:40.970 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:22:40.970 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:40.970 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:22:40.970 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:22:40.970 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:22:40.970 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:22:40.970 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:22:40.970 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:22:40.970 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:22:40.980 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:22:40.980 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:22:40.980 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:22:40.980 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:22:40.990 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36910 150\n [Camera]
17-03-18 01:22:41.190 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 01:22:41.580 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:22:41.580 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:22:41.580 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:41.580 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:41.580 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:22:41.590 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:22:41.590 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:22:41.590 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:41.590 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:41.590 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:22:41.770 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36910 775
17-03-18 01:22:41.920 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:22:41.980 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:22:41.980 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:22:41.980 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:41.980 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:41.980 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:22:41.980 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:22:41.980 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:22:41.980 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:41.990 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:42.000 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:22:42.110 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:22:42.110 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:22:42.110 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:42.110 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:22:42.110 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:42.110 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:22:42.110 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:22:42.110 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:42.110 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:42.110 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:22:42.250 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:22:42.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:22:42.300 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:22:42.300 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:22:42.300 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36910 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-18 01:22:42.300 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:22:42.300 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168164459830829. ------
17-03-18 01:22:42.310 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:42.310 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17482 mm
17-03-18 01:22:42.310 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:22:42.310 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:22:42.310 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38190, sync = True, waitForSettling = False)
17-03-18 01:22:42.310 -07 000000447 INF: Z Motor: Moving to -0.174823 mm, started at -0.168164 mm, distance = -6.66 um
17-03-18 01:22:42.310 -07 000000561 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 01:22:42.310 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:42.320 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:22:42.320 -07 000000447 INF: FPGA: Xmit ZDACW 38190\n [Z Motor]
17-03-18 01:22:42.320 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:22:42.330 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:42.330 -07 000000447 INF: FPGA: 'ZDACW 38190' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:22:42.330 -07 000000467 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:22:42.340 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:22:42.340 -07 000000561 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:42.340 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:22:42.340 -07 000000561 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:22:42.340 -07 000000561 INF: Y Motor: Moving 1340 steps-16
17-03-18 01:22:42.350 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:42.350 -07 000000438 INF: FPGA: Recv ZDACR 38190
17-03-18 01:22:42.360 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:22:42.360 -07 000000447 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 01:22:42.360 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:22:42.510 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:22:42.520 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:22:42.520 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:42.520 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:22:42.520 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:22:42.520 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:42.520 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:42.520 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:22:42.520 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:42.530 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:22:42.540 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:22:42.540 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:22:42.730 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:22:42.730 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 395 ms overall
17-03-18 01:22:42.780 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:42.780 -07 000000569 INF: FPGA: Recv YRDPOS 141366
17-03-18 01:22:42.790 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:42.790 -07 000000561 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:42.790 -07 000000561 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 01:22:42.790 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-18 01:22:43.740 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:43.740 -07 000000569 INF: FPGA: Recv YRDPOS 141366
17-03-18 01:22:43.750 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:43.750 -07 000000561 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:43.770 -07 000000561 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:22:43.770 -07 000000561 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:22:43.770 -07 000000561 INF: Y Motor: Moved to 69.0264 after 1461 ms (table move)
17-03-18 01:22:43.780 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174823 mm (DAC = 38190)
17-03-18 01:22:43.780 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:44.720 -07 000000501 INF: FPGA: Recv ZSGSRD 36501
17-03-18 01:22:44.720 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 930 ms to get response, and 938 ms overall
17-03-18 01:22:44.720 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:44.720 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.981281,
17-03-18 01:22:44.720 -07 000000438 INF: FPGA: Recv ZSGSRD 36506
17-03-18 01:22:44.730 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:44.750 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:44.750 -07 000000569 INF: FPGA: Recv ZSGSRD 36507
17-03-18 01:22:44.760 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:22:44.760 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:44.760 -07 000000501 INF: FPGA: Recv ZSGSRD 36510
17-03-18 01:22:44.770 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:44.780 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:44.780 -07 000000501 INF: FPGA: Recv ZSGSRD 36511
17-03-18 01:22:44.790 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:22:44.800 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:44.800 -07 000000501 INF: FPGA: Recv ZSGSRD 36499
17-03-18 01:22:44.810 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:22:44.810 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:44.810 -07 000000501 INF: FPGA: Recv ZSGSRD 36503
17-03-18 01:22:44.820 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:44.820 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:44.820 -07 000000569 INF: FPGA: Recv ZSGSRD 36500
17-03-18 01:22:44.830 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:44.830 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:44.830 -07 000000569 INF: FPGA: Recv ZSGSRD 36508
17-03-18 01:22:44.840 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:44.840 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:44.840 -07 000000501 INF: FPGA: Recv ZSGSRD 36504
17-03-18 01:22:44.850 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:44.850 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:44.850 -07 000000501 INF: FPGA: Recv ZPIEZORD 32562
17-03-18 01:22:44.860 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:44.860 -07 000000455 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.827 V. Piezo Error = -8.7 V.
17-03-18 01:22:44.860 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36505 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36505 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36499 (-173.9 uncal um), Max = 36511 (-174.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:22:44.860 -07 000000455 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36505, posNoise = 6, negNoise = 6
17-03-18 01:22:44.860 -07 000000455 INF: Z Motor: After move to -0.174823, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:44.860 -07 000000455 INF: Z Motor: Settle wait time = 1466 ms, measure time = 1078 ms (allowed 150 ms), total time = 2544 ms
17-03-18 01:22:44.860 -07 000000455 INF: Z Motor: Warning: Actual position measuring time = 1078 ms, longer than max expected time of 150 ms
17-03-18 01:22:44.860 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2547 ms
17-03-18 01:22:44.860 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:22:44.860 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:44.860 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:44.860 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:22:44.860 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:44.860 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:44.860 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:44.860 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:22:44.860 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:22:44.870 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:22:44.870 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:22:44.870 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:22:44.870 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:22:44.880 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:22:44.920 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:22:45.220 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:22:45.220 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:22:45.220 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:22:45.230 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235741568, 0x0, 559484976) start.
17-03-18 01:22:45.260 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:22:45.260 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 01:22:45.260 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 387 ms overall
17-03-18 01:22:45.350 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235741568, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:22:45.350 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:45.350 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:22:45.350 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 01:22:45.460 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:45.460 -07 000000590 INF: Autofocus start
17-03-18 01:22:45.460 -07 000000590 INF: MeasureProfile start
17-03-18 01:22:45.460 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:45.470 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:22:45.470 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:22:45.470 -07 000000590 INF: MeasureProfile done
17-03-18 01:22:45.470 -07 000000590 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:22:45.470 -07 000000590 INF: Autofocus finished
17-03-18 01:22:45.670 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:22:45.670 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:22:45.670 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174839216246119. ----------
17-03-18 01:22:45.670 -07 000000610 INF: Cycle	86	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:22:45.680 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36670, sync = True, waitForSettling = True)
17-03-18 01:22:45.680 -07 000000610 INF: Z Motor: Moving to -0.167864 mm, started at -0.174839 mm, distance = 6.97 um
17-03-18 01:22:45.680 -07 000000610 INF: FPGA: Xmit ZDACW 36670\n [Z Motor]
17-03-18 01:22:45.680 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:22:45.690 -07 000000610 INF: FPGA: 'ZDACW 36670' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:45.690 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:45.690 -07 000000569 INF: FPGA: Recv ZDACR 36670
17-03-18 01:22:45.700 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:45.700 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:22:45.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:45.850 -07 000000479 INF: FPGA: Recv ZSGSRD 35420
17-03-18 01:22:45.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:45.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:45.860 -07 000000501 INF: FPGA: Recv ZSGSRD 35423
17-03-18 01:22:45.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:45.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:45.870 -07 000000590 INF: FPGA: Recv ZSGSRD 35418
17-03-18 01:22:45.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:45.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:45.880 -07 000000501 INF: FPGA: Recv ZSGSRD 35420
17-03-18 01:22:45.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:45.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:45.890 -07 000000569 INF: FPGA: Recv ZSGSRD 35419
17-03-18 01:22:45.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:45.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:45.900 -07 000000501 INF: FPGA: Recv ZSGSRD 35422
17-03-18 01:22:45.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:45.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:45.910 -07 000000569 INF: FPGA: Recv ZSGSRD 35427
17-03-18 01:22:45.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:45.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:45.920 -07 000000455 INF: FPGA: Recv ZSGSRD 35420
17-03-18 01:22:45.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:45.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:45.930 -07 000000591 INF: FPGA: Recv ZSGSRD 35421
17-03-18 01:22:45.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:45.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:45.940 -07 000000455 INF: FPGA: Recv ZSGSRD 35422
17-03-18 01:22:45.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:45.950 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:45.950 -07 000000479 INF: FPGA: Recv ZPIEZORD 31104
17-03-18 01:22:45.960 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:45.960 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.595 V. Piezo Error = -9.5 V.
17-03-18 01:22:45.960 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35421 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35420 (-167.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35418 (-167.0 uncal um), Max = 35427 (-167.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:22:45.960 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35421, posNoise = 6, negNoise = 3
17-03-18 01:22:45.960 -07 000000610 INF: Z Motor: After move to -0.167864, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:45.960 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:22:45.960 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:45.960 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:45.960 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:22:45.960 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:22:45.960 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:45.960 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:22:45.960 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:45.960 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:45.960 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:22:45.970 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:22:45.970 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:45.970 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:22:45.970 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:22:45.970 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:22:45.970 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:22:45.970 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:22:45.990 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:22:45.990 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:22:45.990 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:22:45.990 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:22:45.990 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36847 150\n [Camera]
17-03-18 01:22:46.190 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 01:22:46.580 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:22:46.580 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:22:46.580 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:46.580 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:46.580 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:22:46.580 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:22:46.580 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:22:46.580 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:46.580 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:46.580 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:22:46.770 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36847 775
17-03-18 01:22:46.920 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:22:46.980 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:22:46.980 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:22:46.980 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:46.980 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:22:46.980 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:22:46.980 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:46.980 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:46.980 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:22:46.990 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:46.990 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:22:47.110 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:22:47.110 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:22:47.110 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:47.110 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:47.110 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:22:47.110 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:22:47.110 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:22:47.110 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:47.110 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:47.110 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 01:22:47.250 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:22:47.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:22:47.300 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:22:47.300 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:22:47.300 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36847 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-18 01:22:47.300 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:22:47.300 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.16787537028445. ------
17-03-18 01:22:47.310 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:47.310 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17427 mm
17-03-18 01:22:47.310 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:22:47.310 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:47.310 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38069, sync = True, waitForSettling = False)
17-03-18 01:22:47.310 -07 000000447 INF: Z Motor: Moving to -0.174269 mm, started at -0.167875 mm, distance = -6.39 um
17-03-18 01:22:47.310 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:22:47.310 -07 000000576 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 01:22:47.320 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:47.320 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:47.320 -07 000000480 INF: FPGA: Recv YRDPOS 141367
17-03-18 01:22:47.330 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:22:47.330 -07 000000447 INF: FPGA: Xmit ZDACW 38069\n [Z Motor]
17-03-18 01:22:47.330 -07 000000576 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:47.330 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 01:22:47.330 -07 000000576 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:22:47.330 -07 000000576 INF: Y Motor: Moving 1353 steps-33
17-03-18 01:22:47.340 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:22:47.340 -07 000000447 INF: FPGA: 'ZDACW 38069' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:22:47.350 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:22:47.360 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:47.360 -07 000000569 INF: FPGA: Recv ZDACR 38069
17-03-18 01:22:47.370 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:22:47.370 -07 000000447 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 01:22:47.510 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:22:47.510 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:22:47.510 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:47.510 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:22:47.510 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:22:47.510 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:47.510 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:47.510 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:47.510 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:22:47.520 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:22:47.540 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:22:47.540 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:22:47.720 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:22:47.720 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:22:47.770 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:47.770 -07 000000467 INF: FPGA: Recv YRDPOS 143078
17-03-18 01:22:47.780 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:22:47.780 -07 000000576 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:47.780 -07 000000576 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 01:22:47.780 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.846 mm, average velocity = 2.142 mm/sec
17-03-18 01:22:48.730 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:49.720 -07 000000569 INF: FPGA: Recv YRDPOS 143079
17-03-18 01:22:49.720 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 980 ms to get response, and 990 ms overall
17-03-18 01:22:49.720 -07 000000576 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:49.750 -07 000000576 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:22:49.750 -07 000000576 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:22:49.750 -07 000000576 INF: Y Motor: Moved to 69.8628 after 2434 ms (table move)
17-03-18 01:22:49.750 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174269 mm (DAC = 38069)
17-03-18 01:22:49.760 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:49.760 -07 000000561 INF: FPGA: Recv ZSGSRD 36414
17-03-18 01:22:49.770 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:22:49.770 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:49.770 -07 000000561 INF: FPGA: Recv ZSGSRD 36419
17-03-18 01:22:49.780 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:49.780 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:49.780 -07 000000561 INF: FPGA: Recv ZSGSRD 36414
17-03-18 01:22:49.790 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:49.790 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:49.790 -07 000000569 INF: FPGA: Recv ZSGSRD 36424
17-03-18 01:22:49.800 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:49.810 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:49.810 -07 000000569 INF: FPGA: Recv ZSGSRD 36418
17-03-18 01:22:49.820 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:22:49.820 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:49.820 -07 000000569 INF: FPGA: Recv ZSGSRD 36414
17-03-18 01:22:49.830 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:49.830 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:49.830 -07 000000467 INF: FPGA: Recv ZSGSRD 36416
17-03-18 01:22:49.840 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:49.840 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:49.840 -07 000000569 INF: FPGA: Recv ZSGSRD 36421
17-03-18 01:22:49.850 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:49.850 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:49.850 -07 000000467 INF: FPGA: Recv ZSGSRD 36414
17-03-18 01:22:49.860 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:49.860 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:49.860 -07 000000569 INF: FPGA: Recv ZSGSRD 36416
17-03-18 01:22:49.870 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:49.870 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:49.870 -07 000000591 INF: FPGA: Recv ZPIEZORD 32454
17-03-18 01:22:49.880 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:49.880 -07 000000479 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.809 V. Piezo Error = -8.8 V.
17-03-18 01:22:49.880 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36417 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36416 (-173.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36414 (-173.4 uncal um), Max = 36424 (-173.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:22:49.880 -07 000000479 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36417, posNoise = 7, negNoise = 3
17-03-18 01:22:49.880 -07 000000479 INF: Z Motor: After move to -0.174269, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:49.880 -07 000000479 INF: Z Motor: Settle wait time = 2438 ms, measure time = 126 ms (allowed 150 ms), total time = 2564 ms
17-03-18 01:22:49.880 -07 000000479 INF: Z Motor: Waiting extra 24 ms after reading position to reach expected total of 150 ms
17-03-18 01:22:49.910 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2599 ms
17-03-18 01:22:49.910 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:22:49.910 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:49.910 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:49.910 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:49.910 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:49.910 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:22:49.910 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:49.910 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:49.910 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:22:49.910 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:22:49.920 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:22:49.930 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 18 ms.
17-03-18 01:22:49.930 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 22 ms.
17-03-18 01:22:49.940 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:22:49.980 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 01:22:50.120 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.964938,
17-03-18 01:22:50.280 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 01:22:50.280 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 01:22:50.290 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:22:50.290 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) start.
17-03-18 01:22:50.320 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:22:50.320 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 01:22:50.320 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 01:22:50.410 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:22:50.410 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:50.410 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:22:50.410 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:22:50.520 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:50.520 -07 000000461 INF: Autofocus start
17-03-18 01:22:50.520 -07 000000461 INF: MeasureProfile start
17-03-18 01:22:50.520 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:50.530 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:22:50.530 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:22:50.530 -07 000000461 INF: MeasureProfile done
17-03-18 01:22:50.530 -07 000000461 INF: X=48  Z correction [um]=0.1739867
17-03-18 01:22:50.530 -07 000000461 INF: Autofocus finished
17-03-18 01:22:50.730 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:22:50.730 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:22:50.730 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174273885577644. ----------
17-03-18 01:22:50.730 -07 000000610 INF: Cycle	86	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:22:50.740 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36620, sync = True, waitForSettling = True)
17-03-18 01:22:50.740 -07 000000610 INF: Z Motor: Moving to -0.167636 mm, started at -0.174274 mm, distance = 6.64 um
17-03-18 01:22:50.740 -07 000000610 INF: FPGA: Xmit ZDACW 36620\n [Z Motor]
17-03-18 01:22:50.740 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 01:22:50.750 -07 000000610 INF: FPGA: 'ZDACW 36620' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:50.750 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:50.750 -07 000000561 INF: FPGA: Recv ZDACR 36620
17-03-18 01:22:50.760 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:50.760 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:22:50.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:50.910 -07 000000561 INF: FPGA: Recv ZSGSRD 35385
17-03-18 01:22:50.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:50.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:50.920 -07 000000561 INF: FPGA: Recv ZSGSRD 35388
17-03-18 01:22:50.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:50.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:50.930 -07 000000561 INF: FPGA: Recv ZSGSRD 35386
17-03-18 01:22:50.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:50.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:50.940 -07 000000561 INF: FPGA: Recv ZSGSRD 35386
17-03-18 01:22:50.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:50.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:50.950 -07 000000480 INF: FPGA: Recv ZSGSRD 35381
17-03-18 01:22:50.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:50.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:50.960 -07 000000480 INF: FPGA: Recv ZSGSRD 35387
17-03-18 01:22:50.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:50.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:50.970 -07 000000561 INF: FPGA: Recv ZSGSRD 35389
17-03-18 01:22:50.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:50.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:50.980 -07 000000590 INF: FPGA: Recv ZSGSRD 35384
17-03-18 01:22:50.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:50.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:50.990 -07 000000569 INF: FPGA: Recv ZSGSRD 35380
17-03-18 01:22:51.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:51.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:51.000 -07 000000569 INF: FPGA: Recv ZSGSRD 35381
17-03-18 01:22:51.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:51.010 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:51.010 -07 000000569 INF: FPGA: Recv ZPIEZORD 31029
17-03-18 01:22:51.020 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:51.020 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.588 V. Piezo Error = -9.6 V.
17-03-18 01:22:51.020 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35385 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35386 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35380 (-166.7 uncal um), Max = 35389 (-166.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:22:51.020 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35385, posNoise = 4, negNoise = 5
17-03-18 01:22:51.020 -07 000000610 INF: Z Motor: After move to -0.167636, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:51.020 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:22:51.020 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:51.020 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:51.020 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:51.020 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:51.020 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:22:51.020 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:51.020 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:22:51.020 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:22:51.020 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:51.020 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:22:51.020 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:22:51.020 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:22:51.030 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:22:51.030 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:22:51.030 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 01:22:51.030 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:22:51.040 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:22:51.040 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:22:51.040 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:22:51.040 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:22:51.040 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36796 150\n [Camera]
17-03-18 01:22:51.240 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:22:51.630 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:22:51.630 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:22:51.630 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:51.640 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:51.640 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 01:22:51.640 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:22:51.640 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:22:51.640 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:51.640 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:51.640 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:22:51.830 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36796 775
17-03-18 01:22:51.980 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:22:52.020 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:22:52.020 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:22:52.020 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:52.030 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:22:52.030 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:22:52.030 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:52.030 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:52.030 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:52.030 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:22:52.040 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:22:52.170 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:22:52.170 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:22:52.170 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:52.170 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:52.170 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 01:22:52.170 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:22:52.170 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:22:52.170 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:52.170 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:52.170 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 01:22:52.250 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:22:52.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:22:52.360 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:22:52.360 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:22:52.360 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36796 150' command took 2 ms to send, 1301 ms to get response, and 1312 ms overall
17-03-18 01:22:52.360 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:22:52.360 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167644098647346. ------
17-03-18 01:22:52.360 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:52.360 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17404 mm
17-03-18 01:22:52.360 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:22:52.370 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:22:52.370 -07 000000455 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 01:22:52.370 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38019, sync = True, waitForSettling = False)
17-03-18 01:22:52.370 -07 000000480 INF: Z Motor: Moving to -0.174040 mm, started at -0.167644 mm, distance = -6.40 um
17-03-18 01:22:52.370 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:52.370 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 01:22:52.370 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:52.370 -07 000000467 INF: FPGA: Recv YRDPOS 143079
17-03-18 01:22:52.380 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:52.380 -07 000000455 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:52.380 -07 000000455 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:22:52.380 -07 000000455 INF: Y Motor: Moving 1344 steps-21
17-03-18 01:22:52.380 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:22:52.390 -07 000000480 INF: FPGA: Xmit ZDACW 38019\n [Z Motor]
17-03-18 01:22:52.390 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:22:52.400 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:22:52.400 -07 000000480 INF: FPGA: 'ZDACW 38019' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:22:52.410 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:52.410 -07 000000438 INF: FPGA: Recv ZDACR 38019
17-03-18 01:22:52.420 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:22:52.420 -07 000000480 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 01:22:52.570 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 01:22:52.570 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:22:52.570 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:52.570 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 01:22:52.570 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:22:52.570 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:52.580 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:52.580 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 01:22:52.580 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:52.580 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:22:52.580 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 01:22:52.580 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:22:52.780 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 01:22:52.780 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 01:22:52.820 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:52.820 -07 000000461 INF: FPGA: Recv YRDPOS 144768
17-03-18 01:22:52.830 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:22:52.830 -07 000000455 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:52.830 -07 000000455 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:22:52.830 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.840 mm, average velocity = 2.100 mm/sec
17-03-18 01:22:53.780 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:53.780 -07 000000480 INF: FPGA: Recv YRDPOS 144768
17-03-18 01:22:53.790 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:53.790 -07 000000455 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:53.810 -07 000000455 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:22:53.810 -07 000000455 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:22:53.810 -07 000000455 INF: Y Motor: Moved to 70.6875 after 1446 ms (table move)
17-03-18 01:22:53.820 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174040 mm (DAC = 38019)
17-03-18 01:22:53.820 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:53.820 -07 000000467 INF: FPGA: Recv ZSGSRD 36381
17-03-18 01:22:53.830 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:22:53.830 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:53.830 -07 000000467 INF: FPGA: Recv ZSGSRD 36378
17-03-18 01:22:53.840 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:53.840 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:53.840 -07 000000467 INF: FPGA: Recv ZSGSRD 36378
17-03-18 01:22:53.850 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:53.850 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:53.850 -07 000000467 INF: FPGA: Recv ZSGSRD 36379
17-03-18 01:22:53.860 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:53.860 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:53.860 -07 000000467 INF: FPGA: Recv ZSGSRD 36383
17-03-18 01:22:53.870 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:53.870 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:53.870 -07 000000591 INF: FPGA: Recv ZSGSRD 36388
17-03-18 01:22:53.880 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:53.880 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:53.880 -07 000000467 INF: FPGA: Recv ZSGSRD 36387
17-03-18 01:22:53.890 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:53.890 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:53.890 -07 000000467 INF: FPGA: Recv ZSGSRD 36368
17-03-18 01:22:53.900 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:53.900 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:53.900 -07 000000467 INF: FPGA: Recv ZSGSRD 36374
17-03-18 01:22:53.910 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:53.910 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:53.910 -07 000000576 INF: FPGA: Recv ZSGSRD 36380
17-03-18 01:22:53.920 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:53.920 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:53.920 -07 000000576 INF: FPGA: Recv ZPIEZORD 32389
17-03-18 01:22:53.930 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:53.930 -07 000000479 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.801 V. Piezo Error = -8.8 V.
17-03-18 01:22:53.930 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36380 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36380 (-173.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36368 (-173.1 uncal um), Max = 36388 (-173.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 01:22:53.930 -07 000000479 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36380, posNoise = 8, negNoise = 12
17-03-18 01:22:53.930 -07 000000479 INF: Z Motor: After move to -0.174040, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:53.930 -07 000000479 INF: Z Motor: Settle wait time = 1451 ms, measure time = 108 ms (allowed 150 ms), total time = 1559 ms
17-03-18 01:22:53.930 -07 000000479 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:22:53.980 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 01:22:53.980 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:22:53.980 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:53.980 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:53.980 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:53.980 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:53.980 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:22:53.980 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:53.980 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:22:53.980 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:22:53.990 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:22:53.990 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:22:53.990 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:22:53.990 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:22:54.000 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:22:54.040 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:22:54.340 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:22:54.340 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:22:54.340 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:22:54.340 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) start.
17-03-18 01:22:54.380 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:22:54.380 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:22:54.380 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 387 ms overall
17-03-18 01:22:54.470 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:22:54.470 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:54.470 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:22:54.470 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:22:54.480 -07 000000501 INF: Autofocus start
17-03-18 01:22:54.480 -07 000000501 INF: MeasureProfile start
17-03-18 01:22:54.480 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:54.480 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:54.490 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:22:54.490 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:22:54.490 -07 000000501 INF: MeasureProfile done
17-03-18 01:22:54.490 -07 000000501 INF: X=-96  Z correction [um]=-0.5732754
17-03-18 01:22:54.490 -07 000000501 INF: Autofocus finished
17-03-18 01:22:54.690 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:22:54.690 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 01:22:54.690 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.174036189728399. ----------
17-03-18 01:22:54.700 -07 000000610 INF: Cycle	86	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:22:54.700 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36406, sync = True, waitForSettling = True)
17-03-18 01:22:54.700 -07 000000610 INF: Z Motor: Moving to -0.166656 mm, started at -0.174036 mm, distance = 7.38 um
17-03-18 01:22:54.700 -07 000000610 INF: FPGA: Xmit ZDACW 36406\n [Z Motor]
17-03-18 01:22:54.700 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 01:22:54.710 -07 000000610 INF: FPGA: 'ZDACW 36406' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:22:54.710 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:54.710 -07 000000480 INF: FPGA: Recv ZDACR 36406
17-03-18 01:22:54.720 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:54.720 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:22:54.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:54.870 -07 000000479 INF: FPGA: Recv ZSGSRD 35231
17-03-18 01:22:54.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:54.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:54.880 -07 000000461 INF: FPGA: Recv ZSGSRD 35238
17-03-18 01:22:54.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:54.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:54.890 -07 000000480 INF: FPGA: Recv ZSGSRD 35234
17-03-18 01:22:54.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:54.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:54.900 -07 000000461 INF: FPGA: Recv ZSGSRD 35231
17-03-18 01:22:54.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:54.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:54.910 -07 000000479 INF: FPGA: Recv ZSGSRD 35237
17-03-18 01:22:54.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:54.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:54.920 -07 000000461 INF: FPGA: Recv ZSGSRD 35236
17-03-18 01:22:54.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:54.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:54.930 -07 000000561 INF: FPGA: Recv ZSGSRD 35235
17-03-18 01:22:54.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:54.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:54.940 -07 000000461 INF: FPGA: Recv ZSGSRD 35226
17-03-18 01:22:54.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:54.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:54.950 -07 000000591 INF: FPGA: Recv ZSGSRD 35236
17-03-18 01:22:54.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:54.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:54.960 -07 000000461 INF: FPGA: Recv ZSGSRD 35231
17-03-18 01:22:54.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:54.970 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:54.970 -07 000000569 INF: FPGA: Recv ZPIEZORD 30822
17-03-18 01:22:54.980 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:54.980 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.555 V. Piezo Error = -9.7 V.
17-03-18 01:22:54.980 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35234 (-165.8 uncal um), Error = 0.8 uncal um, Median = 35234 (-165.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35226 (-165.8 uncal um), Max = 35238 (-165.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:22:54.980 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35234, posNoise = 4, negNoise = 8
17-03-18 01:22:54.980 -07 000000610 INF: Z Motor: After move to -0.166656, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:54.980 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:22:54.980 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:54.980 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:54.980 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:54.980 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:54.980 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:22:54.980 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:54.980 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:22:54.980 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:22:54.980 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:54.980 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:22:54.980 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:22:54.980 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:22:54.990 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:22:54.990 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:22:54.990 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:22:54.990 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:22:55.000 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:22:55.000 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:22:55.000 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:22:55.000 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:22:55.010 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36583 150\n [Camera]
17-03-18 01:22:55.210 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:22:55.480 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.001704,
17-03-18 01:22:55.600 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:22:55.600 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:22:55.600 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:55.600 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:55.600 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 01:22:55.600 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:22:55.600 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:22:55.600 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:55.600 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:55.600 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 01:22:55.790 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36583 775
17-03-18 01:22:55.940 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:22:56.000 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:22:56.000 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:22:56.000 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:56.000 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:56.000 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:22:56.000 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:22:56.000 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:22:56.000 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:56.010 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:56.010 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:22:56.130 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:22:56.130 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:22:56.130 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:56.130 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:56.130 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 01:22:56.130 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:22:56.130 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:22:56.130 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:56.260 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:56.260 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:22:56.320 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:22:56.320 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:22:56.320 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36583 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:22:56.320 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:22:56.320 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.166674042613941. ------
17-03-18 01:22:56.320 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:56.320 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17323 mm
17-03-18 01:22:56.320 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:22:56.330 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:56.330 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:22:56.330 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:22:56.330 -07 000000569 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 01:22:56.330 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:22:56.330 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37842, sync = True, waitForSettling = False)
17-03-18 01:22:56.330 -07 000000467 INF: Z Motor: Moving to -0.173230 mm, started at -0.166674 mm, distance = -6.56 um
17-03-18 01:22:56.340 -07 000000467 INF: FPGA: Xmit ZDACW 37842\n [Z Motor]
17-03-18 01:22:56.340 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:22:56.350 -07 000000467 INF: FPGA: 'ZDACW 37842' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:22:56.350 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:56.350 -07 000000591 INF: FPGA: Recv YRDPOS 144769
17-03-18 01:22:56.360 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 01:22:56.360 -07 000000569 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:56.360 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:56.360 -07 000000590 INF: FPGA: Recv ZDACR 37842
17-03-18 01:22:56.360 -07 000000569 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:22:56.360 -07 000000569 INF: Y Motor: Moving 1351 steps-31
17-03-18 01:22:56.370 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:22:56.370 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:22:56.370 -07 000000467 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 01:22:56.530 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:22:56.530 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:22:56.530 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:56.530 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:22:56.530 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:22:56.530 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:22:56.530 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:22:56.640 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 01:22:56.640 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:22:56.640 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:56.650 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:22:56.650 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-18 01:22:56.750 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:22:56.750 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 386 ms overall
17-03-18 01:22:56.790 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:56.790 -07 000000479 INF: FPGA: Recv YRDPOS 146469
17-03-18 01:22:56.800 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:22:56.800 -07 000000569 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:56.800 -07 000000569 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:22:56.800 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.845 mm, average velocity = 2.189 mm/sec
17-03-18 01:22:57.250 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:22:57.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:22:57.750 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:22:57.750 -07 000000590 INF: FPGA: Recv YRDPOS 146469
17-03-18 01:22:57.760 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:57.760 -07 000000569 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:22:57.780 -07 000000569 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:22:57.780 -07 000000569 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:22:57.780 -07 000000569 INF: Y Motor: Moved to 71.5181 after 1454 ms (table move)
17-03-18 01:22:57.790 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173230 mm (DAC = 37842)
17-03-18 01:22:57.790 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:57.790 -07 000000569 INF: FPGA: Recv ZSGSRD 36254
17-03-18 01:22:57.800 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:22:57.800 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:57.800 -07 000000591 INF: FPGA: Recv ZSGSRD 36254
17-03-18 01:22:57.810 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:57.810 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:57.810 -07 000000430 INF: FPGA: Recv ZSGSRD 36255
17-03-18 01:22:57.820 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:57.820 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:57.820 -07 000000479 INF: FPGA: Recv ZSGSRD 36251
17-03-18 01:22:57.830 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:57.830 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:57.830 -07 000000569 INF: FPGA: Recv ZSGSRD 36252
17-03-18 01:22:57.840 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:57.840 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:57.840 -07 000000479 INF: FPGA: Recv ZSGSRD 36259
17-03-18 01:22:57.850 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:57.850 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:57.850 -07 000000590 INF: FPGA: Recv ZSGSRD 36257
17-03-18 01:22:57.860 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:57.860 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:57.860 -07 000000479 INF: FPGA: Recv ZSGSRD 36258
17-03-18 01:22:57.870 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:57.870 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:57.870 -07 000000569 INF: FPGA: Recv ZSGSRD 36265
17-03-18 01:22:57.880 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:57.880 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:57.880 -07 000000591 INF: FPGA: Recv ZSGSRD 36258
17-03-18 01:22:57.890 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:57.890 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:57.890 -07 000000467 INF: FPGA: Recv ZPIEZORD 32195
17-03-18 01:22:57.900 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:57.900 -07 000000501 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.774 V. Piezo Error = -9.0 V.
