17-03-18 01:24:41.280 -07 000000610 INF: =================== Cycle #87 ===================
17-03-18 01:24:41.280 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 01:24:41.280 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 01:24:41.280 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:41.280 -07 000000590 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:24:41.290 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:24:41.290 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:41.290 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 01:24:41.290 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 01:24:41.290 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 01:24:41.400 -07 000000467 INF: FPGA: Recv YMVTO 154377 872
17-03-18 01:24:41.400 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 116 ms overall
17-03-18 01:24:41.400 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-18 01:24:41.400 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-18 01:24:41.400 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.729 mm/sec
17-03-18 01:24:42.260 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:24:42.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1384, R2=1438, Total=2822. Warn if over 250 bubbles per interval.
17-03-18 01:24:43.800 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.015368,
17-03-18 01:24:44.400 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:24:44.400 -07 000000438 INF: FPGA: Recv YRDPOS 154380
17-03-18 01:24:44.410 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:24:44.410 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:24:44.430 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:24:44.430 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-18 01:24:44.430 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3150 ms
17-03-18 01:24:44.430 -07 000000610 INF: =================== Cycle #87, Flow Cell Temp 60° ===================
17-03-18 01:24:44.430 -07 000000610 INF: =================== Cycle #87, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 01:24:44.430 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 01:24:44.440 -07 000000590 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:24:44.450 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:24:44.450 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:24:44.450 -07 000000467 INF: FPGA: Recv TEC2EN 
17-03-18 01:24:44.460 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:24:44.460 -07 000000610 INF: =================== Cycle #87, Flow Cell Temp 60° ===================
17-03-18 01:24:44.460 -07 000000610 INF: =================== Cycle #87 ===================
17-03-18 01:24:44.460 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:24:44.460 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:24:44.490 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:24:44.490 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 01:24:44.490 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:24:44.790 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:24:44.810 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:24:44.810 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:24:44.860 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:24:44.880 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:24:44.880 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:24:44.980 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3) ===================
17-03-18 01:24:44.980 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:24:44.980 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:24:45.010 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:24:45.010 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:24:45.010 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:24:45.140 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:24:45.180 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:24:47.260 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-18 01:24:47.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1386, R2=1439, Total=2825. Warn if over 250 bubbles per interval.
17-03-18 01:24:48.310 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:24:48.340 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:24:48.760 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:24:48.790 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:24:49.160 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.990831,
17-03-18 01:24:49.210 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:24:49.240 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:24:49.240 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:24:49.240 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3) ===================
17-03-18 01:24:49.370 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:24:49.400 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:24:49.400 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:24:49.530 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:24:49.560 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:24:49.560 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:24:49.560 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:24:49.690 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:24:49.720 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:24:50.150 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:24:50.180 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:24:50.180 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:24:50.180 -07 000000610 INF: =================== Cycle #87 ===================
17-03-18 01:24:51.400 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 01:24:51.400 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 01:24:51.400 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:24:51.420 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:24:51.420 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 01:24:51.420 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 01:24:51.550 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:24:51.570 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 01:24:51.570 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 01:24:51.620 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:24:51.640 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:24:51.640 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:24:51.740 -07 000000610 INF: =================== Cycle #87, Pumping Reagent CMS (4) ===================
17-03-18 01:24:51.740 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:24:51.740 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:24:51.770 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:24:51.770 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:24:51.770 -07 000000610 INF: =================== Cycle #87, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 01:24:51.900 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:24:51.940 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:24:52.260 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-18 01:24:52.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:24:53.380 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:24:53.410 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:24:53.830 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:24:53.860 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:24:53.860 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:24:53.860 -07 000000610 INF: =================== Cycle #87, Pumping Reagent CMS (4) ===================
17-03-18 01:24:53.990 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:24:54.020 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:24:54.020 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:24:54.150 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:24:54.180 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:24:54.180 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:24:54.180 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:24:54.310 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:24:54.340 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:24:54.520 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.975845,
17-03-18 01:24:54.770 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:24:54.800 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:24:54.800 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:24:54.800 -07 000000610 INF: =================== Cycle #87 ===================
17-03-18 01:24:56.020 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:24:56.020 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:24:56.020 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:24:56.040 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:24:56.040 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 01:24:56.040 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 01:24:56.190 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:24:56.210 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 01:24:56.210 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 01:24:56.260 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:24:56.280 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:24:56.280 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:24:56.380 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3) ===================
17-03-18 01:24:56.380 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:24:56.380 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:24:56.410 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:24:56.410 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:24:56.410 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:24:56.540 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:24:56.580 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:24:57.260 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:24:57.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:24:57.450 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:24:57.480 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:24:57.480 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:24:57.480 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3) ===================
17-03-18 01:24:57.610 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:24:57.640 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:24:57.640 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:24:57.770 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:24:57.800 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:24:57.800 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:24:57.800 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:24:57.930 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:24:57.960 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:24:58.390 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:24:58.420 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:24:58.420 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:24:58.420 -07 000000610 INF: =================== Cycle #87 ===================
17-03-18 01:24:58.420 -07 000000591 INF: WaitCommand(10000) start
17-03-18 01:24:58.420 -07 000000479 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:24:58.420 -07 000000479 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:24:59.640 -07 000000479 INF: AsyncDelayTimer waited 1215ms
17-03-18 01:24:59.640 -07 000000479 INF: LanePump: Xmit /1?\r
17-03-18 01:24:59.670 -07 000000479 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:24:59.670 -07 000000479 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:24:59.800 -07 000000479 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:24:59.840 -07 000000479 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:24:59.880 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.996267,
17-03-18 01:25:01.370 -07 000000479 INF: LanePump: Xmit /1Q\r
17-03-18 01:25:01.400 -07 000000479 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:25:01.820 -07 000000479 INF: LanePump: Xmit /1Q\r
17-03-18 01:25:01.850 -07 000000479 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:25:01.850 -07 000000479 INF: LanePump: Waited 2011 ms for pump motion to complete
17-03-18 01:25:01.850 -07 000000479 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:25:01.850 -07 000000479 INF: ===================  ===================
17-03-18 01:25:02.260 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:25:02.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:25:05.240 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.009895,
17-03-18 01:25:07.260 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:25:07.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:25:08.430 -07 000000591 INF: WaitCommand(10000) end
17-03-18 01:25:08.430 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3) ===================
17-03-18 01:25:08.430 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 01:25:08.430 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:25:08.470 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:25:08.470 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:25:08.470 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:25:08.600 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 01:25:08.640 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:25:10.600 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.028963,
17-03-18 01:25:12.260 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:25:12.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:25:14.770 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:25:14.800 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:25:15.220 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:25:15.250 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:25:15.670 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:25:15.700 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:25:15.960 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.994908,
17-03-18 01:25:16.120 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:25:16.150 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:25:16.570 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:25:16.600 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:25:16.600 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 01:25:16.600 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3) ===================
17-03-18 01:25:16.730 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:25:16.760 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:25:16.760 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:25:16.890 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:25:16.920 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:25:16.920 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:25:16.920 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:25:17.050 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:25:17.080 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:25:17.260 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:25:17.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:25:17.510 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:25:17.540 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:25:17.540 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:25:17.540 -07 000000610 INF: =================== Cycle #87 ===================
17-03-18 01:25:18.760 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:25:18.760 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 01:25:18.760 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:25:18.780 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:25:18.780 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 01:25:18.780 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 01:25:18.990 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:25:19.010 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 01:25:19.010 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 01:25:19.060 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:25:19.080 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:25:19.080 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:25:19.180 -07 000000610 INF: =================== Cycle #87, Pumping Reagent IMT (1) ===================
17-03-18 01:25:19.180 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:25:19.180 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:25:19.210 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:25:19.210 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:25:19.210 -07 000000610 INF: =================== Cycle #87, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 01:25:19.340 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:25:19.380 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:25:20.820 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:25:20.850 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:25:21.270 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:25:21.300 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:25:21.300 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 01:25:21.300 -07 000000610 INF: =================== Cycle #87, Pumping Reagent IMT (1) ===================
17-03-18 01:25:21.320 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.994908,
17-03-18 01:25:21.430 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:25:21.460 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:25:21.460 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:25:21.590 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:25:21.620 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:25:21.620 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:25:21.620 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:25:21.750 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:25:21.780 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:25:22.210 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:25:22.240 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:25:22.240 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:25:22.240 -07 000000610 INF: =================== Cycle #87 ===================
17-03-18 01:25:22.260 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:25:22.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:25:23.460 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:25:23.460 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:25:23.460 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:25:23.480 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:25:23.480 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 01:25:23.480 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:25:23.710 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:25:23.730 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 01:25:23.730 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 01:25:23.780 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:25:23.800 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:25:23.800 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:25:23.900 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3) ===================
17-03-18 01:25:23.900 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:25:23.900 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:25:23.930 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:25:23.930 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:25:23.930 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:25:24.060 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:25:24.100 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:25:24.970 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:25:25.000 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:25:25.000 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:25:25.000 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3) ===================
17-03-18 01:25:25.130 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:25:25.160 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:25:25.160 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:25:25.290 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:25:25.320 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:25:25.320 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:25:25.320 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:25:25.450 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:25:25.480 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:25:25.910 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:25:25.940 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:25:25.940 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:25:25.940 -07 000000610 INF: =================== Cycle #87 ===================
17-03-18 01:25:25.940 -07 000000610 INF: =================== Cycle #87, Flow Cell Temp 65° ===================
17-03-18 01:25:25.940 -07 000000610 INF: =================== Cycle #87, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 01:25:26.110 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:25:26.110 -07 000000591 INF: FPGA: Recv TEC2EN 
17-03-18 01:25:26.120 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:25:26.120 -07 000000610 INF: =================== Cycle #87, Flow Cell Temp 65° ===================
17-03-18 01:25:26.120 -07 000000610 INF: =================== Cycle #87 ===================
17-03-18 01:25:26.120 -07 000000610 INF: WaitCommand(30000) start
17-03-18 01:25:26.680 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.996267,
17-03-18 01:25:27.260 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:25:27.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:25:32.040 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.993549,
17-03-18 01:25:32.260 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:25:32.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:25:37.260 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:25:37.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:25:37.400 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.004458,
17-03-18 01:25:42.260 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:25:42.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:25:42.760 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.997626,
17-03-18 01:25:47.260 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:25:47.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:25:48.120 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.009895,
17-03-18 01:25:52.260 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:25:52.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:25:53.480 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.978563,
17-03-18 01:25:56.130 -07 000000610 INF: WaitCommand(30000) end
17-03-18 01:25:56.130 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3) ===================
17-03-18 01:25:56.130 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 01:25:56.130 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:25:56.160 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:25:56.160 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:25:56.160 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:25:56.290 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 01:25:56.330 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:25:56.870 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:25:56.900 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:25:56.900 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 01:25:56.900 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3) ===================
17-03-18 01:25:57.030 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:25:57.060 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:25:57.060 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:25:57.190 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:25:57.220 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:25:57.220 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:25:57.220 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:25:57.260 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:25:57.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:25:57.350 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:25:57.380 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:25:57.810 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:25:57.840 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:25:57.840 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:25:57.840 -07 000000610 INF: =================== Cycle #87 ===================
17-03-18 01:25:57.840 -07 000000479 INF: WaitCommand(30000) start
17-03-18 01:25:57.840 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:25:57.840 -07 000000618 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:25:58.840 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.012614,
17-03-18 01:25:59.060 -07 000000618 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:25:59.060 -07 000000618 INF: LanePump: Xmit /1?\r
17-03-18 01:25:59.090 -07 000000618 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:25:59.090 -07 000000618 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:25:59.220 -07 000000618 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:25:59.260 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:26:01.600 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-18 01:26:01.630 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:26:02.050 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-18 01:26:02.080 -07 000000618 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:26:02.080 -07 000000618 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 01:26:02.080 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:26:02.080 -07 000000618 INF: ===================  ===================
17-03-18 01:26:02.260 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:26:02.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:26:04.200 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.986717,
17-03-18 01:26:07.260 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:26:07.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:26:09.560 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.996267,
17-03-18 01:26:12.260 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:26:12.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:26:14.920 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.96762,
17-03-18 01:26:17.260 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:26:17.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:26:20.280 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.001704,
17-03-18 01:26:22.260 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:26:22.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:26:25.640 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.001704,
17-03-18 01:26:27.260 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:26:27.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1388, R2=1442, Total=2830. Warn if over 250 bubbles per interval.
17-03-18 01:26:27.850 -07 000000479 INF: WaitCommand(30000) end
17-03-18 01:26:27.850 -07 000000610 INF: =================== Cycle #87, Flow Cell Temp 22° ===================
17-03-18 01:26:27.850 -07 000000610 INF: =================== Cycle #87, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 01:26:27.850 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 01:26:27.860 -07 000000591 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:26:27.860 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:26:27.860 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:26:27.860 -07 000000461 INF: FPGA: Recv TEC2EN 
17-03-18 01:26:27.870 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:26:27.870 -07 000000610 INF: =================== Cycle #87, Flow Cell Temp 22° ===================
17-03-18 01:26:27.870 -07 000000610 INF: =================== Cycle #87 ===================
17-03-18 01:26:27.870 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3) ===================
17-03-18 01:26:27.870 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:26:27.870 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:26:27.910 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:26:27.910 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:26:27.910 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:26:28.040 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:26:28.080 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:26:31.000 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.981281,
17-03-18 01:26:31.210 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:26:31.240 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:26:31.660 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:26:31.690 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:26:32.110 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:26:32.140 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:26:32.140 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:26:32.140 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3) ===================
17-03-18 01:26:32.260 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 01:26:32.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:26:32.270 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:26:32.300 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:26:32.300 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:26:32.430 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:26:32.460 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:26:32.460 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:26:32.460 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:26:32.590 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:26:32.620 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:26:33.050 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:26:33.080 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:26:33.080 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:26:33.080 -07 000000610 INF: =================== Cycle #87 ===================
17-03-18 01:26:34.300 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 01:26:34.300 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 01:26:34.300 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:26:34.320 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:26:34.320 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 01:26:34.320 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 01:26:34.470 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:26:34.490 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:26:34.490 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:26:34.540 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:26:34.560 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:26:34.560 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:26:34.660 -07 000000610 INF: =================== Cycle #87, Pumping Reagent USM (2) ===================
17-03-18 01:26:34.660 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:26:34.660 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:26:34.690 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:26:34.690 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:26:34.690 -07 000000610 INF: =================== Cycle #87, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 01:26:34.820 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:26:34.860 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:26:36.300 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:26:36.330 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:26:36.360 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.985358,
17-03-18 01:26:36.750 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:26:36.780 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:26:36.780 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:26:36.780 -07 000000610 INF: =================== Cycle #87, Pumping Reagent USM (2) ===================
17-03-18 01:26:36.910 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:26:36.940 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:26:36.940 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:26:37.070 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:26:37.100 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:26:37.100 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:26:37.100 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:26:37.230 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:26:37.260 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:26:37.260 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:26:37.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:26:37.690 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:26:37.720 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:26:37.720 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:26:37.720 -07 000000610 INF: =================== Cycle #87 ===================
17-03-18 01:26:38.940 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 01:26:38.940 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:26:38.940 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:26:38.960 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:26:38.960 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 01:26:38.960 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:26:39.110 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:26:39.130 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:26:39.130 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:26:39.180 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:26:39.200 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:26:39.200 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:26:39.300 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3) ===================
17-03-18 01:26:39.300 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:26:39.300 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:26:39.330 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:26:39.330 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:26:39.330 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:26:39.460 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:26:39.500 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:26:40.370 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:26:40.400 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:26:40.400 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:26:40.400 -07 000000610 INF: =================== Cycle #87, Pumping Reagent PR2 (3) ===================
17-03-18 01:26:40.530 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:26:40.560 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:26:40.560 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:26:40.690 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:26:40.720 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:26:40.720 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:26:40.720 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:26:40.850 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:26:40.880 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:26:41.310 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:26:41.340 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:26:41.340 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:26:41.340 -07 000000610 INF: =================== Cycle #87 ===================
17-03-18 01:26:41.340 -07 000000591 INF: WaitCommand(10000) start
17-03-18 01:26:41.340 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:26:41.340 -07 000000438 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:26:41.720 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.001704,
17-03-18 01:26:42.260 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:26:42.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:26:42.560 -07 000000438 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:26:42.560 -07 000000438 INF: LanePump: Xmit /1?\r
17-03-18 01:26:42.590 -07 000000438 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:26:42.590 -07 000000438 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:26:42.720 -07 000000438 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:26:42.760 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:26:44.290 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-18 01:26:44.320 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:26:44.740 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-18 01:26:44.770 -07 000000438 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:26:44.770 -07 000000438 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:26:44.770 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:26:44.770 -07 000000438 INF: ===================  ===================
17-03-18 01:26:47.080 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.014009,
17-03-18 01:26:47.260 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:26:47.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:26:51.350 -07 000000591 INF: WaitCommand(10000) end
17-03-18 01:26:51.350 -07 000000610 INF: =================== Cycle #87, Imaging ===================
17-03-18 01:26:51.350 -07 000000610 INF: Imaging Cycle 87: ScanTilesCommand Cycle 87 time start.