17-03-18 01:22:57.900 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36256 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36256 (-172.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36251 (-172.3 uncal um), Max = 36265 (-172.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:22:57.900 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36256, posNoise = 9, negNoise = 5
17-03-18 01:22:57.900 -07 000000501 INF: Z Motor: After move to -0.173230, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:57.900 -07 000000501 INF: Z Motor: Settle wait time = 1459 ms, measure time = 108 ms (allowed 150 ms), total time = 1567 ms
17-03-18 01:22:57.900 -07 000000501 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:22:57.950 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 01:22:57.950 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:22:57.950 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:57.950 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:57.960 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:22:57.960 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:57.960 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:57.960 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:22:57.960 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:22:57.960 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:57.960 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:22:57.960 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:22:57.970 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:22:57.970 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:22:57.970 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:22:58.020 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:22:58.320 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:22:58.320 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:22:58.320 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:22:58.320 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 01:22:58.360 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:22:58.360 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 01:22:58.360 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 385 ms overall
17-03-18 01:22:58.440 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:22:58.440 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:58.440 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:22:58.440 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:22:58.460 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:22:58.460 -07 000000479 INF: Autofocus start
17-03-18 01:22:58.460 -07 000000479 INF: MeasureProfile start
17-03-18 01:22:58.460 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:22:58.470 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:22:58.470 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:22:58.470 -07 000000479 INF: MeasureProfile done
17-03-18 01:22:58.470 -07 000000479 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:22:58.470 -07 000000479 INF: Autofocus finished
17-03-18 01:22:58.670 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:22:58.670 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:22:58.670 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.17323958742282. ----------
17-03-18 01:22:58.670 -07 000000610 INF: Cycle	86	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:22:58.680 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36375, sync = True, waitForSettling = True)
17-03-18 01:22:58.680 -07 000000610 INF: Z Motor: Moving to -0.166514 mm, started at -0.173240 mm, distance = 6.73 um
17-03-18 01:22:58.680 -07 000000610 INF: FPGA: Xmit ZDACW 36375\n [Z Motor]
17-03-18 01:22:58.680 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:22:58.690 -07 000000610 INF: FPGA: 'ZDACW 36375' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:22:58.690 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:22:58.690 -07 000000461 INF: FPGA: Recv ZDACR 36375
17-03-18 01:22:58.700 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:58.700 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:22:58.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:58.850 -07 000000430 INF: FPGA: Recv ZSGSRD 35220
17-03-18 01:22:58.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:22:58.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:58.860 -07 000000591 INF: FPGA: Recv ZSGSRD 35209
17-03-18 01:22:58.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:58.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:58.870 -07 000000467 INF: FPGA: Recv ZSGSRD 35209
17-03-18 01:22:58.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:58.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:58.880 -07 000000591 INF: FPGA: Recv ZSGSRD 35211
17-03-18 01:22:58.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:58.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:58.890 -07 000000455 INF: FPGA: Recv ZSGSRD 35214
17-03-18 01:22:58.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:58.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:58.900 -07 000000461 INF: FPGA: Recv ZSGSRD 35208
17-03-18 01:22:58.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:58.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:58.910 -07 000000467 INF: FPGA: Recv ZSGSRD 35208
17-03-18 01:22:58.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:58.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:58.920 -07 000000501 INF: FPGA: Recv ZSGSRD 35217
17-03-18 01:22:58.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:58.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:58.930 -07 000000467 INF: FPGA: Recv ZSGSRD 35216
17-03-18 01:22:58.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:58.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:22:58.940 -07 000000461 INF: FPGA: Recv ZSGSRD 35204
17-03-18 01:22:58.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:58.950 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:22:58.950 -07 000000590 INF: FPGA: Recv ZPIEZORD 30821
17-03-18 01:22:58.960 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:22:58.960 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.550 V. Piezo Error = -9.7 V.
17-03-18 01:22:58.960 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35212 (-165.7 uncal um), Error = 0.8 uncal um, Median = 35210 (-165.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35204 (-165.6 uncal um), Max = 35220 (-165.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:22:58.960 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35212, posNoise = 8, negNoise = 8
17-03-18 01:22:58.960 -07 000000610 INF: Z Motor: After move to -0.166514, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:22:58.960 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:22:58.960 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:22:58.960 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:22:58.960 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:22:58.960 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:22:58.960 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:22:58.960 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:22:58.960 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:22:58.960 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:22:58.960 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:22:58.960 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:22:58.960 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:22:58.960 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:22:58.970 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:22:58.970 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:22:58.970 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:22:58.970 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:22:58.980 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:22:58.980 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:22:58.980 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:22:58.980 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:22:58.980 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36552 150\n [Camera]
17-03-18 01:22:59.190 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 01:22:59.580 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:22:59.580 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:22:59.580 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:22:59.580 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:22:59.580 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:22:59.580 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:22:59.580 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:22:59.580 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:22:59.590 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:22:59.590 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:22:59.770 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36552 775
17-03-18 01:22:59.920 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:22:59.970 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 01:22:59.970 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:22:59.970 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:59.970 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:22:59.970 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:22:59.970 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:22:59.980 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:59.980 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:22:59.980 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:22:59.990 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:23:00.110 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:23:00.110 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:23:00.110 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:00.110 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:23:00.110 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:23:00.110 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:00.230 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:00.230 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 01:23:00.230 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:00.230 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:23:00.300 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:23:00.300 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:23:00.300 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36552 150' command took 2 ms to send, 1304 ms to get response, and 1316 ms overall
17-03-18 01:23:00.300 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:23:00.300 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.166532709946822. ------
17-03-18 01:23:00.300 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:00.300 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17292 mm
17-03-18 01:23:00.300 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:23:00.310 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 37774, sync = True, waitForSettling = False)
17-03-18 01:23:00.310 -07 000000591 INF: Z Motor: Moving to -0.172918 mm, started at -0.166533 mm, distance = -6.39 um
17-03-18 01:23:00.310 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:23:00.310 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:00.310 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:23:00.310 -07 000000430 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 01:23:00.310 -07 000000591 INF: FPGA: Xmit ZDACW 37774\n [Z Motor]
17-03-18 01:23:00.310 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:23:00.320 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:23:00.320 -07 000000591 INF: FPGA: 'ZDACW 37774' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:23:00.330 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:00.330 -07 000000467 INF: FPGA: Recv YRDPOS 146470
17-03-18 01:23:00.340 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:00.340 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:23:00.340 -07 000000430 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:00.340 -07 000000455 INF: FPGA: Recv ZDACR 37774
17-03-18 01:23:00.340 -07 000000430 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:23:00.340 -07 000000430 INF: Y Motor: Moving 1350 steps-30
17-03-18 01:23:00.350 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:23:00.350 -07 000000591 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 01:23:00.350 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:23:00.520 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:23:00.520 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 215 ms overall
17-03-18 01:23:00.630 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:23:00.630 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:23:00.630 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:00.630 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:23:00.630 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:23:00.630 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:00.630 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:00.630 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:00.630 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 01:23:00.640 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-18 01:23:00.720 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 01:23:00.720 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 01:23:00.770 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:00.770 -07 000000480 INF: FPGA: Recv YRDPOS 148171
17-03-18 01:23:00.780 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:00.780 -07 000000430 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:00.780 -07 000000430 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:23:00.780 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.845 mm, average velocity = 2.211 mm/sec
17-03-18 01:23:00.860 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.033041,
17-03-18 01:23:01.730 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:01.730 -07 000000438 INF: FPGA: Recv YRDPOS 148171
17-03-18 01:23:01.740 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:01.740 -07 000000430 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:01.760 -07 000000430 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:23:01.760 -07 000000430 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:23:01.760 -07 000000430 INF: Y Motor: Moved to 72.3491 after 1454 ms (table move)
17-03-18 01:23:01.770 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172918 mm (DAC = 37774)
17-03-18 01:23:01.770 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:01.770 -07 000000461 INF: FPGA: Recv ZSGSRD 36208
17-03-18 01:23:01.780 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:01.780 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:01.780 -07 000000438 INF: FPGA: Recv ZSGSRD 36208
17-03-18 01:23:01.790 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:01.790 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:01.790 -07 000000461 INF: FPGA: Recv ZSGSRD 36208
17-03-18 01:23:01.800 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:01.800 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:01.800 -07 000000438 INF: FPGA: Recv ZSGSRD 36209
17-03-18 01:23:01.810 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:01.810 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:01.810 -07 000000480 INF: FPGA: Recv ZSGSRD 36208
17-03-18 01:23:01.820 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:01.820 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:01.820 -07 000000461 INF: FPGA: Recv ZSGSRD 36207
17-03-18 01:23:01.830 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:01.830 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:01.830 -07 000000480 INF: FPGA: Recv ZSGSRD 36211
17-03-18 01:23:01.840 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:01.840 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:01.840 -07 000000438 INF: FPGA: Recv ZSGSRD 36207
17-03-18 01:23:01.850 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:01.850 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:01.850 -07 000000430 INF: FPGA: Recv ZSGSRD 36205
17-03-18 01:23:01.860 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:01.860 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:01.860 -07 000000479 INF: FPGA: Recv ZSGSRD 36210
17-03-18 01:23:01.870 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:01.870 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:01.870 -07 000000461 INF: FPGA: Recv ZPIEZORD 32155
17-03-18 01:23:01.880 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:01.880 -07 000000590 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.764 V. Piezo Error = -8.9 V.
17-03-18 01:23:01.880 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36208 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36208 (-172.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36205 (-172.0 uncal um), Max = 36211 (-172.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:23:01.880 -07 000000590 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36208, posNoise = 3, negNoise = 3
17-03-18 01:23:01.880 -07 000000590 INF: Z Motor: After move to -0.172918, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:01.880 -07 000000590 INF: Z Motor: Settle wait time = 1457 ms, measure time = 111 ms (allowed 150 ms), total time = 1568 ms
17-03-18 01:23:01.880 -07 000000590 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:23:01.920 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 01:23:01.920 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:23:01.920 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:01.920 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:01.920 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:01.920 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:23:01.920 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:01.920 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:01.920 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:01.920 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:23:01.930 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:23:01.930 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:23:01.940 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:23:01.940 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:23:01.940 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:23:01.990 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 01:23:02.250 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:23:02.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:23:02.290 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 01:23:02.290 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 01:23:02.290 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:23:02.290 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-18 01:23:02.320 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:23:02.320 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 01:23:02.320 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:23:02.410 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:23:02.410 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:02.410 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:23:02.410 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:23:02.420 -07 000000461 INF: Autofocus start
17-03-18 01:23:02.420 -07 000000461 INF: MeasureProfile start
17-03-18 01:23:02.420 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:02.420 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:02.430 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:02.430 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:23:02.430 -07 000000461 INF: MeasureProfile done
17-03-18 01:23:02.440 -07 000000461 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:23:02.440 -07 000000461 INF: Autofocus finished
17-03-18 01:23:02.630 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:23:02.630 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:23:02.630 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.172931225240016. ----------
17-03-18 01:23:02.630 -07 000000610 INF: Cycle	86	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:23:02.640 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36289, sync = True, waitForSettling = True)
17-03-18 01:23:02.640 -07 000000610 INF: Z Motor: Moving to -0.166120 mm, started at -0.172931 mm, distance = 6.81 um
17-03-18 01:23:02.640 -07 000000610 INF: FPGA: Xmit ZDACW 36289\n [Z Motor]
17-03-18 01:23:02.640 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 01:23:02.650 -07 000000610 INF: FPGA: 'ZDACW 36289' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:23:02.650 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:02.650 -07 000000590 INF: FPGA: Recv ZDACR 36289
17-03-18 01:23:02.660 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:02.660 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:23:02.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:02.810 -07 000000479 INF: FPGA: Recv ZSGSRD 35151
17-03-18 01:23:02.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:02.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:02.820 -07 000000501 INF: FPGA: Recv ZSGSRD 35151
17-03-18 01:23:02.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:02.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:02.830 -07 000000590 INF: FPGA: Recv ZSGSRD 35148
17-03-18 01:23:02.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:02.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:02.840 -07 000000480 INF: FPGA: Recv ZSGSRD 35153
17-03-18 01:23:02.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:02.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:02.850 -07 000000461 INF: FPGA: Recv ZSGSRD 35150
17-03-18 01:23:02.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:02.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:02.860 -07 000000430 INF: FPGA: Recv ZSGSRD 35149
17-03-18 01:23:02.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:02.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:02.870 -07 000000438 INF: FPGA: Recv ZSGSRD 35148
17-03-18 01:23:02.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:02.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:02.880 -07 000000430 INF: FPGA: Recv ZSGSRD 35148
17-03-18 01:23:02.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:02.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:02.890 -07 000000590 INF: FPGA: Recv ZSGSRD 35148
17-03-18 01:23:02.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:02.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:02.900 -07 000000501 INF: FPGA: Recv ZSGSRD 35150
17-03-18 01:23:02.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:02.910 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:02.910 -07 000000590 INF: FPGA: Recv ZPIEZORD 30762
17-03-18 01:23:02.920 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:02.920 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.537 V. Piezo Error = -9.7 V.
17-03-18 01:23:02.920 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35150 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35150 (-165.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35148 (-165.3 uncal um), Max = 35153 (-165.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:23:02.920 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35150, posNoise = 3, negNoise = 2
17-03-18 01:23:02.920 -07 000000610 INF: Z Motor: After move to -0.166120, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:02.920 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:23:02.920 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:02.920 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:02.920 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:23:02.920 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:02.920 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:23:02.920 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:23:02.920 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:02.920 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:02.920 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:23:02.920 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:23:02.920 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:23:02.920 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:02.920 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:23:02.930 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:23:02.930 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:23:02.930 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:23:02.940 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:23:02.940 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:23:02.940 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:23:02.940 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:23:02.940 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36466 150\n [Camera]
17-03-18 01:23:03.140 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:23:03.530 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:23:03.530 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:23:03.530 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:03.530 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:23:03.530 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:23:03.530 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:03.530 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:03.530 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:23:03.540 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:03.540 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:23:03.720 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36466 775
17-03-18 01:23:03.870 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:23:03.930 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:23:03.930 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:23:03.930 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:03.930 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:23:03.930 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:23:03.930 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:03.930 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:03.930 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:23:03.940 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:03.940 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:23:04.060 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:23:04.060 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:23:04.060 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:04.060 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:23:04.060 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:23:04.060 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:04.070 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:04.070 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:23:04.070 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:04.070 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:23:04.250 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:23:04.250 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:23:04.250 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36466 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-18 01:23:04.250 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:23:04.250 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166134408794033. ------
17-03-18 01:23:04.260 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:04.260 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17271 mm
17-03-18 01:23:04.260 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:23:04.260 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:23:04.260 -07 000000430 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 01:23:04.260 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:04.260 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37728, sync = True, waitForSettling = False)
17-03-18 01:23:04.260 -07 000000569 INF: Z Motor: Moving to -0.172708 mm, started at -0.166134 mm, distance = -6.57 um
17-03-18 01:23:04.270 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:04.270 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:04.270 -07 000000591 INF: FPGA: Recv YRDPOS 148171
17-03-18 01:23:04.280 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:23:04.280 -07 000000430 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:04.280 -07 000000430 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:23:04.280 -07 000000430 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:23:04.280 -07 000000569 INF: FPGA: Xmit ZDACW 37728\n [Z Motor]
17-03-18 01:23:04.280 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:23:04.290 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:23:04.290 -07 000000569 INF: FPGA: 'ZDACW 37728' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:23:04.300 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:23:04.310 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:04.310 -07 000000438 INF: FPGA: Recv ZDACR 37728
17-03-18 01:23:04.320 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:23:04.320 -07 000000569 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 01:23:04.470 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:23:04.470 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:23:04.470 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:04.470 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:23:04.470 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:23:04.470 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:04.470 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:04.470 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:23:04.470 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:04.480 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 01:23:04.490 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:23:04.490 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:23:04.670 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:23:04.670 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:23:04.720 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:04.720 -07 000000480 INF: FPGA: Recv YRDPOS 149863
17-03-18 01:23:04.730 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:04.730 -07 000000430 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:04.730 -07 000000430 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 01:23:04.730 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-18 01:23:05.680 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:05.680 -07 000000480 INF: FPGA: Recv YRDPOS 149863
17-03-18 01:23:05.690 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:05.690 -07 000000430 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:05.710 -07 000000430 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:23:05.710 -07 000000430 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:23:05.710 -07 000000430 INF: Y Motor: Moved to 73.1753 after 1451 ms (table move)
17-03-18 01:23:05.720 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172708 mm (DAC = 37728)
17-03-18 01:23:05.720 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:05.720 -07 000000430 INF: FPGA: Recv ZSGSRD 36177
17-03-18 01:23:05.730 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:05.730 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:05.730 -07 000000501 INF: FPGA: Recv ZSGSRD 36175
17-03-18 01:23:05.740 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:05.740 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:05.740 -07 000000461 INF: FPGA: Recv ZSGSRD 36180
17-03-18 01:23:05.750 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:05.750 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:05.750 -07 000000501 INF: FPGA: Recv ZSGSRD 36181
17-03-18 01:23:05.760 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:05.760 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:05.760 -07 000000461 INF: FPGA: Recv ZSGSRD 36175
17-03-18 01:23:05.770 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:05.770 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:05.770 -07 000000501 INF: FPGA: Recv ZSGSRD 36175
17-03-18 01:23:05.780 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:05.780 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:05.780 -07 000000591 INF: FPGA: Recv ZSGSRD 36171
17-03-18 01:23:05.790 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:05.790 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:05.790 -07 000000591 INF: FPGA: Recv ZSGSRD 36179
17-03-18 01:23:05.800 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:23:05.800 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:05.800 -07 000000591 INF: FPGA: Recv ZSGSRD 36172
17-03-18 01:23:05.810 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:05.810 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:05.810 -07 000000591 INF: FPGA: Recv ZSGSRD 36172
17-03-18 01:23:05.820 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:05.820 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:05.820 -07 000000591 INF: FPGA: Recv ZPIEZORD 32160
17-03-18 01:23:05.830 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:05.830 -07 000000479 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.757 V. Piezo Error = -8.9 V.
17-03-18 01:23:05.830 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36176 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36175 (-171.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36171 (-171.8 uncal um), Max = 36181 (-171.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:23:05.830 -07 000000479 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36176, posNoise = 5, negNoise = 5
17-03-18 01:23:05.830 -07 000000479 INF: Z Motor: After move to -0.172708, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:05.830 -07 000000479 INF: Z Motor: Settle wait time = 1453 ms, measure time = 110 ms (allowed 150 ms), total time = 1563 ms
17-03-18 01:23:05.830 -07 000000479 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:23:05.870 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 01:23:05.870 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:23:05.870 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:05.870 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:05.870 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:05.870 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:05.870 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:23:05.870 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:05.870 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:05.870 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:23:05.880 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:23:05.880 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:23:05.880 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:23:05.880 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:23:05.890 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:23:05.930 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:23:06.230 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:23:06.230 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:23:06.230 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:23:06.340 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:23:06.340 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 01:23:06.340 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 447 ms to get response, and 455 ms overall
17-03-18 01:23:06.340 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.041198,
17-03-18 01:23:06.340 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) start.
17-03-18 01:23:06.460 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:23:06.460 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:06.460 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:23:06.460 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 227 ms.
17-03-18 01:23:06.540 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:06.540 -07 000000479 INF: Autofocus start
17-03-18 01:23:06.540 -07 000000479 INF: MeasureProfile start
17-03-18 01:23:06.540 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:06.550 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:06.550 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:23:06.550 -07 000000479 INF: MeasureProfile done
17-03-18 01:23:06.550 -07 000000479 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:23:06.550 -07 000000479 INF: Autofocus finished
17-03-18 01:23:06.750 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:23:06.750 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:23:06.750 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.172725650451479. ----------
17-03-18 01:23:06.750 -07 000000610 INF: Cycle	86	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:23:06.760 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36208, sync = True, waitForSettling = True)
17-03-18 01:23:06.760 -07 000000610 INF: Z Motor: Moving to -0.165750 mm, started at -0.172726 mm, distance = 6.98 um
17-03-18 01:23:06.760 -07 000000610 INF: FPGA: Xmit ZDACW 36208\n [Z Motor]
17-03-18 01:23:06.760 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:23:06.770 -07 000000610 INF: FPGA: 'ZDACW 36208' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:06.770 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:06.770 -07 000000467 INF: FPGA: Recv ZDACR 36208
17-03-18 01:23:06.780 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:06.780 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:23:06.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:06.930 -07 000000455 INF: FPGA: Recv ZSGSRD 35091
17-03-18 01:23:06.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:06.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:06.940 -07 000000479 INF: FPGA: Recv ZSGSRD 35092
17-03-18 01:23:06.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:06.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:06.950 -07 000000467 INF: FPGA: Recv ZSGSRD 35095
17-03-18 01:23:06.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:06.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:06.960 -07 000000455 INF: FPGA: Recv ZSGSRD 35097
17-03-18 01:23:06.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:06.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:06.970 -07 000000501 INF: FPGA: Recv ZSGSRD 35094
17-03-18 01:23:06.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:06.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:06.980 -07 000000455 INF: FPGA: Recv ZSGSRD 35088
17-03-18 01:23:06.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:06.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:06.990 -07 000000455 INF: FPGA: Recv ZSGSRD 35093
17-03-18 01:23:07.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:07.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:07.000 -07 000000467 INF: FPGA: Recv ZSGSRD 35091
17-03-18 01:23:07.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:07.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:07.010 -07 000000467 INF: FPGA: Recv ZSGSRD 35096
17-03-18 01:23:07.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:07.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:07.020 -07 000000591 INF: FPGA: Recv ZSGSRD 35093
17-03-18 01:23:07.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:07.030 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:07.030 -07 000000591 INF: FPGA: Recv ZPIEZORD 30681
17-03-18 01:23:07.040 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:23:07.040 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.525 V. Piezo Error = -9.7 V.
17-03-18 01:23:07.040 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35093 (-164.9 uncal um), Error = 0.8 uncal um, Median = 35093 (-164.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35088 (-164.9 uncal um), Max = 35097 (-164.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:23:07.040 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35093, posNoise = 4, negNoise = 5
17-03-18 01:23:07.040 -07 000000610 INF: Z Motor: After move to -0.165750, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:07.040 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:23:07.040 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:07.040 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:07.040 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:07.040 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:07.040 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:23:07.040 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:07.040 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:23:07.040 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:23:07.040 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:23:07.040 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:23:07.040 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:23:07.040 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:23:07.040 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:23:07.040 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:23:07.040 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:23:07.040 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:23:07.060 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:23:07.060 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:23:07.060 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 01:23:07.060 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:23:07.060 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36385 150\n [Camera]
17-03-18 01:23:07.250 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:23:07.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:23:07.260 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:23:07.650 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:23:07.650 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:23:07.650 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:07.650 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:23:07.650 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:23:07.650 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:07.660 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:07.660 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-18 01:23:07.660 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:07.660 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:23:07.840 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36385 775
17-03-18 01:23:07.990 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:23:08.040 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:23:08.040 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:23:08.040 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:08.040 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:08.040 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 01:23:08.040 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:23:08.040 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:08.050 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:08.050 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:23:08.050 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:23:08.180 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:23:08.180 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:23:08.180 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:08.180 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:23:08.180 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:23:08.190 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:08.300 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:08.300 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:23:08.300 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:08.300 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:23:08.370 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:23:08.370 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:23:08.370 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36385 150' command took 2 ms to send, 1308 ms to get response, and 1312 ms overall
17-03-18 01:23:08.380 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:23:08.380 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.165768228701952. ------
17-03-18 01:23:08.380 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17218 mm
17-03-18 01:23:08.380 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:23:08.380 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:08.380 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:23:08.380 -07 000000501 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 01:23:08.380 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:08.380 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37614, sync = True, waitForSettling = False)
17-03-18 01:23:08.380 -07 000000576 INF: Z Motor: Moving to -0.172186 mm, started at -0.165768 mm, distance = -6.42 um
17-03-18 01:23:08.390 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:08.390 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:08.390 -07 000000480 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:23:08.400 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:23:08.400 -07 000000501 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:08.400 -07 000000576 INF: FPGA: Xmit ZDACW 37614\n [Z Motor]
17-03-18 01:23:08.400 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:23:08.400 -07 000000501 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:23:08.400 -07 000000501 INF: Y Motor: Moving 1355 steps-35
17-03-18 01:23:08.410 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:23:08.410 -07 000000576 INF: FPGA: 'ZDACW 37614' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:23:08.420 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:23:08.430 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:08.430 -07 000000467 INF: FPGA: Recv ZDACR 37614
17-03-18 01:23:08.440 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:23:08.440 -07 000000576 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 01:23:08.610 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:23:08.610 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:23:08.690 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:23:08.690 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:23:08.690 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:08.700 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:23:08.700 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:23:08.700 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:08.700 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:08.700 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:08.700 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 01:23:08.710 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-18 01:23:08.790 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:23:08.790 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 394 ms overall
17-03-18 01:23:08.830 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:08.830 -07 000000455 INF: FPGA: Recv YRDPOS 151567
17-03-18 01:23:08.840 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:23:08.840 -07 000000501 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:08.840 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:23:08.840 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.847 mm, average velocity = 2.151 mm/sec
17-03-18 01:23:09.790 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:09.790 -07 000000590 INF: FPGA: Recv YRDPOS 151567
17-03-18 01:23:09.800 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:09.800 -07 000000501 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:09.810 -07 000000501 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:23:09.810 -07 000000501 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:23:09.810 -07 000000501 INF: Y Motor: Moved to 74.0073 after 1433 ms (table move)
17-03-18 01:23:09.820 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172186 mm (DAC = 37614)
17-03-18 01:23:09.820 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:09.820 -07 000000501 INF: FPGA: Recv ZSGSRD 36099
17-03-18 01:23:09.830 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:09.830 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:09.830 -07 000000501 INF: FPGA: Recv ZSGSRD 36091
17-03-18 01:23:09.840 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:09.840 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:09.840 -07 000000480 INF: FPGA: Recv ZSGSRD 36093
17-03-18 01:23:09.850 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:09.850 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:09.850 -07 000000591 INF: FPGA: Recv ZSGSRD 36092
17-03-18 01:23:09.860 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:09.860 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:09.860 -07 000000591 INF: FPGA: Recv ZSGSRD 36099
17-03-18 01:23:09.870 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:09.870 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:09.870 -07 000000591 INF: FPGA: Recv ZSGSRD 36094
17-03-18 01:23:09.880 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:09.880 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:09.880 -07 000000561 INF: FPGA: Recv ZSGSRD 36097
17-03-18 01:23:09.890 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:09.890 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:09.890 -07 000000561 INF: FPGA: Recv ZSGSRD 36091
17-03-18 01:23:09.900 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:09.900 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:09.900 -07 000000561 INF: FPGA: Recv ZSGSRD 36086
17-03-18 01:23:09.910 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:09.910 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:09.910 -07 000000461 INF: FPGA: Recv ZSGSRD 36095
17-03-18 01:23:09.920 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:09.920 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:09.920 -07 000000461 INF: FPGA: Recv ZPIEZORD 32018
17-03-18 01:23:09.930 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:09.930 -07 000000479 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.740 V. Piezo Error = -9.0 V.
17-03-18 01:23:09.930 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36094 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36094 (-171.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36086 (-171.3 uncal um), Max = 36099 (-171.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:23:09.930 -07 000000479 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36094, posNoise = 5, negNoise = 8
17-03-18 01:23:09.930 -07 000000479 INF: Z Motor: After move to -0.172186, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:09.930 -07 000000479 INF: Z Motor: Settle wait time = 1435 ms, measure time = 108 ms (allowed 150 ms), total time = 1543 ms
17-03-18 01:23:09.930 -07 000000479 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:23:09.980 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 01:23:09.980 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:23:09.980 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:09.980 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:09.980 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:09.980 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:09.980 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:23:09.980 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:09.980 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:09.980 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:23:09.990 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:23:09.990 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:23:10.000 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:23:10.000 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:23:10.000 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:23:10.040 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:23:10.340 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:23:10.340 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:23:10.340 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:23:10.340 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 01:23:10.380 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:23:10.380 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:23:10.380 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:23:10.460 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:23:10.460 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:10.460 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:23:10.460 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:23:10.480 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:10.480 -07 000000479 INF: Autofocus start
17-03-18 01:23:10.480 -07 000000479 INF: MeasureProfile start
17-03-18 01:23:10.480 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:10.490 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:23:10.490 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:23:10.490 -07 000000479 INF: MeasureProfile done
17-03-18 01:23:10.490 -07 000000479 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:23:10.490 -07 000000479 INF: Autofocus finished
17-03-18 01:23:10.690 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:23:10.690 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 01:23:10.690 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.172198865055855. ----------
17-03-18 01:23:10.690 -07 000000610 INF: Cycle	86	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:23:10.700 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36111, sync = True, waitForSettling = True)
17-03-18 01:23:10.700 -07 000000610 INF: Z Motor: Moving to -0.165306 mm, started at -0.172199 mm, distance = 6.89 um
17-03-18 01:23:10.700 -07 000000610 INF: FPGA: Xmit ZDACW 36111\n [Z Motor]
17-03-18 01:23:10.700 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 01:23:10.710 -07 000000610 INF: FPGA: 'ZDACW 36111' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:23:10.710 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:10.710 -07 000000479 INF: FPGA: Recv ZDACR 36111
17-03-18 01:23:10.720 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:10.720 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:23:10.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:10.870 -07 000000461 INF: FPGA: Recv ZSGSRD 35022
17-03-18 01:23:10.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:10.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:10.880 -07 000000461 INF: FPGA: Recv ZSGSRD 35025
17-03-18 01:23:10.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:10.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:10.890 -07 000000561 INF: FPGA: Recv ZSGSRD 35020
17-03-18 01:23:10.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:10.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:10.900 -07 000000461 INF: FPGA: Recv ZSGSRD 35024
17-03-18 01:23:10.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:10.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:10.910 -07 000000479 INF: FPGA: Recv ZSGSRD 35023
17-03-18 01:23:10.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:10.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:10.920 -07 000000461 INF: FPGA: Recv ZSGSRD 35026
17-03-18 01:23:10.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:10.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:10.930 -07 000000461 INF: FPGA: Recv ZSGSRD 35024
17-03-18 01:23:10.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:10.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:10.940 -07 000000461 INF: FPGA: Recv ZSGSRD 35021
17-03-18 01:23:10.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:10.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:10.950 -07 000000479 INF: FPGA: Recv ZSGSRD 35021
17-03-18 01:23:10.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:10.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:10.970 -07 000000438 INF: FPGA: Recv ZSGSRD 35028
17-03-18 01:23:10.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:23:10.980 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:10.980 -07 000000461 INF: FPGA: Recv ZPIEZORD 30615
17-03-18 01:23:10.990 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:10.990 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.510 V. Piezo Error = -9.7 V.
17-03-18 01:23:10.990 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35023 (-164.5 uncal um), Error = 0.9 uncal um, Median = 35024 (-164.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35020 (-164.4 uncal um), Max = 35028 (-164.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:23:10.990 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35023, posNoise = 5, negNoise = 3
17-03-18 01:23:10.990 -07 000000610 INF: Z Motor: After move to -0.165306, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:10.990 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 01:23:10.990 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:10.990 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:10.990 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:10.990 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:23:10.990 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:10.990 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:23:10.990 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:23:10.990 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:10.990 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:23:10.990 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:23:10.990 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-18 01:23:10.990 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:23:11.000 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:23:11.000 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:23:11.000 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:23:11.000 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:23:11.010 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:23:11.010 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:23:11.010 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:23:11.010 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:23:11.010 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36287 150\n [Camera]
17-03-18 01:23:11.210 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:23:11.600 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:23:11.600 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:23:11.600 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:11.600 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:23:11.600 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:23:11.600 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:11.600 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:11.600 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:23:11.610 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:11.610 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:23:11.700 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.016692,
17-03-18 01:23:11.790 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36287 775
17-03-18 01:23:11.940 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:23:12.000 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:23:12.000 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:23:12.000 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:12.000 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:12.000 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:23:12.000 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:23:12.000 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:23:12.000 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:12.010 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:12.010 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:23:12.130 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:23:12.130 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:23:12.130 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:12.130 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:23:12.130 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:23:12.130 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:12.140 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:12.140 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:23:12.140 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:12.140 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:23:12.250 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:23:12.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:23:12.320 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:23:12.320 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:23:12.320 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36287 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-18 01:23:12.320 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:23:12.320 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.165318533852029. ------
17-03-18 01:23:12.330 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:12.330 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17117 mm
17-03-18 01:23:12.330 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:23:12.330 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:12.330 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37393, sync = True, waitForSettling = False)
17-03-18 01:23:12.330 -07 000000569 INF: Z Motor: Moving to -0.171174 mm, started at -0.165319 mm, distance = -5.86 um
17-03-18 01:23:12.330 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:23:12.330 -07 000000591 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 01:23:12.340 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:12.340 -07 000000569 INF: FPGA: Xmit ZDACW 37393\n [Z Motor]
17-03-18 01:23:12.340 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:23:12.350 -07 000000569 INF: FPGA: 'ZDACW 37393' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:23:12.350 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:12.350 -07 000000561 INF: FPGA: Recv YRDPOS 151568
17-03-18 01:23:12.360 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:23:12.360 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 01:23:12.360 -07 000000591 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:12.360 -07 000000591 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:23:12.360 -07 000000591 INF: Y Motor: Moving 1352 steps-31
17-03-18 01:23:12.370 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:12.370 -07 000000479 INF: FPGA: Recv ZDACR 37393
17-03-18 01:23:12.380 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 01:23:12.380 -07 000000569 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 01:23:12.380 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:23:12.540 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:23:12.540 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:23:12.540 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:12.540 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:23:12.540 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:23:12.540 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:12.540 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:12.540 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:23:12.540 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:12.550 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:23:12.560 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:23:12.560 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:23:12.750 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 01:23:12.750 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:23:12.780 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:12.780 -07 000000576 INF: FPGA: Recv YRDPOS 153254
17-03-18 01:23:12.790 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:23:12.790 -07 000000591 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:12.790 -07 000000591 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 01:23:12.790 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-18 01:23:13.740 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:13.740 -07 000000501 INF: FPGA: Recv YRDPOS 153254
17-03-18 01:23:13.750 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:13.750 -07 000000591 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:13.760 -07 000000591 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:23:13.760 -07 000000591 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:23:13.760 -07 000000591 INF: Y Motor: Moved to 74.8311 after 1428 ms (table move)
17-03-18 01:23:13.770 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171174 mm (DAC = 37393)
17-03-18 01:23:13.770 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:13.770 -07 000000569 INF: FPGA: Recv ZSGSRD 35940
17-03-18 01:23:13.780 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:23:13.780 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:13.780 -07 000000480 INF: FPGA: Recv ZSGSRD 35928
17-03-18 01:23:13.790 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:13.790 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:13.790 -07 000000480 INF: FPGA: Recv ZSGSRD 35934
17-03-18 01:23:13.800 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:13.800 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:13.800 -07 000000480 INF: FPGA: Recv ZSGSRD 35931
17-03-18 01:23:13.810 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:13.810 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:13.810 -07 000000480 INF: FPGA: Recv ZSGSRD 35942
17-03-18 01:23:13.820 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:13.820 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:13.820 -07 000000480 INF: FPGA: Recv ZSGSRD 35938
17-03-18 01:23:13.830 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:13.830 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:13.830 -07 000000480 INF: FPGA: Recv ZSGSRD 35940
17-03-18 01:23:13.840 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:13.840 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:13.840 -07 000000480 INF: FPGA: Recv ZSGSRD 35943
17-03-18 01:23:13.850 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:13.850 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:13.850 -07 000000480 INF: FPGA: Recv ZSGSRD 35934
17-03-18 01:23:13.860 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:13.860 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:13.860 -07 000000480 INF: FPGA: Recv ZSGSRD 35938
17-03-18 01:23:13.870 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:13.870 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:13.870 -07 000000480 INF: FPGA: Recv ZPIEZORD 31863
17-03-18 01:23:13.880 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:13.880 -07 000000461 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -9.0 V.
17-03-18 01:23:13.880 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35937 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35938 (-170.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35928 (-170.3 uncal um), Max = 35943 (-170.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:23:13.880 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35937, posNoise = 6, negNoise = 9
17-03-18 01:23:13.880 -07 000000461 INF: Z Motor: After move to -0.171174, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:13.880 -07 000000461 INF: Z Motor: Settle wait time = 1433 ms, measure time = 110 ms (allowed 150 ms), total time = 1543 ms
17-03-18 01:23:13.880 -07 000000461 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:23:13.920 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-18 01:23:13.920 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:23:13.920 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:13.920 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:13.920 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:13.920 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:13.920 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:23:13.920 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:13.930 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:13.930 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:23:13.930 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:23:13.930 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:23:13.940 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:23:13.940 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:23:13.940 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:23:13.980 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:23:14.280 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:23:14.280 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:23:14.280 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:23:14.290 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) start.
17-03-18 01:23:14.320 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:23:14.320 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:23:14.320 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:23:14.400 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:23:14.400 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:14.400 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:23:14.400 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:23:14.420 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:14.420 -07 000000480 INF: Autofocus start
17-03-18 01:23:14.420 -07 000000480 INF: MeasureProfile start
17-03-18 01:23:14.430 -07 000000480 INF: MeasureProfile done
17-03-18 01:23:14.430 -07 000000480 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:23:14.430 -07 000000480 INF: Autofocus finished
17-03-18 01:23:14.440 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:14.440 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 10 ms to get response, and 17 ms overall
17-03-18 01:23:14.440 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:23:14.640 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:23:14.640 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:23:14.640 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171190263749598. ----------
17-03-18 01:23:14.640 -07 000000610 INF: Cycle	86	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:23:14.650 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35925, sync = True, waitForSettling = True)
17-03-18 01:23:14.650 -07 000000610 INF: Z Motor: Moving to -0.164454 mm, started at -0.171190 mm, distance = 6.74 um
17-03-18 01:23:14.650 -07 000000610 INF: FPGA: Xmit ZDACW 35925\n [Z Motor]
17-03-18 01:23:14.650 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:23:14.660 -07 000000610 INF: FPGA: 'ZDACW 35925' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:23:14.660 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:14.660 -07 000000480 INF: FPGA: Recv ZDACR 35925
17-03-18 01:23:14.670 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:14.670 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:23:14.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:14.820 -07 000000480 INF: FPGA: Recv ZSGSRD 34892
17-03-18 01:23:14.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:14.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:14.830 -07 000000480 INF: FPGA: Recv ZSGSRD 34888
17-03-18 01:23:14.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:14.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:14.840 -07 000000590 INF: FPGA: Recv ZSGSRD 34891
17-03-18 01:23:14.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:14.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:14.850 -07 000000461 INF: FPGA: Recv ZSGSRD 34894
17-03-18 01:23:14.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:14.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:14.860 -07 000000590 INF: FPGA: Recv ZSGSRD 34888
17-03-18 01:23:14.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:14.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:14.870 -07 000000467 INF: FPGA: Recv ZSGSRD 34890
17-03-18 01:23:14.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:14.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:14.880 -07 000000430 INF: FPGA: Recv ZSGSRD 34886
17-03-18 01:23:14.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:14.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:14.890 -07 000000467 INF: FPGA: Recv ZSGSRD 34891
17-03-18 01:23:14.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:14.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:14.900 -07 000000467 INF: FPGA: Recv ZSGSRD 34899
17-03-18 01:23:14.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:14.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:14.910 -07 000000461 INF: FPGA: Recv ZSGSRD 34891
17-03-18 01:23:14.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:14.920 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:14.920 -07 000000461 INF: FPGA: Recv ZPIEZORD 30502
17-03-18 01:23:14.930 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:14.930 -07 000000610 INF: Z Motor: Piezo is near 45.2 V (nominally 0 to 100 V), expect near 54.8 V, since DAC is at 5.482 V. Piezo Error = -9.7 V.
17-03-18 01:23:14.930 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.5 um, Read 10 ADC samples: Avg = 34891 (-163.6 uncal um), Error = 0.8 uncal um, Median = 34891 (-163.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 34886 (-163.6 uncal um), Max = 34899 (-163.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:23:14.930 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34891, posNoise = 8, negNoise = 5
17-03-18 01:23:14.930 -07 000000610 INF: Z Motor: After move to -0.164454, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:14.930 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:23:14.930 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:14.930 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:14.930 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:23:14.930 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:23:14.930 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:14.930 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:14.930 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:23:14.930 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:23:14.930 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:23:14.930 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:14.930 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:14.930 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:23:14.930 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:23:14.930 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:23:14.940 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:23:14.940 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:23:14.950 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 01:23:14.950 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:23:14.950 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:23:14.950 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:23:14.950 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36102 150\n [Camera]
17-03-18 01:23:15.150 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:23:15.540 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:23:15.540 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:23:15.550 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:15.550 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:15.550 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:23:15.550 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:23:15.550 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:23:15.550 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:15.550 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:15.550 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:23:15.740 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36102 775
17-03-18 01:23:15.890 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:23:15.940 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:23:15.940 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:23:15.940 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:15.950 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:23:15.950 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:15.950 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:23:15.950 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:23:15.950 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:15.950 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:15.960 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:23:16.080 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:23:16.080 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:23:16.080 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:16.080 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:16.080 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:23:16.080 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:23:16.080 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:23:16.080 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:16.080 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:16.080 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:23:16.270 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:23:16.270 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:23:16.270 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36102 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:23:16.480 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:23:16.480 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:23:16.480 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:16.480 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:23:16.480 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:23:16.480 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:16.490 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:16.490 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:23:16.490 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:23:16.490 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:23:16.490 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:23:16.530 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 01:23:16.530 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:23:16.570 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 01:23:16.570 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 01:23:16.570 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:23:16.580 -07 000000479 INF: FPGA: Recv EMCUR 
17-03-18 01:23:16.580 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:23:16.580 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 01:23:17.060 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.031682,
17-03-18 01:23:17.970 -07 000000576 INF: FPGA: Recv EMIN
17-03-18 01:23:17.970 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:23:17.970 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 1380 ms to get response, and 1389 ms overall
17-03-18 01:23:17.970 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:23:17.980 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 01:23:17.980 -07 000000455 INF: FPGA: Recv EMCUR 
17-03-18 01:23:17.990 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:23:17.990 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:23:17.990 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164470537849317. ------
17-03-18 01:23:17.990 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13925 mm
17-03-18 01:23:17.990 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:23:18.000 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:18.000 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:23:18.000 -07 000000501 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 01:23:18.000 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30420, sync = True, waitForSettling = False)
17-03-18 01:23:18.000 -07 000000480 INF: Z Motor: Moving to -0.139254 mm, started at -0.164471 mm, distance = 25.22 um
17-03-18 01:23:18.000 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:18.010 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:23:18.010 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:18.010 -07 000000590 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:23:18.020 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:23:18.020 -07 000000501 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:18.020 -07 000000480 INF: FPGA: Xmit ZDACW 30420\n [Z Motor]
17-03-18 01:23:18.020 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:23:18.020 -07 000000501 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 01:23:18.020 -07 000000501 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:23:18.030 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:23:18.030 -07 000000480 INF: FPGA: 'ZDACW 30420' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:23:18.040 -07 000000501 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:23:18.050 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:18.050 -07 000000455 INF: FPGA: Recv ZDACR 30420
17-03-18 01:23:18.060 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:23:18.060 -07 000000480 INF: Z Motor: MoveAbsStepped took 59 ms (did NOT wait for settling yet))
17-03-18 01:23:18.230 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:23:18.230 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:23:19.660 -07 000000576 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 01:23:19.660 -07 000000501 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1642 ms overall
17-03-18 01:23:19.660 -07 000000501 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:23:19.660 -07 000000501 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 01:23:19.660 -07 000000501 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1642 ms, distance = 14.918 mm, average velocity = 9.086 mm/sec
17-03-18 01:23:22.250 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:23:22.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:23:22.510 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:22.510 -07 000000479 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:23:22.520 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:22.520 -07 000000501 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:22.550 -07 000000501 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:23:22.550 -07 000000501 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 01:23:22.550 -07 000000501 INF: Y Motor: Moved to 59.9106 after 4558 ms
17-03-18 01:23:22.560 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139254 mm (DAC = 30420)
17-03-18 01:23:22.560 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:22.560 -07 000000455 INF: FPGA: Recv ZSGSRD 30972
17-03-18 01:23:22.570 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:22.570 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:22.570 -07 000000479 INF: FPGA: Recv ZSGSRD 30967
17-03-18 01:23:22.580 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:22.580 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:22.580 -07 000000576 INF: FPGA: Recv ZSGSRD 30963
17-03-18 01:23:22.590 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:22.590 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:22.590 -07 000000590 INF: FPGA: Recv ZSGSRD 30965
17-03-18 01:23:22.600 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:22.600 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:22.600 -07 000000479 INF: FPGA: Recv ZSGSRD 30970
17-03-18 01:23:22.610 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:22.610 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:22.610 -07 000000455 INF: FPGA: Recv ZSGSRD 30968
17-03-18 01:23:22.620 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:22.620 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:22.620 -07 000000576 INF: FPGA: Recv ZSGSRD 30967
17-03-18 01:23:22.630 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:22.630 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:22.630 -07 000000590 INF: FPGA: Recv ZSGSRD 30960
17-03-18 01:23:22.640 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:22.640 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:22.640 -07 000000430 INF: FPGA: Recv ZSGSRD 30964
17-03-18 01:23:22.650 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:22.650 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:22.650 -07 000000590 INF: FPGA: Recv ZSGSRD 30973
17-03-18 01:23:22.660 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:22.660 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:22.660 -07 000000479 INF: FPGA: Recv ZPIEZORD 26398
17-03-18 01:23:22.670 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:22.670 -07 000000561 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.642 V. Piezo Error = -10.0 V.
17-03-18 01:23:22.670 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30967 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30967 (-138.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30960 (-138.4 uncal um), Max = 30973 (-138.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:23:22.670 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30967, posNoise = 6, negNoise = 7
17-03-18 01:23:22.670 -07 000000561 INF: Z Motor: After move to -0.139254, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:22.670 -07 000000561 INF: Z Motor: Settle wait time = 4562 ms, measure time = 107 ms (allowed 150 ms), total time = 4669 ms
17-03-18 01:23:22.670 -07 000000561 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:23:22.720 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4721 ms
17-03-18 01:23:22.720 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:23:22.720 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:22.720 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:22.720 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:23:22.720 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:22.720 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:22.720 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:22.730 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:23:22.730 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:23:22.750 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-18 01:23:22.750 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:23:22.750 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:23:22.750 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:23:22.750 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:23:22.760 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 01:23:22.760 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:23:22.800 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:23:23.100 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:23:23.100 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:23:23.100 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:23:23.100 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619685872, 0x0, 559484976) start.
17-03-18 01:23:23.140 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:23:23.140 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 01:23:23.140 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 01:23:23.230 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619685872, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:23:23.230 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:23.230 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:23:23.230 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:23:23.320 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.997626,
17-03-18 01:23:23.340 -07 000000590 INF: Image SNR check: start
17-03-18 01:23:23.350 -07 000000590 INF: Image SNR check: pass  [peak (Max-Min)=127.79]
17-03-18 01:23:23.350 -07 000000590 INF: Autofocus start
17-03-18 01:23:23.350 -07 000000590 INF: MeasureProfile start
17-03-18 01:23:23.360 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:23.360 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:23.370 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:23:23.370 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:23:23.370 -07 000000590 INF: MeasureProfile done
17-03-18 01:23:23.370 -07 000000590 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:23:23.370 -07 000000590 INF: Autofocus finished
17-03-18 01:23:23.570 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:23:23.570 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:23:23.570 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.139261929405047. ----------
17-03-18 01:23:23.570 -07 000000610 INF: Cycle	86	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:23:23.580 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28944, sync = True, waitForSettling = True)
17-03-18 01:23:23.580 -07 000000610 INF: Z Motor: Moving to -0.132497 mm, started at -0.139262 mm, distance = 6.76 um
17-03-18 01:23:23.580 -07 000000610 INF: FPGA: Xmit ZDACW 28944\n [Z Motor]
17-03-18 01:23:23.580 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:23:23.590 -07 000000610 INF: FPGA: 'ZDACW 28944' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:23.590 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:23.590 -07 000000501 INF: FPGA: Recv ZDACR 28944
17-03-18 01:23:23.600 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:23.600 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:23:23.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:23.750 -07 000000479 INF: FPGA: Recv ZSGSRD 29912
17-03-18 01:23:23.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:23.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:23.760 -07 000000590 INF: FPGA: Recv ZSGSRD 29914
17-03-18 01:23:23.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:23.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:23.770 -07 000000561 INF: FPGA: Recv ZSGSRD 29917
17-03-18 01:23:23.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:23.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:23.780 -07 000000569 INF: FPGA: Recv ZSGSRD 29920
17-03-18 01:23:23.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:23.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:23.790 -07 000000501 INF: FPGA: Recv ZSGSRD 29913
17-03-18 01:23:23.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:23.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:23.800 -07 000000430 INF: FPGA: Recv ZSGSRD 29916
17-03-18 01:23:23.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:23.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:23.810 -07 000000501 INF: FPGA: Recv ZSGSRD 29923
17-03-18 01:23:23.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:23.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:23.820 -07 000000590 INF: FPGA: Recv ZSGSRD 29916
17-03-18 01:23:23.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:23.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:23.830 -07 000000561 INF: FPGA: Recv ZSGSRD 29916
17-03-18 01:23:23.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:23.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:23.840 -07 000000576 INF: FPGA: Recv ZSGSRD 29908
17-03-18 01:23:23.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:23.850 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:23.850 -07 000000479 INF: FPGA: Recv ZPIEZORD 25239
17-03-18 01:23:23.860 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:23.860 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -10.2 V.
17-03-18 01:23:23.860 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29916 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29916 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29908 (-131.7 uncal um), Max = 29923 (-131.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:23:23.860 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29916, posNoise = 7, negNoise = 8
17-03-18 01:23:23.860 -07 000000610 INF: Z Motor: After move to -0.132497, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:23.860 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:23:23.860 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:23.860 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:23.860 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:23.860 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:23:23.860 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:23.860 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:23.860 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:23:23.860 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:23:23.860 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:23.860 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:23:23.860 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:23:23.860 -07 000000479 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:23:23.860 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:23:23.860 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:23:23.880 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:23:23.880 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:23:23.880 -07 000000479 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 01:23:23.880 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:23:23.890 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:23:23.890 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:23:23.900 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 01:23:23.900 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-18 01:23:23.900 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29121 150\n [Camera]
17-03-18 01:23:24.100 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:23:24.490 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:23:24.490 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:23:24.490 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:24.490 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:24.490 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:23:24.500 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:23:24.500 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:23:24.500 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:24.500 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:24.500 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:23:24.680 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29121 775
17-03-18 01:23:24.830 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:23:24.900 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:23:24.900 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:23:24.900 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:24.900 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:24.900 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:23:24.900 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:23:24.900 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:23:24.900 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:24.910 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:24.910 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:23:25.020 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:23:25.020 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:23:25.020 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:25.020 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:25.020 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:23:25.020 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:23:25.020 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:23:25.030 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:25.030 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:25.030 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 01:23:25.210 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:23:25.210 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:23:25.210 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29121 150' command took 2 ms to send, 1308 ms to get response, and 1312 ms overall
17-03-18 01:23:25.220 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:23:25.220 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.132510082444056. ------
17-03-18 01:23:25.220 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:25.220 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13876 mm
17-03-18 01:23:25.220 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:23:25.220 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:23:25.230 -07 000000430 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 01:23:25.230 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:25.230 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 30312, sync = True, waitForSettling = False)
17-03-18 01:23:25.230 -07 000000590 INF: Z Motor: Moving to -0.138759 mm, started at -0.132510 mm, distance = -6.25 um
17-03-18 01:23:25.230 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:25.230 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:23:25.230 -07 000000455 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:23:25.240 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:25.240 -07 000000430 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:25.240 -07 000000430 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:23:25.240 -07 000000430 INF: Y Motor: Moving 1331 steps2
17-03-18 01:23:25.240 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:23:25.250 -07 000000590 INF: FPGA: Xmit ZDACW 30312\n [Z Motor]
17-03-18 01:23:25.250 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:23:25.260 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:23:25.260 -07 000000590 INF: FPGA: 'ZDACW 30312' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:23:25.270 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:25.270 -07 000000467 INF: FPGA: Recv ZDACR 30312
17-03-18 01:23:25.280 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:23:25.280 -07 000000590 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 01:23:25.410 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 01:23:25.410 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 01:23:25.410 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:25.410 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:25.420 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:23:25.420 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:23:25.420 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:25.420 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:23:25.430 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:23:25.430 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:23:25.440 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:23:25.440 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 01:23:25.630 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 01:23:25.630 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:23:25.670 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:25.670 -07 000000479 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:23:25.680 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:23:25.680 -07 000000430 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:25.680 -07 000000430 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:23:25.680 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-18 01:23:26.630 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:26.630 -07 000000467 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:23:26.640 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:26.640 -07 000000430 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:26.660 -07 000000430 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:23:26.660 -07 000000430 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:23:26.660 -07 000000430 INF: Y Motor: Moved to 60.7329 after 1438 ms (table move)
17-03-18 01:23:26.670 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138759 mm (DAC = 30312)
17-03-18 01:23:26.670 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:26.670 -07 000000501 INF: FPGA: Recv ZSGSRD 30893
17-03-18 01:23:26.680 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:23:26.680 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:26.680 -07 000000455 INF: FPGA: Recv ZSGSRD 30893
17-03-18 01:23:26.690 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:26.690 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:26.690 -07 000000501 INF: FPGA: Recv ZSGSRD 30889
17-03-18 01:23:26.700 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:26.700 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:26.700 -07 000000561 INF: FPGA: Recv ZSGSRD 30886
17-03-18 01:23:26.710 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:26.710 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:26.710 -07 000000479 INF: FPGA: Recv ZSGSRD 30895
17-03-18 01:23:26.720 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:26.720 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:26.720 -07 000000479 INF: FPGA: Recv ZSGSRD 30889
17-03-18 01:23:26.730 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:26.730 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:26.730 -07 000000479 INF: FPGA: Recv ZSGSRD 30893
17-03-18 01:23:26.740 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:26.740 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:26.740 -07 000000447 INF: FPGA: Recv ZSGSRD 30884
17-03-18 01:23:26.750 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:26.750 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:26.750 -07 000000447 INF: FPGA: Recv ZSGSRD 30887
17-03-18 01:23:26.760 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:26.760 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:26.760 -07 000000479 INF: FPGA: Recv ZSGSRD 30893
17-03-18 01:23:26.770 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:26.770 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:26.770 -07 000000479 INF: FPGA: Recv ZPIEZORD 26591
17-03-18 01:23:26.780 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:26.780 -07 000000576 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.625 V. Piezo Error = -9.4 V.
17-03-18 01:23:26.780 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30890 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30891 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30884 (-137.9 uncal um), Max = 30895 (-138.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:23:26.780 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30890, posNoise = 5, negNoise = 6
17-03-18 01:23:26.780 -07 000000576 INF: Z Motor: After move to -0.138759, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:26.780 -07 000000576 INF: Z Motor: Settle wait time = 1441 ms, measure time = 109 ms (allowed 150 ms), total time = 1550 ms
17-03-18 01:23:26.780 -07 000000576 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:23:26.830 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 01:23:26.830 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:23:26.830 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:26.830 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:26.830 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:26.830 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:26.830 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:23:26.830 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:26.830 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:26.830 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:23:26.840 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:23:26.840 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:23:26.850 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:23:26.850 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:23:26.850 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:23:26.900 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 01:23:27.200 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 01:23:27.200 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 01:23:27.200 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:23:27.200 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 01:23:27.240 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:23:27.240 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 01:23:27.240 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 01:23:27.250 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:23:27.330 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:23:27.330 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:27.330 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:23:27.330 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:23:27.340 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:23:27.440 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:27.440 -07 000000576 INF: Autofocus start
17-03-18 01:23:27.440 -07 000000576 INF: MeasureProfile start
17-03-18 01:23:27.440 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:27.450 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:27.450 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:23:27.450 -07 000000576 INF: MeasureProfile done
17-03-18 01:23:27.450 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:23:27.450 -07 000000576 INF: Autofocus finished
17-03-18 01:23:27.650 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:23:27.650 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 2 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 01:23:27.650 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.138767265070131. ----------
17-03-18 01:23:27.660 -07 000000610 INF: Cycle	86	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:23:27.660 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28820, sync = True, waitForSettling = True)
17-03-18 01:23:27.660 -07 000000610 INF: Z Motor: Moving to -0.131930 mm, started at -0.138767 mm, distance = 6.84 um
17-03-18 01:23:27.660 -07 000000610 INF: FPGA: Xmit ZDACW 28820\n [Z Motor]
17-03-18 01:23:27.660 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:23:27.670 -07 000000610 INF: FPGA: 'ZDACW 28820' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:23:27.670 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:27.670 -07 000000591 INF: FPGA: Recv ZDACR 28820
17-03-18 01:23:27.680 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:27.680 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:23:27.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:27.830 -07 000000591 INF: FPGA: Recv ZSGSRD 29821
17-03-18 01:23:27.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:27.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:27.840 -07 000000479 INF: FPGA: Recv ZSGSRD 29827
17-03-18 01:23:27.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:27.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:27.850 -07 000000430 INF: FPGA: Recv ZSGSRD 29825
17-03-18 01:23:27.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:23:27.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:27.860 -07 000000480 INF: FPGA: Recv ZSGSRD 29820
17-03-18 01:23:27.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:27.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:27.870 -07 000000479 INF: FPGA: Recv ZSGSRD 29825
17-03-18 01:23:27.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:27.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:27.880 -07 000000480 INF: FPGA: Recv ZSGSRD 29830
17-03-18 01:23:27.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:27.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:27.890 -07 000000479 INF: FPGA: Recv ZSGSRD 29824
17-03-18 01:23:27.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:27.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:27.900 -07 000000591 INF: FPGA: Recv ZSGSRD 29825
17-03-18 01:23:27.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:27.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:27.910 -07 000000430 INF: FPGA: Recv ZSGSRD 29825
17-03-18 01:23:27.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:27.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:27.920 -07 000000591 INF: FPGA: Recv ZSGSRD 29826
17-03-18 01:23:27.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:27.930 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:27.930 -07 000000480 INF: FPGA: Recv ZPIEZORD 25228
17-03-18 01:23:27.940 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:27.940 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -10.1 V.