17-03-18 01:26:51.350 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 01:26:51.350 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:26:51.380 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:26:51.380 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 01:26:51.380 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 01:26:51.680 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:26:51.700 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:26:51.700 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:26:51.750 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:26:51.770 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:26:51.770 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:26:51.770 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:26:51.770 -07 000000629 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 01:26:51.770 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:26:51.770 -07 000000629 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 01:26:51.780 -07 000000591 INF: FPGA: Recv EXLED1ON 
17-03-18 01:26:51.780 -07 000000629 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:26:51.780 -07 000000629 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 01:26:51.780 -07 000000590 INF: FPGA: Recv EXLED1ADCR 23124
17-03-18 01:26:51.790 -07 000000629 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:51.790 -07 000000629 INF: RedLED: Using Red data: Photodiode ADC 23124 --> 7.4 mW (old method), or 205.0 mW (new method). Difference = 197.5 mW
17-03-18 01:26:51.790 -07 000000629 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 01:26:51.790 -07 000000455 INF: FPGA: Recv EXLED1OFF 
17-03-18 01:26:51.800 -07 000000629 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:51.800 -07 000000629 INF: RedLED: LED was on for 19 ms
17-03-18 01:26:51.800 -07 000000629 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 01:26:51.800 -07 000000629 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 01:26:51.800 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:26:51.800 -07 000000629 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 01:26:51.800 -07 000000455 INF: FPGA: Recv EXLED2ON 
17-03-18 01:26:51.810 -07 000000629 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:26:51.810 -07 000000629 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:26:51.810 -07 000000467 INF: FPGA: Recv EXLED1ADCR 2099
17-03-18 01:26:51.820 -07 000000629 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:51.820 -07 000000629 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-18 01:26:51.830 -07 000000629 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 01:26:51.830 -07 000000447 INF: FPGA: Recv EXLED2OFF 
17-03-18 01:26:51.840 -07 000000629 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:26:51.840 -07 000000629 INF: GreenLED: LED was on for 29 ms
17-03-18 01:26:51.840 -07 000000629 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 38 ms.
17-03-18 01:26:51.860 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:26:51.860 -07 000000455 INF: FPGA: Recv EMCUR 
17-03-18 01:26:51.870 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:26:51.890 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 01:26:52.260 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:26:52.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:26:52.390 -07 000000447 INF: FPGA: Recv EMOUT
17-03-18 01:26:52.390 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 492 ms to get response, and 522 ms overall
17-03-18 01:26:52.390 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 01:26:52.390 -07 000000455 INF: FPGA: Recv EMCUR 
17-03-18 01:26:52.400 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:26:52.400 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:26:52.400 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.126150112423712. ------
17-03-18 01:26:52.400 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:26:52.400 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17847 mm
17-03-18 01:26:52.400 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:26:52.400 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:26:52.400 -07 000000467 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-18 01:26:52.400 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38988, sync = True, waitForSettling = False)
17-03-18 01:26:52.400 -07 000000608 INF: Z Motor: Moving to -0.178476 mm, started at -0.126150 mm, distance = -52.33 um
17-03-18 01:26:52.400 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:26:52.410 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:26:52.410 -07 000000608 INF: FPGA: Xmit ZDACW 38988\n [Z Motor]
17-03-18 01:26:52.410 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:26:52.420 -07 000000608 INF: FPGA: 'ZDACW 38988' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:26:52.420 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:26:52.420 -07 000000438 INF: FPGA: Recv YRDPOS 154380
17-03-18 01:26:52.430 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:26:52.430 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:26:52.430 -07 000000467 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:26:52.430 -07 000000467 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 01:26:52.430 -07 000000467 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:26:52.440 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:26:52.440 -07 000000455 INF: FPGA: Recv ZDACR 38988
17-03-18 01:26:52.450 -07 000000608 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:26:52.450 -07 000000608 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 01:26:52.460 -07 000000467 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:26:52.460 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.011254,
17-03-18 01:26:52.630 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:26:52.630 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:26:54.140 -07 000000608 INF: FPGA: Recv YMVTO 122703 24776
17-03-18 01:26:54.140 -07 000000467 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1715 ms overall
17-03-18 01:26:54.140 -07 000000467 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:26:54.140 -07 000000467 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24776 steps (15.485 mm). Slippage = 0.017 mm (0.00%).
17-03-18 01:26:54.140 -07 000000467 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1715 ms, distance = 15.468 mm, average velocity = 9.019 mm/sec
17-03-18 01:26:56.990 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:26:56.990 -07 000000591 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:26:57.000 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:26:57.000 -07 000000467 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:26:57.020 -07 000000467 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:26:57.020 -07 000000467 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 01:26:57.020 -07 000000467 INF: Y Motor: Moved to 59.9106 after 4620 ms
17-03-18 01:26:57.030 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178476 mm (DAC = 38988)
17-03-18 01:26:57.030 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:57.030 -07 000000618 INF: FPGA: Recv ZSGSRD 37077
17-03-18 01:26:57.040 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:57.040 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:57.040 -07 000000467 INF: FPGA: Recv ZSGSRD 37078
17-03-18 01:26:57.050 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:57.050 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:57.050 -07 000000455 INF: FPGA: Recv ZSGSRD 37068
17-03-18 01:26:57.060 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:26:57.060 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:57.060 -07 000000629 INF: FPGA: Recv ZSGSRD 37074
17-03-18 01:26:57.070 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:57.070 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:57.070 -07 000000629 INF: FPGA: Recv ZSGSRD 37076
17-03-18 01:26:57.080 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:57.080 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:57.080 -07 000000455 INF: FPGA: Recv ZSGSRD 37079
17-03-18 01:26:57.090 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:57.090 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:57.090 -07 000000455 INF: FPGA: Recv ZSGSRD 37072
17-03-18 01:26:57.100 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:57.100 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:57.100 -07 000000629 INF: FPGA: Recv ZSGSRD 37069
17-03-18 01:26:57.110 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:57.110 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:57.110 -07 000000629 INF: FPGA: Recv ZSGSRD 37073
17-03-18 01:26:57.120 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:57.120 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:57.120 -07 000000629 INF: FPGA: Recv ZSGSRD 37078
17-03-18 01:26:57.130 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:57.130 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:26:57.130 -07 000000629 INF: FPGA: Recv ZPIEZORD 33257
17-03-18 01:26:57.140 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:57.140 -07 000000590 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.949 V. Piezo Error = -8.4 V.
17-03-18 01:26:57.140 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37074 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37075 (-177.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37068 (-177.6 uncal um), Max = 37079 (-177.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:26:57.140 -07 000000590 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37074, posNoise = 5, negNoise = 6
17-03-18 01:26:57.140 -07 000000590 INF: Z Motor: After move to -0.178476, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:26:57.140 -07 000000590 INF: Z Motor: Settle wait time = 4623 ms, measure time = 110 ms (allowed 150 ms), total time = 4733 ms
17-03-18 01:26:57.140 -07 000000590 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:26:57.180 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4775 ms
17-03-18 01:26:57.180 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:26:57.180 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:26:57.180 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:26:57.180 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:26:57.180 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:26:57.180 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:26:57.180 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:26:57.180 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:26:57.180 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:26:57.210 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 01:26:57.210 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:26:57.210 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:26:57.210 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:26:57.220 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:26:57.220 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-18 01:26:57.230 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:26:57.260 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:26:57.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:26:57.270 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:26:57.570 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:26:57.570 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:26:57.570 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:26:57.570 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 01:26:57.610 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:26:57.610 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 01:26:57.610 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 01:26:57.700 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:26:57.700 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:26:57.700 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:26:57.700 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:26:57.710 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:26:57.710 -07 000000629 INF: Image SNR check: start
17-03-18 01:26:57.710 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:26:57.720 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:26:57.720 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:26:57.720 -07 000000629 INF: Image SNR check: pass  [peak (Max-Min)=143.46]
17-03-18 01:26:57.720 -07 000000629 INF: Autofocus start
17-03-18 01:26:57.720 -07 000000629 INF: MeasureProfile start
17-03-18 01:26:57.730 -07 000000629 INF: MeasureProfile done
17-03-18 01:26:57.730 -07 000000629 INF: X=48  Z correction [um]=0.1739867
17-03-18 01:26:57.730 -07 000000629 INF: Autofocus finished
17-03-18 01:26:57.830 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.989471,
17-03-18 01:26:57.920 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:26:57.920 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:26:57.920 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.178494592954781. ----------
17-03-18 01:26:57.920 -07 000000610 INF: Cycle	87	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:26:57.930 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37538, sync = True, waitForSettling = True)
17-03-18 01:26:57.930 -07 000000610 INF: Z Motor: Moving to -0.171838 mm, started at -0.178495 mm, distance = 6.66 um
17-03-18 01:26:57.930 -07 000000610 INF: FPGA: Xmit ZDACW 37538\n [Z Motor]
17-03-18 01:26:57.930 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:26:57.940 -07 000000610 INF: FPGA: 'ZDACW 37538' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:26:57.940 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:26:57.940 -07 000000590 INF: FPGA: Recv ZDACR 37538
17-03-18 01:26:57.950 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:57.950 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:26:58.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:58.100 -07 000000608 INF: FPGA: Recv ZSGSRD 36037
17-03-18 01:26:58.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:26:58.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:58.110 -07 000000608 INF: FPGA: Recv ZSGSRD 36043
17-03-18 01:26:58.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:58.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:58.120 -07 000000608 INF: FPGA: Recv ZSGSRD 36039
17-03-18 01:26:58.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:58.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:58.130 -07 000000608 INF: FPGA: Recv ZSGSRD 36039
17-03-18 01:26:58.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:58.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:58.140 -07 000000447 INF: FPGA: Recv ZSGSRD 36041
17-03-18 01:26:58.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:58.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:58.150 -07 000000447 INF: FPGA: Recv ZSGSRD 36038
17-03-18 01:26:58.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:58.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:58.160 -07 000000447 INF: FPGA: Recv ZSGSRD 36036
17-03-18 01:26:58.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:58.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:58.170 -07 000000447 INF: FPGA: Recv ZSGSRD 36036
17-03-18 01:26:58.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:58.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:58.180 -07 000000461 INF: FPGA: Recv ZSGSRD 36040
17-03-18 01:26:58.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:58.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:26:58.190 -07 000000461 INF: FPGA: Recv ZSGSRD 36039
17-03-18 01:26:58.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:58.200 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:26:58.200 -07 000000461 INF: FPGA: Recv ZPIEZORD 31871
17-03-18 01:26:58.210 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:26:58.210 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.728 V. Piezo Error = -9.2 V.
17-03-18 01:26:58.210 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36039 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36039 (-171.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36036 (-170.9 uncal um), Max = 36043 (-171.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:26:58.210 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36039, posNoise = 4, negNoise = 3
17-03-18 01:26:58.210 -07 000000610 INF: Z Motor: After move to -0.171838, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:26:58.210 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:26:58.210 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:26:58.210 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:26:58.210 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:26:58.210 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:26:58.210 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:26:58.210 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:26:58.210 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:26:58.210 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:26:58.210 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:26:58.210 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:26:58.210 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:26:58.210 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:26:58.220 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:26:58.220 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:26:58.230 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 01:26:58.230 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:26:58.240 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 01:26:58.240 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:26:58.240 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:26:58.240 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:26:58.250 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:26:58.250 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 37 ms.
17-03-18 01:26:58.250 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37715 150\n [Camera]
17-03-18 01:26:58.450 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:26:58.840 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:26:58.840 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:26:58.850 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:26:58.850 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:26:58.850 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:26:58.850 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:26:58.980 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:26:58.980 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:26:58.980 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2617114384, 0x0, 418435064) start.
17-03-18 01:26:58.980 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-18 01:26:59.040 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37715 775
17-03-18 01:26:59.190 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:26:59.370 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:26:59.380 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:26:59.380 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:26:59.380 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2617114384, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:26:59.380 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:26:59.380 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:26:59.380 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:26:59.380 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:26:59.380 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:26:59.380 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:26:59.380 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:26:59.380 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:26:59.380 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 532 ms.
17-03-18 01:26:59.380 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:26:59.380 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:26:59.380 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:26:59.380 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:26:59.390 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 540 ms.
17-03-18 01:26:59.390 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:26:59.390 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:26:59.570 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:26:59.570 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:26:59.570 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37715 150' command took 2 ms to send, 1316 ms to get response, and 1319 ms overall
17-03-18 01:26:59.570 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:26:59.570 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.171845533388058. ------
17-03-18 01:26:59.580 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:26:59.580 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17786 mm
17-03-18 01:26:59.580 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:26:59.580 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:26:59.580 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:26:59.580 -07 000000590 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 01:26:59.580 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38854, sync = True, waitForSettling = False)
17-03-18 01:26:59.580 -07 000000502 INF: Z Motor: Moving to -0.177862 mm, started at -0.171846 mm, distance = -6.02 um
17-03-18 01:26:59.590 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:26:59.590 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:26:59.590 -07 000000447 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:26:59.600 -07 000000502 INF: FPGA: Xmit ZDACW 38854\n [Z Motor]
17-03-18 01:26:59.600 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:26:59.600 -07 000000590 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:26:59.600 -07 000000590 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:26:59.600 -07 000000590 INF: Y Motor: Moving 1331 steps2
17-03-18 01:26:59.600 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:26:59.610 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:26:59.610 -07 000000502 INF: FPGA: 'ZDACW 38854' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 01:26:59.620 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:26:59.630 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:26:59.630 -07 000000461 INF: FPGA: Recv ZDACR 38854
17-03-18 01:26:59.640 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:26:59.640 -07 000000502 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 01:26:59.790 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:26:59.790 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:26:59.790 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:26:59.790 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:26:59.790 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:26:59.790 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:26:59.790 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:26:59.790 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:26:59.800 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:26:59.800 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 423 ms.
17-03-18 01:26:59.810 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:26:59.810 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:26:59.990 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 01:26:59.990 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:27:00.030 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:00.030 -07 000000502 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:27:00.040 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:00.040 -07 000000590 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:00.040 -07 000000590 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:27:00.040 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-18 01:27:00.990 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:00.990 -07 000000591 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:27:01.000 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:01.000 -07 000000590 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:01.020 -07 000000590 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:27:01.020 -07 000000590 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:27:01.020 -07 000000590 INF: Y Motor: Moved to 60.7329 after 1440 ms (table move)
17-03-18 01:27:01.030 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177862 mm (DAC = 38854)
17-03-18 01:27:01.030 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:01.030 -07 000000487 INF: FPGA: Recv ZSGSRD 36982
17-03-18 01:27:01.040 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:27:01.040 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:01.040 -07 000000618 INF: FPGA: Recv ZSGSRD 36979
17-03-18 01:27:01.050 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:01.050 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:01.050 -07 000000474 INF: FPGA: Recv ZSGSRD 36975
17-03-18 01:27:01.060 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:01.060 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:01.060 -07 000000625 INF: FPGA: Recv ZSGSRD 36971
17-03-18 01:27:01.070 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:01.070 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:01.070 -07 000000467 INF: FPGA: Recv ZSGSRD 36965
17-03-18 01:27:01.080 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:01.080 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:01.080 -07 000000502 INF: FPGA: Recv ZSGSRD 36982
17-03-18 01:27:01.090 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:01.090 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:01.090 -07 000000474 INF: FPGA: Recv ZSGSRD 36980
17-03-18 01:27:01.100 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:01.100 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:01.100 -07 000000591 INF: FPGA: Recv ZSGSRD 36974
17-03-18 01:27:01.110 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:01.110 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:01.110 -07 000000424 INF: FPGA: Recv ZSGSRD 36981
17-03-18 01:27:01.120 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:01.120 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:01.120 -07 000000447 INF: FPGA: Recv ZSGSRD 36982
17-03-18 01:27:01.130 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:01.130 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:01.130 -07 000000474 INF: FPGA: Recv ZPIEZORD 33145
17-03-18 01:27:01.140 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:01.140 -07 000000479 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.5 V.