17-03-18 01:23:27.940 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29825 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29825 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29820 (-131.1 uncal um), Max = 29830 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:23:27.940 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29825, posNoise = 5, negNoise = 5
17-03-18 01:23:27.940 -07 000000610 INF: Z Motor: After move to -0.131930, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:27.940 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:23:27.940 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:27.940 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:27.940 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:27.940 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:27.940 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:23:27.940 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:23:27.940 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:23:27.940 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:27.940 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:23:27.940 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:23:27.940 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:27.940 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:23:27.950 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:23:27.950 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:23:27.950 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:23:27.950 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:23:27.960 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:23:27.960 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:23:27.960 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:23:27.960 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:23:27.970 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28996 150\n [Camera]
17-03-18 01:23:28.170 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:23:28.560 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:23:28.560 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:23:28.560 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:28.560 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:28.560 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 01:23:28.560 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:23:28.560 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:23:28.560 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:28.560 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:28.560 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:23:28.680 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.983999,
17-03-18 01:23:28.750 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28996 775
17-03-18 01:23:28.900 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:23:28.960 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:23:28.960 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:23:28.960 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:23:28.960 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:28.960 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:23:28.960 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:28.960 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:28.960 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:28.960 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:23:28.970 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:23:29.090 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:23:29.090 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:23:29.090 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:29.090 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:29.090 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 01:23:29.090 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:23:29.090 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:23:29.090 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:29.090 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:29.090 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 01:23:29.280 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:23:29.280 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:23:29.280 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28996 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-18 01:23:29.280 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:23:29.280 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.131925479139156. ------
17-03-18 01:23:29.280 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:29.280 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13858 mm
17-03-18 01:23:29.280 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:23:29.290 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:23:29.290 -07 000000480 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 01:23:29.290 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:29.290 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:29.290 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:23:29.290 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30273, sync = True, waitForSettling = False)
17-03-18 01:23:29.290 -07 000000591 INF: Z Motor: Moving to -0.138581 mm, started at -0.131925 mm, distance = -6.66 um
17-03-18 01:23:29.290 -07 000000438 INF: FPGA: Recv YRDPOS 124382
17-03-18 01:23:29.300 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:23:29.300 -07 000000591 INF: FPGA: Xmit ZDACW 30273\n [Z Motor]
17-03-18 01:23:29.300 -07 000000480 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:29.300 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:23:29.300 -07 000000480 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:23:29.300 -07 000000480 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:23:29.310 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:23:29.310 -07 000000591 INF: FPGA: 'ZDACW 30273' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:23:29.320 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:29.320 -07 000000430 INF: FPGA: Recv ZDACR 30273
17-03-18 01:23:29.330 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:23:29.330 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:23:29.330 -07 000000591 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 01:23:29.490 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:23:29.490 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:23:29.490 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:29.490 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:23:29.490 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:23:29.490 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:29.500 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:29.500 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:23:29.500 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:23:29.500 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:23:29.510 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:23:29.510 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 01:23:29.700 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 01:23:29.700 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 399 ms overall
17-03-18 01:23:29.750 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:29.750 -07 000000479 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:23:29.760 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:23:29.760 -07 000000480 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:29.760 -07 000000480 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:23:29.760 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.105 mm/sec
17-03-18 01:23:30.710 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:30.710 -07 000000455 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:23:30.720 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:30.720 -07 000000480 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:30.740 -07 000000480 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:23:30.740 -07 000000480 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:23:30.740 -07 000000480 INF: Y Motor: Moved to 61.5635 after 1455 ms (table move)
17-03-18 01:23:30.750 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138581 mm (DAC = 30273)
17-03-18 01:23:30.750 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:30.750 -07 000000467 INF: FPGA: Recv ZSGSRD 30855
17-03-18 01:23:30.760 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:30.760 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:30.760 -07 000000561 INF: FPGA: Recv ZSGSRD 30858
17-03-18 01:23:30.770 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:30.770 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:30.770 -07 000000467 INF: FPGA: Recv ZSGSRD 30869
17-03-18 01:23:30.780 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:30.780 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:30.780 -07 000000501 INF: FPGA: Recv ZSGSRD 30870
17-03-18 01:23:30.790 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:30.790 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:30.790 -07 000000561 INF: FPGA: Recv ZSGSRD 30870
17-03-18 01:23:30.800 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:30.800 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:30.800 -07 000000569 INF: FPGA: Recv ZSGSRD 30851
17-03-18 01:23:30.810 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:30.810 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:30.810 -07 000000561 INF: FPGA: Recv ZSGSRD 30854
17-03-18 01:23:30.820 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:30.820 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:30.820 -07 000000569 INF: FPGA: Recv ZSGSRD 30856
17-03-18 01:23:30.830 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:30.830 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:30.830 -07 000000438 INF: FPGA: Recv ZSGSRD 30852
17-03-18 01:23:30.840 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:30.840 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:30.840 -07 000000438 INF: FPGA: Recv ZSGSRD 30868
17-03-18 01:23:30.850 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:30.850 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:30.850 -07 000000438 INF: FPGA: Recv ZPIEZORD 26633
17-03-18 01:23:30.860 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:30.860 -07 000000576 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.619 V. Piezo Error = -9.3 V.
17-03-18 01:23:30.860 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30860 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30857 (-137.8 uncal um), StdDev = 8 (0.1 uncal um), Range = 19 (0.1 uncal um), Min = 30851 (-137.7 uncal um), Max = 30870 (-137.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:23:30.860 -07 000000576 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30860, posNoise = 10, negNoise = 9
17-03-18 01:23:30.860 -07 000000576 INF: Z Motor: After move to -0.138581, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:30.860 -07 000000576 INF: Z Motor: Settle wait time = 1458 ms, measure time = 110 ms (allowed 150 ms), total time = 1568 ms
17-03-18 01:23:30.860 -07 000000576 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:23:30.900 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 01:23:30.900 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:23:30.900 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:30.900 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:30.900 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:30.900 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:30.900 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:23:30.900 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:30.900 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:23:30.900 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:23:30.910 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:23:30.910 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:23:30.920 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:23:30.920 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:23:30.920 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:23:30.970 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:23:31.270 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:23:31.270 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:23:31.270 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:23:31.270 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 01:23:31.310 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:23:31.310 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 01:23:31.310 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 01:23:31.390 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:23:31.390 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:31.400 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:23:31.400 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:23:31.410 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:31.410 -07 000000590 INF: Autofocus start
17-03-18 01:23:31.410 -07 000000590 INF: MeasureProfile start
17-03-18 01:23:31.410 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:31.420 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:31.420 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:23:31.420 -07 000000590 INF: MeasureProfile done
17-03-18 01:23:31.420 -07 000000590 INF: X=32  Z correction [um]=0.1299841
17-03-18 01:23:31.420 -07 000000590 INF: Autofocus finished
17-03-18 01:23:31.620 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:23:31.620 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:23:31.630 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.138574538705878. ----------
17-03-18 01:23:31.630 -07 000000610 INF: Cycle	86	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:23:31.630 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28814, sync = True, waitForSettling = True)
17-03-18 01:23:31.630 -07 000000610 INF: Z Motor: Moving to -0.131902 mm, started at -0.138575 mm, distance = 6.67 um
17-03-18 01:23:31.630 -07 000000610 INF: FPGA: Xmit ZDACW 28814\n [Z Motor]
17-03-18 01:23:31.630 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:23:31.640 -07 000000610 INF: FPGA: 'ZDACW 28814' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:23:31.640 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:31.640 -07 000000576 INF: FPGA: Recv ZDACR 28814
17-03-18 01:23:31.650 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:31.650 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:23:31.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:31.800 -07 000000576 INF: FPGA: Recv ZSGSRD 29822
17-03-18 01:23:31.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:31.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:31.810 -07 000000438 INF: FPGA: Recv ZSGSRD 29827
17-03-18 01:23:31.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:31.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:31.820 -07 000000576 INF: FPGA: Recv ZSGSRD 29816
17-03-18 01:23:31.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:31.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:31.830 -07 000000590 INF: FPGA: Recv ZSGSRD 29819
17-03-18 01:23:31.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:31.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:31.840 -07 000000438 INF: FPGA: Recv ZSGSRD 29822
17-03-18 01:23:31.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:31.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:31.850 -07 000000576 INF: FPGA: Recv ZSGSRD 29820
17-03-18 01:23:31.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:31.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:31.860 -07 000000438 INF: FPGA: Recv ZSGSRD 29824
17-03-18 01:23:31.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:31.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:31.870 -07 000000576 INF: FPGA: Recv ZSGSRD 29819
17-03-18 01:23:31.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:31.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:31.880 -07 000000590 INF: FPGA: Recv ZSGSRD 29822
17-03-18 01:23:31.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:31.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:31.890 -07 000000590 INF: FPGA: Recv ZSGSRD 29826
17-03-18 01:23:31.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:31.900 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:31.900 -07 000000576 INF: FPGA: Recv ZPIEZORD 25226
17-03-18 01:23:31.910 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:31.910 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -10.1 V.
17-03-18 01:23:31.910 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29822 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29822 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29816 (-131.1 uncal um), Max = 29827 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:23:31.910 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29822, posNoise = 5, negNoise = 6
17-03-18 01:23:31.910 -07 000000610 INF: Z Motor: After move to -0.131902, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:31.910 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:23:31.910 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:31.910 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:31.910 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:31.910 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:31.910 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:23:31.910 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:31.910 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:23:31.910 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:23:31.910 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:31.910 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:23:31.910 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:23:31.910 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:23:31.920 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:23:31.920 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:23:31.920 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:23:31.920 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:23:31.930 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:23:31.930 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:23:31.930 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:23:31.930 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:23:31.930 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28991 150\n [Camera]
17-03-18 01:23:32.130 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:23:32.250 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:23:32.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:23:32.520 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:23:32.520 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:23:32.520 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:32.520 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:32.520 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 01:23:32.520 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:23:32.520 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:23:32.520 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:32.520 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:32.520 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 01:23:32.710 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28991 775
17-03-18 01:23:32.860 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:23:32.910 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 01:23:32.910 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 01:23:32.910 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:32.910 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 01:23:32.910 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:23:32.910 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:32.910 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:32.910 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:32.910 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:23:32.920 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:23:33.050 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:23:33.050 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:23:33.050 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:33.180 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:23:33.180 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:23:33.180 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:33.180 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:33.180 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 01:23:33.180 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:33.180 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 01:23:33.240 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:23:33.240 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:23:33.240 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28991 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-18 01:23:33.250 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:23:33.250 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.13190620650273. ------
17-03-18 01:23:33.250 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:33.250 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13832 mm
17-03-18 01:23:33.250 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:23:33.250 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:23:33.250 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30216, sync = True, waitForSettling = False)
17-03-18 01:23:33.250 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:33.250 -07 000000455 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-18 01:23:33.250 -07 000000480 INF: Z Motor: Moving to -0.138320 mm, started at -0.131906 mm, distance = -6.41 um
17-03-18 01:23:33.260 -07 000000480 INF: FPGA: Xmit ZDACW 30216\n [Z Motor]
17-03-18 01:23:33.260 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:33.260 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 01:23:33.270 -07 000000480 INF: FPGA: 'ZDACW 30216' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:23:33.270 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:33.270 -07 000000576 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:23:33.280 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:23:33.280 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:23:33.280 -07 000000455 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:33.280 -07 000000455 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:23:33.280 -07 000000455 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:23:33.290 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:33.290 -07 000000430 INF: FPGA: Recv ZDACR 30216
17-03-18 01:23:33.300 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:23:33.300 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:23:33.300 -07 000000480 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 01:23:33.480 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:23:33.480 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 01:23:33.580 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:23:33.580 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:23:33.580 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:33.580 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:23:33.580 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:23:33.580 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:33.580 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:33.580 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:33.590 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-18 01:23:33.590 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:23:33.680 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 01:23:33.680 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 393 ms overall
17-03-18 01:23:33.730 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:33.730 -07 000000479 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:23:33.740 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:23:33.740 -07 000000455 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:33.740 -07 000000455 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:23:33.740 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.135 mm/sec
17-03-18 01:23:34.040 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.004458,
17-03-18 01:23:34.690 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:34.690 -07 000000576 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:23:34.700 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:34.700 -07 000000455 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:34.720 -07 000000455 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:23:34.720 -07 000000455 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:23:34.720 -07 000000455 INF: Y Motor: Moved to 62.3955 after 1470 ms (table move)
17-03-18 01:23:34.720 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138320 mm (DAC = 30216)
17-03-18 01:23:34.720 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:35.720 -07 000000576 INF: FPGA: Recv ZSGSRD 30820
17-03-18 01:23:35.720 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 980 ms to get response, and 990 ms overall
17-03-18 01:23:35.720 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:35.720 -07 000000576 INF: FPGA: Recv ZSGSRD 30822
17-03-18 01:23:35.730 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:35.730 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:35.730 -07 000000590 INF: FPGA: Recv ZSGSRD 30825
17-03-18 01:23:35.740 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:35.740 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:35.740 -07 000000501 INF: FPGA: Recv ZSGSRD 30819
17-03-18 01:23:35.750 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:35.750 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:35.750 -07 000000447 INF: FPGA: Recv ZSGSRD 30814
17-03-18 01:23:35.760 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:35.760 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:35.760 -07 000000590 INF: FPGA: Recv ZSGSRD 30823
17-03-18 01:23:35.770 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:35.770 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:35.770 -07 000000561 INF: FPGA: Recv ZSGSRD 30826
17-03-18 01:23:35.780 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:35.780 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:35.780 -07 000000590 INF: FPGA: Recv ZSGSRD 30829
17-03-18 01:23:35.790 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:35.790 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:35.790 -07 000000447 INF: FPGA: Recv ZSGSRD 30822
17-03-18 01:23:35.800 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:35.800 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:35.800 -07 000000461 INF: FPGA: Recv ZSGSRD 30821
17-03-18 01:23:35.810 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:35.810 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:35.810 -07 000000561 INF: FPGA: Recv ZPIEZORD 26554
17-03-18 01:23:35.820 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:35.820 -07 000000591 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.611 V. Piezo Error = -9.4 V.
17-03-18 01:23:35.820 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30822 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30822 (-137.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30814 (-137.5 uncal um), Max = 30829 (-137.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:23:35.820 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30822, posNoise = 7, negNoise = 8
17-03-18 01:23:35.820 -07 000000591 INF: Z Motor: After move to -0.138320, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:35.820 -07 000000591 INF: Z Motor: Settle wait time = 1472 ms, measure time = 1092 ms (allowed 150 ms), total time = 2564 ms
17-03-18 01:23:35.820 -07 000000591 INF: Z Motor: Warning: Actual position measuring time = 1092 ms, longer than max expected time of 150 ms
17-03-18 01:23:35.820 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2568 ms
17-03-18 01:23:35.820 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:23:35.830 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:35.830 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:35.830 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:23:35.830 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:35.830 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:35.830 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:35.830 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:35.830 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:23:35.840 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:23:35.840 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:23:35.840 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 01:23:35.850 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 01:23:35.850 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:23:35.900 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 01:23:36.200 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 01:23:36.200 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 01:23:36.200 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:23:36.200 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 01:23:36.230 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:23:36.240 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:23:36.240 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:23:36.320 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 01:23:36.320 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:36.330 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:23:36.330 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 01:23:36.340 -07 000000501 INF: Autofocus start
17-03-18 01:23:36.340 -07 000000501 INF: MeasureProfile start
17-03-18 01:23:36.340 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:36.340 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:36.350 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:36.350 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:23:36.350 -07 000000501 INF: MeasureProfile done
17-03-18 01:23:36.350 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:23:36.350 -07 000000501 INF: Autofocus finished
17-03-18 01:23:36.550 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:23:36.550 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:23:36.550 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138330418644491. ----------
17-03-18 01:23:36.550 -07 000000610 INF: Cycle	86	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:23:36.560 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28723, sync = True, waitForSettling = True)
17-03-18 01:23:36.560 -07 000000610 INF: Z Motor: Moving to -0.131485 mm, started at -0.138330 mm, distance = 6.84 um
17-03-18 01:23:36.560 -07 000000610 INF: FPGA: Xmit ZDACW 28723\n [Z Motor]
17-03-18 01:23:36.560 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:23:36.570 -07 000000610 INF: FPGA: 'ZDACW 28723' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:36.570 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:36.570 -07 000000561 INF: FPGA: Recv ZDACR 28723
17-03-18 01:23:36.580 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:36.580 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:23:36.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:36.730 -07 000000591 INF: FPGA: Recv ZSGSRD 29760
17-03-18 01:23:36.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:36.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:36.740 -07 000000576 INF: FPGA: Recv ZSGSRD 29763
17-03-18 01:23:36.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:36.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:36.750 -07 000000501 INF: FPGA: Recv ZSGSRD 29756
17-03-18 01:23:36.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:36.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:36.760 -07 000000576 INF: FPGA: Recv ZSGSRD 29756
17-03-18 01:23:36.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:36.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:36.770 -07 000000501 INF: FPGA: Recv ZSGSRD 29757
17-03-18 01:23:36.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:36.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:36.780 -07 000000438 INF: FPGA: Recv ZSGSRD 29756
17-03-18 01:23:36.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:36.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:36.790 -07 000000576 INF: FPGA: Recv ZSGSRD 29759
17-03-18 01:23:36.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:36.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:36.800 -07 000000438 INF: FPGA: Recv ZSGSRD 29760
17-03-18 01:23:36.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:36.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:36.810 -07 000000576 INF: FPGA: Recv ZSGSRD 29759
17-03-18 01:23:36.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:36.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:36.820 -07 000000438 INF: FPGA: Recv ZSGSRD 29754
17-03-18 01:23:36.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:36.830 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:36.830 -07 000000576 INF: FPGA: Recv ZPIEZORD 25131
17-03-18 01:23:36.840 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:36.840 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.383 V. Piezo Error = -10.1 V.
17-03-18 01:23:36.840 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29758 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29758 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29754 (-130.7 uncal um), Max = 29763 (-130.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:23:36.840 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29758, posNoise = 5, negNoise = 4
17-03-18 01:23:36.840 -07 000000610 INF: Z Motor: After move to -0.131485, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:36.840 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:23:36.840 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:36.840 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:36.840 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:36.840 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:23:36.840 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:36.840 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:36.840 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:23:36.840 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:23:36.840 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:36.840 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:23:36.840 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:23:36.840 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:23:36.840 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:23:36.840 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:23:36.850 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:23:36.850 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:23:36.860 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:23:36.860 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:23:36.860 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:23:36.860 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:23:36.870 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28900 150\n [Camera]
17-03-18 01:23:37.060 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:23:37.250 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:23:37.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:23:37.460 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:23:37.460 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:23:37.460 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:37.460 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:23:37.460 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:23:37.460 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:37.460 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:37.460 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:23:37.460 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:37.460 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:23:37.650 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28900 775
17-03-18 01:23:37.800 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:23:37.860 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:23:37.860 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:23:37.860 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:37.860 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:23:37.860 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:23:37.860 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:37.860 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:37.860 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:23:37.860 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:37.870 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:23:37.990 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:23:37.990 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:23:37.990 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:38.100 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:23:38.100 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:23:38.110 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:38.110 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:38.110 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:23:38.110 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:38.110 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:23:38.180 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:23:38.180 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:23:38.180 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28900 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:23:38.180 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:23:38.180 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131495056925658. ------
17-03-18 01:23:38.180 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:38.180 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13827 mm
17-03-18 01:23:38.180 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:23:38.190 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:23:38.190 -07 000000467 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 01:23:38.190 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:38.190 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30204, sync = True, waitForSettling = False)
17-03-18 01:23:38.190 -07 000000561 INF: Z Motor: Moving to -0.138265 mm, started at -0.131495 mm, distance = -6.77 um
17-03-18 01:23:38.190 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:38.190 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:23:38.190 -07 000000480 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:23:38.200 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:38.200 -07 000000467 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:38.200 -07 000000467 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:23:38.200 -07 000000467 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:23:38.200 -07 000000561 INF: FPGA: Xmit ZDACW 30204\n [Z Motor]
17-03-18 01:23:38.200 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:23:38.210 -07 000000561 INF: FPGA: 'ZDACW 30204' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:23:38.210 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:23:38.220 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:23:38.230 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:38.230 -07 000000447 INF: FPGA: Recv ZDACR 30204
17-03-18 01:23:38.240 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:23:38.240 -07 000000561 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 01:23:38.410 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:23:38.410 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 01:23:38.510 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:23:38.510 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:23:38.510 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:38.510 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:23:38.510 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:23:38.510 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:38.520 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:38.520 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-18 01:23:38.520 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:38.520 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 01:23:38.600 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:23:38.600 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-18 01:23:38.640 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:38.640 -07 000000576 INF: FPGA: Recv YRDPOS 129482
17-03-18 01:23:38.650 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:38.650 -07 000000467 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:38.650 -07 000000467 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:23:38.650 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.837 mm, average velocity = 2.088 mm/sec
17-03-18 01:23:39.400 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.001704,
17-03-18 01:23:39.600 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:39.600 -07 000000561 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:23:39.610 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:39.610 -07 000000467 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:39.630 -07 000000467 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:23:39.630 -07 000000467 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:23:39.630 -07 000000467 INF: Y Motor: Moved to 63.2241 after 1446 ms (table move)
17-03-18 01:23:39.640 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138265 mm (DAC = 30204)
17-03-18 01:23:39.640 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:39.640 -07 000000561 INF: FPGA: Recv ZSGSRD 30812
17-03-18 01:23:39.650 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:23:39.650 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:39.650 -07 000000561 INF: FPGA: Recv ZSGSRD 30809
17-03-18 01:23:39.660 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:39.660 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:39.660 -07 000000561 INF: FPGA: Recv ZSGSRD 30816
17-03-18 01:23:39.670 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:39.670 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:39.670 -07 000000561 INF: FPGA: Recv ZSGSRD 30818
17-03-18 01:23:39.680 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:39.680 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:39.680 -07 000000561 INF: FPGA: Recv ZSGSRD 30814
17-03-18 01:23:39.690 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:39.690 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:39.690 -07 000000561 INF: FPGA: Recv ZSGSRD 30820
17-03-18 01:23:39.700 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:39.700 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:39.700 -07 000000561 INF: FPGA: Recv ZSGSRD 30812
17-03-18 01:23:39.710 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:39.710 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:39.710 -07 000000561 INF: FPGA: Recv ZSGSRD 30809
17-03-18 01:23:39.720 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:39.720 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:39.720 -07 000000561 INF: FPGA: Recv ZSGSRD 30807
17-03-18 01:23:39.730 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:39.730 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:39.730 -07 000000561 INF: FPGA: Recv ZSGSRD 30810
17-03-18 01:23:39.740 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:39.740 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:39.740 -07 000000561 INF: FPGA: Recv ZPIEZORD 26580
17-03-18 01:23:39.750 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:39.750 -07 000000569 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.609 V. Piezo Error = -9.3 V.
17-03-18 01:23:39.750 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30813 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30812 (-137.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30807 (-137.4 uncal um), Max = 30820 (-137.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:23:39.750 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30813, posNoise = 7, negNoise = 6
17-03-18 01:23:39.750 -07 000000569 INF: Z Motor: After move to -0.138265, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:39.750 -07 000000569 INF: Z Motor: Settle wait time = 1450 ms, measure time = 109 ms (allowed 150 ms), total time = 1559 ms
17-03-18 01:23:39.750 -07 000000569 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:23:39.800 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 01:23:39.800 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:23:39.800 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:39.800 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:39.800 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:39.800 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:39.800 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:23:39.800 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:39.810 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:39.810 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:23:39.810 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:23:39.810 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:23:39.810 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:23:39.810 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:23:39.820 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:23:39.860 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:23:40.160 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:23:40.160 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:23:40.160 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:23:40.160 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:23:40.200 -07 000000467 INF: FPGA: Recv @CAMSNAP 382
17-03-18 01:23:40.200 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 01:23:40.200 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 01:23:40.280 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 01:23:40.280 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:40.280 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:23:40.290 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 01:23:40.300 -07 000000455 INF: Autofocus start
17-03-18 01:23:40.300 -07 000000455 INF: MeasureProfile start
17-03-18 01:23:40.300 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:40.300 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:40.310 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:23:40.310 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:23:40.320 -07 000000455 INF: MeasureProfile done
17-03-18 01:23:40.320 -07 000000455 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 01:23:40.320 -07 000000455 INF: Autofocus finished
17-03-18 01:23:40.510 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:23:40.510 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:23:40.510 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138272600735215. ----------
17-03-18 01:23:40.510 -07 000000610 INF: Cycle	86	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:23:40.520 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28699, sync = True, waitForSettling = True)
17-03-18 01:23:40.520 -07 000000610 INF: Z Motor: Moving to -0.131376 mm, started at -0.138273 mm, distance = 6.90 um
17-03-18 01:23:40.520 -07 000000610 INF: FPGA: Xmit ZDACW 28699\n [Z Motor]
17-03-18 01:23:40.520 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:23:40.530 -07 000000610 INF: FPGA: 'ZDACW 28699' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:23:40.530 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:40.530 -07 000000455 INF: FPGA: Recv ZDACR 28699
17-03-18 01:23:40.540 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:40.540 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:23:40.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:40.690 -07 000000455 INF: FPGA: Recv ZSGSRD 29740
17-03-18 01:23:40.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:40.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:40.700 -07 000000569 INF: FPGA: Recv ZSGSRD 29743
17-03-18 01:23:40.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:40.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:40.710 -07 000000467 INF: FPGA: Recv ZSGSRD 29738
17-03-18 01:23:40.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:40.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:40.720 -07 000000455 INF: FPGA: Recv ZSGSRD 29742
17-03-18 01:23:40.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:40.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:40.730 -07 000000455 INF: FPGA: Recv ZSGSRD 29739
17-03-18 01:23:40.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:40.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:40.740 -07 000000561 INF: FPGA: Recv ZSGSRD 29739
17-03-18 01:23:40.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:40.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:40.750 -07 000000455 INF: FPGA: Recv ZSGSRD 29742
17-03-18 01:23:40.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:40.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:40.760 -07 000000569 INF: FPGA: Recv ZSGSRD 29740
17-03-18 01:23:40.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:40.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:40.770 -07 000000467 INF: FPGA: Recv ZSGSRD 29741
17-03-18 01:23:40.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:40.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:40.780 -07 000000561 INF: FPGA: Recv ZSGSRD 29738
17-03-18 01:23:40.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:40.790 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:40.790 -07 000000561 INF: FPGA: Recv ZPIEZORD 25127
17-03-18 01:23:40.800 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:40.800 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -10.1 V.
17-03-18 01:23:40.800 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29740 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29740 (-130.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29738 (-130.6 uncal um), Max = 29743 (-130.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:23:40.800 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29740, posNoise = 3, negNoise = 2
17-03-18 01:23:40.800 -07 000000610 INF: Z Motor: After move to -0.131376, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:40.800 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:23:40.800 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:40.800 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:40.800 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:40.800 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:40.800 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:23:40.800 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:40.800 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:23:40.800 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:23:40.800 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:40.800 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:23:40.800 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:23:40.800 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:23:40.810 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:23:40.810 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:23:40.810 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:23:40.810 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:23:40.820 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 01:23:40.820 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:23:40.820 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 01:23:40.820 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:23:40.820 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28876 150\n [Camera]
17-03-18 01:23:41.020 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:23:41.410 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:23:41.410 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:23:41.410 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:41.410 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:23:41.410 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:23:41.420 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:41.420 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:41.420 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:23:41.420 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:41.420 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:23:41.610 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28876 776
17-03-18 01:23:41.750 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:23:41.800 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 01:23:41.800 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 01:23:41.800 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:23:41.800 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:41.800 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 01:23:41.800 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:41.810 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:41.810 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:23:41.810 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:41.820 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:23:41.940 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:23:41.940 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:23:41.940 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:41.950 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:23:41.950 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:23:41.950 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:41.950 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:41.950 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:23:41.950 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:41.950 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:23:42.130 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:23:42.130 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:23:42.130 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28876 150' command took 2 ms to send, 1309 ms to get response, and 1312 ms overall
17-03-18 01:23:42.140 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:23:42.140 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131379421107106. ------
17-03-18 01:23:42.140 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:42.140 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13783 mm
17-03-18 01:23:42.140 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:23:42.140 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:42.150 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:23:42.150 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:23:42.150 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 30108, sync = True, waitForSettling = False)
17-03-18 01:23:42.150 -07 000000479 INF: Z Motor: Moving to -0.137826 mm, started at -0.131379 mm, distance = -6.45 um
17-03-18 01:23:42.150 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:23:42.150 -07 000000461 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 01:23:42.160 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:42.160 -07 000000576 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:23:42.170 -07 000000479 INF: FPGA: Xmit ZDACW 30108\n [Z Motor]
17-03-18 01:23:42.170 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:23:42.170 -07 000000461 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:42.170 -07 000000461 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:23:42.170 -07 000000461 INF: Y Motor: Moving 1342 steps-18
17-03-18 01:23:42.170 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:23:42.180 -07 000000479 INF: FPGA: 'ZDACW 30108' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:23:42.180 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:42.180 -07 000000480 INF: FPGA: Recv ZDACR 30108
17-03-18 01:23:42.190 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:23:42.190 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:42.190 -07 000000479 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 01:23:42.250 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:23:42.250 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:23:42.340 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 01:23:42.340 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:23:42.340 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:42.340 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:42.340 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:23:42.340 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:23:42.340 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:42.350 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:23:42.350 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:42.350 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:23:42.350 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:23:42.350 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:23:42.560 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 01:23:42.560 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:23:42.610 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:42.610 -07 000000480 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:23:42.620 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:42.620 -07 000000461 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:42.620 -07 000000461 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 01:23:42.620 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.112 mm/sec
17-03-18 01:23:43.570 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:43.570 -07 000000569 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:23:43.580 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:43.580 -07 000000461 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:43.600 -07 000000461 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:23:43.600 -07 000000461 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:23:43.600 -07 000000461 INF: Y Motor: Moved to 64.0571 after 1452 ms (table move)
17-03-18 01:23:43.600 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137826 mm (DAC = 30108)
17-03-18 01:23:43.600 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:43.610 -07 000000461 INF: FPGA: Recv ZSGSRD 30749
17-03-18 01:23:43.610 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:23:43.610 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:43.610 -07 000000461 INF: FPGA: Recv ZSGSRD 30744
17-03-18 01:23:43.620 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:43.620 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:43.620 -07 000000461 INF: FPGA: Recv ZSGSRD 30746
17-03-18 01:23:43.630 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:43.630 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:43.630 -07 000000591 INF: FPGA: Recv ZSGSRD 30747
17-03-18 01:23:43.640 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:43.640 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:43.640 -07 000000591 INF: FPGA: Recv ZSGSRD 30748
17-03-18 01:23:43.650 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:43.650 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:43.650 -07 000000461 INF: FPGA: Recv ZSGSRD 30748
17-03-18 01:23:43.660 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:43.660 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:43.660 -07 000000461 INF: FPGA: Recv ZSGSRD 30740
17-03-18 01:23:43.670 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:43.670 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:43.670 -07 000000591 INF: FPGA: Recv ZSGSRD 30739
17-03-18 01:23:43.680 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:43.680 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:43.680 -07 000000591 INF: FPGA: Recv ZSGSRD 30739
17-03-18 01:23:43.690 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:43.690 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:43.690 -07 000000461 INF: FPGA: Recv ZSGSRD 30744
17-03-18 01:23:43.700 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:43.700 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:43.700 -07 000000461 INF: FPGA: Recv ZPIEZORD 26434
17-03-18 01:23:43.710 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:43.710 -07 000000455 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.594 V. Piezo Error = -9.5 V.
17-03-18 01:23:43.710 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30744 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30745 (-137.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30739 (-137.0 uncal um), Max = 30749 (-137.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:23:43.710 -07 000000455 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30744, posNoise = 5, negNoise = 5
17-03-18 01:23:43.710 -07 000000455 INF: Z Motor: After move to -0.137826, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:43.710 -07 000000455 INF: Z Motor: Settle wait time = 1456 ms, measure time = 103 ms (allowed 150 ms), total time = 1559 ms
17-03-18 01:23:43.710 -07 000000455 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 01:23:43.760 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 01:23:43.760 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:23:43.760 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:43.760 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:43.760 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:43.760 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:43.760 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:23:43.760 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:43.760 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:23:43.760 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:23:43.770 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:23:43.770 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:23:43.780 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:23:43.780 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:23:43.780 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:23:43.830 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:23:44.120 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:23:44.130 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:23:44.130 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:23:44.130 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 01:23:44.160 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:23:44.170 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 01:23:44.170 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 01:23:44.250 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 01:23:44.250 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:44.250 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:23:44.250 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 01:23:44.270 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:44.270 -07 000000480 INF: Autofocus start
17-03-18 01:23:44.270 -07 000000480 INF: MeasureProfile start
17-03-18 01:23:44.280 -07 000000480 INF: MeasureProfile done
17-03-18 01:23:44.280 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:23:44.280 -07 000000480 INF: Autofocus finished
17-03-18 01:23:44.280 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:44.280 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 8 ms to get response, and 14 ms overall
17-03-18 01:23:44.280 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:23:44.490 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:23:44.490 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 201 ms to get response, and 202 ms overall
17-03-18 01:23:44.490 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.137829330097434. ----------
17-03-18 01:23:44.490 -07 000000610 INF: Cycle	86	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:23:44.490 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28616, sync = True, waitForSettling = True)
17-03-18 01:23:44.490 -07 000000610 INF: Z Motor: Moving to -0.130996 mm, started at -0.137829 mm, distance = 6.83 um
17-03-18 01:23:44.490 -07 000000610 INF: FPGA: Xmit ZDACW 28616\n [Z Motor]
17-03-18 01:23:44.500 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:23:44.500 -07 000000610 INF: FPGA: 'ZDACW 28616' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 01:23:44.500 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:44.500 -07 000000480 INF: FPGA: Recv ZDACR 28616
17-03-18 01:23:44.510 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:44.510 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:23:44.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:44.660 -07 000000569 INF: FPGA: Recv ZSGSRD 29685
17-03-18 01:23:44.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:44.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:44.670 -07 000000569 INF: FPGA: Recv ZSGSRD 29682
17-03-18 01:23:44.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:44.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:44.680 -07 000000480 INF: FPGA: Recv ZSGSRD 29675
17-03-18 01:23:44.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:44.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:44.690 -07 000000569 INF: FPGA: Recv ZSGSRD 29677
17-03-18 01:23:44.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:44.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:44.700 -07 000000569 INF: FPGA: Recv ZSGSRD 29682
17-03-18 01:23:44.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:44.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:44.710 -07 000000569 INF: FPGA: Recv ZSGSRD 29691
17-03-18 01:23:44.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:44.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:44.720 -07 000000569 INF: FPGA: Recv ZSGSRD 29674
17-03-18 01:23:44.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:44.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:44.730 -07 000000569 INF: FPGA: Recv ZSGSRD 29678
17-03-18 01:23:44.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:44.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:44.740 -07 000000569 INF: FPGA: Recv ZSGSRD 29687
17-03-18 01:23:44.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:44.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:44.760 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.023489,
17-03-18 01:23:44.760 -07 000000569 INF: FPGA: Recv ZSGSRD 29685
17-03-18 01:23:44.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:23:44.780 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:44.780 -07 000000569 INF: FPGA: Recv ZPIEZORD 25080
17-03-18 01:23:44.790 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:23:44.790 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -10.1 V.
17-03-18 01:23:44.790 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29682 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29682 (-130.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29674 (-130.2 uncal um), Max = 29691 (-130.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:23:44.790 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29682, posNoise = 9, negNoise = 8
17-03-18 01:23:44.790 -07 000000610 INF: Z Motor: After move to -0.130996, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:44.790 -07 000000610 INF: Z Motor: MoveAbsStepped took 292 ms)
17-03-18 01:23:44.790 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:44.790 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:44.790 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:44.790 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:44.790 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:23:44.790 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:44.790 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:23:44.790 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:23:44.790 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:23:44.790 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:23:44.790 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:23:44.790 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:23:44.790 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:23:44.790 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:23:44.800 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:23:44.800 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:23:44.800 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:23:44.800 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:23:44.810 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:23:44.810 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:23:44.820 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28793 150\n [Camera]
17-03-18 01:23:45.010 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:23:45.410 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:23:45.410 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:23:45.410 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:45.410 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:23:45.410 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:23:45.410 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:45.410 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:45.410 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-18 01:23:45.420 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:45.420 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2617114384, 0x0, 418435064) start.
17-03-18 01:23:45.600 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28793 778
17-03-18 01:23:45.750 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:23:45.810 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:23:45.810 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:23:45.810 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:45.810 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2617114384, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:23:45.810 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:23:45.810 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:45.820 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:45.820 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:23:45.820 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:23:45.820 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:23:45.940 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:23:45.940 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:23:45.940 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:45.940 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:23:45.940 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:23:45.940 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:45.940 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:45.940 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:23:45.940 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:45.940 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:23:46.130 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:23:46.130 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:23:46.130 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28793 150' command took 2 ms to send, 1303 ms to get response, and 1320 ms overall
17-03-18 01:23:46.130 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:23:46.130 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131006816802884. ------
17-03-18 01:23:46.130 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:46.140 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13757 mm
17-03-18 01:23:46.140 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:23:46.140 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:46.140 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30051, sync = True, waitForSettling = False)
17-03-18 01:23:46.140 -07 000000461 INF: Z Motor: Moving to -0.137565 mm, started at -0.131007 mm, distance = -6.56 um
17-03-18 01:23:46.140 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:23:46.140 -07 000000467 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 01:23:46.150 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:46.150 -07 000000461 INF: FPGA: Xmit ZDACW 30051\n [Z Motor]
17-03-18 01:23:46.150 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:23:46.160 -07 000000461 INF: FPGA: 'ZDACW 30051' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:23:46.160 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:46.160 -07 000000455 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:23:46.170 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:23:46.170 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:23:46.170 -07 000000467 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:46.170 -07 000000467 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:23:46.170 -07 000000467 INF: Y Motor: Moving 1337 steps-11
17-03-18 01:23:46.180 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:46.180 -07 000000430 INF: FPGA: Recv ZDACR 30051
17-03-18 01:23:46.190 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:23:46.190 -07 000000461 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:23:46.190 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:23:46.320 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 01:23:46.320 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 01:23:46.320 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:46.330 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 01:23:46.330 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:46.330 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:23:46.330 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:46.330 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:23:46.330 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:23:46.340 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:23:46.370 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:23:46.370 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:23:46.560 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 01:23:46.560 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:23:46.610 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:46.610 -07 000000561 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:23:46.620 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:46.620 -07 000000467 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:46.620 -07 000000467 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:23:46.620 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-18 01:23:47.250 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:23:47.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:23:47.570 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:47.570 -07 000000569 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:23:47.580 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:47.580 -07 000000467 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:47.610 -07 000000467 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:23:47.610 -07 000000467 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:23:47.610 -07 000000467 INF: Y Motor: Moved to 64.8789 after 1468 ms (table move)
17-03-18 01:23:47.610 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137565 mm (DAC = 30051)
17-03-18 01:23:47.610 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:47.610 -07 000000455 INF: FPGA: Recv ZSGSRD 30708
17-03-18 01:23:47.620 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:23:47.620 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:47.620 -07 000000590 INF: FPGA: Recv ZSGSRD 30701
17-03-18 01:23:47.630 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:47.630 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:47.630 -07 000000467 INF: FPGA: Recv ZSGSRD 30705
17-03-18 01:23:47.640 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:47.640 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:47.640 -07 000000430 INF: FPGA: Recv ZSGSRD 30707
17-03-18 01:23:47.650 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:47.650 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:47.650 -07 000000576 INF: FPGA: Recv ZSGSRD 30706
17-03-18 01:23:47.660 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:47.660 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:47.660 -07 000000561 INF: FPGA: Recv ZSGSRD 30702
17-03-18 01:23:47.670 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:47.670 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:47.670 -07 000000461 INF: FPGA: Recv ZSGSRD 30698
17-03-18 01:23:47.680 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:47.680 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:47.680 -07 000000569 INF: FPGA: Recv ZSGSRD 30703
17-03-18 01:23:47.690 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:47.690 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:48.220 -07 000000430 INF: FPGA: Recv ZSGSRD 30700
17-03-18 01:23:48.220 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 520 ms to get response, and 530 ms overall
17-03-18 01:23:48.220 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:48.220 -07 000000461 INF: FPGA: Recv ZSGSRD 30705
17-03-18 01:23:48.230 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:48.230 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:48.230 -07 000000455 INF: FPGA: Recv ZPIEZORD 26458
17-03-18 01:23:48.240 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:48.240 -07 000000479 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.585 V. Piezo Error = -9.3 V.
17-03-18 01:23:48.240 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30704 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30704 (-136.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30698 (-136.7 uncal um), Max = 30708 (-136.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:23:48.240 -07 000000479 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30704, posNoise = 4, negNoise = 6
17-03-18 01:23:48.240 -07 000000479 INF: Z Motor: After move to -0.137565, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:48.240 -07 000000479 INF: Z Motor: Settle wait time = 1472 ms, measure time = 626 ms (allowed 150 ms), total time = 2098 ms
17-03-18 01:23:48.240 -07 000000479 INF: Z Motor: Warning: Actual position measuring time = 626 ms, longer than max expected time of 150 ms
17-03-18 01:23:48.240 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2102 ms
17-03-18 01:23:48.240 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:23:48.240 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:48.240 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:48.240 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:23:48.240 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:48.240 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:48.240 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:48.240 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:48.250 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:23:48.250 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:23:48.250 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:23:48.250 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:23:48.260 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:23:48.260 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:23:48.310 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 01:23:48.610 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 01:23:48.610 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 01:23:48.610 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:23:48.610 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2672945024, 0x0, 559484976) start.
17-03-18 01:23:48.640 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:23:48.640 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 01:23:48.640 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:23:48.730 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2672945024, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:23:48.730 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:48.740 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:23:48.740 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:23:48.840 -07 000000455 INF: Autofocus start
17-03-18 01:23:48.840 -07 000000455 INF: MeasureProfile start
17-03-18 01:23:48.850 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:48.850 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:48.850 -07 000000455 INF: MeasureProfile done
17-03-18 01:23:48.850 -07 000000455 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:23:48.850 -07 000000455 INF: Autofocus finished
17-03-18 01:23:48.860 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:23:48.860 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:23:49.060 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:23:49.060 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:23:49.060 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137572361611763. ----------
17-03-18 01:23:49.060 -07 000000610 INF: Cycle	86	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:23:49.070 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28576, sync = True, waitForSettling = True)
17-03-18 01:23:49.070 -07 000000610 INF: Z Motor: Moving to -0.130813 mm, started at -0.137572 mm, distance = 6.76 um
17-03-18 01:23:49.070 -07 000000610 INF: FPGA: Xmit ZDACW 28576\n [Z Motor]
17-03-18 01:23:49.070 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:23:49.080 -07 000000610 INF: FPGA: 'ZDACW 28576' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:49.080 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:49.080 -07 000000479 INF: FPGA: Recv ZDACR 28576
17-03-18 01:23:49.090 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:49.090 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:23:49.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:49.240 -07 000000561 INF: FPGA: Recv ZSGSRD 29657
17-03-18 01:23:49.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:49.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:49.250 -07 000000455 INF: FPGA: Recv ZSGSRD 29648
17-03-18 01:23:49.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:49.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:49.260 -07 000000569 INF: FPGA: Recv ZSGSRD 29653
17-03-18 01:23:49.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:49.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:49.270 -07 000000461 INF: FPGA: Recv ZSGSRD 29650
17-03-18 01:23:49.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:49.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:49.280 -07 000000590 INF: FPGA: Recv ZSGSRD 29657
17-03-18 01:23:49.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:49.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:49.290 -07 000000561 INF: FPGA: Recv ZSGSRD 29654
17-03-18 01:23:49.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:49.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:49.300 -07 000000455 INF: FPGA: Recv ZSGSRD 29654
17-03-18 01:23:49.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:49.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:49.310 -07 000000455 INF: FPGA: Recv ZSGSRD 29655
17-03-18 01:23:49.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:49.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:49.320 -07 000000479 INF: FPGA: Recv ZSGSRD 29651
17-03-18 01:23:49.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:49.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:49.330 -07 000000438 INF: FPGA: Recv ZSGSRD 29649
17-03-18 01:23:49.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:49.340 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:49.340 -07 000000455 INF: FPGA: Recv ZPIEZORD 25048
17-03-18 01:23:49.350 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:49.350 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.360 V. Piezo Error = -10.1 V.
17-03-18 01:23:49.350 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29653 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29654 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29648 (-130.0 uncal um), Max = 29657 (-130.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:23:49.350 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29653, posNoise = 4, negNoise = 5
17-03-18 01:23:49.350 -07 000000610 INF: Z Motor: After move to -0.130813, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:49.350 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:23:49.350 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:49.350 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:49.350 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:49.350 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:23:49.350 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:23:49.350 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:23:49.350 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:49.350 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:49.350 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:23:49.350 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:23:49.350 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:49.350 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:23:49.360 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:23:49.360 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:23:49.360 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:23:49.360 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:23:49.370 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 01:23:49.370 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:23:49.370 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:23:49.370 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:23:49.370 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28752 150\n [Camera]
17-03-18 01:23:49.570 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:23:49.960 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:23:49.960 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:23:49.960 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:49.960 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:49.960 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 01:23:49.960 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:23:49.960 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:23:49.970 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:49.970 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:49.970 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 01:23:50.140 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.011254,
17-03-18 01:23:50.150 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28752 775
17-03-18 01:23:50.310 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:23:50.360 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:23:50.360 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:23:50.360 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:50.360 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:23:50.360 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:23:50.360 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:50.370 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:50.370 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:23:50.370 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:50.370 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:23:50.490 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:23:50.490 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:23:50.490 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:50.490 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:50.490 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:23:50.500 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:23:50.500 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:23:50.500 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:50.500 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:50.500 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 01:23:50.680 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:23:50.680 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:23:50.680 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28752 150' command took 2 ms to send, 1309 ms to get response, and 1312 ms overall
17-03-18 01:23:50.690 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:23:50.690 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.130820514650773. ------
17-03-18 01:23:50.690 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:50.690 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13744 mm
17-03-18 01:23:50.690 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:23:50.690 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 30023, sync = True, waitForSettling = False)
17-03-18 01:23:50.690 -07 000000455 INF: Z Motor: Moving to -0.137436 mm, started at -0.130821 mm, distance = -6.62 um
17-03-18 01:23:50.690 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:50.690 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:23:50.690 -07 000000461 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 01:23:50.700 -07 000000455 INF: FPGA: Xmit ZDACW 30023\n [Z Motor]
17-03-18 01:23:50.700 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:50.700 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:23:50.710 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:50.710 -07 000000455 INF: FPGA: 'ZDACW 30023' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:23:50.710 -07 000000576 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:23:50.720 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:23:50.720 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:23:50.720 -07 000000461 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:50.720 -07 000000461 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:23:50.720 -07 000000461 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:23:50.730 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:50.730 -07 000000591 INF: FPGA: Recv ZDACR 30023
17-03-18 01:23:50.740 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:23:50.740 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:23:50.740 -07 000000455 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 01:23:50.880 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 01:23:50.880 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:23:50.880 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:50.890 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:50.890 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:23:50.890 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:23:50.890 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:50.890 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:23:50.900 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:23:50.900 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:23:50.920 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:23:50.920 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:23:51.110 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 01:23:51.110 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:23:51.160 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:51.160 -07 000000455 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:23:51.170 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:23:51.170 -07 000000461 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:51.170 -07 000000461 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:23:51.170 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.136 mm/sec
17-03-18 01:23:52.120 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:52.120 -07 000000501 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:23:52.130 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:52.130 -07 000000461 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:52.160 -07 000000461 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:23:52.160 -07 000000461 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:23:52.160 -07 000000461 INF: Y Motor: Moved to 65.7139 after 1464 ms (table move)
17-03-18 01:23:52.160 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137436 mm (DAC = 30023)
17-03-18 01:23:52.160 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:52.160 -07 000000480 INF: FPGA: Recv ZSGSRD 30688
17-03-18 01:23:52.170 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:23:52.170 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:52.170 -07 000000467 INF: FPGA: Recv ZSGSRD 30681
17-03-18 01:23:52.180 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:52.180 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:52.180 -07 000000461 INF: FPGA: Recv ZSGSRD 30684
17-03-18 01:23:52.190 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:52.190 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:52.190 -07 000000480 INF: FPGA: Recv ZSGSRD 30686
17-03-18 01:23:52.200 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:52.200 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:52.200 -07 000000461 INF: FPGA: Recv ZSGSRD 30676
17-03-18 01:23:52.210 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:52.210 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:52.210 -07 000000467 INF: FPGA: Recv ZSGSRD 30681
17-03-18 01:23:52.220 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:52.220 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:52.220 -07 000000480 INF: FPGA: Recv ZSGSRD 30682
17-03-18 01:23:52.230 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:52.230 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:52.230 -07 000000461 INF: FPGA: Recv ZSGSRD 30681
17-03-18 01:23:52.240 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:52.240 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:52.240 -07 000000467 INF: FPGA: Recv ZSGSRD 30679
17-03-18 01:23:52.250 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:52.250 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:52.250 -07 000000461 INF: FPGA: Recv ZSGSRD 30689
17-03-18 01:23:52.250 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:23:52.260 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:52.260 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:52.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:23:52.260 -07 000000447 INF: FPGA: Recv ZPIEZORD 26466
17-03-18 01:23:52.270 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:52.270 -07 000000438 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.581 V. Piezo Error = -9.3 V.
17-03-18 01:23:52.270 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30683 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30682 (-136.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30676 (-136.6 uncal um), Max = 30689 (-136.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:23:52.270 -07 000000438 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30683, posNoise = 6, negNoise = 7
17-03-18 01:23:52.270 -07 000000438 INF: Z Motor: After move to -0.137436, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:52.270 -07 000000438 INF: Z Motor: Settle wait time = 1468 ms, measure time = 105 ms (allowed 150 ms), total time = 1573 ms
17-03-18 01:23:52.270 -07 000000438 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 01:23:52.320 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 01:23:52.320 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:23:52.320 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:52.320 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:52.320 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:23:52.320 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:52.320 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:52.320 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:52.320 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:52.320 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:23:52.330 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:23:52.330 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:23:52.330 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:23:52.330 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:23:52.340 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:23:52.380 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:23:52.680 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:23:52.680 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:23:52.680 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:23:52.680 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 01:23:52.720 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:23:52.720 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 01:23:52.720 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:23:52.800 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:23:52.800 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:52.800 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:23:52.800 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:23:52.820 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:52.820 -07 000000447 INF: Autofocus start
17-03-18 01:23:52.820 -07 000000447 INF: MeasureProfile start
17-03-18 01:23:52.820 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:52.830 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:52.830 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:23:52.830 -07 000000447 INF: MeasureProfile done
17-03-18 01:23:52.830 -07 000000447 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:23:52.830 -07 000000447 INF: Autofocus finished
17-03-18 01:23:53.030 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:23:53.030 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:23:53.030 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.137437453156786. ----------
17-03-18 01:23:53.040 -07 000000610 INF: Cycle	86	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:23:53.040 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28547, sync = True, waitForSettling = True)
17-03-18 01:23:53.040 -07 000000610 INF: Z Motor: Moving to -0.130680 mm, started at -0.137437 mm, distance = 6.76 um
17-03-18 01:23:53.040 -07 000000610 INF: FPGA: Xmit ZDACW 28547\n [Z Motor]
17-03-18 01:23:53.040 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:23:53.050 -07 000000610 INF: FPGA: 'ZDACW 28547' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:23:53.050 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:53.050 -07 000000447 INF: FPGA: Recv ZDACR 28547
17-03-18 01:23:53.060 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:53.060 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:23:53.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:53.210 -07 000000467 INF: FPGA: Recv ZSGSRD 29628
17-03-18 01:23:53.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:53.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:53.220 -07 000000447 INF: FPGA: Recv ZSGSRD 29635
17-03-18 01:23:53.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:53.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:53.230 -07 000000569 INF: FPGA: Recv ZSGSRD 29634
17-03-18 01:23:53.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:53.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:53.240 -07 000000590 INF: FPGA: Recv ZSGSRD 29633
17-03-18 01:23:53.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:53.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:53.250 -07 000000561 INF: FPGA: Recv ZSGSRD 29632
17-03-18 01:23:53.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:53.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:53.260 -07 000000590 INF: FPGA: Recv ZSGSRD 29633
17-03-18 01:23:53.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:53.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:53.270 -07 000000467 INF: FPGA: Recv ZSGSRD 29635
17-03-18 01:23:53.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:53.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:53.280 -07 000000590 INF: FPGA: Recv ZSGSRD 29633
17-03-18 01:23:53.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:53.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:53.290 -07 000000438 INF: FPGA: Recv ZSGSRD 29633
17-03-18 01:23:53.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:23:53.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:53.300 -07 000000590 INF: FPGA: Recv ZSGSRD 29633
17-03-18 01:23:53.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:53.310 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:53.310 -07 000000591 INF: FPGA: Recv ZPIEZORD 25071
17-03-18 01:23:53.320 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:53.320 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -10.0 V.
17-03-18 01:23:53.320 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29633 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29633 (-129.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29628 (-129.9 uncal um), Max = 29635 (-129.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:23:53.320 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29633, posNoise = 2, negNoise = 5
17-03-18 01:23:53.320 -07 000000610 INF: Z Motor: After move to -0.130680, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:53.320 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:23:53.320 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:53.320 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:53.320 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:53.320 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:53.320 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:23:53.320 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:23:53.320 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:53.320 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:23:53.320 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:53.320 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:23:53.320 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:23:53.320 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:23:53.330 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:23:53.330 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:23:53.330 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:23:53.330 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:23:53.340 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:23:53.340 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:23:53.340 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:23:53.340 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:23:53.340 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28724 150\n [Camera]
17-03-18 01:23:53.540 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:23:53.930 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:23:53.930 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:23:53.940 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:53.940 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:53.940 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) start.
17-03-18 01:23:53.940 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:23:53.940 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:23:53.940 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:53.940 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:53.940 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:23:54.130 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28724 775
17-03-18 01:23:54.280 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:23:54.330 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:23:54.330 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:23:54.330 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:54.340 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:23:54.340 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:23:54.340 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:54.340 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:54.340 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:23:54.340 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:54.350 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:23:54.470 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:23:54.470 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:23:54.470 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:54.470 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:54.470 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:23:54.470 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:23:54.470 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:23:54.470 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:54.470 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:54.470 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-18 01:23:54.660 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:23:54.660 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:23:54.660 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28724 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:23:54.660 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:23:54.660 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.130692030407937. ------
17-03-18 01:23:54.660 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:54.660 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13709 mm
17-03-18 01:23:54.660 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:23:54.670 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:23:54.670 -07 000000430 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-18 01:23:54.670 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:54.870 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:23:54.870 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:23:54.870 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:54.870 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:23:54.870 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:23:54.870 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:54.880 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:54.880 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:23:54.880 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 01:23:54.880 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:23:54.890 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29947, sync = True, waitForSettling = False)
17-03-18 01:23:54.890 -07 000000561 INF: Z Motor: Moving to -0.137089 mm, started at -0.130692 mm, distance = -6.40 um
17-03-18 01:23:54.890 -07 000000561 INF: FPGA: Xmit ZDACW 29947\n [Z Motor]
17-03-18 01:23:54.890 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:54.890 -07 000000590 INF: FPGA: Recv YRDPOS 134583
17-03-18 01:23:54.890 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:23:54.890 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 217 ms to get response, and 226 ms overall
17-03-18 01:23:54.890 -07 000000430 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:54.890 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 227 ms to get response, and 229 ms overall
17-03-18 01:23:54.900 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:23:54.900 -07 000000561 INF: FPGA: 'ZDACW 29947' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:54.900 -07 000000430 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:23:54.900 -07 000000430 INF: Y Motor: Moving 1341 steps-18
17-03-18 01:23:54.910 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:54.910 -07 000000590 INF: FPGA: Recv ZDACR 29947
17-03-18 01:23:54.920 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:23:54.920 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:23:54.920 -07 000000561 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 01:23:55.100 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:23:55.100 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 203 ms overall
17-03-18 01:23:55.290 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 01:23:55.290 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 01:23:55.340 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:55.340 -07 000000561 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:23:55.350 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:55.350 -07 000000430 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:55.350 -07 000000430 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:23:55.350 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.134 mm/sec
17-03-18 01:23:55.500 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.011254,
17-03-18 01:23:56.300 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:56.300 -07 000000590 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:23:56.310 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:56.310 -07 000000430 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:23:56.330 -07 000000430 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:23:56.330 -07 000000430 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:23:56.330 -07 000000430 INF: Y Motor: Moved to 66.5391 after 1667 ms (table move)
17-03-18 01:23:56.340 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137089 mm (DAC = 29947)
17-03-18 01:23:56.340 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:56.340 -07 000000479 INF: FPGA: Recv ZSGSRD 30635
17-03-18 01:23:56.350 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:56.350 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:56.350 -07 000000590 INF: FPGA: Recv ZSGSRD 30630
17-03-18 01:23:56.360 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:56.360 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:56.360 -07 000000479 INF: FPGA: Recv ZSGSRD 30630
17-03-18 01:23:56.370 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:56.370 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:56.370 -07 000000590 INF: FPGA: Recv ZSGSRD 30631
17-03-18 01:23:56.380 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:56.380 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:56.380 -07 000000467 INF: FPGA: Recv ZSGSRD 30633
17-03-18 01:23:56.390 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:56.390 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:56.390 -07 000000590 INF: FPGA: Recv ZSGSRD 30630
17-03-18 01:23:56.400 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:56.400 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:56.400 -07 000000561 INF: FPGA: Recv ZSGSRD 30625
17-03-18 01:23:56.410 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:56.410 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:56.410 -07 000000591 INF: FPGA: Recv ZSGSRD 30629
17-03-18 01:23:56.420 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:56.420 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:56.420 -07 000000479 INF: FPGA: Recv ZSGSRD 30621
17-03-18 01:23:56.430 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:56.430 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:56.430 -07 000000591 INF: FPGA: Recv ZSGSRD 30625
17-03-18 01:23:56.440 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:56.440 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:56.440 -07 000000438 INF: FPGA: Recv ZPIEZORD 26389
17-03-18 01:23:56.450 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:56.450 -07 000000447 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.570 V. Piezo Error = -9.3 V.
17-03-18 01:23:56.450 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30629 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30630 (-136.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30621 (-136.2 uncal um), Max = 30635 (-136.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:23:56.450 -07 000000447 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30629, posNoise = 6, negNoise = 8
17-03-18 01:23:56.450 -07 000000447 INF: Z Motor: After move to -0.137089, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:56.450 -07 000000447 INF: Z Motor: Settle wait time = 1450 ms, measure time = 107 ms (allowed 150 ms), total time = 1557 ms
17-03-18 01:23:56.450 -07 000000447 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:23:56.500 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1831 ms
17-03-18 01:23:56.500 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:23:56.500 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:56.500 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:56.500 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:56.500 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:23:56.500 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:56.500 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:56.500 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:56.500 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:23:56.510 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:23:56.510 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:23:56.520 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:23:56.520 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 01:23:56.520 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:23:56.560 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:23:56.860 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:23:56.860 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:23:56.860 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:23:56.860 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-18 01:23:56.900 -07 000000447 INF: FPGA: Recv @CAMSNAP 381
17-03-18 01:23:56.910 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 01:23:56.910 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 388 ms overall
17-03-18 01:23:56.980 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 01:23:56.980 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:56.980 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:23:56.980 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 01:23:57.010 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:57.010 -07 000000480 INF: Autofocus start
17-03-18 01:23:57.010 -07 000000480 INF: MeasureProfile start
17-03-18 01:23:57.010 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:23:57.020 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:23:57.020 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:23:57.030 -07 000000480 INF: MeasureProfile done
17-03-18 01:23:57.030 -07 000000480 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 01:23:57.030 -07 000000480 INF: Autofocus finished
17-03-18 01:23:57.220 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:23:57.220 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:23:57.230 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137090545701131. ----------
17-03-18 01:23:57.230 -07 000000610 INF: Cycle	86	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:23:57.230 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28424, sync = True, waitForSettling = True)
17-03-18 01:23:57.230 -07 000000610 INF: Z Motor: Moving to -0.130117 mm, started at -0.137091 mm, distance = 6.97 um
17-03-18 01:23:57.230 -07 000000610 INF: FPGA: Xmit ZDACW 28424\n [Z Motor]
17-03-18 01:23:57.230 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:23:57.240 -07 000000610 INF: FPGA: 'ZDACW 28424' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:23:57.240 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:23:57.240 -07 000000591 INF: FPGA: Recv ZDACR 28424
17-03-18 01:23:57.250 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:57.250 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:23:57.250 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:23:57.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:23:57.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:57.400 -07 000000591 INF: FPGA: Recv ZSGSRD 29545
17-03-18 01:23:57.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:23:57.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:57.410 -07 000000467 INF: FPGA: Recv ZSGSRD 29542
17-03-18 01:23:57.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:57.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:57.420 -07 000000591 INF: FPGA: Recv ZSGSRD 29542
17-03-18 01:23:57.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:57.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:57.430 -07 000000438 INF: FPGA: Recv ZSGSRD 29555
17-03-18 01:23:57.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:57.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:57.440 -07 000000591 INF: FPGA: Recv ZSGSRD 29553
17-03-18 01:23:57.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:57.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:57.450 -07 000000438 INF: FPGA: Recv ZSGSRD 29542
17-03-18 01:23:57.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:57.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:57.460 -07 000000430 INF: FPGA: Recv ZSGSRD 29547
17-03-18 01:23:57.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:57.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:57.470 -07 000000438 INF: FPGA: Recv ZSGSRD 29547
17-03-18 01:23:57.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:57.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:57.480 -07 000000591 INF: FPGA: Recv ZSGSRD 29545
17-03-18 01:23:57.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:57.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:23:57.490 -07 000000480 INF: FPGA: Recv ZSGSRD 29535
17-03-18 01:23:57.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:57.500 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:23:57.500 -07 000000590 INF: FPGA: Recv ZPIEZORD 24943
17-03-18 01:23:57.510 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:23:57.510 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -10.1 V.