17-03-18 01:27:01.140 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36977 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36980 (-177.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36965 (-176.9 uncal um), Max = 36982 (-177.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 01:27:01.140 -07 000000479 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36977, posNoise = 5, negNoise = 12
17-03-18 01:27:01.140 -07 000000479 INF: Z Motor: After move to -0.177862, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:01.140 -07 000000479 INF: Z Motor: Settle wait time = 1443 ms, measure time = 109 ms (allowed 150 ms), total time = 1552 ms
17-03-18 01:27:01.140 -07 000000479 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:27:01.190 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 01:27:01.190 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:27:01.190 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:01.190 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:01.190 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:01.190 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:01.190 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:27:01.190 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:01.190 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:01.190 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:27:01.200 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:01.200 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:27:01.210 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:27:01.210 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:27:01.210 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:27:01.260 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:27:01.560 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:27:01.560 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:27:01.560 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:27:01.560 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 01:27:01.600 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:27:01.600 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 01:27:01.600 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:27:01.690 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:27:01.690 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:01.690 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:27:01.690 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:27:01.700 -07 000000447 INF: Autofocus start
17-03-18 01:27:01.700 -07 000000447 INF: MeasureProfile start
17-03-18 01:27:01.700 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:01.700 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:01.710 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:27:01.710 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:27:01.710 -07 000000447 INF: MeasureProfile done
17-03-18 01:27:01.710 -07 000000447 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:27:01.710 -07 000000447 INF: Autofocus finished
17-03-18 01:27:01.910 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:27:01.910 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:27:01.910 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.17787144437703. ----------
17-03-18 01:27:01.910 -07 000000610 INF: Cycle	87	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:27:01.920 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37369, sync = True, waitForSettling = True)
17-03-18 01:27:01.920 -07 000000610 INF: Z Motor: Moving to -0.171064 mm, started at -0.177871 mm, distance = 6.81 um
17-03-18 01:27:01.920 -07 000000610 INF: FPGA: Xmit ZDACW 37369\n [Z Motor]
17-03-18 01:27:01.920 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:27:01.930 -07 000000610 INF: FPGA: 'ZDACW 37369' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:27:01.930 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:01.930 -07 000000608 INF: FPGA: Recv ZDACR 37369
17-03-18 01:27:01.940 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:01.940 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:27:02.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:02.090 -07 000000487 INF: FPGA: Recv ZSGSRD 35915
17-03-18 01:27:02.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:02.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:02.100 -07 000000629 INF: FPGA: Recv ZSGSRD 35917
17-03-18 01:27:02.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:02.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:02.110 -07 000000502 INF: FPGA: Recv ZSGSRD 35911
17-03-18 01:27:02.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:02.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:02.120 -07 000000455 INF: FPGA: Recv ZSGSRD 35915
17-03-18 01:27:02.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:02.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:02.130 -07 000000447 INF: FPGA: Recv ZSGSRD 35919
17-03-18 01:27:02.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:02.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:02.140 -07 000000461 INF: FPGA: Recv ZSGSRD 35916
17-03-18 01:27:02.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:02.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:02.150 -07 000000479 INF: FPGA: Recv ZSGSRD 35915
17-03-18 01:27:02.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:02.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:02.160 -07 000000424 INF: FPGA: Recv ZSGSRD 35916
17-03-18 01:27:02.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:02.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:02.170 -07 000000591 INF: FPGA: Recv ZSGSRD 35920
17-03-18 01:27:02.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:02.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:02.180 -07 000000629 INF: FPGA: Recv ZSGSRD 35920
17-03-18 01:27:02.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:02.190 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:02.190 -07 000000502 INF: FPGA: Recv ZPIEZORD 31717
17-03-18 01:27:02.200 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:02.200 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.3 V.
17-03-18 01:27:02.200 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35916 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35916 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35911 (-170.1 uncal um), Max = 35920 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:27:02.200 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35916, posNoise = 4, negNoise = 5
17-03-18 01:27:02.200 -07 000000610 INF: Z Motor: After move to -0.171064, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:02.200 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:27:02.200 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:02.200 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:02.200 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:02.200 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:02.200 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:27:02.200 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:02.200 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:27:02.200 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:27:02.200 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:02.200 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:27:02.200 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:27:02.200 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:27:02.210 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:27:02.210 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:27:02.210 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:27:02.210 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:27:02.220 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:27:02.220 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:27:02.220 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:27:02.220 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:27:02.230 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37545 150\n [Camera]
17-03-18 01:27:02.270 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:27:02.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:27:02.430 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:27:02.820 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:27:02.820 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:27:02.820 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:02.820 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:02.820 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:27:02.820 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:27:02.820 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:27:02.820 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:02.820 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:02.820 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 01:27:03.010 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37545 775
17-03-18 01:27:03.160 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:27:03.190 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.000345,
17-03-18 01:27:03.220 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:27:03.220 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:27:03.220 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:03.220 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:27:03.220 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:03.220 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:27:03.220 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:27:03.220 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:03.230 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:03.230 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:27:03.350 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:27:03.350 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:27:03.350 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:03.460 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:27:03.460 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:27:03.460 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:03.470 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:03.470 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2569222360, 0x0, 418435064) start.
17-03-18 01:27:03.470 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:03.470 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:27:03.540 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:27:03.540 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:27:03.540 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37545 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-18 01:27:03.540 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:27:03.540 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.171055355294621. ------
17-03-18 01:27:03.550 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:03.550 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17771 mm
17-03-18 01:27:03.550 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:27:03.550 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:27:03.550 -07 000000447 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 01:27:03.550 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:03.550 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38821, sync = True, waitForSettling = False)
17-03-18 01:27:03.550 -07 000000438 INF: Z Motor: Moving to -0.177711 mm, started at -0.171055 mm, distance = -6.66 um
17-03-18 01:27:03.560 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:03.560 -07 000000438 INF: FPGA: Xmit ZDACW 38821\n [Z Motor]
17-03-18 01:27:03.560 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:27:03.570 -07 000000438 INF: FPGA: 'ZDACW 38821' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:27:03.570 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:03.570 -07 000000474 INF: FPGA: Recv YRDPOS 124382
17-03-18 01:27:03.580 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:27:03.580 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:27:03.580 -07 000000447 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:03.580 -07 000000447 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:27:03.580 -07 000000447 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:27:03.590 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:03.590 -07 000000461 INF: FPGA: Recv ZDACR 38821
17-03-18 01:27:03.600 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:27:03.600 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:27:03.600 -07 000000438 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 01:27:03.780 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:27:03.780 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:27:03.870 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2569222360, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:27:03.870 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:27:03.870 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:03.870 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:27:03.870 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:27:03.870 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:03.870 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:03.870 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:03.870 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 01:27:03.880 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:27:03.970 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:27:03.970 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 01:27:04.020 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:04.020 -07 000000467 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:27:04.030 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:04.030 -07 000000447 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:04.030 -07 000000447 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:27:04.030 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.840 mm, average velocity = 2.148 mm/sec
17-03-18 01:27:04.980 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:04.980 -07 000000608 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:27:04.990 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:04.990 -07 000000447 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:05.010 -07 000000447 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:27:05.010 -07 000000447 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:27:05.010 -07 000000447 INF: Y Motor: Moved to 61.5635 after 1464 ms (table move)
17-03-18 01:27:05.020 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177711 mm (DAC = 38821)
17-03-18 01:27:05.020 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:05.020 -07 000000424 INF: FPGA: Recv ZSGSRD 36956
17-03-18 01:27:05.030 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:27:05.030 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:05.030 -07 000000479 INF: FPGA: Recv ZSGSRD 36950
17-03-18 01:27:05.040 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:05.040 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:05.040 -07 000000474 INF: FPGA: Recv ZSGSRD 36956
17-03-18 01:27:05.050 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:05.050 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:05.050 -07 000000608 INF: FPGA: Recv ZSGSRD 36956
17-03-18 01:27:05.060 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:05.060 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:05.060 -07 000000467 INF: FPGA: Recv ZSGSRD 36959
17-03-18 01:27:05.070 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:05.070 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:05.070 -07 000000424 INF: FPGA: Recv ZSGSRD 36944
17-03-18 01:27:05.080 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:05.080 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:05.080 -07 000000455 INF: FPGA: Recv ZSGSRD 36950
17-03-18 01:27:05.090 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:05.090 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:05.090 -07 000000461 INF: FPGA: Recv ZSGSRD 36948
17-03-18 01:27:05.100 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:05.100 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:05.100 -07 000000474 INF: FPGA: Recv ZSGSRD 36946
17-03-18 01:27:05.110 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:05.110 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:05.110 -07 000000629 INF: FPGA: Recv ZSGSRD 36956
17-03-18 01:27:05.120 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:05.120 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:05.120 -07 000000487 INF: FPGA: Recv ZPIEZORD 33117
17-03-18 01:27:05.130 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:05.130 -07 000000618 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.924 V. Piezo Error = -8.5 V.
17-03-18 01:27:05.130 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36952 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36953 (-176.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36944 (-176.8 uncal um), Max = 36959 (-176.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:27:05.130 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36952, posNoise = 7, negNoise = 8
17-03-18 01:27:05.130 -07 000000618 INF: Z Motor: After move to -0.177711, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:05.130 -07 000000618 INF: Z Motor: Settle wait time = 1465 ms, measure time = 109 ms (allowed 150 ms), total time = 1574 ms
17-03-18 01:27:05.130 -07 000000618 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:27:05.180 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 01:27:05.180 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:27:05.180 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:05.180 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:05.180 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:05.180 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:27:05.180 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:05.180 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:05.180 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:05.180 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:27:05.190 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:05.190 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:27:05.190 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:27:05.190 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:27:05.200 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:27:05.240 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:27:05.540 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:27:05.540 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:27:05.540 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:27:05.540 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2621650816, 0x0, 559484976) start.
17-03-18 01:27:05.580 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:27:05.580 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 01:27:05.580 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:27:05.660 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2621650816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:27:05.660 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:05.660 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:27:05.660 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:27:05.680 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:05.680 -07 000000424 INF: Autofocus start
17-03-18 01:27:05.680 -07 000000424 INF: MeasureProfile start
17-03-18 01:27:05.680 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:05.690 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:27:05.690 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:27:05.690 -07 000000424 INF: MeasureProfile done
17-03-18 01:27:05.690 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:27:05.690 -07 000000424 INF: Autofocus finished
17-03-18 01:27:05.890 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:27:05.890 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:27:05.890 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.177710839073486. ----------
17-03-18 01:27:05.890 -07 000000610 INF: Cycle	87	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:27:05.900 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37336, sync = True, waitForSettling = True)
17-03-18 01:27:05.900 -07 000000610 INF: Z Motor: Moving to -0.170913 mm, started at -0.177711 mm, distance = 6.80 um
17-03-18 01:27:05.900 -07 000000610 INF: FPGA: Xmit ZDACW 37336\n [Z Motor]
17-03-18 01:27:05.900 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:27:05.910 -07 000000610 INF: FPGA: 'ZDACW 37336' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:05.910 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:05.910 -07 000000608 INF: FPGA: Recv ZDACR 37336
17-03-18 01:27:05.920 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:05.920 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:27:06.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:06.070 -07 000000608 INF: FPGA: Recv ZSGSRD 35895
17-03-18 01:27:06.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:06.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:06.080 -07 000000625 INF: FPGA: Recv ZSGSRD 35897
17-03-18 01:27:06.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:06.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:06.090 -07 000000625 INF: FPGA: Recv ZSGSRD 35899
17-03-18 01:27:06.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:06.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:06.100 -07 000000629 INF: FPGA: Recv ZSGSRD 35888
17-03-18 01:27:06.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:06.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:06.110 -07 000000461 INF: FPGA: Recv ZSGSRD 35894
17-03-18 01:27:06.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:06.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:06.120 -07 000000455 INF: FPGA: Recv ZSGSRD 35896
17-03-18 01:27:06.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:06.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:06.130 -07 000000502 INF: FPGA: Recv ZSGSRD 35896
17-03-18 01:27:06.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:06.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:06.140 -07 000000629 INF: FPGA: Recv ZSGSRD 35898
17-03-18 01:27:06.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:06.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:06.150 -07 000000438 INF: FPGA: Recv ZSGSRD 35893
17-03-18 01:27:06.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:06.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:06.160 -07 000000608 INF: FPGA: Recv ZSGSRD 35896
17-03-18 01:27:06.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:06.170 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:06.170 -07 000000625 INF: FPGA: Recv ZPIEZORD 31668
17-03-18 01:27:06.180 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:06.180 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.697 V. Piezo Error = -9.3 V.
17-03-18 01:27:06.180 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35895 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35896 (-170.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35888 (-170.0 uncal um), Max = 35899 (-170.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:27:06.180 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35895, posNoise = 4, negNoise = 7
17-03-18 01:27:06.180 -07 000000610 INF: Z Motor: After move to -0.170913, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:06.180 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:27:06.180 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:06.180 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:06.180 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:06.180 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:06.180 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:27:06.180 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:06.180 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:27:06.180 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:27:06.180 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:06.180 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:27:06.180 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:27:06.180 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:27:06.190 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:27:06.190 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:27:06.190 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:27:06.190 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:27:06.200 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:27:06.200 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:27:06.200 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:27:06.200 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:27:06.210 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37513 150\n [Camera]
17-03-18 01:27:06.410 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:27:06.800 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:27:06.800 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:27:06.800 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:06.800 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:06.800 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:27:06.800 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:27:06.800 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:27:06.800 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:06.910 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:06.910 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:27:06.990 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37513 775
17-03-18 01:27:07.140 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:27:07.190 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:27:07.190 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:27:07.190 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:07.190 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:07.190 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:27:07.260 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:27:07.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:27:07.300 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:27:07.310 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:27:07.310 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:07.310 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:07.310 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 01:27:07.330 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:27:07.330 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:27:07.330 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:07.330 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:27:07.330 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:27:07.330 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:07.330 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:07.340 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:27:07.340 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:07.340 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:27:07.520 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:27:07.520 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:27:07.520 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37513 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:27:07.520 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:27:07.520 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.170920446839645. ------
17-03-18 01:27:07.520 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:07.520 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17718 mm
17-03-18 01:27:07.520 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:27:07.530 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:07.530 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:27:07.530 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:27:07.530 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:27:07.530 -07 000000447 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-18 01:27:07.530 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38704, sync = True, waitForSettling = False)
17-03-18 01:27:07.530 -07 000000479 INF: Z Motor: Moving to -0.177176 mm, started at -0.170920 mm, distance = -6.26 um
17-03-18 01:27:07.540 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:07.540 -07 000000625 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:27:07.550 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:27:07.550 -07 000000447 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:07.550 -07 000000479 INF: FPGA: Xmit ZDACW 38704\n [Z Motor]
17-03-18 01:27:07.550 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:27:07.550 -07 000000447 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:27:07.550 -07 000000447 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:27:07.560 -07 000000479 INF: FPGA: 'ZDACW 38704' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:27:07.560 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:27:07.570 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:07.570 -07 000000625 INF: FPGA: Recv ZDACR 38704
17-03-18 01:27:07.580 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:27:07.580 -07 000000479 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 01:27:07.730 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:27:07.730 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:27:07.730 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:27:07.730 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:27:07.730 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:07.740 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:27:07.740 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:27:07.740 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:07.740 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:07.740 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:27:07.740 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:07.750 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:27:07.930 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:27:07.930 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 01:27:07.980 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:07.980 -07 000000487 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:27:07.990 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:27:07.990 -07 000000447 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:07.990 -07 000000447 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:27:07.990 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.839 mm, average velocity = 2.191 mm/sec
17-03-18 01:27:08.550 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.973092,
17-03-18 01:27:08.940 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:08.940 -07 000000618 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:27:08.950 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:08.950 -07 000000447 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:08.970 -07 000000447 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:27:08.970 -07 000000447 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:27:08.970 -07 000000447 INF: Y Motor: Moved to 62.3955 after 1440 ms (table move)
17-03-18 01:27:08.970 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177176 mm (DAC = 38704)
17-03-18 01:27:08.970 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:08.980 -07 000000474 INF: FPGA: Recv ZSGSRD 36872
17-03-18 01:27:08.980 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:27:08.980 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:08.980 -07 000000461 INF: FPGA: Recv ZSGSRD 36869
17-03-18 01:27:08.990 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:08.990 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:08.990 -07 000000625 INF: FPGA: Recv ZSGSRD 36872
17-03-18 01:27:09.000 -07 000000590 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:09.000 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:09.000 -07 000000455 INF: FPGA: Recv ZSGSRD 36873
17-03-18 01:27:09.010 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:09.010 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:09.010 -07 000000502 INF: FPGA: Recv ZSGSRD 36865
17-03-18 01:27:09.020 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:09.020 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:09.020 -07 000000591 INF: FPGA: Recv ZSGSRD 36869
17-03-18 01:27:09.030 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:09.030 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:09.030 -07 000000625 INF: FPGA: Recv ZSGSRD 36869
17-03-18 01:27:09.040 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:09.040 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:09.040 -07 000000629 INF: FPGA: Recv ZSGSRD 36871
17-03-18 01:27:09.050 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:09.050 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:09.050 -07 000000502 INF: FPGA: Recv ZSGSRD 36866
17-03-18 01:27:09.060 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:09.060 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:09.060 -07 000000461 INF: FPGA: Recv ZSGSRD 36863
17-03-18 01:27:09.070 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:09.070 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:09.070 -07 000000479 INF: FPGA: Recv ZPIEZORD 33018
17-03-18 01:27:09.080 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:09.080 -07 000000590 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.906 V. Piezo Error = -8.5 V.