17-03-18 01:23:57.510 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29545 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29545 (-129.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 29535 (-129.3 uncal um), Max = 29555 (-129.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:23:57.510 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29545, posNoise = 10, negNoise = 10
17-03-18 01:23:57.510 -07 000000610 INF: Z Motor: After move to -0.130117, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:23:57.510 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:23:57.510 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:23:57.510 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:23:57.510 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:23:57.510 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:23:57.510 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:23:57.510 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:23:57.510 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:23:57.510 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:23:57.510 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:23:57.510 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:23:57.510 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:23:57.510 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:23:57.520 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:23:57.520 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:23:57.520 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:23:57.520 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:23:57.530 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:23:57.530 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:23:57.530 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:23:57.530 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:23:57.530 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28601 150\n [Camera]
17-03-18 01:23:57.730 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:23:58.120 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:23:58.120 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:23:58.120 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:58.120 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:58.120 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2420328552, 0x0, 391868352) start.
17-03-18 01:23:58.120 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:23:58.120 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:23:58.120 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:58.120 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:58.120 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2455750816, 0x0, 418435064) start.
17-03-18 01:23:58.310 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28601 775
17-03-18 01:23:58.460 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:23:58.520 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2420328552, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:23:58.520 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:23:58.520 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:58.520 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2455750816, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:23:58.520 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:23:58.520 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:58.520 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:58.520 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:23:58.530 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:23:58.530 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:23:58.650 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:23:58.650 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:23:58.650 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:23:58.650 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:23:58.650 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2491173080, 0x0, 391868352) start.
17-03-18 01:23:58.650 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:23:58.650 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:23:58.650 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:23:58.790 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:23:58.790 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:23:58.840 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:23:58.840 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:23:58.840 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28601 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-18 01:23:58.840 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:23:58.840 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130126699739463. ------
17-03-18 01:23:58.850 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:23:58.850 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13696 mm
17-03-18 01:23:58.850 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:23:58.850 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:23:58.850 -07 000000438 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 01:23:58.850 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29918, sync = True, waitForSettling = False)
17-03-18 01:23:58.850 -07 000000590 INF: Z Motor: Moving to -0.136956 mm, started at -0.130127 mm, distance = -6.83 um
17-03-18 01:23:58.860 -07 000000590 INF: FPGA: Xmit ZDACW 29918\n [Z Motor]
17-03-18 01:23:58.870 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:23:59.060 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2491173080, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 01:23:59.060 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:23:59.060 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:59.060 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:23:59.060 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 01:23:59.180 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 01:23:59.180 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:23:59.180 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:23:59.180 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:23:59.190 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 534 ms.
17-03-18 01:24:00.000 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:00.000 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 01:24:00.000 -07 000000447 INF: FPGA: Recv YRDPOS 136273
17-03-18 01:24:00.000 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1140 ms to get response, and 1148 ms overall
17-03-18 01:24:00.000 -07 000000590 INF: FPGA: 'ZDACW 29918' command took 0 ms to send, 1130 ms to get response, and 1144 ms overall
17-03-18 01:24:00.000 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:24:00.000 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1120 ms to get response, and 1145 ms overall
17-03-18 01:24:00.000 -07 000000438 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:00.000 -07 000000438 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:24:00.000 -07 000000438 INF: Y Motor: Moving 1349 steps-28
17-03-18 01:24:00.010 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:00.010 -07 000000501 INF: FPGA: Recv ZDACR 29918
17-03-18 01:24:00.020 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:24:00.020 -07 000000590 INF: Z Motor: MoveAbsStepped took 1164 ms (did NOT wait for settling yet))
17-03-18 01:24:00.020 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:24:00.200 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:24:00.200 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 01:24:00.390 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 01:24:00.390 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 01:24:00.440 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:00.450 -07 000000590 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:24:00.450 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:24:00.450 -07 000000438 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:00.450 -07 000000438 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 01:24:00.450 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.146 mm/sec
17-03-18 01:24:00.860 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.012614,
17-03-18 01:24:01.400 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:01.400 -07 000000447 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:24:01.410 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:01.410 -07 000000438 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:01.430 -07 000000438 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:24:01.430 -07 000000438 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:24:01.430 -07 000000438 INF: Y Motor: Moved to 67.3721 after 2582 ms (table move)
17-03-18 01:24:01.440 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136956 mm (DAC = 29918)
17-03-18 01:24:01.440 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:01.440 -07 000000480 INF: FPGA: Recv ZSGSRD 30606
17-03-18 01:24:01.450 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:24:01.450 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:01.450 -07 000000455 INF: FPGA: Recv ZSGSRD 30611
17-03-18 01:24:01.460 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:01.460 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:01.460 -07 000000447 INF: FPGA: Recv ZSGSRD 30611
17-03-18 01:24:01.470 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:01.470 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:01.470 -07 000000455 INF: FPGA: Recv ZSGSRD 30608
17-03-18 01:24:01.480 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:01.480 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:01.480 -07 000000480 INF: FPGA: Recv ZSGSRD 30607
17-03-18 01:24:01.490 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:01.490 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:01.490 -07 000000501 INF: FPGA: Recv ZSGSRD 30605
17-03-18 01:24:01.500 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:01.500 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:01.500 -07 000000480 INF: FPGA: Recv ZSGSRD 30607
17-03-18 01:24:01.510 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:01.510 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:01.510 -07 000000438 INF: FPGA: Recv ZSGSRD 30602
17-03-18 01:24:01.520 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:01.520 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:01.520 -07 000000590 INF: FPGA: Recv ZSGSRD 30607
17-03-18 01:24:01.530 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:01.530 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:01.530 -07 000000447 INF: FPGA: Recv ZSGSRD 30610
17-03-18 01:24:01.540 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:01.540 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:01.540 -07 000000501 INF: FPGA: Recv ZPIEZORD 26364
17-03-18 01:24:01.550 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:01.550 -07 000000430 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.565 V. Piezo Error = -9.3 V.
17-03-18 01:24:01.550 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30607 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30607 (-136.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30602 (-136.1 uncal um), Max = 30611 (-136.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:24:01.550 -07 000000430 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30607, posNoise = 4, negNoise = 5
17-03-18 01:24:01.550 -07 000000430 INF: Z Motor: After move to -0.136956, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:01.550 -07 000000430 INF: Z Motor: Settle wait time = 2585 ms, measure time = 109 ms (allowed 150 ms), total time = 2694 ms
17-03-18 01:24:01.550 -07 000000430 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:24:01.600 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2747 ms
17-03-18 01:24:01.600 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:24:01.600 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:01.600 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:01.600 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:01.600 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:01.600 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:24:01.600 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:01.600 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:24:01.600 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:24:01.610 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:24:01.610 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:24:01.610 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 01:24:01.610 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:24:01.620 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:24:01.660 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:24:01.960 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:24:01.960 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:24:01.960 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:24:01.960 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 01:24:02.000 -07 000000501 INF: FPGA: Recv @CAMSNAP 384
17-03-18 01:24:02.010 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 01:24:02.010 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 391 ms overall
17-03-18 01:24:02.090 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 01:24:02.090 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:02.090 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:24:02.090 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:24:02.110 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:02.110 -07 000000430 INF: Autofocus start
17-03-18 01:24:02.110 -07 000000430 INF: MeasureProfile start
17-03-18 01:24:02.110 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:02.120 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:24:02.120 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:24:02.120 -07 000000430 INF: MeasureProfile done
17-03-18 01:24:02.120 -07 000000430 INF: X=31  Z correction [um]=0.1251737
17-03-18 01:24:02.120 -07 000000430 INF: Autofocus finished
17-03-18 01:24:02.260 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:24:02.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:24:02.320 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:24:02.320 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:24:02.320 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.136949213034013. ----------
17-03-18 01:24:02.320 -07 000000610 INF: Cycle	86	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:24:02.330 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28458, sync = True, waitForSettling = True)
17-03-18 01:24:02.330 -07 000000610 INF: Z Motor: Moving to -0.130272 mm, started at -0.136949 mm, distance = 6.68 um
17-03-18 01:24:02.330 -07 000000610 INF: FPGA: Xmit ZDACW 28458\n [Z Motor]
17-03-18 01:24:02.330 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:24:02.340 -07 000000610 INF: FPGA: 'ZDACW 28458' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:02.340 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:02.340 -07 000000590 INF: FPGA: Recv ZDACR 28458
17-03-18 01:24:02.350 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:02.350 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:24:02.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:02.500 -07 000000480 INF: FPGA: Recv ZSGSRD 29572
17-03-18 01:24:02.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:02.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:02.510 -07 000000438 INF: FPGA: Recv ZSGSRD 29567
17-03-18 01:24:02.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:02.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:02.520 -07 000000480 INF: FPGA: Recv ZSGSRD 29569
17-03-18 01:24:02.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:02.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:02.530 -07 000000438 INF: FPGA: Recv ZSGSRD 29570
17-03-18 01:24:02.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:02.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:02.540 -07 000000455 INF: FPGA: Recv ZSGSRD 29564
17-03-18 01:24:02.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:02.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:02.550 -07 000000430 INF: FPGA: Recv ZSGSRD 29571
17-03-18 01:24:02.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:02.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:02.560 -07 000000590 INF: FPGA: Recv ZSGSRD 29569
17-03-18 01:24:02.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:02.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:02.570 -07 000000430 INF: FPGA: Recv ZSGSRD 29569
17-03-18 01:24:02.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:02.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:02.580 -07 000000438 INF: FPGA: Recv ZSGSRD 29569
17-03-18 01:24:02.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:02.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:02.590 -07 000000480 INF: FPGA: Recv ZSGSRD 29563
17-03-18 01:24:02.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:02.600 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:02.600 -07 000000430 INF: FPGA: Recv ZPIEZORD 24978
17-03-18 01:24:02.610 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:02.610 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.342 V. Piezo Error = -10.1 V.
17-03-18 01:24:02.610 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29568 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29569 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29563 (-129.5 uncal um), Max = 29572 (-129.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:24:02.610 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29568, posNoise = 4, negNoise = 5
17-03-18 01:24:02.610 -07 000000610 INF: Z Motor: After move to -0.130272, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:02.610 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:24:02.610 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:02.610 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:02.610 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:02.610 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:02.610 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:24:02.610 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:24:02.610 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:24:02.610 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:02.610 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:24:02.610 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:24:02.610 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:24:02.610 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:24:02.620 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:24:02.620 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:24:02.620 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:24:02.620 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:24:02.630 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:24:02.630 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:24:02.630 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:24:02.630 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:24:02.630 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28635 150\n [Camera]
17-03-18 01:24:02.830 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:24:03.220 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:24:03.220 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:24:03.220 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:03.230 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:24:03.230 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:24:03.230 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:03.230 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:03.230 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:24:03.230 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:03.230 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:24:03.420 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28635 775
17-03-18 01:24:03.570 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:24:03.630 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:24:03.630 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:24:03.630 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:03.630 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:24:03.630 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:24:03.630 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:03.630 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:03.630 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:24:03.630 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:03.640 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:24:03.750 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:24:03.750 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:24:03.760 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:03.760 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:24:03.760 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:24:03.760 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:03.880 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:03.880 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 01:24:03.880 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:03.880 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:24:03.950 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:24:03.950 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:24:03.950 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28635 150' command took 2 ms to send, 1301 ms to get response, and 1313 ms overall
17-03-18 01:24:03.950 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:24:03.950 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130274456618723. ------
17-03-18 01:24:03.950 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:03.950 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13665 mm
17-03-18 01:24:03.950 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:24:03.950 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:24:03.950 -07 000000590 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 01:24:03.950 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:03.960 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:24:03.960 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:24:03.960 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29852, sync = True, waitForSettling = False)
17-03-18 01:24:03.960 -07 000000438 INF: Z Motor: Moving to -0.136654 mm, started at -0.130274 mm, distance = -6.38 um
17-03-18 01:24:03.970 -07 000000438 INF: FPGA: Xmit ZDACW 29852\n [Z Motor]
17-03-18 01:24:03.970 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 01:24:03.980 -07 000000438 INF: FPGA: 'ZDACW 29852' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:24:03.980 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:03.980 -07 000000561 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:24:03.990 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 01:24:03.990 -07 000000590 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:03.990 -07 000000590 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:24:03.990 -07 000000590 INF: Y Motor: Moving 1345 steps-22
17-03-18 01:24:03.990 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:24:04.000 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:04.000 -07 000000561 INF: FPGA: Recv ZDACR 29852
17-03-18 01:24:04.010 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:24:04.010 -07 000000438 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 01:24:04.160 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:24:04.160 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:24:04.280 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:24:04.280 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:24:04.280 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:04.280 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:24:04.280 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:24:04.280 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:04.280 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:24:04.280 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 01:24:04.280 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:24:04.290 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 530 ms.
17-03-18 01:24:04.360 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 01:24:04.360 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 01:24:04.410 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:04.410 -07 000000430 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:24:04.420 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:24:04.420 -07 000000590 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:04.420 -07 000000590 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:24:04.420 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.841 mm, average velocity = 2.224 mm/sec
17-03-18 01:24:05.370 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:05.370 -07 000000569 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:24:05.380 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:05.380 -07 000000590 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:05.400 -07 000000590 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:24:05.400 -07 000000590 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:24:05.400 -07 000000590 INF: Y Motor: Moved to 68.2051 after 1447 ms (table move)
17-03-18 01:24:05.410 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136654 mm (DAC = 29852)
17-03-18 01:24:05.410 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:05.410 -07 000000430 INF: FPGA: Recv ZSGSRD 30554
17-03-18 01:24:05.420 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:24:05.420 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:05.420 -07 000000430 INF: FPGA: Recv ZSGSRD 30564
17-03-18 01:24:05.430 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:05.430 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:05.430 -07 000000590 INF: FPGA: Recv ZSGSRD 30565
17-03-18 01:24:05.440 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:05.440 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:05.440 -07 000000430 INF: FPGA: Recv ZSGSRD 30561
17-03-18 01:24:05.450 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:05.450 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:05.450 -07 000000590 INF: FPGA: Recv ZSGSRD 30559
17-03-18 01:24:05.460 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:05.460 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:05.460 -07 000000590 INF: FPGA: Recv ZSGSRD 30561
17-03-18 01:24:05.470 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:05.470 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:05.470 -07 000000430 INF: FPGA: Recv ZSGSRD 30561
17-03-18 01:24:05.480 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:05.480 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:05.480 -07 000000430 INF: FPGA: Recv ZSGSRD 30558
17-03-18 01:24:05.490 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:05.490 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:05.490 -07 000000430 INF: FPGA: Recv ZSGSRD 30563
17-03-18 01:24:05.500 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:05.500 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:05.500 -07 000000430 INF: FPGA: Recv ZSGSRD 30560
17-03-18 01:24:05.510 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:05.510 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:05.510 -07 000000590 INF: FPGA: Recv ZPIEZORD 26308
17-03-18 01:24:05.520 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:05.520 -07 000000447 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.555 V. Piezo Error = -9.4 V.
17-03-18 01:24:05.520 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30561 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30561 (-135.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30554 (-135.8 uncal um), Max = 30565 (-135.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:24:05.520 -07 000000447 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30561, posNoise = 4, negNoise = 7
17-03-18 01:24:05.520 -07 000000447 INF: Z Motor: After move to -0.136654, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:05.520 -07 000000447 INF: Z Motor: Settle wait time = 1451 ms, measure time = 108 ms (allowed 150 ms), total time = 1559 ms
17-03-18 01:24:05.520 -07 000000447 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:24:05.570 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 01:24:05.570 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:24:05.570 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:05.570 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:05.570 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:05.570 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:05.570 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:24:05.570 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:05.580 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:24:05.580 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:24:05.580 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:24:05.580 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:24:05.580 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:24:05.580 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:24:05.590 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:24:05.630 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:24:05.930 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:24:05.930 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:24:05.930 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:24:05.930 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-18 01:24:05.970 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:24:05.970 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 01:24:05.970 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:24:06.060 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:24:06.060 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:06.060 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:24:06.060 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:24:06.070 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:06.070 -07 000000430 INF: Autofocus start
17-03-18 01:24:06.070 -07 000000430 INF: MeasureProfile start
17-03-18 01:24:06.070 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:06.080 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:24:06.080 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:24:06.080 -07 000000430 INF: MeasureProfile done
17-03-18 01:24:06.080 -07 000000430 INF: X=-2  Z correction [um]=-0.01313862
17-03-18 01:24:06.080 -07 000000430 INF: Autofocus finished
17-03-18 01:24:06.220 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.011254,
17-03-18 01:24:06.280 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:24:06.280 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:24:06.280 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.136653699275492. ----------
17-03-18 01:24:06.280 -07 000000610 INF: Cycle	86	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:24:06.290 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28362, sync = True, waitForSettling = True)
17-03-18 01:24:06.290 -07 000000610 INF: Z Motor: Moving to -0.129833 mm, started at -0.136654 mm, distance = 6.82 um
17-03-18 01:24:06.290 -07 000000610 INF: FPGA: Xmit ZDACW 28362\n [Z Motor]
17-03-18 01:24:06.290 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:24:06.300 -07 000000610 INF: FPGA: 'ZDACW 28362' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:24:06.300 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:06.300 -07 000000430 INF: FPGA: Recv ZDACR 28362
17-03-18 01:24:06.310 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:06.310 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:24:06.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:06.460 -07 000000590 INF: FPGA: Recv ZSGSRD 29502
17-03-18 01:24:06.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:06.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:06.470 -07 000000430 INF: FPGA: Recv ZSGSRD 29498
17-03-18 01:24:06.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:06.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:06.480 -07 000000591 INF: FPGA: Recv ZSGSRD 29500
17-03-18 01:24:06.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:06.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:06.490 -07 000000467 INF: FPGA: Recv ZSGSRD 29498
17-03-18 01:24:06.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:06.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:06.500 -07 000000569 INF: FPGA: Recv ZSGSRD 29501
17-03-18 01:24:06.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:06.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:06.510 -07 000000467 INF: FPGA: Recv ZSGSRD 29498
17-03-18 01:24:06.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:06.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:06.520 -07 000000591 INF: FPGA: Recv ZSGSRD 29502
17-03-18 01:24:06.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:06.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:06.530 -07 000000590 INF: FPGA: Recv ZSGSRD 29502
17-03-18 01:24:06.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:06.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:06.540 -07 000000430 INF: FPGA: Recv ZSGSRD 29500
17-03-18 01:24:06.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:06.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:06.550 -07 000000590 INF: FPGA: Recv ZSGSRD 29495
17-03-18 01:24:06.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:06.560 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:06.560 -07 000000569 INF: FPGA: Recv ZPIEZORD 24902
17-03-18 01:24:06.570 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:06.570 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.328 V. Piezo Error = -10.1 V.
17-03-18 01:24:06.570 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29500 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29500 (-129.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29495 (-129.0 uncal um), Max = 29502 (-129.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:24:06.570 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29500, posNoise = 2, negNoise = 5
17-03-18 01:24:06.570 -07 000000610 INF: Z Motor: After move to -0.129833, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:06.570 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:24:06.570 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:06.570 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:06.570 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:06.570 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:06.570 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:24:06.570 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:06.570 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:24:06.570 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:24:06.570 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:24:06.570 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:24:06.570 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:24:06.570 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:24:06.580 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:24:06.580 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:24:06.580 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 01:24:06.580 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:24:06.590 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:24:06.590 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:24:06.590 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:24:06.590 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:24:06.600 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28539 150\n [Camera]
17-03-18 01:24:06.790 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:24:07.190 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:24:07.190 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:24:07.190 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:07.190 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:24:07.190 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:24:07.190 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:07.190 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:07.190 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:24:07.200 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:07.200 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:24:07.260 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:24:07.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:24:07.380 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28539 775
17-03-18 01:24:07.530 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:24:07.580 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 01:24:07.580 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 01:24:07.580 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:07.580 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:07.580 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:24:07.580 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:24:07.580 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:07.580 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:07.590 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:24:07.590 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:24:07.720 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:24:07.720 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:24:07.720 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:07.720 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:24:07.720 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:24:07.720 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:07.720 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:07.720 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:24:07.730 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:07.730 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:24:07.910 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:24:07.910 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:24:07.910 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28539 150' command took 2 ms to send, 1305 ms to get response, and 1315 ms overall
17-03-18 01:24:07.910 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:24:07.910 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.129837610193083. ------
17-03-18 01:24:07.920 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:07.920 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13652 mm
17-03-18 01:24:07.920 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:24:07.920 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:07.920 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:24:07.920 -07 000000479 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 01:24:07.920 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29823, sync = True, waitForSettling = False)
17-03-18 01:24:07.920 -07 000000501 INF: Z Motor: Moving to -0.136521 mm, started at -0.129838 mm, distance = -6.68 um
17-03-18 01:24:07.930 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:07.930 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:07.930 -07 000000576 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:24:07.940 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:24:07.940 -07 000000501 INF: FPGA: Xmit ZDACW 29823\n [Z Motor]
17-03-18 01:24:07.940 -07 000000479 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:07.940 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 01:24:07.940 -07 000000479 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:24:07.940 -07 000000479 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:24:07.950 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:24:07.950 -07 000000501 INF: FPGA: 'ZDACW 29823' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:24:07.960 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:24:07.970 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:07.970 -07 000000561 INF: FPGA: Recv ZDACR 29823
17-03-18 01:24:07.980 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:24:07.980 -07 000000501 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 01:24:08.120 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:24:08.120 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:24:08.120 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:08.130 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:24:08.130 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:24:08.130 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:08.130 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:24:08.130 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:24:08.130 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 01:24:08.140 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:24:08.150 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:24:08.150 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:24:08.330 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 01:24:08.330 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:24:08.380 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:08.380 -07 000000590 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:24:08.390 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:24:08.390 -07 000000479 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:08.390 -07 000000479 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:24:08.390 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.126 mm/sec
17-03-18 01:24:09.340 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:09.340 -07 000000590 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:24:09.350 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:09.350 -07 000000479 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:09.370 -07 000000479 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:24:09.370 -07 000000479 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:24:09.370 -07 000000479 INF: Y Motor: Moved to 69.0273 after 1452 ms (table move)
17-03-18 01:24:09.380 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136521 mm (DAC = 29823)
17-03-18 01:24:09.380 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:09.380 -07 000000479 INF: FPGA: Recv ZSGSRD 30537
17-03-18 01:24:09.390 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:09.390 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:09.390 -07 000000479 INF: FPGA: Recv ZSGSRD 30543
17-03-18 01:24:09.400 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:09.400 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:09.400 -07 000000479 INF: FPGA: Recv ZSGSRD 30552
17-03-18 01:24:09.410 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:09.410 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:09.410 -07 000000479 INF: FPGA: Recv ZSGSRD 30539
17-03-18 01:24:09.420 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:09.420 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:09.420 -07 000000479 INF: FPGA: Recv ZSGSRD 30541
17-03-18 01:24:09.430 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:09.430 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:09.430 -07 000000479 INF: FPGA: Recv ZSGSRD 30540
17-03-18 01:24:09.440 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:09.440 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:09.440 -07 000000479 INF: FPGA: Recv ZSGSRD 30544
17-03-18 01:24:09.450 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:09.450 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:09.450 -07 000000479 INF: FPGA: Recv ZSGSRD 30543
17-03-18 01:24:09.460 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:09.460 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:09.460 -07 000000590 INF: FPGA: Recv ZSGSRD 30533
17-03-18 01:24:09.470 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:09.470 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:09.470 -07 000000590 INF: FPGA: Recv ZSGSRD 30550
17-03-18 01:24:09.480 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:09.480 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:09.480 -07 000000590 INF: FPGA: Recv ZPIEZORD 26348
17-03-18 01:24:09.490 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:09.490 -07 000000591 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.551 V. Piezo Error = -9.2 V.
17-03-18 01:24:09.490 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30542 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30542 (-135.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30533 (-135.7 uncal um), Max = 30552 (-135.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:24:09.490 -07 000000591 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30542, posNoise = 10, negNoise = 9
17-03-18 01:24:09.490 -07 000000591 INF: Z Motor: After move to -0.136521, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:09.490 -07 000000591 INF: Z Motor: Settle wait time = 1455 ms, measure time = 110 ms (allowed 150 ms), total time = 1565 ms
17-03-18 01:24:09.490 -07 000000591 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:24:09.530 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 01:24:09.530 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:24:09.530 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:09.530 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:09.530 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:09.530 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:09.530 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:24:09.530 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:09.530 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:24:09.530 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:24:09.540 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:24:09.540 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:24:09.540 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:24:09.540 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:24:09.550 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:24:09.590 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:24:09.890 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:24:09.890 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:24:09.890 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:24:10.000 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:24:10.000 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:24:10.000 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 447 ms to get response, and 455 ms overall
17-03-18 01:24:10.000 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) start.
17-03-18 01:24:10.120 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:24:10.120 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:10.120 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:24:10.120 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 228 ms.
17-03-18 01:24:10.200 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:10.200 -07 000000590 INF: Autofocus start
17-03-18 01:24:10.200 -07 000000590 INF: MeasureProfile start
17-03-18 01:24:10.200 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:10.210 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:24:10.210 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:24:10.220 -07 000000590 INF: MeasureProfile done
17-03-18 01:24:10.220 -07 000000590 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 01:24:10.220 -07 000000590 INF: Autofocus finished
17-03-18 01:24:10.410 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:24:10.410 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 01:24:10.420 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136531639244798. ----------
17-03-18 01:24:10.420 -07 000000610 INF: Cycle	86	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:24:10.420 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28318, sync = True, waitForSettling = True)
17-03-18 01:24:10.420 -07 000000610 INF: Z Motor: Moving to -0.129631 mm, started at -0.136532 mm, distance = 6.90 um
17-03-18 01:24:10.420 -07 000000610 INF: FPGA: Xmit ZDACW 28318\n [Z Motor]
17-03-18 01:24:10.430 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:24:10.430 -07 000000610 INF: FPGA: 'ZDACW 28318' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:24:10.430 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:10.430 -07 000000590 INF: FPGA: Recv ZDACR 28318
17-03-18 01:24:10.440 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:10.440 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:24:10.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:10.590 -07 000000590 INF: FPGA: Recv ZSGSRD 29471
17-03-18 01:24:10.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:10.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:10.600 -07 000000591 INF: FPGA: Recv ZSGSRD 29465
17-03-18 01:24:10.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:10.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:10.610 -07 000000590 INF: FPGA: Recv ZSGSRD 29468
17-03-18 01:24:10.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:10.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:10.620 -07 000000479 INF: FPGA: Recv ZSGSRD 29467
17-03-18 01:24:10.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:10.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:10.630 -07 000000479 INF: FPGA: Recv ZSGSRD 29465
17-03-18 01:24:10.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:10.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:10.640 -07 000000455 INF: FPGA: Recv ZSGSRD 29471
17-03-18 01:24:10.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:10.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:10.650 -07 000000591 INF: FPGA: Recv ZSGSRD 29472
17-03-18 01:24:10.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:10.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:10.660 -07 000000455 INF: FPGA: Recv ZSGSRD 29469
17-03-18 01:24:10.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:10.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:10.670 -07 000000590 INF: FPGA: Recv ZSGSRD 29469
17-03-18 01:24:10.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:10.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:10.680 -07 000000455 INF: FPGA: Recv ZSGSRD 29472
17-03-18 01:24:10.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:10.690 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:10.690 -07 000000479 INF: FPGA: Recv ZPIEZORD 24925
17-03-18 01:24:10.700 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:10.700 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.321 V. Piezo Error = -10.0 V.
17-03-18 01:24:10.700 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29469 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29469 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29465 (-128.8 uncal um), Max = 29472 (-128.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:24:10.700 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29469, posNoise = 3, negNoise = 4
17-03-18 01:24:10.700 -07 000000610 INF: Z Motor: After move to -0.129631, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:10.700 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:24:10.700 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:10.700 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:10.700 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:10.700 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:10.700 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:24:10.700 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:24:10.700 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:24:10.700 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:10.700 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:24:10.700 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:24:10.700 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:24:10.700 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:24:10.710 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:24:10.710 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:24:10.710 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:24:10.710 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:24:10.720 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 01:24:10.720 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:24:10.720 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 01:24:10.720 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:24:10.720 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28495 150\n [Camera]
17-03-18 01:24:10.920 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:24:11.310 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:24:11.310 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:24:11.310 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:11.320 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:24:11.320 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:24:11.320 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:11.320 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:11.320 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-18 01:24:11.320 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:11.320 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:24:11.510 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28495 778
17-03-18 01:24:11.580 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 3.997626,
17-03-18 01:24:11.660 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:24:11.710 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:24:11.710 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:24:11.710 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:11.720 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:11.720 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:24:11.720 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:24:11.720 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:24:11.720 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:11.720 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:11.730 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:24:11.840 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:24:11.840 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:24:11.850 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:11.850 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:24:11.850 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:24:11.850 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:11.960 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:11.960 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:24:11.960 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:11.960 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:24:12.040 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:24:12.040 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:24:12.040 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28495 150' command took 2 ms to send, 1301 ms to get response, and 1312 ms overall
17-03-18 01:24:12.040 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:24:12.040 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129638459616689. ------
17-03-18 01:24:12.040 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:12.040 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13603 mm
17-03-18 01:24:12.040 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:24:12.040 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:24:12.040 -07 000000591 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 01:24:12.040 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:12.050 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:24:12.050 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:12.050 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29715, sync = True, waitForSettling = False)
17-03-18 01:24:12.050 -07 000000501 INF: Z Motor: Moving to -0.136027 mm, started at -0.129638 mm, distance = -6.39 um
17-03-18 01:24:12.050 -07 000000461 INF: FPGA: Recv YRDPOS 141369
17-03-18 01:24:12.060 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:12.060 -07 000000591 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:12.060 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:24:12.060 -07 000000591 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:24:12.060 -07 000000591 INF: Y Motor: Moving 1352 steps-31
17-03-18 01:24:12.070 -07 000000501 INF: FPGA: Xmit ZDACW 29715\n [Z Motor]
17-03-18 01:24:12.080 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:24:12.360 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:24:12.360 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:24:12.360 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:12.360 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:24:12.360 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:24:12.360 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:12.360 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:24:12.360 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:24:12.360 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 01:24:12.370 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-18 01:24:13.220 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:24:13.220 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:24:13.220 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:24:13.220 -07 000000501 INF: FPGA: 'ZDACW 29715' command took 0 ms to send, 1140 ms to get response, and 1169 ms overall
17-03-18 01:24:13.220 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 01:24:13.220 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:13.220 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 1131 ms to get response, and 1157 ms overall
17-03-18 01:24:13.220 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1150 ms to get response, and 1170 ms overall
17-03-18 01:24:13.220 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:24:13.220 -07 000000467 INF: FPGA: Recv ZDACR 29715
17-03-18 01:24:13.230 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:24:13.230 -07 000000501 INF: Z Motor: MoveAbsStepped took 1179 ms (did NOT wait for settling yet))
17-03-18 01:24:13.260 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:13.260 -07 000000501 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:24:13.270 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:24:13.270 -07 000000591 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:13.270 -07 000000591 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:24:13.270 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1158 ms, distance = 0.845 mm, average velocity = 0.730 mm/sec
17-03-18 01:24:14.220 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:14.220 -07 000000501 INF: FPGA: Recv YRDPOS 143081
17-03-18 01:24:14.230 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:14.230 -07 000000591 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:14.250 -07 000000591 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:24:14.250 -07 000000591 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:24:14.250 -07 000000591 INF: Y Motor: Moved to 69.8638 after 2207 ms (table move)
17-03-18 01:24:14.260 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136027 mm (DAC = 29715)
17-03-18 01:24:14.260 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:14.260 -07 000000430 INF: FPGA: Recv ZSGSRD 30468
17-03-18 01:24:14.270 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:24:14.270 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:14.270 -07 000000447 INF: FPGA: Recv ZSGSRD 30461
17-03-18 01:24:14.280 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:14.280 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:14.280 -07 000000591 INF: FPGA: Recv ZSGSRD 30470
17-03-18 01:24:14.290 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:14.290 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:14.290 -07 000000447 INF: FPGA: Recv ZSGSRD 30454
17-03-18 01:24:14.300 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:14.300 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:14.300 -07 000000430 INF: FPGA: Recv ZSGSRD 30466
17-03-18 01:24:14.310 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:14.310 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:14.310 -07 000000501 INF: FPGA: Recv ZSGSRD 30454
17-03-18 01:24:14.320 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:14.320 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:14.320 -07 000000447 INF: FPGA: Recv ZSGSRD 30462
17-03-18 01:24:14.330 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:14.330 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:14.330 -07 000000467 INF: FPGA: Recv ZSGSRD 30466
17-03-18 01:24:14.340 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:14.340 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:14.340 -07 000000591 INF: FPGA: Recv ZSGSRD 30457
17-03-18 01:24:14.350 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:14.350 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:14.350 -07 000000467 INF: FPGA: Recv ZSGSRD 30466
17-03-18 01:24:14.360 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:14.360 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:14.360 -07 000000430 INF: FPGA: Recv ZPIEZORD 26220
17-03-18 01:24:14.370 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:14.370 -07 000000455 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.534 V. Piezo Error = -9.3 V.