17-03-18 01:27:09.080 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36869 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36869 (-176.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36863 (-176.2 uncal um), Max = 36873 (-176.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:27:09.080 -07 000000590 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36869, posNoise = 4, negNoise = 6
17-03-18 01:27:09.080 -07 000000590 INF: Z Motor: After move to -0.177176, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:09.080 -07 000000590 INF: Z Motor: Settle wait time = 1443 ms, measure time = 101 ms (allowed 150 ms), total time = 1544 ms
17-03-18 01:27:09.080 -07 000000590 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:27:09.130 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 01:27:09.130 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:27:09.130 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:09.130 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:09.130 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:09.130 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:09.130 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:27:09.130 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:09.130 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:09.130 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:27:09.140 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:09.140 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:27:09.150 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:27:09.150 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:27:09.150 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:27:09.190 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:27:09.490 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:27:09.490 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:27:09.490 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:27:09.500 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2621650816, 0x0, 559484976) start.
17-03-18 01:27:09.530 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:27:09.530 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 01:27:09.530 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:27:09.610 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2621650816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:27:09.610 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:09.610 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:27:09.610 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:27:09.630 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:09.630 -07 000000591 INF: Autofocus start
17-03-18 01:27:09.630 -07 000000591 INF: MeasureProfile start
17-03-18 01:27:09.630 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:09.640 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:27:09.640 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:27:09.650 -07 000000591 INF: MeasureProfile done
17-03-18 01:27:09.650 -07 000000591 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:27:09.650 -07 000000591 INF: Autofocus finished
17-03-18 01:27:09.840 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:27:09.840 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:27:09.840 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.17717762946572. ----------
17-03-18 01:27:09.850 -07 000000610 INF: Cycle	87	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:27:09.850 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37219, sync = True, waitForSettling = True)
17-03-18 01:27:09.850 -07 000000610 INF: Z Motor: Moving to -0.170378 mm, started at -0.177178 mm, distance = 6.80 um
17-03-18 01:27:09.850 -07 000000610 INF: FPGA: Xmit ZDACW 37219\n [Z Motor]
17-03-18 01:27:09.850 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:27:09.860 -07 000000610 INF: FPGA: 'ZDACW 37219' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:27:09.860 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:09.860 -07 000000447 INF: FPGA: Recv ZDACR 37219
17-03-18 01:27:09.870 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:09.870 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:27:10.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:10.020 -07 000000487 INF: FPGA: Recv ZSGSRD 35812
17-03-18 01:27:10.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:10.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:10.030 -07 000000590 INF: FPGA: Recv ZSGSRD 35808
17-03-18 01:27:10.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:10.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:10.040 -07 000000629 INF: FPGA: Recv ZSGSRD 35815
17-03-18 01:27:10.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:10.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:10.050 -07 000000502 INF: FPGA: Recv ZSGSRD 35807
17-03-18 01:27:10.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:10.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:10.060 -07 000000618 INF: FPGA: Recv ZSGSRD 35811
17-03-18 01:27:10.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:10.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:10.070 -07 000000424 INF: FPGA: Recv ZSGSRD 35814
17-03-18 01:27:10.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:10.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:10.080 -07 000000455 INF: FPGA: Recv ZSGSRD 35808
17-03-18 01:27:10.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:10.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:10.090 -07 000000479 INF: FPGA: Recv ZSGSRD 35819
17-03-18 01:27:10.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:10.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:10.100 -07 000000591 INF: FPGA: Recv ZSGSRD 35812
17-03-18 01:27:10.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:10.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:10.110 -07 000000590 INF: FPGA: Recv ZSGSRD 35812
17-03-18 01:27:10.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:10.120 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:10.120 -07 000000625 INF: FPGA: Recv ZPIEZORD 31624
17-03-18 01:27:10.130 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:10.130 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.679 V. Piezo Error = -9.2 V.
17-03-18 01:27:10.130 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35812 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35812 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35807 (-169.5 uncal um), Max = 35819 (-169.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:27:10.130 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35812, posNoise = 7, negNoise = 5
17-03-18 01:27:10.130 -07 000000610 INF: Z Motor: After move to -0.170378, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:10.130 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:27:10.130 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:10.130 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:10.130 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:10.130 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:27:10.130 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:10.130 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:10.130 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:27:10.130 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:27:10.130 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:10.130 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:27:10.130 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:27:10.130 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:27:10.140 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:27:10.140 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:27:10.140 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:27:10.140 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:27:10.150 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:27:10.150 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:27:10.150 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:27:10.150 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:27:10.150 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37396 150\n [Camera]
17-03-18 01:27:10.350 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:27:10.740 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:27:10.740 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:27:10.740 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:10.740 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:10.740 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:27:10.740 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:27:10.740 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:27:10.740 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:10.740 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:10.740 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 01:27:10.930 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37396 775
17-03-18 01:27:11.080 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:27:11.130 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 01:27:11.130 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:27:11.130 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:11.130 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:27:11.130 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:27:11.130 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:11.140 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:11.140 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:11.140 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:27:11.140 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:27:11.270 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:27:11.270 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:27:11.270 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:11.270 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:11.270 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:27:11.270 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:27:11.270 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:27:11.280 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:11.280 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:11.280 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 01:27:11.460 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 01:27:11.460 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:27:11.470 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37396 150' command took 2 ms to send, 1309 ms to get response, and 1316 ms overall
17-03-18 01:27:11.470 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:27:11.470 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.170387237231878. ------
17-03-18 01:27:11.470 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:11.470 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17698 mm
17-03-18 01:27:11.470 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:27:11.470 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:27:11.470 -07 000000487 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 01:27:11.470 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38661, sync = True, waitForSettling = False)
17-03-18 01:27:11.480 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:11.480 -07 000000467 INF: Z Motor: Moving to -0.176979 mm, started at -0.170387 mm, distance = -6.59 um
17-03-18 01:27:11.480 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:27:11.480 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:11.480 -07 000000461 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:27:11.490 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:27:11.490 -07 000000487 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:27:11.490 -07 000000487 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:11.490 -07 000000487 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:27:11.490 -07 000000487 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:27:11.500 -07 000000467 INF: FPGA: Xmit ZDACW 38661\n [Z Motor]
17-03-18 01:27:11.500 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:27:11.510 -07 000000467 INF: FPGA: 'ZDACW 38661' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:27:11.510 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:27:11.520 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:11.520 -07 000000591 INF: FPGA: Recv ZDACR 38661
17-03-18 01:27:11.530 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:27:11.530 -07 000000467 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 01:27:11.680 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:27:11.680 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:27:11.680 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:11.680 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:27:11.680 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:27:11.680 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:11.680 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:11.680 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:27:11.680 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 01:27:11.690 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:27:11.690 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 01:27:11.690 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:27:11.880 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:27:11.880 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:27:11.930 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:11.930 -07 000000424 INF: FPGA: Recv YRDPOS 129482
17-03-18 01:27:11.940 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:11.940 -07 000000487 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:11.940 -07 000000487 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:27:11.940 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-18 01:27:12.260 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:27:12.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:27:12.890 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:12.890 -07 000000447 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:27:12.900 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:12.900 -07 000000487 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:12.920 -07 000000487 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:27:12.920 -07 000000487 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:27:12.920 -07 000000487 INF: Y Motor: Moved to 63.2241 after 1449 ms (table move)
17-03-18 01:27:12.930 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176979 mm (DAC = 38661)
17-03-18 01:27:12.930 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:12.930 -07 000000461 INF: FPGA: Recv ZSGSRD 36834
17-03-18 01:27:12.940 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:12.940 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:12.940 -07 000000590 INF: FPGA: Recv ZSGSRD 36836
17-03-18 01:27:12.950 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:12.950 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:12.950 -07 000000474 INF: FPGA: Recv ZSGSRD 36842
17-03-18 01:27:12.960 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:12.960 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:12.960 -07 000000438 INF: FPGA: Recv ZSGSRD 36844
17-03-18 01:27:12.970 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:12.970 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:12.970 -07 000000461 INF: FPGA: Recv ZSGSRD 36840
17-03-18 01:27:12.980 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:12.990 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:12.990 -07 000000590 INF: FPGA: Recv ZSGSRD 36837
17-03-18 01:27:13.000 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:27:13.000 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:13.000 -07 000000461 INF: FPGA: Recv ZSGSRD 36832
17-03-18 01:27:13.010 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:13.010 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:13.010 -07 000000629 INF: FPGA: Recv ZSGSRD 36836
17-03-18 01:27:13.020 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:13.020 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:13.020 -07 000000618 INF: FPGA: Recv ZSGSRD 36834
17-03-18 01:27:13.030 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:13.030 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:13.030 -07 000000455 INF: FPGA: Recv ZSGSRD 36845
17-03-18 01:27:13.040 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:13.040 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:13.040 -07 000000461 INF: FPGA: Recv ZPIEZORD 32992
17-03-18 01:27:13.050 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:13.050 -07 000000608 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -8.5 V.
17-03-18 01:27:13.050 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36838 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36836 (-176.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36832 (-176.0 uncal um), Max = 36845 (-176.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:27:13.050 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36838, posNoise = 7, negNoise = 6
17-03-18 01:27:13.050 -07 000000608 INF: Z Motor: After move to -0.176979, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:13.050 -07 000000608 INF: Z Motor: Settle wait time = 1449 ms, measure time = 121 ms (allowed 150 ms), total time = 1570 ms
17-03-18 01:27:13.050 -07 000000608 INF: Z Motor: Waiting extra 29 ms after reading position to reach expected total of 150 ms
17-03-18 01:27:13.080 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 01:27:13.080 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:27:13.080 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:13.080 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:13.080 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:13.080 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:27:13.080 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:13.080 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:13.080 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:13.080 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:27:13.090 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:13.090 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:27:13.090 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:27:13.090 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:27:13.100 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:27:13.140 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:27:13.440 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:27:13.440 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:27:13.440 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:27:13.440 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2640732200, 0x0, 559484976) start.
17-03-18 01:27:13.480 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:27:13.480 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 01:27:13.480 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 01:27:13.560 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2640732200, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:27:13.560 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:13.560 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:27:13.560 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:27:13.580 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:13.580 -07 000000487 INF: Autofocus start
17-03-18 01:27:13.580 -07 000000487 INF: MeasureProfile start
17-03-18 01:27:13.580 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:13.590 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:27:13.590 -07 000000487 INF: MeasureProfile done
17-03-18 01:27:13.590 -07 000000487 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:27:13.590 -07 000000487 INF: Autofocus finished
17-03-18 01:27:13.600 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:27:13.800 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:27:13.800 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 01:27:13.800 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.176978478889325. ----------
17-03-18 01:27:13.800 -07 000000610 INF: Cycle	87	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:27:13.810 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37141, sync = True, waitForSettling = True)
17-03-18 01:27:13.810 -07 000000610 INF: Z Motor: Moving to -0.170021 mm, started at -0.176978 mm, distance = 6.96 um
17-03-18 01:27:13.810 -07 000000610 INF: FPGA: Xmit ZDACW 37141\n [Z Motor]
17-03-18 01:27:13.810 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:27:13.820 -07 000000610 INF: FPGA: 'ZDACW 37141' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:13.820 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:13.820 -07 000000625 INF: FPGA: Recv ZDACR 37141
17-03-18 01:27:13.830 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:13.830 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:27:13.910 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.993549,
17-03-18 01:27:13.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:13.980 -07 000000455 INF: FPGA: Recv ZSGSRD 35760
17-03-18 01:27:13.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:13.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:13.990 -07 000000461 INF: FPGA: Recv ZSGSRD 35748
17-03-18 01:27:14.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:14.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:14.000 -07 000000479 INF: FPGA: Recv ZSGSRD 35752
17-03-18 01:27:14.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:14.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:14.010 -07 000000479 INF: FPGA: Recv ZSGSRD 35760
17-03-18 01:27:14.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:14.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:14.020 -07 000000618 INF: FPGA: Recv ZSGSRD 35759
17-03-18 01:27:14.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:14.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:14.030 -07 000000590 INF: FPGA: Recv ZSGSRD 35756
17-03-18 01:27:14.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:14.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:14.040 -07 000000461 INF: FPGA: Recv ZSGSRD 35757
17-03-18 01:27:14.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:14.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:14.050 -07 000000479 INF: FPGA: Recv ZSGSRD 35760
17-03-18 01:27:14.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:14.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:14.060 -07 000000424 INF: FPGA: Recv ZSGSRD 35755
17-03-18 01:27:14.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:14.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:14.070 -07 000000591 INF: FPGA: Recv ZSGSRD 35754
17-03-18 01:27:14.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:14.080 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:14.080 -07 000000474 INF: FPGA: Recv ZPIEZORD 31543
17-03-18 01:27:14.090 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:14.090 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.667 V. Piezo Error = -9.3 V.
17-03-18 01:27:14.090 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35756 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35756 (-169.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35748 (-169.1 uncal um), Max = 35760 (-169.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:27:14.090 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35756, posNoise = 4, negNoise = 8
17-03-18 01:27:14.090 -07 000000610 INF: Z Motor: After move to -0.170021, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:14.090 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:27:14.090 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:14.090 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:14.090 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:14.090 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:14.090 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:27:14.090 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:14.090 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:27:14.090 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:27:14.090 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:27:14.090 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:27:14.090 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:27:14.090 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:27:14.090 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:27:14.090 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:27:14.090 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:27:14.100 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:27:14.110 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 01:27:14.110 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:27:14.110 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 01:27:14.110 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:27:14.110 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37318 150\n [Camera]
17-03-18 01:27:14.310 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:27:14.700 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:27:14.700 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:27:14.700 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:14.700 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:14.700 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 01:27:14.700 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:27:14.700 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:27:14.710 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:14.710 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:14.710 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:27:14.890 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37318 775
17-03-18 01:27:15.040 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:27:15.100 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:27:15.100 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:27:15.100 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:15.110 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:15.110 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:27:15.110 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 407 ms.
17-03-18 01:27:15.110 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:27:15.110 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:15.120 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:15.130 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 01:27:15.230 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:27:15.230 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:27:15.230 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:15.230 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:15.230 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:27:15.240 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:27:15.240 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:27:15.240 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:15.240 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:15.240 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:27:15.420 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:27:15.420 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:27:15.420 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37318 150' command took 2 ms to send, 1309 ms to get response, and 1313 ms overall
17-03-18 01:27:15.540 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:27:15.540 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.17002748135194. ------
17-03-18 01:27:15.550 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:15.550 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17644 mm
17-03-18 01:27:15.550 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:27:15.550 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:27:15.550 -07 000000447 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 01:27:15.550 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38543, sync = True, waitForSettling = False)
17-03-18 01:27:15.550 -07 000000502 INF: Z Motor: Moving to -0.176439 mm, started at -0.170027 mm, distance = -6.41 um
17-03-18 01:27:15.550 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:15.560 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:15.560 -07 000000502 INF: FPGA: Xmit ZDACW 38543\n [Z Motor]
17-03-18 01:27:15.560 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:27:15.570 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:15.570 -07 000000502 INF: FPGA: 'ZDACW 38543' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:27:15.570 -07 000000608 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:27:15.580 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:27:15.580 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:27:15.580 -07 000000447 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:15.580 -07 000000447 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:27:15.580 -07 000000447 INF: Y Motor: Moving 1342 steps-18
17-03-18 01:27:15.590 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:15.590 -07 000000479 INF: FPGA: Recv ZDACR 38543
17-03-18 01:27:15.600 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:27:15.600 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:27:15.600 -07 000000502 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 01:27:15.630 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:27:15.630 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:27:15.630 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:15.630 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:27:15.630 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:27:15.630 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:15.640 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:15.640 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:27:15.640 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:27:15.650 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:27:15.780 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:27:15.780 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:27:15.970 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 01:27:15.970 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:27:16.020 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:16.020 -07 000000487 INF: FPGA: Recv YRDPOS 131188
17-03-18 01:27:16.030 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:16.030 -07 000000447 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:16.030 -07 000000447 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 01:27:16.030 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.112 mm/sec
17-03-18 01:27:16.980 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:16.980 -07 000000474 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:27:16.990 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:16.990 -07 000000447 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:17.010 -07 000000447 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:27:17.010 -07 000000447 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:27:17.010 -07 000000447 INF: Y Motor: Moved to 64.0571 after 1459 ms (table move)
17-03-18 01:27:17.010 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176439 mm (DAC = 38543)
17-03-18 01:27:17.010 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:17.020 -07 000000438 INF: FPGA: Recv ZSGSRD 36763
17-03-18 01:27:17.020 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:27:17.020 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:17.020 -07 000000424 INF: FPGA: Recv ZSGSRD 36750
17-03-18 01:27:17.030 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:17.030 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:17.030 -07 000000467 INF: FPGA: Recv ZSGSRD 36751
17-03-18 01:27:17.040 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:17.040 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:17.040 -07 000000487 INF: FPGA: Recv ZSGSRD 36759
17-03-18 01:27:17.050 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:17.050 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:17.050 -07 000000438 INF: FPGA: Recv ZSGSRD 36756
17-03-18 01:27:17.060 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:17.060 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:17.060 -07 000000502 INF: FPGA: Recv ZSGSRD 36754
17-03-18 01:27:17.070 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:17.070 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:17.070 -07 000000591 INF: FPGA: Recv ZSGSRD 36754
17-03-18 01:27:17.080 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:17.080 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:17.080 -07 000000447 INF: FPGA: Recv ZSGSRD 36751
17-03-18 01:27:17.090 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:17.090 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:17.090 -07 000000487 INF: FPGA: Recv ZSGSRD 36753
17-03-18 01:27:17.100 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:17.100 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:17.100 -07 000000629 INF: FPGA: Recv ZSGSRD 36752
17-03-18 01:27:17.110 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:17.110 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:17.110 -07 000000438 INF: FPGA: Recv ZPIEZORD 32845
17-03-18 01:27:17.120 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:17.120 -07 000000461 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.6 V.