17-03-18 01:24:14.370 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30462 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30464 (-135.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30454 (-135.2 uncal um), Max = 30470 (-135.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:24:14.370 -07 000000455 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30462, posNoise = 8, negNoise = 8
17-03-18 01:24:14.370 -07 000000455 INF: Z Motor: After move to -0.136027, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:14.370 -07 000000455 INF: Z Motor: Settle wait time = 2211 ms, measure time = 109 ms (allowed 150 ms), total time = 2320 ms
17-03-18 01:24:14.370 -07 000000455 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:24:14.420 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2373 ms
17-03-18 01:24:14.420 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:24:14.420 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:14.420 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:14.420 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:24:14.420 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:14.420 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:14.420 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:14.420 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:24:14.420 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:24:14.430 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:24:14.430 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:24:14.430 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:24:14.430 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:24:14.440 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:24:14.480 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:24:14.780 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:24:14.780 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:24:14.780 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:24:14.780 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 01:24:14.820 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:24:14.820 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 01:24:14.820 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 01:24:14.900 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 01:24:14.900 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:14.900 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:24:14.900 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 01:24:14.920 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:14.920 -07 000000467 INF: Autofocus start
17-03-18 01:24:14.920 -07 000000467 INF: MeasureProfile start
17-03-18 01:24:14.920 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:14.930 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:24:14.930 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:24:14.930 -07 000000467 INF: MeasureProfile done
17-03-18 01:24:14.930 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:24:14.930 -07 000000467 INF: Autofocus finished
17-03-18 01:24:15.130 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:24:15.130 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:24:15.130 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.136017702273457. ----------
17-03-18 01:24:15.130 -07 000000610 INF: Cycle	86	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:24:15.140 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28239, sync = True, waitForSettling = True)
17-03-18 01:24:15.140 -07 000000610 INF: Z Motor: Moving to -0.129270 mm, started at -0.136018 mm, distance = 6.75 um
17-03-18 01:24:15.140 -07 000000610 INF: FPGA: Xmit ZDACW 28239\n [Z Motor]
17-03-18 01:24:15.140 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:24:15.150 -07 000000610 INF: FPGA: 'ZDACW 28239' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:24:15.150 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:15.150 -07 000000591 INF: FPGA: Recv ZDACR 28239
17-03-18 01:24:15.160 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:15.160 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:24:15.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:15.310 -07 000000447 INF: FPGA: Recv ZSGSRD 29407
17-03-18 01:24:15.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:15.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:15.320 -07 000000467 INF: FPGA: Recv ZSGSRD 29414
17-03-18 01:24:15.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:15.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:15.330 -07 000000430 INF: FPGA: Recv ZSGSRD 29417
17-03-18 01:24:15.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:15.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:15.340 -07 000000569 INF: FPGA: Recv ZSGSRD 29412
17-03-18 01:24:15.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:15.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:15.350 -07 000000501 INF: FPGA: Recv ZSGSRD 29410
17-03-18 01:24:15.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:15.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:15.360 -07 000000569 INF: FPGA: Recv ZSGSRD 29411
17-03-18 01:24:15.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:15.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:15.370 -07 000000467 INF: FPGA: Recv ZSGSRD 29416
17-03-18 01:24:15.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:15.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:15.380 -07 000000447 INF: FPGA: Recv ZSGSRD 29410
17-03-18 01:24:15.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:15.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:15.390 -07 000000569 INF: FPGA: Recv ZSGSRD 29407
17-03-18 01:24:15.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:15.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:15.400 -07 000000430 INF: FPGA: Recv ZSGSRD 29416
17-03-18 01:24:15.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:15.410 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:15.410 -07 000000591 INF: FPGA: Recv ZPIEZORD 24809
17-03-18 01:24:15.420 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:15.420 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.309 V. Piezo Error = -10.1 V.
17-03-18 01:24:15.420 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29412 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29412 (-128.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29407 (-128.5 uncal um), Max = 29417 (-128.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:24:15.420 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29412, posNoise = 5, negNoise = 5
17-03-18 01:24:15.420 -07 000000610 INF: Z Motor: After move to -0.129270, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:15.420 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:24:15.420 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:15.420 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:15.420 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:15.420 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:15.420 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:24:15.420 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:15.420 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:24:15.420 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:24:15.420 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:24:15.420 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:24:15.420 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:24:15.420 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:24:15.430 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:24:15.430 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:24:15.430 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:24:15.430 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:24:15.440 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:24:15.440 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:24:15.440 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:24:15.440 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:24:15.440 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28416 150\n [Camera]
17-03-18 01:24:15.640 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:24:16.030 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:24:16.030 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:24:16.040 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:16.040 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:24:16.040 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:24:16.040 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:16.040 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:16.040 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:24:16.040 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:16.040 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:24:16.230 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28416 775
17-03-18 01:24:16.380 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:24:16.420 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 01:24:16.420 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 01:24:16.420 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:16.420 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:16.430 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 01:24:16.430 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:24:16.430 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:16.430 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:24:16.430 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:16.430 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:24:16.570 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:24:16.570 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:24:16.570 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:16.570 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:24:16.570 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:24:16.570 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:16.570 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:16.570 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:24:16.580 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:16.580 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:24:16.760 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:24:16.760 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:24:16.760 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28416 150' command took 2 ms to send, 1301 ms to get response, and 1313 ms overall
17-03-18 01:24:16.760 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:24:16.760 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.129272279524608. ------
17-03-18 01:24:16.760 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:16.760 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13538 mm
17-03-18 01:24:16.760 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:24:16.770 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:16.770 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:24:16.770 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:24:16.770 -07 000000430 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-18 01:24:16.770 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29573, sync = True, waitForSettling = False)
17-03-18 01:24:16.770 -07 000000569 INF: Z Motor: Moving to -0.135377 mm, started at -0.129272 mm, distance = -6.10 um
17-03-18 01:24:16.770 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:24:16.780 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:16.780 -07 000000467 INF: FPGA: Recv YRDPOS 143081
17-03-18 01:24:16.790 -07 000000569 INF: FPGA: Xmit ZDACW 29573\n [Z Motor]
17-03-18 01:24:16.790 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:24:16.790 -07 000000430 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:16.790 -07 000000430 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:24:16.790 -07 000000430 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:24:16.790 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:24:16.800 -07 000000569 INF: FPGA: 'ZDACW 29573' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:24:16.800 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:16.800 -07 000000479 INF: FPGA: Recv ZDACR 29573
17-03-18 01:24:16.810 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:16.810 -07 000000569 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 01:24:16.810 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:24:16.940 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.011254,
17-03-18 01:24:16.970 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:24:16.970 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 01:24:16.980 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:24:16.980 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:24:16.980 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:24:16.980 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:24:16.980 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:16.980 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:16.980 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:24:16.980 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:24:16.980 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 01:24:16.990 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 01:24:17.180 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 01:24:17.180 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:24:17.230 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:17.230 -07 000000461 INF: FPGA: Recv YRDPOS 144769
17-03-18 01:24:17.240 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:24:17.240 -07 000000430 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:17.240 -07 000000430 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:24:17.240 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.108 mm/sec
17-03-18 01:24:17.260 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:24:17.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:24:18.190 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:18.190 -07 000000479 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:24:18.200 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:18.200 -07 000000430 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:18.220 -07 000000430 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:24:18.220 -07 000000430 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:24:18.220 -07 000000430 INF: Y Motor: Moved to 70.6885 after 1457 ms (table move)
17-03-18 01:24:18.230 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135377 mm (DAC = 29573)
17-03-18 01:24:18.230 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:18.230 -07 000000576 INF: FPGA: Recv ZSGSRD 30366
17-03-18 01:24:18.240 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:24:18.240 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:18.240 -07 000000438 INF: FPGA: Recv ZSGSRD 30367
17-03-18 01:24:18.250 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:18.250 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:18.250 -07 000000501 INF: FPGA: Recv ZSGSRD 30365
17-03-18 01:24:18.260 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:18.260 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:18.260 -07 000000569 INF: FPGA: Recv ZSGSRD 30364
17-03-18 01:24:18.270 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:18.270 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:18.270 -07 000000461 INF: FPGA: Recv ZSGSRD 30371
17-03-18 01:24:18.280 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:18.280 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:18.280 -07 000000569 INF: FPGA: Recv ZSGSRD 30362
17-03-18 01:24:18.290 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:18.290 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:18.290 -07 000000438 INF: FPGA: Recv ZSGSRD 30364
17-03-18 01:24:18.300 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:18.300 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:18.300 -07 000000569 INF: FPGA: Recv ZSGSRD 30355
17-03-18 01:24:18.310 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:18.310 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:18.310 -07 000000461 INF: FPGA: Recv ZSGSRD 30361
17-03-18 01:24:18.320 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:18.320 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:18.320 -07 000000501 INF: FPGA: Recv ZSGSRD 30371
17-03-18 01:24:18.330 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:18.330 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:18.330 -07 000000461 INF: FPGA: Recv ZPIEZORD 26125
17-03-18 01:24:18.340 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:18.340 -07 000000455 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -9.3 V.
17-03-18 01:24:18.340 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30365 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30364 (-134.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30355 (-134.5 uncal um), Max = 30371 (-134.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:24:18.340 -07 000000455 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30365, posNoise = 6, negNoise = 10
17-03-18 01:24:18.340 -07 000000455 INF: Z Motor: After move to -0.135377, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:18.340 -07 000000455 INF: Z Motor: Settle wait time = 1460 ms, measure time = 109 ms (allowed 150 ms), total time = 1569 ms
17-03-18 01:24:18.340 -07 000000455 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:24:18.390 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 01:24:18.390 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:24:18.390 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:18.390 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:18.390 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:18.390 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:24:18.390 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:18.390 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:18.390 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:24:18.390 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:24:18.400 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:24:18.400 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:24:18.400 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:24:18.400 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:24:18.410 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:24:18.460 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:24:18.750 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:24:18.760 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:24:18.760 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:24:18.760 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) start.
17-03-18 01:24:18.790 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:24:18.800 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 01:24:18.800 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 380 ms to get response, and 388 ms overall
17-03-18 01:24:18.880 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 01:24:18.880 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:18.880 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:24:18.880 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 01:24:18.900 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:18.900 -07 000000479 INF: Autofocus start
17-03-18 01:24:18.900 -07 000000479 INF: MeasureProfile start
17-03-18 01:24:18.900 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:18.910 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:24:18.910 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:24:18.910 -07 000000479 INF: MeasureProfile done
17-03-18 01:24:18.910 -07 000000479 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 01:24:18.910 -07 000000479 INF: Autofocus finished
17-03-18 01:24:19.110 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:24:19.110 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 01:24:19.110 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135394553695706. ----------
17-03-18 01:24:19.110 -07 000000610 INF: Cycle	86	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:24:19.120 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28051, sync = True, waitForSettling = True)
17-03-18 01:24:19.120 -07 000000610 INF: Z Motor: Moving to -0.128409 mm, started at -0.135395 mm, distance = 6.99 um
17-03-18 01:24:19.120 -07 000000610 INF: FPGA: Xmit ZDACW 28051\n [Z Motor]
17-03-18 01:24:19.120 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 01:24:19.130 -07 000000610 INF: FPGA: 'ZDACW 28051' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:24:19.130 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:19.130 -07 000000438 INF: FPGA: Recv ZDACR 28051
17-03-18 01:24:19.140 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:19.140 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:24:19.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:19.290 -07 000000455 INF: FPGA: Recv ZSGSRD 29282
17-03-18 01:24:19.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:19.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:19.300 -07 000000479 INF: FPGA: Recv ZSGSRD 29279
17-03-18 01:24:19.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:19.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:19.310 -07 000000455 INF: FPGA: Recv ZSGSRD 29276
17-03-18 01:24:19.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:19.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:19.320 -07 000000479 INF: FPGA: Recv ZSGSRD 29275
17-03-18 01:24:19.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:19.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:19.330 -07 000000455 INF: FPGA: Recv ZSGSRD 29278
17-03-18 01:24:19.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:19.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:19.340 -07 000000480 INF: FPGA: Recv ZSGSRD 29277
17-03-18 01:24:19.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:19.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:19.350 -07 000000455 INF: FPGA: Recv ZSGSRD 29277
17-03-18 01:24:19.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:19.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:19.360 -07 000000480 INF: FPGA: Recv ZSGSRD 29272
17-03-18 01:24:19.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:19.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:19.370 -07 000000501 INF: FPGA: Recv ZSGSRD 29283
17-03-18 01:24:19.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:19.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:19.380 -07 000000501 INF: FPGA: Recv ZSGSRD 29276
17-03-18 01:24:19.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:19.390 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:19.390 -07 000000569 INF: FPGA: Recv ZPIEZORD 24631
17-03-18 01:24:19.400 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:19.400 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.280 V. Piezo Error = -10.2 V.
17-03-18 01:24:19.400 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29278 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29277 (-127.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29272 (-127.6 uncal um), Max = 29283 (-127.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:24:19.400 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29278, posNoise = 5, negNoise = 6
17-03-18 01:24:19.400 -07 000000610 INF: Z Motor: After move to -0.128409, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:19.400 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:24:19.400 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:19.400 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:19.400 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:19.400 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:24:19.400 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:19.400 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:24:19.400 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:24:19.400 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:19.400 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:24:19.400 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:24:19.400 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:24:19.400 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:24:19.400 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:24:19.400 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:24:19.410 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:24:19.410 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:24:19.420 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:24:19.420 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:24:19.420 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:24:19.420 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:24:19.420 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28227 150\n [Camera]
17-03-18 01:24:19.620 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:24:20.020 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:24:20.020 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:24:20.020 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:20.020 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:20.020 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:24:20.020 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:24:20.020 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:24:20.020 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:20.020 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:20.020 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:24:20.210 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28227 775
17-03-18 01:24:20.360 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:24:20.420 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:24:20.420 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:24:20.420 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:20.420 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:20.420 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:24:20.420 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:24:20.420 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:24:20.420 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:20.420 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:20.430 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:24:20.550 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:24:20.550 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:24:20.550 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:20.550 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:20.550 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:24:20.550 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:24:20.550 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:24:20.550 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:20.550 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:20.550 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:24:20.740 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:24:20.740 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:24:20.740 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28227 150' command took 2 ms to send, 1301 ms to get response, and 1313 ms overall
17-03-18 01:24:20.740 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:24:20.740 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128411435097612. ------
17-03-18 01:24:20.740 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:20.740 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13506 mm
17-03-18 01:24:20.750 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:24:20.750 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:20.750 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:24:20.750 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:24:20.750 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:24:20.750 -07 000000591 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 01:24:20.750 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 29503, sync = True, waitForSettling = False)
17-03-18 01:24:20.750 -07 000000479 INF: Z Motor: Moving to -0.135056 mm, started at -0.128411 mm, distance = -6.64 um
17-03-18 01:24:20.760 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:20.760 -07 000000461 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:24:20.770 -07 000000479 INF: FPGA: Xmit ZDACW 29503\n [Z Motor]
17-03-18 01:24:20.770 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:24:20.770 -07 000000591 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:20.770 -07 000000591 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:24:20.770 -07 000000591 INF: Y Motor: Moving 1351 steps-30
17-03-18 01:24:20.770 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:24:20.780 -07 000000479 INF: FPGA: 'ZDACW 29503' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:24:20.780 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:20.780 -07 000000438 INF: FPGA: Recv ZDACR 29503
17-03-18 01:24:20.790 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:24:20.790 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:20.790 -07 000000479 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 01:24:20.940 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:24:20.940 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:24:20.940 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:20.940 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:24:20.940 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:24:20.940 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:20.940 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:20.950 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:24:20.950 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:24:20.950 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:24:20.950 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:24:20.950 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:24:21.160 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 01:24:21.160 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:24:21.210 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:21.210 -07 000000430 INF: FPGA: Recv YRDPOS 146470
17-03-18 01:24:21.220 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:24:21.220 -07 000000591 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:21.220 -07 000000591 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:24:21.220 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 01:24:22.170 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:22.170 -07 000000461 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:24:22.180 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:22.180 -07 000000591 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:22.200 -07 000000591 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:24:22.200 -07 000000591 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:24:22.200 -07 000000591 INF: Y Motor: Moved to 71.5190 after 1453 ms (table move)
17-03-18 01:24:22.210 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135056 mm (DAC = 29503)
17-03-18 01:24:22.210 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:22.210 -07 000000591 INF: FPGA: Recv ZSGSRD 30317
17-03-18 01:24:22.220 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:22.220 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:22.220 -07 000000591 INF: FPGA: Recv ZSGSRD 30309
17-03-18 01:24:22.230 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:22.230 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:22.230 -07 000000591 INF: FPGA: Recv ZSGSRD 30315
17-03-18 01:24:22.240 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:22.240 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:22.240 -07 000000455 INF: FPGA: Recv ZSGSRD 30318
17-03-18 01:24:22.250 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:22.250 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:22.250 -07 000000591 INF: FPGA: Recv ZSGSRD 30318
17-03-18 01:24:22.260 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:22.260 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:24:22.260 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:22.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:24:22.260 -07 000000561 INF: FPGA: Recv ZSGSRD 30322
17-03-18 01:24:22.270 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:22.270 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:22.270 -07 000000590 INF: FPGA: Recv ZSGSRD 30310
17-03-18 01:24:22.280 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:22.280 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:22.280 -07 000000461 INF: FPGA: Recv ZSGSRD 30308
17-03-18 01:24:22.290 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:22.300 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:22.300 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.001704,
17-03-18 01:24:22.300 -07 000000591 INF: FPGA: Recv ZSGSRD 30307
17-03-18 01:24:22.310 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:24:22.330 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:22.330 -07 000000467 INF: FPGA: Recv ZSGSRD 30313
17-03-18 01:24:22.340 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:24:22.340 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:22.340 -07 000000430 INF: FPGA: Recv ZPIEZORD 26066
17-03-18 01:24:22.350 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:22.350 -07 000000569 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.502 V. Piezo Error = -9.3 V.
17-03-18 01:24:22.350 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30314 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30314 (-134.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30307 (-134.2 uncal um), Max = 30322 (-134.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:24:22.350 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30314, posNoise = 8, negNoise = 7
17-03-18 01:24:22.350 -07 000000569 INF: Z Motor: After move to -0.135056, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:22.350 -07 000000569 INF: Z Motor: Settle wait time = 1456 ms, measure time = 140 ms (allowed 150 ms), total time = 1596 ms
17-03-18 01:24:22.350 -07 000000569 INF: Z Motor: Waiting extra 10 ms after reading position to reach expected total of 150 ms
17-03-18 01:24:22.360 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 01:24:22.360 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:24:22.360 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:22.360 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:22.360 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:22.360 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:22.360 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:24:22.360 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:22.360 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:24:22.360 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:24:22.370 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:24:22.370 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:24:22.380 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:24:22.380 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:24:22.380 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:24:22.420 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:24:22.720 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:24:22.720 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:24:22.720 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:24:22.730 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619685872, 0x0, 559484976) start.
17-03-18 01:24:22.760 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:24:22.760 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 01:24:22.760 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:24:22.850 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619685872, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:24:22.850 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:22.850 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:24:22.850 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:24:22.960 -07 000000438 INF: Autofocus start
17-03-18 01:24:22.960 -07 000000438 INF: MeasureProfile start
17-03-18 01:24:22.960 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:22.960 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:22.970 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:24:22.970 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:24:22.970 -07 000000438 INF: MeasureProfile done
17-03-18 01:24:22.970 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:24:22.970 -07 000000438 INF: Autofocus finished
17-03-18 01:24:23.170 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:24:23.170 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:24:23.170 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135066918876477. ----------
17-03-18 01:24:23.170 -07 000000610 INF: Cycle	86	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:24:23.180 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28011, sync = True, waitForSettling = True)
17-03-18 01:24:23.180 -07 000000610 INF: Z Motor: Moving to -0.128226 mm, started at -0.135067 mm, distance = 6.84 um
17-03-18 01:24:23.180 -07 000000610 INF: FPGA: Xmit ZDACW 28011\n [Z Motor]
17-03-18 01:24:23.180 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 01:24:23.190 -07 000000610 INF: FPGA: 'ZDACW 28011' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:24:23.190 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:23.190 -07 000000479 INF: FPGA: Recv ZDACR 28011
17-03-18 01:24:23.200 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:23.200 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:24:23.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:23.350 -07 000000618 INF: FPGA: Recv ZSGSRD 29255
17-03-18 01:24:23.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:23.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:23.360 -07 000000501 INF: FPGA: Recv ZSGSRD 29258
17-03-18 01:24:23.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:23.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:23.370 -07 000000461 INF: FPGA: Recv ZSGSRD 29242
17-03-18 01:24:23.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:23.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:23.380 -07 000000608 INF: FPGA: Recv ZSGSRD 29252
17-03-18 01:24:23.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:23.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:23.390 -07 000000501 INF: FPGA: Recv ZSGSRD 29250
17-03-18 01:24:23.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:23.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:23.400 -07 000000576 INF: FPGA: Recv ZSGSRD 29245
17-03-18 01:24:23.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:23.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:23.410 -07 000000438 INF: FPGA: Recv ZSGSRD 29251
17-03-18 01:24:23.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:23.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:23.420 -07 000000576 INF: FPGA: Recv ZSGSRD 29250
17-03-18 01:24:23.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:23.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:23.430 -07 000000608 INF: FPGA: Recv ZSGSRD 29256
17-03-18 01:24:23.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:23.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:23.440 -07 000000569 INF: FPGA: Recv ZSGSRD 29243
17-03-18 01:24:23.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:23.450 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:23.450 -07 000000608 INF: FPGA: Recv ZPIEZORD 24675
17-03-18 01:24:23.460 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:23.460 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.274 V. Piezo Error = -10.0 V.
17-03-18 01:24:23.460 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29250 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29250 (-127.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29242 (-127.4 uncal um), Max = 29258 (-127.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:24:23.460 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29250, posNoise = 8, negNoise = 8
17-03-18 01:24:23.460 -07 000000610 INF: Z Motor: After move to -0.128226, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:23.460 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:24:23.460 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:23.460 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:23.460 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:23.460 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:24:23.460 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:23.460 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:24:23.460 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:24:23.460 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:23.460 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 01:24:23.460 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:24:23.460 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-18 01:24:23.460 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:24:23.470 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:24:23.470 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:24:23.470 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:24:23.470 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:24:23.480 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:24:23.480 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:24:23.480 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:24:23.480 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:24:23.480 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28188 150\n [Camera]
17-03-18 01:24:23.680 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:24:24.070 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:24:24.070 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:24:24.070 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:24.070 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:24.070 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:24:24.070 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:24:24.070 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:24:24.070 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:24.070 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:24.070 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:24:24.260 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28188 775
17-03-18 01:24:24.420 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:24:24.470 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:24:24.470 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:24:24.470 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:24.470 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:24.470 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:24:24.470 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:24:24.470 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:24:24.470 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:24.480 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:24.480 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:24:24.600 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:24:24.600 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:24:24.600 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:24.600 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:24.600 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:24:24.600 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:24:24.600 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:24:24.600 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:24.600 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:24.600 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 01:24:24.790 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:24:24.790 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:24:24.790 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28188 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-18 01:24:24.790 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:24:24.790 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128231557157643. ------
17-03-18 01:24:24.800 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:24.800 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13459 mm
17-03-18 01:24:24.800 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:24:24.800 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:24.800 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:24:24.800 -07 000000438 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 01:24:24.800 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29401, sync = True, waitForSettling = False)
17-03-18 01:24:24.800 -07 000000480 INF: Z Motor: Moving to -0.134589 mm, started at -0.128232 mm, distance = -6.36 um
17-03-18 01:24:24.810 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:24.810 -07 000000480 INF: FPGA: Xmit ZDACW 29401\n [Z Motor]
17-03-18 01:24:24.810 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:24:24.820 -07 000000480 INF: FPGA: 'ZDACW 29401' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:24:24.820 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:24.820 -07 000000501 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:24:24.830 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:24:24.830 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:24:24.830 -07 000000438 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:24.830 -07 000000438 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:24:24.830 -07 000000438 INF: Y Motor: Moving 1350 steps-29
17-03-18 01:24:24.840 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:24.840 -07 000000501 INF: FPGA: Recv ZDACR 29401
17-03-18 01:24:24.850 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:24:24.850 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:24:24.850 -07 000000480 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:24:25.000 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:24:25.000 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:24:25.000 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:25.000 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:24:25.000 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:24:25.000 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:25.010 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:25.010 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:24:25.010 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:24:25.010 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:24:25.030 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:24:25.030 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:24:25.220 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 01:24:25.220 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:24:25.270 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:25.280 -07 000000569 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:24:25.280 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:24:25.280 -07 000000438 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:25.280 -07 000000438 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 01:24:25.280 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 01:24:26.230 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:26.230 -07 000000501 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:24:26.240 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:26.240 -07 000000438 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:26.260 -07 000000438 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:24:26.260 -07 000000438 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:24:26.260 -07 000000438 INF: Y Motor: Moved to 72.3496 after 1464 ms (table move)
17-03-18 01:24:26.270 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134589 mm (DAC = 29401)
17-03-18 01:24:26.270 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:26.270 -07 000000569 INF: FPGA: Recv ZSGSRD 30241
17-03-18 01:24:26.280 -07 000000461 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:26.280 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:26.280 -07 000000501 INF: FPGA: Recv ZSGSRD 30241
17-03-18 01:24:26.290 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:26.290 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:26.290 -07 000000569 INF: FPGA: Recv ZSGSRD 30241
17-03-18 01:24:26.300 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:26.300 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:26.300 -07 000000608 INF: FPGA: Recv ZSGSRD 30236
17-03-18 01:24:26.310 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:26.310 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:26.310 -07 000000480 INF: FPGA: Recv ZSGSRD 30240
17-03-18 01:24:26.320 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:26.320 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:26.320 -07 000000576 INF: FPGA: Recv ZSGSRD 30243
17-03-18 01:24:26.330 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:26.330 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:26.330 -07 000000608 INF: FPGA: Recv ZSGSRD 30243
17-03-18 01:24:26.340 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:26.340 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:26.340 -07 000000480 INF: FPGA: Recv ZSGSRD 30238
17-03-18 01:24:26.350 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:26.350 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:26.350 -07 000000501 INF: FPGA: Recv ZSGSRD 30237
17-03-18 01:24:26.360 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:26.360 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:26.360 -07 000000576 INF: FPGA: Recv ZSGSRD 30241
17-03-18 01:24:26.370 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:26.370 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:26.370 -07 000000501 INF: FPGA: Recv ZPIEZORD 25993
17-03-18 01:24:26.380 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:26.380 -07 000000461 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.486 V. Piezo Error = -9.3 V.
17-03-18 01:24:26.380 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30240 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30241 (-133.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30236 (-133.8 uncal um), Max = 30243 (-133.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:24:26.380 -07 000000461 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30240, posNoise = 3, negNoise = 4
17-03-18 01:24:26.380 -07 000000461 INF: Z Motor: After move to -0.134589, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:26.380 -07 000000461 INF: Z Motor: Settle wait time = 1466 ms, measure time = 110 ms (allowed 150 ms), total time = 1576 ms
17-03-18 01:24:26.380 -07 000000461 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:24:26.420 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 01:24:26.420 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:24:26.420 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:26.420 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:26.420 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:26.420 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:26.420 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:24:26.420 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:26.420 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:24:26.420 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:24:26.430 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:24:26.430 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:24:26.440 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:24:26.440 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:24:26.440 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:24:26.490 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:24:26.780 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:24:26.780 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:24:26.790 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:24:26.790 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 01:24:26.820 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:24:26.830 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:24:26.830 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:24:26.900 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:24:26.900 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:26.900 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:24:26.900 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 01:24:26.930 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:26.930 -07 000000438 INF: Autofocus start
17-03-18 01:24:26.930 -07 000000438 INF: MeasureProfile start
17-03-18 01:24:26.930 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:26.940 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:24:26.940 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:24:26.940 -07 000000438 INF: MeasureProfile done
17-03-18 01:24:26.940 -07 000000438 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:24:26.940 -07 000000438 INF: Autofocus finished
17-03-18 01:24:27.140 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:24:27.140 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 01:24:27.140 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.134591527177986. ----------
17-03-18 01:24:27.150 -07 000000610 INF: Cycle	86	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:24:27.150 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27925, sync = True, waitForSettling = True)
17-03-18 01:24:27.150 -07 000000610 INF: Z Motor: Moving to -0.127832 mm, started at -0.134592 mm, distance = 6.76 um
17-03-18 01:24:27.150 -07 000000610 INF: FPGA: Xmit ZDACW 27925\n [Z Motor]
17-03-18 01:24:27.150 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 01:24:27.160 -07 000000610 INF: FPGA: 'ZDACW 27925' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:24:27.160 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:27.160 -07 000000479 INF: FPGA: Recv ZDACR 27925
17-03-18 01:24:27.170 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:27.170 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:24:27.260 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:24:27.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:24:27.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:27.320 -07 000000576 INF: FPGA: Recv ZSGSRD 29187
17-03-18 01:24:27.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:27.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:27.330 -07 000000576 INF: FPGA: Recv ZSGSRD 29192
17-03-18 01:24:27.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:27.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:27.340 -07 000000569 INF: FPGA: Recv ZSGSRD 29189
17-03-18 01:24:27.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:27.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:27.350 -07 000000461 INF: FPGA: Recv ZSGSRD 29189
17-03-18 01:24:27.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:27.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:27.360 -07 000000608 INF: FPGA: Recv ZSGSRD 29186
17-03-18 01:24:27.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:27.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:27.380 -07 000000479 INF: FPGA: Recv ZSGSRD 29184
17-03-18 01:24:27.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:24:27.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:27.390 -07 000000438 INF: FPGA: Recv ZSGSRD 29188
17-03-18 01:24:27.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:27.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:27.400 -07 000000461 INF: FPGA: Recv ZSGSRD 29187
17-03-18 01:24:27.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:27.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:27.410 -07 000000576 INF: FPGA: Recv ZSGSRD 29188
17-03-18 01:24:27.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:27.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:27.420 -07 000000608 INF: FPGA: Recv ZSGSRD 29194
17-03-18 01:24:27.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:27.430 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:27.430 -07 000000576 INF: FPGA: Recv ZPIEZORD 24651
17-03-18 01:24:27.440 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:27.440 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.261 V. Piezo Error = -9.9 V.