17-03-18 01:27:17.120 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36754 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36754 (-175.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36750 (-175.5 uncal um), Max = 36763 (-175.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:27:17.120 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36754, posNoise = 9, negNoise = 4
17-03-18 01:27:17.120 -07 000000461 INF: Z Motor: After move to -0.176439, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:17.120 -07 000000461 INF: Z Motor: Settle wait time = 1461 ms, measure time = 104 ms (allowed 150 ms), total time = 1565 ms
17-03-18 01:27:17.120 -07 000000461 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 01:27:17.170 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 01:27:17.170 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:27:17.170 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:17.170 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:17.170 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:17.170 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:17.170 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:27:17.170 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:17.170 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:17.170 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:27:17.170 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:17.170 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:27:17.190 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:27:17.190 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:27:17.190 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:27:17.240 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:27:17.260 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:27:17.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:27:17.540 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:27:17.540 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:27:17.540 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:27:17.540 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 01:27:17.580 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:27:17.580 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 01:27:17.580 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:27:17.650 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:27:17.650 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:17.650 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:27:17.650 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:27:17.680 -07 000000424 INF: Autofocus start
17-03-18 01:27:17.680 -07 000000424 INF: MeasureProfile start
17-03-18 01:27:17.680 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:17.680 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:17.690 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:27:17.690 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:27:17.690 -07 000000424 INF: MeasureProfile done
17-03-18 01:27:17.690 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:27:17.690 -07 000000424 INF: Autofocus finished
17-03-18 01:27:17.890 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:27:17.890 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 01:27:17.900 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.176438845069417. ----------
17-03-18 01:27:17.900 -07 000000610 INF: Cycle	87	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:27:17.900 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37076, sync = True, waitForSettling = True)
17-03-18 01:27:17.900 -07 000000610 INF: Z Motor: Moving to -0.169723 mm, started at -0.176439 mm, distance = 6.72 um
17-03-18 01:27:17.900 -07 000000610 INF: FPGA: Xmit ZDACW 37076\n [Z Motor]
17-03-18 01:27:17.900 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:27:17.910 -07 000000610 INF: FPGA: 'ZDACW 37076' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:27:17.910 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:17.910 -07 000000479 INF: FPGA: Recv ZDACR 37076
17-03-18 01:27:17.920 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:17.920 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:27:18.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:18.070 -07 000000618 INF: FPGA: Recv ZSGSRD 35706
17-03-18 01:27:18.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:18.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:18.080 -07 000000479 INF: FPGA: Recv ZSGSRD 35712
17-03-18 01:27:18.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:18.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:18.090 -07 000000502 INF: FPGA: Recv ZSGSRD 35709
17-03-18 01:27:18.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:18.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:18.100 -07 000000438 INF: FPGA: Recv ZSGSRD 35708
17-03-18 01:27:18.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:18.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:18.110 -07 000000625 INF: FPGA: Recv ZSGSRD 35708
17-03-18 01:27:18.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:18.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:18.120 -07 000000608 INF: FPGA: Recv ZSGSRD 35713
17-03-18 01:27:18.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:18.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:18.130 -07 000000455 INF: FPGA: Recv ZSGSRD 35712
17-03-18 01:27:18.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:18.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:18.140 -07 000000447 INF: FPGA: Recv ZSGSRD 35705
17-03-18 01:27:18.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:18.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:18.150 -07 000000467 INF: FPGA: Recv ZSGSRD 35709
17-03-18 01:27:18.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:18.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:18.160 -07 000000479 INF: FPGA: Recv ZSGSRD 35712
17-03-18 01:27:18.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:18.170 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:18.170 -07 000000591 INF: FPGA: Recv ZPIEZORD 31508
17-03-18 01:27:18.180 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 6 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:18.180 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.657 V. Piezo Error = -9.3 V.
17-03-18 01:27:18.180 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35709 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35709 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35705 (-168.8 uncal um), Max = 35713 (-168.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:27:18.180 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35709, posNoise = 4, negNoise = 4
17-03-18 01:27:18.180 -07 000000610 INF: Z Motor: After move to -0.169723, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:18.180 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:27:18.180 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:18.180 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:18.180 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:18.180 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:18.180 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:27:18.180 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:18.180 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:27:18.180 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:27:18.180 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:18.180 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:27:18.180 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:27:18.180 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:27:18.180 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:18.180 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:27:18.190 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:27:18.190 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:27:18.190 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:27:18.190 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:27:18.200 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:27:18.200 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:27:18.200 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37252 150\n [Camera]
17-03-18 01:27:18.400 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:27:18.790 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:27:18.790 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:27:18.790 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:18.790 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:27:18.790 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:27:18.790 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:18.790 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:18.790 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:27:18.800 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:18.800 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:27:18.980 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37252 775
17-03-18 01:27:19.130 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:27:19.190 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:27:19.190 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:27:19.190 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:19.190 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:27:19.190 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:27:19.190 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:19.190 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:19.190 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:27:19.200 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:19.200 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:27:19.270 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.003063,
17-03-18 01:27:19.320 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:27:19.320 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:27:19.320 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:19.320 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:27:19.320 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:27:19.320 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:19.450 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:19.450 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:27:19.450 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:19.450 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 01:27:19.510 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:27:19.510 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:27:19.510 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37252 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-18 01:27:19.510 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:27:19.510 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.169725543381277. ------
17-03-18 01:27:19.520 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17611 mm
17-03-18 01:27:19.520 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:27:19.520 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:19.520 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:27:19.520 -07 000000629 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 01:27:19.520 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38471, sync = True, waitForSettling = False)
17-03-18 01:27:19.520 -07 000000618 INF: Z Motor: Moving to -0.176109 mm, started at -0.169726 mm, distance = -6.38 um
17-03-18 01:27:19.520 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:19.530 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:19.530 -07 000000618 INF: FPGA: Xmit ZDACW 38471\n [Z Motor]
17-03-18 01:27:19.530 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:27:19.540 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:19.540 -07 000000618 INF: FPGA: 'ZDACW 38471' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:27:19.540 -07 000000424 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:27:19.550 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:27:19.550 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:27:19.550 -07 000000629 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:19.550 -07 000000629 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:27:19.550 -07 000000629 INF: Y Motor: Moving 1337 steps-12
17-03-18 01:27:19.560 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:19.560 -07 000000461 INF: FPGA: Recv ZDACR 38471
17-03-18 01:27:19.570 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:27:19.570 -07 000000618 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:27:19.570 -07 000000618 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 01:27:19.750 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:27:19.750 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:27:19.830 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:27:19.830 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:27:19.830 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:19.840 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:19.840 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:27:19.840 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:27:19.840 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:19.840 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:19.840 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 01:27:19.840 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-18 01:27:19.940 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:27:19.940 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:27:19.980 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:19.990 -07 000000608 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:27:19.990 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:27:19.990 -07 000000629 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:19.990 -07 000000629 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:27:19.990 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-18 01:27:20.940 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:20.940 -07 000000502 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:27:20.950 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:20.950 -07 000000629 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:20.970 -07 000000629 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:27:20.970 -07 000000629 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:27:20.970 -07 000000629 INF: Y Motor: Moved to 64.8789 after 1451 ms (table move)
17-03-18 01:27:20.980 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176109 mm (DAC = 38471)
17-03-18 01:27:20.980 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:20.980 -07 000000455 INF: FPGA: Recv ZSGSRD 36701
17-03-18 01:27:20.990 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:20.990 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:20.990 -07 000000608 INF: FPGA: Recv ZSGSRD 36700
17-03-18 01:27:21.000 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:21.000 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:21.000 -07 000000625 INF: FPGA: Recv ZSGSRD 36706
17-03-18 01:27:21.010 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:21.010 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:21.010 -07 000000591 INF: FPGA: Recv ZSGSRD 36705
17-03-18 01:27:21.020 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:21.020 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:21.020 -07 000000502 INF: FPGA: Recv ZSGSRD 36704
17-03-18 01:27:21.030 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:21.030 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:21.030 -07 000000608 INF: FPGA: Recv ZSGSRD 36710
17-03-18 01:27:21.040 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:21.040 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:21.040 -07 000000479 INF: FPGA: Recv ZSGSRD 36706
17-03-18 01:27:21.050 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:21.050 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:21.050 -07 000000591 INF: FPGA: Recv ZSGSRD 36702
17-03-18 01:27:21.060 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:21.060 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:21.060 -07 000000487 INF: FPGA: Recv ZSGSRD 36695
17-03-18 01:27:21.070 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:21.070 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:21.070 -07 000000608 INF: FPGA: Recv ZSGSRD 36699
17-03-18 01:27:21.080 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:21.080 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:21.080 -07 000000479 INF: FPGA: Recv ZPIEZORD 32776
17-03-18 01:27:21.090 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:21.090 -07 000000590 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.870 V. Piezo Error = -8.7 V.
17-03-18 01:27:21.090 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36703 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36703 (-175.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36695 (-175.2 uncal um), Max = 36710 (-175.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:27:21.090 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36703, posNoise = 7, negNoise = 8
17-03-18 01:27:21.090 -07 000000590 INF: Z Motor: After move to -0.176109, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:21.090 -07 000000590 INF: Z Motor: Settle wait time = 1454 ms, measure time = 110 ms (allowed 150 ms), total time = 1564 ms
17-03-18 01:27:21.090 -07 000000590 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:27:21.130 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 01:27:21.130 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:27:21.130 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:21.130 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:21.130 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:21.130 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:21.130 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:27:21.130 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:21.130 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:27:21.130 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:27:21.140 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:21.140 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:27:21.150 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:27:21.150 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:27:21.150 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:27:21.200 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:27:21.490 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:27:21.490 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:27:21.500 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:27:21.500 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656805360, 0x0, 559484976) start.
17-03-18 01:27:21.530 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:27:21.530 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 01:27:21.540 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:27:21.620 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656805360, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 01:27:21.620 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:21.620 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:27:21.620 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 01:27:21.640 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:21.640 -07 000000424 INF: Autofocus start
17-03-18 01:27:21.640 -07 000000424 INF: MeasureProfile start
17-03-18 01:27:21.650 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:21.650 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:27:21.650 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:27:21.660 -07 000000424 INF: MeasureProfile done
17-03-18 01:27:21.660 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:27:21.660 -07 000000424 INF: Autofocus finished
17-03-18 01:27:21.850 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:27:21.850 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:27:21.850 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176111210250187. ----------
17-03-18 01:27:21.850 -07 000000610 INF: Cycle	87	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:27:21.860 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37004, sync = True, waitForSettling = True)
17-03-18 01:27:21.860 -07 000000610 INF: Z Motor: Moving to -0.169393 mm, started at -0.176111 mm, distance = 6.72 um
17-03-18 01:27:21.860 -07 000000610 INF: FPGA: Xmit ZDACW 37004\n [Z Motor]
17-03-18 01:27:21.860 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:27:21.870 -07 000000610 INF: FPGA: 'ZDACW 37004' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:21.870 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:21.870 -07 000000591 INF: FPGA: Recv ZDACR 37004
17-03-18 01:27:21.880 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:21.880 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:27:22.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:22.030 -07 000000438 INF: FPGA: Recv ZSGSRD 35654
17-03-18 01:27:22.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:22.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:22.040 -07 000000447 INF: FPGA: Recv ZSGSRD 35662
17-03-18 01:27:22.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:22.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:22.050 -07 000000590 INF: FPGA: Recv ZSGSRD 35659
17-03-18 01:27:22.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:22.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:22.060 -07 000000629 INF: FPGA: Recv ZSGSRD 35662
17-03-18 01:27:22.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:22.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:22.070 -07 000000467 INF: FPGA: Recv ZSGSRD 35666
17-03-18 01:27:22.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:22.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:22.080 -07 000000455 INF: FPGA: Recv ZSGSRD 35656
17-03-18 01:27:22.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:22.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:22.090 -07 000000479 INF: FPGA: Recv ZSGSRD 35658
17-03-18 01:27:22.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:22.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:22.100 -07 000000591 INF: FPGA: Recv ZSGSRD 35653
17-03-18 01:27:22.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:22.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:22.110 -07 000000438 INF: FPGA: Recv ZSGSRD 35656
17-03-18 01:27:22.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:22.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:22.120 -07 000000424 INF: FPGA: Recv ZSGSRD 35659
17-03-18 01:27:22.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:22.130 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:22.130 -07 000000461 INF: FPGA: Recv ZPIEZORD 31375
17-03-18 01:27:22.140 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:22.140 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.4 V.
17-03-18 01:27:22.140 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35658 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35658 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35653 (-168.5 uncal um), Max = 35666 (-168.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:27:22.140 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35658, posNoise = 8, negNoise = 5
17-03-18 01:27:22.140 -07 000000610 INF: Z Motor: After move to -0.169393, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:22.140 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:27:22.140 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:22.140 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:22.140 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:22.140 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:22.140 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:27:22.140 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:22.140 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:27:22.140 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:27:22.140 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:22.140 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:27:22.140 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:27:22.140 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:27:22.150 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:27:22.150 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:27:22.150 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:27:22.150 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:27:22.150 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:27:22.150 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:27:22.160 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:27:22.160 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:27:22.160 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37181 150\n [Camera]
17-03-18 01:27:22.260 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:27:22.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:27:22.360 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:27:22.750 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:27:22.750 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:27:22.750 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:22.750 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:27:22.750 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:27:22.750 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:22.760 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:22.760 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:27:22.760 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:22.760 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:27:22.940 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37181 775
17-03-18 01:27:23.090 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:27:23.140 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 01:27:23.140 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 01:27:23.140 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:23.140 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 01:27:23.140 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:27:23.140 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:23.150 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:27:23.150 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:23.150 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:27:23.150 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:27:23.280 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:27:23.280 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:27:23.280 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:23.280 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:23.280 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:27:23.280 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:27:23.280 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:27:23.290 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:23.290 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:23.290 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:27:23.470 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:27:23.480 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:27:23.480 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37181 150' command took 2 ms to send, 1311 ms to get response, and 1316 ms overall
17-03-18 01:27:23.480 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:27:23.480 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.169397908562047. ------
17-03-18 01:27:23.480 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:23.480 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17609 mm
17-03-18 01:27:23.480 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:27:23.490 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:27:23.490 -07 000000467 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 01:27:23.490 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:23.490 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 01:27:23.490 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:23.490 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38466, sync = True, waitForSettling = False)
17-03-18 01:27:23.490 -07 000000438 INF: Z Motor: Moving to -0.176086 mm, started at -0.169398 mm, distance = -6.69 um
17-03-18 01:27:23.490 -07 000000608 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:27:23.500 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:23.500 -07 000000467 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:23.500 -07 000000467 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:27:23.500 -07 000000467 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:27:23.500 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:27:23.510 -07 000000438 INF: FPGA: Xmit ZDACW 38466\n [Z Motor]
17-03-18 01:27:23.510 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:27:23.520 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:27:23.520 -07 000000438 INF: FPGA: 'ZDACW 38466' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:27:23.530 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:23.530 -07 000000447 INF: FPGA: Recv ZDACR 38466
17-03-18 01:27:23.540 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:27:23.540 -07 000000438 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:27:23.690 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:27:23.690 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:27:23.690 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:23.690 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:27:23.690 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:27:23.690 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:23.690 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:23.690 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:27:23.690 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:23.700 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:27:23.700 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:27:23.700 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 199 ms to get response, and 215 ms overall
17-03-18 01:27:23.890 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:27:23.890 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:27:23.940 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:23.940 -07 000000479 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:27:23.950 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:27:23.950 -07 000000467 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:23.950 -07 000000467 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:27:23.950 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 01:27:24.630 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.996267,
17-03-18 01:27:24.900 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:24.900 -07 000000461 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:27:24.910 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:24.910 -07 000000467 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:24.940 -07 000000467 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:27:24.940 -07 000000467 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:27:24.940 -07 000000467 INF: Y Motor: Moved to 65.7139 after 1449 ms (table move)
17-03-18 01:27:24.940 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176086 mm (DAC = 38466)
17-03-18 01:27:24.940 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:24.940 -07 000000502 INF: FPGA: Recv ZSGSRD 36707
17-03-18 01:27:24.950 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:27:24.950 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:24.950 -07 000000438 INF: FPGA: Recv ZSGSRD 36701
17-03-18 01:27:24.960 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:24.960 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:24.960 -07 000000608 INF: FPGA: Recv ZSGSRD 36698
17-03-18 01:27:24.970 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:24.970 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:24.970 -07 000000590 INF: FPGA: Recv ZSGSRD 36705
17-03-18 01:27:24.980 -07 000000455 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:24.980 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:24.980 -07 000000502 INF: FPGA: Recv ZSGSRD 36699
17-03-18 01:27:24.990 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:24.990 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:24.990 -07 000000618 INF: FPGA: Recv ZSGSRD 36698
17-03-18 01:27:25.000 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:25.000 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:25.000 -07 000000629 INF: FPGA: Recv ZSGSRD 36698
17-03-18 01:27:25.010 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:25.010 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:25.010 -07 000000461 INF: FPGA: Recv ZSGSRD 36692
17-03-18 01:27:25.020 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:25.020 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:25.020 -07 000000502 INF: FPGA: Recv ZSGSRD 36696
17-03-18 01:27:25.030 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:25.030 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:25.030 -07 000000479 INF: FPGA: Recv ZSGSRD 36705
17-03-18 01:27:25.040 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:25.040 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:25.040 -07 000000487 INF: FPGA: Recv ZPIEZORD 32778
17-03-18 01:27:25.050 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:25.050 -07 000000455 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.870 V. Piezo Error = -8.7 V.