17-03-18 01:24:27.440 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29188 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29188 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29184 (-127.0 uncal um), Max = 29194 (-127.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:24:27.440 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29188, posNoise = 6, negNoise = 4
17-03-18 01:24:27.440 -07 000000610 INF: Z Motor: After move to -0.127832, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:27.440 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 01:24:27.440 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:27.440 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:27.440 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:27.440 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:27.440 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:24:27.440 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:24:27.440 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:24:27.440 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:27.440 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:24:27.440 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:24:27.440 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:24:27.440 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:24:27.450 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:24:27.450 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:24:27.450 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:24:27.450 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:24:27.460 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:24:27.460 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:24:27.460 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:24:27.460 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:24:27.460 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28102 150\n [Camera]
17-03-18 01:24:27.660 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:24:27.690 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.000345,
17-03-18 01:24:28.050 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:24:28.050 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:24:28.050 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:28.050 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:28.050 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 01:24:28.050 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:24:28.050 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:24:28.050 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:28.050 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:28.050 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:24:28.240 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28102 775
17-03-18 01:24:28.390 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:24:28.450 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:24:28.450 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:24:28.450 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:28.450 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:24:28.450 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:24:28.450 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:28.450 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:28.450 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:24:28.460 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:28.460 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:24:28.580 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:24:28.580 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:24:28.580 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:28.580 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:28.580 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 01:24:28.580 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:24:28.580 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:24:28.580 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:28.580 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:28.580 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 01:24:28.770 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:24:28.770 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:24:28.770 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28102 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-18 01:24:28.770 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:24:28.770 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.127833256004854. ------
17-03-18 01:24:28.780 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13441 mm
17-03-18 01:24:28.780 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:24:28.780 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:28.780 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:28.780 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:24:28.780 -07 000000618 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 01:24:28.780 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29362, sync = True, waitForSettling = False)
17-03-18 01:24:28.780 -07 000000438 INF: Z Motor: Moving to -0.134411 mm, started at -0.127833 mm, distance = -6.58 um
17-03-18 01:24:28.790 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:24:28.790 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:28.790 -07 000000608 INF: FPGA: Recv YRDPOS 148173
17-03-18 01:24:28.800 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:24:28.800 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:24:28.800 -07 000000618 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:28.800 -07 000000618 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:24:28.800 -07 000000618 INF: Y Motor: Moving 1348 steps-27
17-03-18 01:24:28.810 -07 000000438 INF: FPGA: Xmit ZDACW 29362\n [Z Motor]
17-03-18 01:24:28.810 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:24:28.820 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:24:28.820 -07 000000438 INF: FPGA: 'ZDACW 29362' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 01:24:28.830 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:28.830 -07 000000608 INF: FPGA: Recv ZDACR 29362
17-03-18 01:24:28.840 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:24:28.840 -07 000000438 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 01:24:28.980 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:24:28.980 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:24:28.980 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:28.990 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:24:28.990 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:24:28.990 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:28.990 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:28.990 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:24:28.990 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:24:29.000 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:24:29.000 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 01:24:29.000 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:24:29.190 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 01:24:29.190 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 01:24:29.240 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:29.240 -07 000000576 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:24:29.250 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:24:29.250 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:29.250 -07 000000618 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 01:24:29.250 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.150 mm/sec
17-03-18 01:24:30.200 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:30.200 -07 000000438 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:24:30.210 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:30.210 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:30.230 -07 000000618 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:24:30.230 -07 000000618 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:24:30.230 -07 000000618 INF: Y Motor: Moved to 73.1763 after 1449 ms (table move)
17-03-18 01:24:30.240 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134411 mm (DAC = 29362)
17-03-18 01:24:30.240 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:30.240 -07 000000608 INF: FPGA: Recv ZSGSRD 30211
17-03-18 01:24:30.250 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:30.250 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:30.250 -07 000000576 INF: FPGA: Recv ZSGSRD 30210
17-03-18 01:24:30.260 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:30.260 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:30.260 -07 000000479 INF: FPGA: Recv ZSGSRD 30209
17-03-18 01:24:30.270 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:30.270 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:30.270 -07 000000438 INF: FPGA: Recv ZSGSRD 30211
17-03-18 01:24:30.280 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:30.280 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:30.280 -07 000000479 INF: FPGA: Recv ZSGSRD 30221
17-03-18 01:24:30.290 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:30.290 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:30.290 -07 000000438 INF: FPGA: Recv ZSGSRD 30216
17-03-18 01:24:30.300 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:30.300 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:30.300 -07 000000480 INF: FPGA: Recv ZSGSRD 30210
17-03-18 01:24:30.310 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:30.310 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:30.310 -07 000000438 INF: FPGA: Recv ZSGSRD 30210
17-03-18 01:24:30.320 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:30.320 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:30.320 -07 000000480 INF: FPGA: Recv ZSGSRD 30209
17-03-18 01:24:30.330 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:30.330 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:30.330 -07 000000438 INF: FPGA: Recv ZSGSRD 30215
17-03-18 01:24:30.340 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:30.340 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:30.340 -07 000000480 INF: FPGA: Recv ZPIEZORD 25987
17-03-18 01:24:30.350 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:30.350 -07 000000461 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.480 V. Piezo Error = -9.3 V.
17-03-18 01:24:30.350 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30212 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30210 (-133.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30209 (-133.6 uncal um), Max = 30221 (-133.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:24:30.350 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30212, posNoise = 9, negNoise = 3
17-03-18 01:24:30.350 -07 000000461 INF: Z Motor: After move to -0.134411, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:30.350 -07 000000461 INF: Z Motor: Settle wait time = 1452 ms, measure time = 112 ms (allowed 150 ms), total time = 1564 ms
17-03-18 01:24:30.350 -07 000000461 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 01:24:30.390 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 01:24:30.390 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:24:30.390 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:30.390 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:30.390 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:30.390 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:24:30.390 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:30.390 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:30.390 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:24:30.390 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:24:30.390 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:24:30.390 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:24:30.410 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:24:30.410 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:24:30.410 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:24:30.450 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:24:30.750 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:24:30.750 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:24:30.760 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:24:30.760 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 01:24:30.790 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:24:30.790 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 01:24:30.790 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 01:24:30.880 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 01:24:30.880 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:30.880 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:24:30.880 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 01:24:30.990 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:30.990 -07 000000461 INF: Autofocus start
17-03-18 01:24:30.990 -07 000000461 INF: MeasureProfile start
17-03-18 01:24:30.990 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:31.000 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:24:31.000 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:24:31.010 -07 000000461 INF: MeasureProfile done
17-03-18 01:24:31.010 -07 000000461 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 01:24:31.010 -07 000000461 INF: Autofocus finished
17-03-18 01:24:31.200 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:24:31.200 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:24:31.200 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134411649238017. ----------
17-03-18 01:24:31.210 -07 000000610 INF: Cycle	86	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:24:31.210 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27857, sync = True, waitForSettling = True)
17-03-18 01:24:31.210 -07 000000610 INF: Z Motor: Moving to -0.127521 mm, started at -0.134412 mm, distance = 6.89 um
17-03-18 01:24:31.210 -07 000000610 INF: FPGA: Xmit ZDACW 27857\n [Z Motor]
17-03-18 01:24:31.210 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:24:31.220 -07 000000610 INF: FPGA: 'ZDACW 27857' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:24:31.220 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:31.220 -07 000000608 INF: FPGA: Recv ZDACR 27857
17-03-18 01:24:31.230 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:31.230 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:24:31.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:31.380 -07 000000479 INF: FPGA: Recv ZSGSRD 29142
17-03-18 01:24:31.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:31.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:31.390 -07 000000591 INF: FPGA: Recv ZSGSRD 29135
17-03-18 01:24:31.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:31.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:31.400 -07 000000576 INF: FPGA: Recv ZSGSRD 29139
17-03-18 01:24:31.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:31.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:31.410 -07 000000591 INF: FPGA: Recv ZSGSRD 29144
17-03-18 01:24:31.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:31.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:31.420 -07 000000618 INF: FPGA: Recv ZSGSRD 29144
17-03-18 01:24:31.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:31.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:31.430 -07 000000461 INF: FPGA: Recv ZSGSRD 29139
17-03-18 01:24:31.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:31.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:31.440 -07 000000479 INF: FPGA: Recv ZSGSRD 29137
17-03-18 01:24:31.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:31.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:31.450 -07 000000591 INF: FPGA: Recv ZSGSRD 29145
17-03-18 01:24:31.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:31.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:31.460 -07 000000608 INF: FPGA: Recv ZSGSRD 29145
17-03-18 01:24:31.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:31.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:31.470 -07 000000576 INF: FPGA: Recv ZSGSRD 29136
17-03-18 01:24:31.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:31.480 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:31.480 -07 000000608 INF: FPGA: Recv ZPIEZORD 24560
17-03-18 01:24:31.490 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:31.490 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.251 V. Piezo Error = -10.0 V.
17-03-18 01:24:31.490 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29141 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29140 (-126.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29135 (-126.7 uncal um), Max = 29145 (-126.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:24:31.490 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29141, posNoise = 4, negNoise = 6
17-03-18 01:24:31.490 -07 000000610 INF: Z Motor: After move to -0.127521, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:31.490 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:24:31.490 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:31.490 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:31.490 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:24:31.490 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:31.490 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:31.490 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:24:31.490 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:24:31.490 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:31.490 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:24:31.490 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:24:31.490 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:24:31.490 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:24:31.490 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:24:31.490 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:24:31.490 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:24:31.500 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:24:31.510 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:24:31.510 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:24:31.510 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:24:31.510 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:24:31.510 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28034 150\n [Camera]
17-03-18 01:24:31.720 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 01:24:32.100 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:24:32.100 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:24:32.100 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:32.100 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:32.100 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 01:24:32.100 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:24:32.110 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:24:32.110 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:32.110 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:32.110 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 01:24:32.260 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:24:32.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:24:32.290 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28034 775
17-03-18 01:24:32.440 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:24:32.490 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 01:24:32.490 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 01:24:32.490 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:32.490 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:32.490 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 01:24:32.490 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:24:32.490 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:32.490 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:32.490 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:24:32.500 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:24:32.630 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:24:32.630 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:24:32.630 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:32.760 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:24:32.760 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:24:32.760 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:32.760 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:32.760 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 01:24:32.770 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:32.770 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 01:24:32.820 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:24:32.820 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:24:32.830 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28034 150' command took 2 ms to send, 1309 ms to get response, and 1315 ms overall
17-03-18 01:24:32.830 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:24:32.830 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127531318034191. ------
17-03-18 01:24:32.830 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:32.830 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13388 mm
17-03-18 01:24:32.830 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:24:32.830 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:32.830 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29247, sync = True, waitForSettling = False)
17-03-18 01:24:32.830 -07 000000591 INF: Z Motor: Moving to -0.133884 mm, started at -0.127531 mm, distance = -6.35 um
17-03-18 01:24:32.830 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:24:32.830 -07 000000576 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 01:24:32.840 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:24:32.840 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:32.840 -07 000000590 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:24:32.850 -07 000000591 INF: FPGA: Xmit ZDACW 29247\n [Z Motor]
17-03-18 01:24:32.850 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:32.850 -07 000000576 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:32.850 -07 000000576 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:24:32.850 -07 000000576 INF: Y Motor: Moving 1354 steps-33
17-03-18 01:24:32.850 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:24:32.860 -07 000000591 INF: FPGA: 'ZDACW 29247' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 01:24:32.860 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:24:32.870 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:24:32.880 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:32.880 -07 000000569 INF: FPGA: Recv ZDACR 29247
17-03-18 01:24:32.890 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:24:32.890 -07 000000591 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 01:24:33.060 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:24:33.060 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:24:33.080 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.019446,
17-03-18 01:24:33.160 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:24:33.160 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:24:33.160 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:33.160 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:24:33.160 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:24:33.160 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:33.160 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:33.170 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:33.170 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-18 01:24:33.170 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:24:33.240 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:24:33.240 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:24:33.280 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:33.280 -07 000000480 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:24:33.290 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:24:33.290 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:33.290 -07 000000576 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:24:33.290 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-18 01:24:34.240 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:34.240 -07 000000569 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:24:34.250 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:34.250 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:34.260 -07 000000576 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:24:34.270 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:24:34.270 -07 000000576 INF: Y Motor: Moved to 74.0083 after 1430 ms (table move)
17-03-18 01:24:34.270 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133884 mm (DAC = 29247)
17-03-18 01:24:34.270 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:34.270 -07 000000479 INF: FPGA: Recv ZSGSRD 30130
17-03-18 01:24:34.280 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:24:34.280 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:34.280 -07 000000591 INF: FPGA: Recv ZSGSRD 30131
17-03-18 01:24:34.290 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:34.290 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:34.290 -07 000000461 INF: FPGA: Recv ZSGSRD 30125
17-03-18 01:24:34.300 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:34.300 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:34.300 -07 000000576 INF: FPGA: Recv ZSGSRD 30133
17-03-18 01:24:34.310 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:34.310 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:34.310 -07 000000467 INF: FPGA: Recv ZSGSRD 30133
17-03-18 01:24:34.320 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:34.320 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:34.320 -07 000000569 INF: FPGA: Recv ZSGSRD 30135
17-03-18 01:24:34.330 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:34.330 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:34.330 -07 000000447 INF: FPGA: Recv ZSGSRD 30136
17-03-18 01:24:34.340 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:34.340 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:34.340 -07 000000569 INF: FPGA: Recv ZSGSRD 30128
17-03-18 01:24:34.350 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:34.350 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:34.350 -07 000000430 INF: FPGA: Recv ZSGSRD 30129
17-03-18 01:24:34.360 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:34.360 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:34.360 -07 000000590 INF: FPGA: Recv ZSGSRD 30128
17-03-18 01:24:34.370 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:34.370 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:34.370 -07 000000467 INF: FPGA: Recv ZPIEZORD 25846
17-03-18 01:24:34.380 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:34.380 -07 000000608 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.463 V. Piezo Error = -9.4 V.
17-03-18 01:24:34.380 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30131 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30130 (-133.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30125 (-133.1 uncal um), Max = 30136 (-133.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:24:34.380 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30131, posNoise = 5, negNoise = 6
17-03-18 01:24:34.380 -07 000000608 INF: Z Motor: After move to -0.133884, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:34.380 -07 000000608 INF: Z Motor: Settle wait time = 1435 ms, measure time = 106 ms (allowed 150 ms), total time = 1541 ms
17-03-18 01:24:34.380 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 01:24:34.430 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 01:24:34.430 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:24:34.430 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:34.430 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:34.430 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:34.430 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:34.430 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:24:34.430 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:34.440 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:24:34.440 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:24:34.440 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:24:34.440 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:24:34.450 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:24:34.450 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:24:34.450 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:24:34.500 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:24:34.800 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:24:34.800 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:24:34.800 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:24:34.800 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 01:24:34.840 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:24:34.840 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 01:24:34.840 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 01:24:34.920 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:24:34.920 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:34.920 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:24:34.920 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:24:34.940 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:34.940 -07 000000430 INF: Autofocus start
17-03-18 01:24:34.940 -07 000000430 INF: MeasureProfile start
17-03-18 01:24:34.940 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:34.950 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:24:34.950 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:24:34.960 -07 000000430 INF: MeasureProfile done
17-03-18 01:24:34.960 -07 000000430 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:24:34.960 -07 000000430 INF: Autofocus finished
17-03-18 01:24:35.150 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:24:35.150 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:24:35.150 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.133891288054534. ----------
17-03-18 01:24:35.150 -07 000000610 INF: Cycle	86	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:24:35.160 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27754, sync = True, waitForSettling = True)
17-03-18 01:24:35.160 -07 000000610 INF: Z Motor: Moving to -0.127050 mm, started at -0.133891 mm, distance = 6.84 um
17-03-18 01:24:35.160 -07 000000610 INF: FPGA: Xmit ZDACW 27754\n [Z Motor]
17-03-18 01:24:35.160 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:24:35.170 -07 000000610 INF: FPGA: 'ZDACW 27754' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:24:35.170 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:35.170 -07 000000447 INF: FPGA: Recv ZDACR 27754
17-03-18 01:24:35.180 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:35.180 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:24:35.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:35.330 -07 000000608 INF: FPGA: Recv ZSGSRD 29070
17-03-18 01:24:35.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:35.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:35.340 -07 000000447 INF: FPGA: Recv ZSGSRD 29070
17-03-18 01:24:35.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:35.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:35.350 -07 000000455 INF: FPGA: Recv ZSGSRD 29066
17-03-18 01:24:35.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:35.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:35.360 -07 000000430 INF: FPGA: Recv ZSGSRD 29069
17-03-18 01:24:35.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:35.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:35.370 -07 000000479 INF: FPGA: Recv ZSGSRD 29067
17-03-18 01:24:35.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:35.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:35.380 -07 000000455 INF: FPGA: Recv ZSGSRD 29070
17-03-18 01:24:35.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:35.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:35.390 -07 000000590 INF: FPGA: Recv ZSGSRD 29067
17-03-18 01:24:35.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:35.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:35.400 -07 000000467 INF: FPGA: Recv ZSGSRD 29061
17-03-18 01:24:35.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:35.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:35.410 -07 000000479 INF: FPGA: Recv ZSGSRD 29069
17-03-18 01:24:35.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:35.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:35.420 -07 000000455 INF: FPGA: Recv ZSGSRD 29068
17-03-18 01:24:35.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:35.430 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:35.430 -07 000000590 INF: FPGA: Recv ZPIEZORD 24498
17-03-18 01:24:35.440 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:35.440 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.235 V. Piezo Error = -10.0 V.
17-03-18 01:24:35.440 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.0 um, Read 10 ADC samples: Avg = 29068 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29068 (-126.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29061 (-126.2 uncal um), Max = 29070 (-126.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:24:35.440 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29068, posNoise = 2, negNoise = 7
17-03-18 01:24:35.440 -07 000000610 INF: Z Motor: After move to -0.127050, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:35.440 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:24:35.440 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:35.440 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:35.440 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:35.440 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:35.440 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:24:35.440 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:35.440 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:24:35.440 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:24:35.440 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:24:35.440 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:24:35.440 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:24:35.440 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:24:35.450 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:24:35.450 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:24:35.450 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:24:35.450 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:24:35.450 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:24:35.450 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:24:35.460 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:24:35.460 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:24:35.460 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27931 150\n [Camera]
17-03-18 01:24:35.660 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:24:36.050 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:24:36.050 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:24:36.050 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:36.060 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:24:36.060 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:36.060 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:24:36.060 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:24:36.060 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:36.060 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:36.060 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:24:36.240 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27931 775
17-03-18 01:24:36.390 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:24:36.450 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:24:36.450 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:24:36.460 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:36.460 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:36.460 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:24:36.460 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:24:36.460 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:24:36.460 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:36.460 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:24:36.470 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:24:36.580 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:24:36.580 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:24:36.580 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:36.700 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:24:36.700 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:24:36.700 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:36.710 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:36.710 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:24:36.710 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:36.710 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:24:36.770 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:24:36.770 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:24:36.770 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27931 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-18 01:24:36.780 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:24:36.780 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127062350547843. ------
17-03-18 01:24:36.780 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:36.780 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13298 mm
17-03-18 01:24:36.780 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:24:36.780 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:24:36.780 -07 000000590 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 01:24:36.780 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29049, sync = True, waitForSettling = False)
17-03-18 01:24:36.780 -07 000000467 INF: Z Motor: Moving to -0.132978 mm, started at -0.127062 mm, distance = -5.92 um
17-03-18 01:24:36.780 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:36.790 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:24:36.790 -07 000000467 INF: FPGA: Xmit ZDACW 29049\n [Z Motor]
17-03-18 01:24:36.790 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:24:36.800 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:36.800 -07 000000467 INF: FPGA: 'ZDACW 29049' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:24:36.800 -07 000000455 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:24:36.810 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:24:36.810 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:24:36.810 -07 000000590 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:36.810 -07 000000590 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:24:36.810 -07 000000590 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:24:36.820 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:36.820 -07 000000569 INF: FPGA: Recv ZDACR 29049
17-03-18 01:24:36.830 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:24:36.830 -07 000000467 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 01:24:36.830 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:24:37.010 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:24:37.010 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:24:37.100 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:24:37.110 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:24:37.110 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:37.110 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:24:37.110 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:24:37.110 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:37.110 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:24:37.110 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-18 01:24:37.110 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:24:37.120 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:24:37.200 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 01:24:37.200 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:24:37.230 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:37.230 -07 000000591 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:24:37.240 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:24:37.240 -07 000000590 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:37.240 -07 000000590 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 01:24:37.240 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.844 mm, average velocity = 2.132 mm/sec
17-03-18 01:24:37.260 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:24:37.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 85. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:24:38.190 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:38.190 -07 000000608 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:24:38.200 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:38.200 -07 000000590 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:38.210 -07 000000590 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:24:38.210 -07 000000590 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:24:38.210 -07 000000590 INF: Y Motor: Moved to 74.8320 after 1432 ms (table move)
17-03-18 01:24:38.220 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132978 mm (DAC = 29049)
17-03-18 01:24:38.220 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:38.220 -07 000000576 INF: FPGA: Recv ZSGSRD 29995
17-03-18 01:24:38.230 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:24:38.230 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:38.230 -07 000000590 INF: FPGA: Recv ZSGSRD 29988
17-03-18 01:24:38.240 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:38.240 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:38.240 -07 000000591 INF: FPGA: Recv ZSGSRD 29981
17-03-18 01:24:38.250 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:38.250 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:38.250 -07 000000461 INF: FPGA: Recv ZSGSRD 29987
17-03-18 01:24:38.260 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:38.260 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:38.260 -07 000000438 INF: FPGA: Recv ZSGSRD 29990
17-03-18 01:24:38.270 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:38.270 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:38.270 -07 000000608 INF: FPGA: Recv ZSGSRD 29997
17-03-18 01:24:38.280 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:38.280 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:38.280 -07 000000590 INF: FPGA: Recv ZSGSRD 29996
17-03-18 01:24:38.290 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:38.290 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:38.290 -07 000000461 INF: FPGA: Recv ZSGSRD 29996
17-03-18 01:24:38.300 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:38.300 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:38.300 -07 000000590 INF: FPGA: Recv ZSGSRD 29989
17-03-18 01:24:38.310 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:38.310 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:38.310 -07 000000461 INF: FPGA: Recv ZSGSRD 29988
17-03-18 01:24:38.320 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:38.320 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:38.320 -07 000000590 INF: FPGA: Recv ZPIEZORD 25688
17-03-18 01:24:38.330 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:38.330 -07 000000430 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.433 V. Piezo Error = -9.4 V.
17-03-18 01:24:38.330 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29991 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29990 (-132.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29981 (-132.1 uncal um), Max = 29997 (-132.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:24:38.330 -07 000000430 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29991, posNoise = 6, negNoise = 10
17-03-18 01:24:38.330 -07 000000430 INF: Z Motor: After move to -0.132978, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:38.330 -07 000000430 INF: Z Motor: Settle wait time = 1435 ms, measure time = 108 ms (allowed 150 ms), total time = 1543 ms
17-03-18 01:24:38.330 -07 000000430 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:24:38.380 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 01:24:38.380 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:24:38.380 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:38.380 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:38.380 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:38.380 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:38.380 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:24:38.380 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:38.390 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:24:38.390 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:24:38.390 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:24:38.390 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:24:38.400 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:24:38.400 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:24:38.400 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:24:38.440 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.018051,
17-03-18 01:24:38.450 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:24:38.750 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:24:38.750 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:24:38.750 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:24:38.750 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:24:38.790 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:24:38.790 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:24:38.790 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 01:24:38.880 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:24:38.880 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:38.880 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:24:38.880 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:24:38.890 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:24:38.890 -07 000000467 INF: Autofocus start
17-03-18 01:24:38.890 -07 000000467 INF: MeasureProfile start
17-03-18 01:24:38.890 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:24:38.900 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:24:38.900 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:24:38.900 -07 000000467 INF: MeasureProfile done
17-03-18 01:24:38.900 -07 000000467 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:24:38.900 -07 000000467 INF: Autofocus finished
17-03-18 01:24:39.100 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:24:39.100 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:24:39.100 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.132991898354688. ----------
17-03-18 01:24:39.100 -07 000000610 INF: Cycle	86	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:24:39.110 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27556, sync = True, waitForSettling = True)
17-03-18 01:24:39.110 -07 000000610 INF: Z Motor: Moving to -0.126143 mm, started at -0.132992 mm, distance = 6.85 um
17-03-18 01:24:39.110 -07 000000610 INF: FPGA: Xmit ZDACW 27556\n [Z Motor]
17-03-18 01:24:39.110 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:24:39.120 -07 000000610 INF: FPGA: 'ZDACW 27556' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:39.120 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:24:39.120 -07 000000480 INF: FPGA: Recv ZDACR 27556
17-03-18 01:24:39.130 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:39.130 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:24:39.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:39.280 -07 000000608 INF: FPGA: Recv ZSGSRD 28925
17-03-18 01:24:39.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:39.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:39.290 -07 000000430 INF: FPGA: Recv ZSGSRD 28929
17-03-18 01:24:39.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:39.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:39.300 -07 000000438 INF: FPGA: Recv ZSGSRD 28923
17-03-18 01:24:39.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:39.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:39.310 -07 000000455 INF: FPGA: Recv ZSGSRD 28928
17-03-18 01:24:39.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:39.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:39.320 -07 000000608 INF: FPGA: Recv ZSGSRD 28921
17-03-18 01:24:39.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:39.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:39.330 -07 000000430 INF: FPGA: Recv ZSGSRD 28929
17-03-18 01:24:39.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:39.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:39.340 -07 000000501 INF: FPGA: Recv ZSGSRD 28926
17-03-18 01:24:39.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:39.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:39.350 -07 000000438 INF: FPGA: Recv ZSGSRD 28922
17-03-18 01:24:39.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:39.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:39.360 -07 000000591 INF: FPGA: Recv ZSGSRD 28925
17-03-18 01:24:39.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:39.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:24:39.370 -07 000000569 INF: FPGA: Recv ZSGSRD 28927
17-03-18 01:24:39.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:39.380 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:24:39.380 -07 000000467 INF: FPGA: Recv ZPIEZORD 24325
17-03-18 01:24:39.390 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:39.390 -07 000000610 INF: Z Motor: Piezo is near 32.0 V (nominally 0 to 100 V), expect near 42.0 V, since DAC is at 4.205 V. Piezo Error = -10.1 V.
17-03-18 01:24:39.390 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.1 um, Read 10 ADC samples: Avg = 28926 (-125.4 uncal um), Error = 0.8 uncal um, Median = 28926 (-125.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 28921 (-125.3 uncal um), Max = 28929 (-125.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:24:39.390 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28926, posNoise = 3, negNoise = 5
17-03-18 01:24:39.390 -07 000000610 INF: Z Motor: After move to -0.126143, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:24:39.390 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:24:39.390 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:24:39.390 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:24:39.390 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:24:39.390 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:24:39.390 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:24:39.390 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:24:39.390 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:24:39.390 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:24:39.390 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:24:39.390 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:24:39.390 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:24:39.390 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:24:39.390 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:24:39.390 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:24:39.390 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:24:39.390 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:24:39.400 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:24:39.400 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:24:39.400 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:24:39.400 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:24:39.410 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27733 150\n [Camera]
17-03-18 01:24:39.610 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:24:40.000 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:24:40.000 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:24:40.000 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:40.000 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:24:40.000 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:24:40.000 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:40.010 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:40.010 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:24:40.010 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:40.010 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:24:40.190 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27733 775
17-03-18 01:24:40.340 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:24:40.390 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 01:24:40.390 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 01:24:40.390 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:40.390 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 01:24:40.390 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 01:24:40.390 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:40.400 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:24:40.400 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:24:40.400 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:24:40.400 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:24:40.530 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:24:40.530 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:24:40.530 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:24:40.640 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:24:40.640 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:24:40.640 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:24:40.650 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:24:40.650 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:24:40.650 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:24:40.650 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:24:40.720 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:24:40.720 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:24:40.720 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27733 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-18 01:24:41.040 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:24:41.040 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:24:41.040 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:41.040 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:41.040 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:24:41.040 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:24:41.040 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:24:41.050 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:24:41.050 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-18 01:24:41.050 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:24:41.050 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:24:41.090 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 01:24:41.090 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:24:41.130 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-18 01:24:41.140 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-18 01:24:41.140 -07 000000610 INF: Imaging Cycle 86: ScanTilesCommand Cycle 86 time end. Duration was 179305 ms.
17-03-18 01:24:41.140 -07 000000610 INF: =================== Cycle #86 ===================
17-03-18 01:24:41.140 -07 000000610 INF: ===================  ===================
17-03-18 01:24:41.140 -07 000000461 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:24:41.150 -07 000000438 INF: FPGA: Recv EXLED1ADCR 26
17-03-18 01:24:41.160 -07 000000461 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:41.160 -07 000000461 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-18 01:24:41.160 -07 000000461 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 86, FrontChillerTemperature: 4.018051, FrontChillerHeatSinkTemperature: 0.357133, AmbientTemperature: 18.74268, FlowCellCompartmentTemperature: 22.00417, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.60928, GreenLEDSensorTemperature: 26.88327, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-18 01:24:41.220 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.