17-03-18 01:27:25.050 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36700 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36698 (-175.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36692 (-175.2 uncal um), Max = 36707 (-175.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:27:25.050 -07 000000455 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36700, posNoise = 7, negNoise = 8
17-03-18 01:27:25.050 -07 000000455 INF: Z Motor: After move to -0.176086, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:25.050 -07 000000455 INF: Z Motor: Settle wait time = 1450 ms, measure time = 107 ms (allowed 150 ms), total time = 1557 ms
17-03-18 01:27:25.050 -07 000000455 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:27:25.100 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 01:27:25.100 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:27:25.100 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:25.100 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:25.100 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:25.100 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:25.100 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:27:25.100 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:25.100 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:27:25.100 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:27:25.110 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:25.110 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:27:25.120 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:27:25.120 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:27:25.120 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:27:25.170 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 01:27:25.470 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 01:27:25.470 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 01:27:25.470 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:27:25.470 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637991696, 0x0, 559484976) start.
17-03-18 01:27:25.510 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:27:25.510 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:27:25.510 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:27:25.590 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637991696, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 01:27:25.590 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:25.590 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:27:25.590 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 01:27:25.610 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:25.610 -07 000000618 INF: Autofocus start
17-03-18 01:27:25.610 -07 000000618 INF: MeasureProfile start
17-03-18 01:27:25.610 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:25.620 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:27:25.620 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:27:25.620 -07 000000618 INF: MeasureProfile done
17-03-18 01:27:25.620 -07 000000618 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:27:25.620 -07 000000618 INF: Autofocus finished
17-03-18 01:27:25.820 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:27:25.820 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:27:25.820 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.176091937613762. ----------
17-03-18 01:27:25.830 -07 000000610 INF: Cycle	87	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:27:25.830 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36946, sync = True, waitForSettling = True)
17-03-18 01:27:25.830 -07 000000610 INF: Z Motor: Moving to -0.169128 mm, started at -0.176092 mm, distance = 6.96 um
17-03-18 01:27:25.830 -07 000000610 INF: FPGA: Xmit ZDACW 36946\n [Z Motor]
17-03-18 01:27:25.830 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:27:25.840 -07 000000610 INF: FPGA: 'ZDACW 36946' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:27:25.840 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:25.840 -07 000000629 INF: FPGA: Recv ZDACR 36946
17-03-18 01:27:25.850 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:25.850 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:27:26.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:26.000 -07 000000625 INF: FPGA: Recv ZSGSRD 35618
17-03-18 01:27:26.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:26.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:26.010 -07 000000618 INF: FPGA: Recv ZSGSRD 35619
17-03-18 01:27:26.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:26.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:26.020 -07 000000591 INF: FPGA: Recv ZSGSRD 35613
17-03-18 01:27:26.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:26.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:26.030 -07 000000474 INF: FPGA: Recv ZSGSRD 35612
17-03-18 01:27:26.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:26.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:26.040 -07 000000467 INF: FPGA: Recv ZSGSRD 35614
17-03-18 01:27:26.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:26.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:26.050 -07 000000438 INF: FPGA: Recv ZSGSRD 35622
17-03-18 01:27:26.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:26.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:26.060 -07 000000487 INF: FPGA: Recv ZSGSRD 35615
17-03-18 01:27:26.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:26.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:26.070 -07 000000447 INF: FPGA: Recv ZSGSRD 35615
17-03-18 01:27:26.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:26.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:26.080 -07 000000502 INF: FPGA: Recv ZSGSRD 35621
17-03-18 01:27:26.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:26.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:26.090 -07 000000618 INF: FPGA: Recv ZSGSRD 35620
17-03-18 01:27:26.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:26.100 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:26.100 -07 000000479 INF: FPGA: Recv ZPIEZORD 31343
17-03-18 01:27:26.110 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:26.110 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.638 V. Piezo Error = -9.4 V.
17-03-18 01:27:26.110 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35617 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35616 (-168.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35612 (-168.2 uncal um), Max = 35622 (-168.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:27:26.110 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35617, posNoise = 5, negNoise = 5
17-03-18 01:27:26.110 -07 000000610 INF: Z Motor: After move to -0.169128, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:26.110 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:27:26.110 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:26.110 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:26.110 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:26.110 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:26.110 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:27:26.110 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:27:26.110 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:27:26.110 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:26.110 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 01:27:26.110 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:27:26.110 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:26.110 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:27:26.120 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:27:26.120 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:27:26.120 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:27:26.120 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:27:26.130 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:27:26.130 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:27:26.130 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:27:26.130 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:27:26.130 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37123 150\n [Camera]
17-03-18 01:27:26.330 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:27:26.720 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:27:26.720 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:27:26.720 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:26.720 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:26.720 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:27:26.720 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:27:26.720 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:27:26.720 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:26.720 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:26.720 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:27:26.910 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37123 775
17-03-18 01:27:27.060 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:27:27.120 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:27:27.120 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:27:27.120 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:27.120 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:27:27.120 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:27:27.120 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:27.120 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:27.120 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:27:27.130 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:27.130 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:27:27.250 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:27:27.250 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:27:27.250 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:27.370 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:27:27.370 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:27:27.370 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:27:27.370 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:27:27.370 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:27.370 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:27.370 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:27:27.370 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:27.370 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:27:27.440 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:27:27.440 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:27:27.440 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37123 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-18 01:27:27.440 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:27:27.440 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.169134515864235. ------
17-03-18 01:27:27.450 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:27.450 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17549 mm
17-03-18 01:27:27.450 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:27:27.450 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:27.450 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:27:27.450 -07 000000618 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-18 01:27:27.450 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 38335, sync = True, waitForSettling = False)
17-03-18 01:27:27.450 -07 000000487 INF: Z Motor: Moving to -0.175486 mm, started at -0.169135 mm, distance = -6.35 um
17-03-18 01:27:27.460 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:27.460 -07 000000487 INF: FPGA: Xmit ZDACW 38335\n [Z Motor]
17-03-18 01:27:27.460 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:27:27.470 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:27.470 -07 000000487 INF: FPGA: 'ZDACW 38335' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:27:27.470 -07 000000461 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:27:27.480 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:27:27.480 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:27:27.480 -07 000000618 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:27.480 -07 000000618 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:27:27.480 -07 000000618 INF: Y Motor: Moving 1342 steps-18
17-03-18 01:27:27.490 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:27.490 -07 000000424 INF: FPGA: Recv ZDACR 38335
17-03-18 01:27:27.500 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:27:27.500 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:27:27.500 -07 000000487 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 01:27:27.680 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:27:27.680 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:27:27.770 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:27:27.770 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:27:27.770 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:27.770 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:27:27.770 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:27:27.770 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:27.770 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:27.770 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:27.770 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 01:27:27.780 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:27:27.880 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 01:27:27.880 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 401 ms overall
17-03-18 01:27:27.920 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:27.920 -07 000000590 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:27:27.930 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:27:27.930 -07 000000618 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:27.930 -07 000000618 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:27:27.930 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.839 mm, average velocity = 2.092 mm/sec
17-03-18 01:27:28.880 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:28.880 -07 000000608 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:27:28.890 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:28.890 -07 000000618 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:28.910 -07 000000618 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:27:28.910 -07 000000618 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:27:28.910 -07 000000618 INF: Y Motor: Moved to 66.5391 after 1463 ms (table move)
17-03-18 01:27:28.920 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175486 mm (DAC = 38335)
17-03-18 01:27:28.920 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:28.920 -07 000000625 INF: FPGA: Recv ZSGSRD 36615
17-03-18 01:27:28.930 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:27:28.930 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:28.930 -07 000000591 INF: FPGA: Recv ZSGSRD 36605
17-03-18 01:27:28.940 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:28.940 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:28.940 -07 000000590 INF: FPGA: Recv ZSGSRD 36608
17-03-18 01:27:28.950 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:28.950 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:28.950 -07 000000461 INF: FPGA: Recv ZSGSRD 36608
17-03-18 01:27:28.960 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:28.960 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:28.960 -07 000000625 INF: FPGA: Recv ZSGSRD 36618
17-03-18 01:27:28.970 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:28.970 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:28.970 -07 000000474 INF: FPGA: Recv ZSGSRD 36604
17-03-18 01:27:28.980 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:28.980 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:28.980 -07 000000629 INF: FPGA: Recv ZSGSRD 36609
17-03-18 01:27:28.990 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:28.990 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:28.990 -07 000000461 INF: FPGA: Recv ZSGSRD 36603
17-03-18 01:27:29.000 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:29.000 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:29.000 -07 000000625 INF: FPGA: Recv ZSGSRD 36603
17-03-18 01:27:29.010 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:29.010 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:29.010 -07 000000447 INF: FPGA: Recv ZSGSRD 36612
17-03-18 01:27:29.020 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:29.020 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:29.020 -07 000000438 INF: FPGA: Recv ZPIEZORD 32661
17-03-18 01:27:29.030 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:29.030 -07 000000479 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.850 V. Piezo Error = -8.7 V.
17-03-18 01:27:29.030 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36608 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36608 (-174.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36603 (-174.6 uncal um), Max = 36618 (-174.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:27:29.030 -07 000000479 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36608, posNoise = 10, negNoise = 5
17-03-18 01:27:29.030 -07 000000479 INF: Z Motor: After move to -0.175486, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:29.030 -07 000000479 INF: Z Motor: Settle wait time = 1467 ms, measure time = 107 ms (allowed 150 ms), total time = 1574 ms
17-03-18 01:27:29.030 -07 000000479 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:27:29.080 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 01:27:29.080 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:27:29.080 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:29.080 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:29.080 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:29.080 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:29.080 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:27:29.080 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:29.080 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:29.080 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:27:29.090 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:29.090 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:27:29.100 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:27:29.100 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:27:29.100 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:27:29.150 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:27:29.450 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:27:29.450 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:27:29.450 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:27:29.450 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 01:27:29.490 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:27:29.490 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:27:29.490 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 01:27:29.570 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:27:29.570 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:29.570 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:27:29.570 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 01:27:29.590 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:29.590 -07 000000467 INF: Autofocus start
17-03-18 01:27:29.590 -07 000000467 INF: MeasureProfile start
17-03-18 01:27:29.590 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:29.600 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:27:29.600 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:27:29.600 -07 000000467 INF: MeasureProfile done
17-03-18 01:27:29.600 -07 000000467 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:27:29.600 -07 000000467 INF: Autofocus finished
17-03-18 01:27:29.800 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:27:29.800 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:27:29.800 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.17550091009672. ----------
17-03-18 01:27:29.800 -07 000000610 INF: Cycle	87	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:27:29.810 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36868, sync = True, waitForSettling = True)
17-03-18 01:27:29.810 -07 000000610 INF: Z Motor: Moving to -0.168771 mm, started at -0.175501 mm, distance = 6.73 um
17-03-18 01:27:29.810 -07 000000610 INF: FPGA: Xmit ZDACW 36868\n [Z Motor]
17-03-18 01:27:29.810 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 01:27:29.820 -07 000000610 INF: FPGA: 'ZDACW 36868' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:29.820 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:29.820 -07 000000424 INF: FPGA: Recv ZDACR 36868
17-03-18 01:27:29.830 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:29.830 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:27:29.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:29.990 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.990831,
17-03-18 01:27:29.990 -07 000000447 INF: FPGA: Recv ZSGSRD 35567
17-03-18 01:27:30.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 01:27:30.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:30.010 -07 000000618 INF: FPGA: Recv ZSGSRD 35563
17-03-18 01:27:30.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:27:30.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:30.030 -07 000000608 INF: FPGA: Recv ZSGSRD 35562
17-03-18 01:27:30.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:27:30.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:30.050 -07 000000590 INF: FPGA: Recv ZSGSRD 35566
17-03-18 01:27:30.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:27:30.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:30.070 -07 000000479 INF: FPGA: Recv ZSGSRD 35562
17-03-18 01:27:30.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:27:30.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:30.080 -07 000000479 INF: FPGA: Recv ZSGSRD 35570
17-03-18 01:27:30.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:30.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:30.090 -07 000000625 INF: FPGA: Recv ZSGSRD 35562
17-03-18 01:27:30.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:30.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:30.100 -07 000000447 INF: FPGA: Recv ZSGSRD 35563
17-03-18 01:27:30.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:30.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:30.110 -07 000000608 INF: FPGA: Recv ZSGSRD 35551
17-03-18 01:27:30.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:30.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:30.120 -07 000000467 INF: FPGA: Recv ZSGSRD 35568
17-03-18 01:27:30.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:30.130 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:30.130 -07 000000455 INF: FPGA: Recv ZPIEZORD 31264
17-03-18 01:27:30.140 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:30.140 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -9.5 V.
17-03-18 01:27:30.140 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35563 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35563 (-167.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35551 (-167.8 uncal um), Max = 35570 (-168.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 01:27:30.140 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35563, posNoise = 7, negNoise = 12
17-03-18 01:27:30.140 -07 000000610 INF: Z Motor: After move to -0.168771, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:30.140 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-18 01:27:30.140 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:30.140 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:30.140 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:30.140 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:30.140 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:27:30.140 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:30.140 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:27:30.140 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:27:30.140 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:27:30.140 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:27:30.140 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:27:30.140 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:27:30.140 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:27:30.150 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:27:30.150 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:27:30.150 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:27:30.160 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:27:30.160 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:27:30.160 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:27:30.160 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:27:30.170 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37045 150\n [Camera]
17-03-18 01:27:30.370 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 01:27:30.760 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:27:30.760 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:27:30.760 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:30.760 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:27:30.760 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:27:30.760 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:30.760 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:30.760 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:27:30.760 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:30.760 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-18 01:27:30.950 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37045 775
17-03-18 01:27:31.100 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:27:31.150 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 01:27:31.150 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 01:27:31.150 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:31.150 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:31.150 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:27:31.150 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:27:31.150 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:31.160 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:27:31.160 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:31.160 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:27:31.290 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:27:31.290 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:27:31.290 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:31.400 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:27:31.400 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:27:31.400 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:31.410 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:31.410 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:31.410 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) start.
17-03-18 01:27:31.410 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:27:31.480 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:27:31.480 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:27:31.480 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37045 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-18 01:27:31.480 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:27:31.480 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.16878760840858. ------
17-03-18 01:27:31.490 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:31.490 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17555 mm
17-03-18 01:27:31.490 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:27:31.490 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:31.490 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:27:31.490 -07 000000502 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 01:27:31.490 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38349, sync = True, waitForSettling = False)
17-03-18 01:27:31.490 -07 000000625 INF: Z Motor: Moving to -0.175550 mm, started at -0.168788 mm, distance = -6.76 um
17-03-18 01:27:31.500 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:31.500 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:31.500 -07 000000455 INF: FPGA: Recv YRDPOS 136273
17-03-18 01:27:31.510 -07 000000625 INF: FPGA: Xmit ZDACW 38349\n [Z Motor]
17-03-18 01:27:31.510 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:27:31.510 -07 000000502 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:31.510 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:27:31.510 -07 000000502 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:27:31.510 -07 000000502 INF: Y Motor: Moving 1349 steps-28
17-03-18 01:27:31.520 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:27:31.520 -07 000000625 INF: FPGA: 'ZDACW 38349' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:27:31.530 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:27:31.540 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:31.540 -07 000000447 INF: FPGA: Recv ZDACR 38349
17-03-18 01:27:31.550 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:27:31.550 -07 000000625 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 01:27:31.720 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:27:31.720 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:27:31.810 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:27:31.810 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:27:31.810 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:31.810 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:27:31.810 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:27:31.810 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:31.810 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:31.810 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:31.810 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 01:27:31.820 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:27:31.900 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 01:27:31.900 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 01:27:31.940 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:31.950 -07 000000474 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:27:31.960 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:31.960 -07 000000502 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:31.960 -07 000000502 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 01:27:31.960 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.157 mm/sec
17-03-18 01:27:32.260 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:27:32.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:27:32.910 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:32.910 -07 000000608 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:27:32.920 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:32.920 -07 000000502 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:32.940 -07 000000502 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:27:32.940 -07 000000502 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:27:32.940 -07 000000502 INF: Y Motor: Moved to 67.3721 after 1450 ms (table move)
17-03-18 01:27:32.940 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175550 mm (DAC = 38349)
17-03-18 01:27:32.950 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:32.950 -07 000000591 INF: FPGA: Recv ZSGSRD 36619
17-03-18 01:27:32.960 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:32.960 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:32.960 -07 000000424 INF: FPGA: Recv ZSGSRD 36621
17-03-18 01:27:32.970 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:32.970 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:32.970 -07 000000590 INF: FPGA: Recv ZSGSRD 36616
17-03-18 01:27:32.980 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:32.980 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:32.980 -07 000000461 INF: FPGA: Recv ZSGSRD 36615
17-03-18 01:27:32.990 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:32.990 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:32.990 -07 000000474 INF: FPGA: Recv ZSGSRD 36617
17-03-18 01:27:33.000 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:33.000 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:33.000 -07 000000424 INF: FPGA: Recv ZSGSRD 36623
17-03-18 01:27:33.010 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:33.010 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:33.010 -07 000000479 INF: FPGA: Recv ZSGSRD 36612
17-03-18 01:27:33.020 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:33.020 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:33.020 -07 000000461 INF: FPGA: Recv ZSGSRD 36611
17-03-18 01:27:33.030 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:33.030 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:33.030 -07 000000502 INF: FPGA: Recv ZSGSRD 36615
17-03-18 01:27:33.040 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:33.040 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:33.040 -07 000000618 INF: FPGA: Recv ZSGSRD 36618
17-03-18 01:27:33.050 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:33.050 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:33.050 -07 000000479 INF: FPGA: Recv ZPIEZORD 32680
17-03-18 01:27:33.060 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:33.060 -07 000000487 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.852 V. Piezo Error = -8.7 V.
17-03-18 01:27:33.060 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36617 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36616 (-174.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36611 (-174.6 uncal um), Max = 36623 (-174.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:27:33.060 -07 000000487 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36617, posNoise = 6, negNoise = 6
17-03-18 01:27:33.060 -07 000000487 INF: Z Motor: After move to -0.175550, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:33.060 -07 000000487 INF: Z Motor: Settle wait time = 1453 ms, measure time = 111 ms (allowed 150 ms), total time = 1564 ms
17-03-18 01:27:33.060 -07 000000487 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:27:33.100 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 01:27:33.100 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:27:33.100 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:33.100 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:33.100 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:33.100 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:33.100 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:27:33.100 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:33.100 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:33.100 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:27:33.110 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:33.110 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:27:33.120 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:27:33.120 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:27:33.120 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:27:33.170 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:27:33.470 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:27:33.470 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:27:33.470 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:27:33.470 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2617245512, 0x0, 559484976) start.
17-03-18 01:27:33.510 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:27:33.510 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:27:33.510 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:27:33.600 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2617245512, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:27:33.600 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:33.600 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:27:33.600 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:27:33.610 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:33.610 -07 000000424 INF: Autofocus start
17-03-18 01:27:33.610 -07 000000424 INF: MeasureProfile start
17-03-18 01:27:33.610 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:33.620 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:27:33.620 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:27:33.620 -07 000000424 INF: MeasureProfile done
17-03-18 01:27:33.620 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:27:33.620 -07 000000424 INF: Autofocus finished
17-03-18 01:27:33.820 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:27:33.820 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:27:33.820 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.175558728005996. ----------
17-03-18 01:27:33.820 -07 000000610 INF: Cycle	87	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:27:33.830 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36882, sync = True, waitForSettling = True)
17-03-18 01:27:33.830 -07 000000610 INF: Z Motor: Moving to -0.168835 mm, started at -0.175559 mm, distance = 6.72 um
17-03-18 01:27:33.830 -07 000000610 INF: FPGA: Xmit ZDACW 36882\n [Z Motor]
17-03-18 01:27:33.830 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:27:33.840 -07 000000610 INF: FPGA: 'ZDACW 36882' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:27:33.840 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:33.840 -07 000000438 INF: FPGA: Recv ZDACR 36882
17-03-18 01:27:33.850 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:33.850 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:27:34.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:34.000 -07 000000424 INF: FPGA: Recv ZSGSRD 35579
17-03-18 01:27:34.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:34.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:34.010 -07 000000608 INF: FPGA: Recv ZSGSRD 35576
17-03-18 01:27:34.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:34.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:34.020 -07 000000461 INF: FPGA: Recv ZSGSRD 35572
17-03-18 01:27:34.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:34.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:34.030 -07 000000438 INF: FPGA: Recv ZSGSRD 35569
17-03-18 01:27:34.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:34.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:34.040 -07 000000625 INF: FPGA: Recv ZSGSRD 35571
17-03-18 01:27:34.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:34.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:34.050 -07 000000447 INF: FPGA: Recv ZSGSRD 35573
17-03-18 01:27:34.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:34.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:34.060 -07 000000461 INF: FPGA: Recv ZSGSRD 35571
17-03-18 01:27:34.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:34.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:34.070 -07 000000479 INF: FPGA: Recv ZSGSRD 35569
17-03-18 01:27:34.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:34.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:34.080 -07 000000479 INF: FPGA: Recv ZSGSRD 35574
17-03-18 01:27:34.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:27:34.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:34.090 -07 000000438 INF: FPGA: Recv ZSGSRD 35575
17-03-18 01:27:34.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:34.100 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:34.100 -07 000000424 INF: FPGA: Recv ZPIEZORD 31284
17-03-18 01:27:34.110 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:34.110 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -9.4 V.
17-03-18 01:27:34.110 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35573 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35572 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35569 (-168.0 uncal um), Max = 35579 (-168.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:27:34.110 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35573, posNoise = 6, negNoise = 4
17-03-18 01:27:34.110 -07 000000610 INF: Z Motor: After move to -0.168835, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:34.110 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:27:34.110 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:34.110 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:34.110 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:34.110 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:27:34.110 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:34.110 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:27:34.110 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:34.110 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:27:34.110 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:27:34.110 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:27:34.110 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 01:27:34.110 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:27:34.120 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:27:34.120 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:27:34.120 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:27:34.120 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:27:34.120 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:27:34.120 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:27:34.120 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:27:34.120 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:27:34.130 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37059 150\n [Camera]
17-03-18 01:27:34.330 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:27:34.720 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:27:34.720 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:27:34.720 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:34.720 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:34.720 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:27:34.720 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:27:34.720 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:27:34.720 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:34.720 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:34.720 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:27:34.910 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37059 775
17-03-18 01:27:35.060 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:27:35.120 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:27:35.120 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:27:35.120 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:35.120 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:27:35.120 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:27:35.120 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:35.120 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:35.130 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:27:35.130 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:35.130 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:27:35.250 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:27:35.250 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:27:35.250 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:35.360 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:27:35.360 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:27:35.360 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:35.370 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:35.370 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:35.370 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:27:35.370 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:27:35.390 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.000345,
17-03-18 01:27:35.440 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:27:35.440 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:27:35.440 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37059 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-18 01:27:35.440 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:27:35.440 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.168851850529997. ------
17-03-18 01:27:35.450 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:35.450 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17517 mm
17-03-18 01:27:35.450 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:27:35.450 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:35.450 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:27:35.450 -07 000000502 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 01:27:35.450 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38265, sync = True, waitForSettling = False)
17-03-18 01:27:35.450 -07 000000424 INF: Z Motor: Moving to -0.175166 mm, started at -0.168852 mm, distance = -6.31 um
17-03-18 01:27:35.460 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:27:35.460 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:35.460 -07 000000590 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:27:35.470 -07 000000424 INF: FPGA: Xmit ZDACW 38265\n [Z Motor]
17-03-18 01:27:35.470 -07 000000502 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:27:35.470 -07 000000502 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:35.470 -07 000000502 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:27:35.470 -07 000000502 INF: Y Motor: Moving 1345 steps-22
17-03-18 01:27:35.470 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:27:35.480 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:27:35.480 -07 000000424 INF: FPGA: 'ZDACW 38265' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:27:35.490 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:27:35.500 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:35.500 -07 000000479 INF: FPGA: Recv ZDACR 38265
17-03-18 01:27:35.510 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:27:35.510 -07 000000424 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 01:27:35.680 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:27:35.680 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 221 ms overall
17-03-18 01:27:35.770 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:27:35.770 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:27:35.770 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:35.770 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:27:35.770 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:27:35.770 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:35.770 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:35.770 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:35.770 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 01:27:35.780 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:27:35.860 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:27:35.860 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:27:35.910 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:35.910 -07 000000618 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:27:35.920 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:35.920 -07 000000502 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:35.920 -07 000000502 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:27:35.920 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.117 mm/sec
17-03-18 01:27:36.870 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:36.870 -07 000000438 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:27:36.880 -07 000000502 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:36.880 -07 000000502 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:36.900 -07 000000502 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:27:36.900 -07 000000502 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:27:36.900 -07 000000502 INF: Y Motor: Moved to 68.2051 after 1450 ms (table move)
17-03-18 01:27:36.900 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175166 mm (DAC = 38265)
17-03-18 01:27:36.900 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:36.910 -07 000000591 INF: FPGA: Recv ZSGSRD 36572
17-03-18 01:27:36.910 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:27:36.910 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:36.910 -07 000000625 INF: FPGA: Recv ZSGSRD 36553
17-03-18 01:27:36.920 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:36.920 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:36.920 -07 000000447 INF: FPGA: Recv ZSGSRD 36558
17-03-18 01:27:36.930 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:36.930 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:36.930 -07 000000438 INF: FPGA: Recv ZSGSRD 36560
17-03-18 01:27:36.940 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:36.940 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:36.940 -07 000000591 INF: FPGA: Recv ZSGSRD 36558
17-03-18 01:27:36.950 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:36.950 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:36.950 -07 000000625 INF: FPGA: Recv ZSGSRD 36559
17-03-18 01:27:36.960 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:36.960 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:36.960 -07 000000455 INF: FPGA: Recv ZSGSRD 36558
17-03-18 01:27:36.970 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:36.970 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:36.970 -07 000000502 INF: FPGA: Recv ZSGSRD 36561
17-03-18 01:27:36.980 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:36.980 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:36.980 -07 000000629 INF: FPGA: Recv ZSGSRD 36557
17-03-18 01:27:36.990 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:36.990 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:36.990 -07 000000487 INF: FPGA: Recv ZSGSRD 36559
17-03-18 01:27:37.000 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:37.000 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:37.000 -07 000000474 INF: FPGA: Recv ZPIEZORD 32587
17-03-18 01:27:37.010 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:37.010 -07 000000467 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.839 V. Piezo Error = -8.8 V.
17-03-18 01:27:37.010 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36560 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36558 (-174.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36553 (-174.3 uncal um), Max = 36572 (-174.4 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:27:37.010 -07 000000467 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36560, posNoise = 12, negNoise = 7
17-03-18 01:27:37.010 -07 000000467 INF: Z Motor: After move to -0.175166, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:37.010 -07 000000467 INF: Z Motor: Settle wait time = 1453 ms, measure time = 102 ms (allowed 150 ms), total time = 1555 ms
17-03-18 01:27:37.010 -07 000000467 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:27:37.060 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-18 01:27:37.060 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:27:37.060 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:37.060 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:37.060 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:37.060 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:37.060 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:27:37.060 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:37.060 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:37.060 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:27:37.070 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:37.070 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:27:37.070 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:27:37.070 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:27:37.080 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:27:37.120 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:27:37.260 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:27:37.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:27:37.420 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:27:37.420 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:27:37.420 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:27:37.420 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) start.
17-03-18 01:27:37.460 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:27:37.460 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:27:37.460 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 01:27:37.550 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 01:27:37.550 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:37.550 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:27:37.550 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 01:27:37.570 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:37.570 -07 000000461 INF: Autofocus start
17-03-18 01:27:37.570 -07 000000461 INF: MeasureProfile start
17-03-18 01:27:37.570 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:37.580 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:37.580 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:27:37.590 -07 000000461 INF: MeasureProfile done
17-03-18 01:27:37.590 -07 000000461 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:27:37.590 -07 000000461 INF: Autofocus finished
17-03-18 01:27:37.780 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:27:37.780 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 01:27:37.780 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175192547913916. ----------
17-03-18 01:27:37.790 -07 000000610 INF: Cycle	87	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:27:37.790 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36762, sync = True, waitForSettling = True)
17-03-18 01:27:37.790 -07 000000610 INF: Z Motor: Moving to -0.168286 mm, started at -0.175193 mm, distance = 6.91 um
17-03-18 01:27:37.790 -07 000000610 INF: FPGA: Xmit ZDACW 36762\n [Z Motor]
17-03-18 01:27:37.790 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 01:27:37.800 -07 000000610 INF: FPGA: 'ZDACW 36762' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:37.800 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:37.800 -07 000000591 INF: FPGA: Recv ZDACR 36762
17-03-18 01:27:37.810 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:37.810 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:27:37.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:37.960 -07 000000629 INF: FPGA: Recv ZSGSRD 35488
17-03-18 01:27:37.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:37.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:37.970 -07 000000424 INF: FPGA: Recv ZSGSRD 35485
17-03-18 01:27:37.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:37.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:37.980 -07 000000438 INF: FPGA: Recv ZSGSRD 35484
17-03-18 01:27:37.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:37.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:37.990 -07 000000618 INF: FPGA: Recv ZSGSRD 35485
17-03-18 01:27:38.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:38.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:38.000 -07 000000467 INF: FPGA: Recv ZSGSRD 35490
17-03-18 01:27:38.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:38.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:38.010 -07 000000625 INF: FPGA: Recv ZSGSRD 35489
17-03-18 01:27:38.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:38.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:38.020 -07 000000479 INF: FPGA: Recv ZSGSRD 35488
17-03-18 01:27:38.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:38.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:38.030 -07 000000591 INF: FPGA: Recv ZSGSRD 35488
17-03-18 01:27:38.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:38.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:38.040 -07 000000590 INF: FPGA: Recv ZSGSRD 35485
17-03-18 01:27:38.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:38.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:38.050 -07 000000424 INF: FPGA: Recv ZSGSRD 35486
17-03-18 01:27:38.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:38.060 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:38.060 -07 000000474 INF: FPGA: Recv ZPIEZORD 31180
17-03-18 01:27:38.070 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:38.070 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -9.5 V.
17-03-18 01:27:38.070 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35487 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35487 (-167.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35484 (-167.4 uncal um), Max = 35490 (-167.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:27:38.070 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35487, posNoise = 3, negNoise = 3
17-03-18 01:27:38.070 -07 000000610 INF: Z Motor: After move to -0.168286, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:38.070 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:27:38.070 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:38.070 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:38.070 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:38.070 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:38.070 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:27:38.070 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:27:38.070 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:27:38.070 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:38.070 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:27:38.070 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:27:38.070 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:38.070 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:27:38.080 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:27:38.080 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:27:38.080 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:27:38.080 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:27:38.080 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:27:38.090 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:27:38.090 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:27:38.090 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:27:38.090 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36939 150\n [Camera]
17-03-18 01:27:38.290 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:27:38.680 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:27:38.680 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:27:38.680 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:38.680 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:38.680 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:27:38.680 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:27:38.680 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:27:38.680 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:38.680 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:38.680 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:27:38.870 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36939 777
17-03-18 01:27:39.020 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:27:39.060 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 01:27:39.060 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 01:27:39.060 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:39.070 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:39.070 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 01:27:39.070 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:27:39.070 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:39.080 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:27:39.080 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:39.080 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:27:39.210 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:27:39.210 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:27:39.210 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:39.320 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:27:39.320 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:27:39.320 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:39.330 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:39.330 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:39.330 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:27:39.330 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:27:39.400 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:27:39.400 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:27:39.400 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36939 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-18 01:27:39.400 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:27:39.400 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.168299368285806. ------
17-03-18 01:27:39.410 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:39.410 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17495 mm
17-03-18 01:27:39.410 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:27:39.410 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:27:39.410 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38219, sync = True, waitForSettling = False)
17-03-18 01:27:39.410 -07 000000591 INF: Z Motor: Moving to -0.174955 mm, started at -0.168299 mm, distance = -6.66 um
17-03-18 01:27:39.410 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:39.410 -07 000000479 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 01:27:39.420 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:39.420 -07 000000591 INF: FPGA: Xmit ZDACW 38219\n [Z Motor]
17-03-18 01:27:39.420 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:27:39.430 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:39.430 -07 000000591 INF: FPGA: 'ZDACW 38219' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:27:39.430 -07 000000455 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:27:39.440 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:27:39.440 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:27:39.440 -07 000000479 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:39.440 -07 000000479 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:27:39.440 -07 000000479 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:27:39.450 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:39.450 -07 000000467 INF: FPGA: Recv ZDACR 38219
17-03-18 01:27:39.460 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:27:39.460 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:27:39.460 -07 000000591 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:27:39.640 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:27:39.640 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:27:39.730 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:27:39.730 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:27:39.730 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:39.730 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:27:39.730 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:27:39.730 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:39.730 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:39.730 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:39.730 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 01:27:39.740 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:27:39.830 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 01:27:39.830 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 01:27:39.880 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:39.880 -07 000000467 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:27:39.890 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:39.890 -07 000000479 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:39.890 -07 000000479 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:27:39.890 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.838 mm, average velocity = 2.137 mm/sec
17-03-18 01:27:40.750 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.024884,
17-03-18 01:27:40.840 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:40.840 -07 000000629 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:27:40.850 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:40.850 -07 000000479 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:40.870 -07 000000479 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:27:40.870 -07 000000479 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:27:40.870 -07 000000479 INF: Y Motor: Moved to 69.0273 after 1463 ms (table move)
17-03-18 01:27:40.880 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174955 mm (DAC = 38219)
17-03-18 01:27:40.880 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:40.880 -07 000000487 INF: FPGA: Recv ZSGSRD 36527
17-03-18 01:27:40.890 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:40.890 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:40.890 -07 000000591 INF: FPGA: Recv ZSGSRD 36528
17-03-18 01:27:40.900 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:40.900 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:40.900 -07 000000625 INF: FPGA: Recv ZSGSRD 36526
17-03-18 01:27:40.910 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:40.910 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:40.910 -07 000000608 INF: FPGA: Recv ZSGSRD 36524
17-03-18 01:27:40.920 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:40.920 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:40.920 -07 000000502 INF: FPGA: Recv ZSGSRD 36533
17-03-18 01:27:40.930 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:40.930 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:40.930 -07 000000438 INF: FPGA: Recv ZSGSRD 36525
17-03-18 01:27:40.940 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:40.940 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:40.940 -07 000000591 INF: FPGA: Recv ZSGSRD 36516
17-03-18 01:27:40.950 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:40.950 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:40.950 -07 000000629 INF: FPGA: Recv ZSGSRD 36523
17-03-18 01:27:40.960 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:40.960 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:40.960 -07 000000502 INF: FPGA: Recv ZSGSRD 36526
17-03-18 01:27:40.970 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:40.970 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:40.970 -07 000000618 INF: FPGA: Recv ZSGSRD 36519
17-03-18 01:27:40.980 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:40.980 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:40.980 -07 000000591 INF: FPGA: Recv ZPIEZORD 32538
17-03-18 01:27:40.990 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:40.990 -07 000000424 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.832 V. Piezo Error = -8.8 V.
17-03-18 01:27:40.990 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36525 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36526 (-174.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36516 (-174.0 uncal um), Max = 36533 (-174.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:27:40.990 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36525, posNoise = 8, negNoise = 9
17-03-18 01:27:40.990 -07 000000424 INF: Z Motor: After move to -0.174955, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:40.990 -07 000000424 INF: Z Motor: Settle wait time = 1466 ms, measure time = 111 ms (allowed 150 ms), total time = 1577 ms
17-03-18 01:27:40.990 -07 000000424 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:27:41.030 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 01:27:41.030 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:27:41.030 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:41.030 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:41.030 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:41.030 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:41.030 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:27:41.030 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:41.030 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:41.040 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:27:41.040 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:41.040 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:27:41.050 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:27:41.050 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:27:41.050 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:27:41.100 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:27:41.400 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:27:41.400 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:27:41.400 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:27:41.400 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) start.
17-03-18 01:27:41.440 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:27:41.440 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:27:41.440 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 01:27:41.530 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:27:41.530 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:41.530 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:27:41.530 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:27:41.540 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:41.540 -07 000000438 INF: Autofocus start
17-03-18 01:27:41.540 -07 000000438 INF: MeasureProfile start
17-03-18 01:27:41.540 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:41.550 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:27:41.550 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:27:41.550 -07 000000438 INF: MeasureProfile done
17-03-18 01:27:41.550 -07 000000438 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:27:41.550 -07 000000438 INF: Autofocus finished
17-03-18 01:27:41.750 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:27:41.750 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:27:41.750 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.174967700488954. ----------
17-03-18 01:27:41.750 -07 000000610 INF: Cycle	87	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:27:41.760 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36699, sync = True, waitForSettling = True)
17-03-18 01:27:41.760 -07 000000610 INF: Z Motor: Moving to -0.167997 mm, started at -0.174968 mm, distance = 6.97 um
17-03-18 01:27:41.760 -07 000000610 INF: FPGA: Xmit ZDACW 36699\n [Z Motor]
17-03-18 01:27:41.760 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:27:41.770 -07 000000610 INF: FPGA: 'ZDACW 36699' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:41.770 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:41.770 -07 000000479 INF: FPGA: Recv ZDACR 36699
17-03-18 01:27:41.780 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:41.780 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:27:41.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:41.930 -07 000000474 INF: FPGA: Recv ZSGSRD 35444
17-03-18 01:27:41.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:41.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:41.940 -07 000000424 INF: FPGA: Recv ZSGSRD 35443
17-03-18 01:27:41.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:41.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:41.950 -07 000000438 INF: FPGA: Recv ZSGSRD 35438
17-03-18 01:27:41.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:41.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:41.960 -07 000000618 INF: FPGA: Recv ZSGSRD 35443
17-03-18 01:27:41.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:41.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:41.970 -07 000000467 INF: FPGA: Recv ZSGSRD 35443
17-03-18 01:27:41.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:41.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:41.980 -07 000000590 INF: FPGA: Recv ZSGSRD 35441
17-03-18 01:27:41.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:41.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:41.990 -07 000000608 INF: FPGA: Recv ZSGSRD 35443
17-03-18 01:27:42.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:42.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:42.000 -07 000000591 INF: FPGA: Recv ZSGSRD 35442
17-03-18 01:27:42.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:42.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:42.010 -07 000000629 INF: FPGA: Recv ZSGSRD 35449
17-03-18 01:27:42.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:42.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:42.020 -07 000000474 INF: FPGA: Recv ZSGSRD 35442
17-03-18 01:27:42.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:42.030 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:42.030 -07 000000455 INF: FPGA: Recv ZPIEZORD 31130
17-03-18 01:27:42.040 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:42.040 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.5 V.
17-03-18 01:27:42.040 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35443 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35443 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35438 (-167.1 uncal um), Max = 35449 (-167.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:27:42.040 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35443, posNoise = 6, negNoise = 5
17-03-18 01:27:42.040 -07 000000610 INF: Z Motor: After move to -0.167997, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:42.040 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:27:42.040 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:42.040 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:42.040 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:42.040 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:42.040 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:27:42.040 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:27:42.040 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:27:42.040 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:42.040 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:27:42.040 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:27:42.040 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:42.040 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:27:42.050 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:27:42.050 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:27:42.050 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:27:42.050 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:27:42.060 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:27:42.060 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:27:42.060 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:27:42.060 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:27:42.060 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36875 150\n [Camera]
17-03-18 01:27:42.260 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:27:42.260 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:27:42.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:27:42.650 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:27:42.650 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:27:42.650 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:42.650 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:27:42.650 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:27:42.650 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:42.650 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:42.650 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:27:42.650 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:42.650 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2606974736, 0x0, 391868352) start.
17-03-18 01:27:42.840 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36875 775
17-03-18 01:27:42.990 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:27:43.040 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2606974736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 01:27:43.040 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:27:43.040 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:43.040 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:43.040 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:27:43.040 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:27:43.040 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:27:43.050 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:43.050 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:43.060 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:27:43.180 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-18 01:27:43.180 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-18 01:27:43.180 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:43.300 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:27:43.300 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:27:43.300 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:43.300 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:43.300 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:27:43.300 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:43.300 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:27:43.370 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:27:43.370 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:27:43.370 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36875 150' command took 2 ms to send, 1308 ms to get response, and 1313 ms overall
17-03-18 01:27:43.380 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:27:43.380 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168016702951569. ------
17-03-18 01:27:43.380 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:43.380 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17441 mm
17-03-18 01:27:43.380 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:27:43.380 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:27:43.380 -07 000000608 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 01:27:43.380 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38100, sync = True, waitForSettling = False)
17-03-18 01:27:43.380 -07 000000618 INF: Z Motor: Moving to -0.174411 mm, started at -0.168017 mm, distance = -6.39 um
17-03-18 01:27:43.380 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:43.390 -07 000000618 INF: FPGA: Xmit ZDACW 38100\n [Z Motor]
17-03-18 01:27:43.390 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:27:43.390 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:27:43.400 -07 000000618 INF: FPGA: 'ZDACW 38100' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:27:43.400 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:43.400 -07 000000424 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:27:43.410 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:27:43.410 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:27:43.410 -07 000000608 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:43.410 -07 000000608 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:27:43.410 -07 000000608 INF: Y Motor: Moving 1352 steps-31
17-03-18 01:27:43.420 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:43.420 -07 000000424 INF: FPGA: Recv ZDACR 38100
17-03-18 01:27:43.430 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:27:43.430 -07 000000618 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 01:27:43.430 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:27:43.610 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:27:43.610 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:27:43.700 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:27:43.700 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:27:43.700 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:43.700 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:27:43.700 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:27:43.700 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:43.710 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:43.710 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 01:27:43.710 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:43.720 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 01:27:43.800 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:27:43.800 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:27:43.850 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:43.850 -07 000000455 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:27:43.860 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:43.860 -07 000000608 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:43.860 -07 000000608 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:27:43.860 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.845 mm, average velocity = 2.135 mm/sec
17-03-18 01:27:44.810 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:44.810 -07 000000487 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:27:44.820 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:44.820 -07 000000608 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:44.840 -07 000000608 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:27:44.840 -07 000000608 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:27:44.840 -07 000000608 INF: Y Motor: Moved to 69.8633 after 1460 ms (table move)
17-03-18 01:27:44.850 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174411 mm (DAC = 38100)
17-03-18 01:27:44.850 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:44.850 -07 000000608 INF: FPGA: Recv ZSGSRD 36430
17-03-18 01:27:44.860 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:44.860 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:44.860 -07 000000474 INF: FPGA: Recv ZSGSRD 36441
17-03-18 01:27:44.870 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:44.870 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:44.870 -07 000000625 INF: FPGA: Recv ZSGSRD 36442
17-03-18 01:27:44.880 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:44.880 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:44.880 -07 000000590 INF: FPGA: Recv ZSGSRD 36442
17-03-18 01:27:44.890 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:44.890 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:44.890 -07 000000487 INF: FPGA: Recv ZSGSRD 36429
17-03-18 01:27:44.900 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:44.900 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:44.900 -07 000000629 INF: FPGA: Recv ZSGSRD 36438
17-03-18 01:27:44.910 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:44.910 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:44.910 -07 000000455 INF: FPGA: Recv ZSGSRD 36433
17-03-18 01:27:44.920 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:44.920 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:44.920 -07 000000502 INF: FPGA: Recv ZSGSRD 36443
17-03-18 01:27:44.930 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:44.930 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:44.930 -07 000000487 INF: FPGA: Recv ZSGSRD 36442
17-03-18 01:27:44.940 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:44.940 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:44.940 -07 000000424 INF: FPGA: Recv ZSGSRD 36437
17-03-18 01:27:44.950 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:44.950 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:44.950 -07 000000455 INF: FPGA: Recv ZPIEZORD 32467
17-03-18 01:27:44.960 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:44.960 -07 000000479 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.814 V. Piezo Error = -8.8 V.
17-03-18 01:27:44.960 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36438 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36440 (-173.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36429 (-173.5 uncal um), Max = 36443 (-173.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:27:44.960 -07 000000479 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36438, posNoise = 5, negNoise = 9
17-03-18 01:27:44.960 -07 000000479 INF: Z Motor: After move to -0.174411, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:44.960 -07 000000479 INF: Z Motor: Settle wait time = 1465 ms, measure time = 108 ms (allowed 150 ms), total time = 1573 ms
17-03-18 01:27:44.960 -07 000000479 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:27:45.010 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 01:27:45.010 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:27:45.010 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:45.010 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:45.010 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:45.010 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:45.010 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:27:45.010 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:45.020 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:45.020 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:27:45.020 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:45.020 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:27:45.030 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:27:45.030 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:27:45.030 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:27:45.080 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:27:45.380 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:27:45.380 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:27:45.380 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:27:45.380 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) start.
17-03-18 01:27:45.420 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:27:45.420 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 01:27:45.420 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 01:27:45.510 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:27:45.510 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:45.510 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:27:45.510 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:27:45.520 -07 000000474 INF: Autofocus start
17-03-18 01:27:45.520 -07 000000474 INF: MeasureProfile start
17-03-18 01:27:45.520 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:45.520 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:45.530 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:27:45.530 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:27:45.530 -07 000000474 INF: MeasureProfile done
17-03-18 01:27:45.530 -07 000000474 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:27:45.530 -07 000000474 INF: Autofocus finished
17-03-18 01:27:45.730 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:27:45.730 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:27:45.730 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.174408794032621. ----------
17-03-18 01:27:45.730 -07 000000610 INF: Cycle	87	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:27:45.740 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36633, sync = True, waitForSettling = True)
17-03-18 01:27:45.740 -07 000000610 INF: Z Motor: Moving to -0.167695 mm, started at -0.174409 mm, distance = 6.71 um
17-03-18 01:27:45.740 -07 000000610 INF: FPGA: Xmit ZDACW 36633\n [Z Motor]
17-03-18 01:27:45.740 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 01:27:45.750 -07 000000610 INF: FPGA: 'ZDACW 36633' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:27:45.750 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:45.750 -07 000000447 INF: FPGA: Recv ZDACR 36633
17-03-18 01:27:45.760 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:45.760 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:27:45.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:45.910 -07 000000590 INF: FPGA: Recv ZSGSRD 35393
17-03-18 01:27:45.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:45.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:45.920 -07 000000447 INF: FPGA: Recv ZSGSRD 35399
17-03-18 01:27:45.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:45.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:45.930 -07 000000618 INF: FPGA: Recv ZSGSRD 35398
17-03-18 01:27:45.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:45.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:45.940 -07 000000467 INF: FPGA: Recv ZSGSRD 35393
17-03-18 01:27:45.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:45.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:45.950 -07 000000487 INF: FPGA: Recv ZSGSRD 35392
17-03-18 01:27:45.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:45.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:45.960 -07 000000461 INF: FPGA: Recv ZSGSRD 35392
17-03-18 01:27:45.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:45.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:45.970 -07 000000629 INF: FPGA: Recv ZSGSRD 35397
17-03-18 01:27:45.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:45.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:45.980 -07 000000467 INF: FPGA: Recv ZSGSRD 35393
17-03-18 01:27:45.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:45.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:45.990 -07 000000487 INF: FPGA: Recv ZSGSRD 35391
17-03-18 01:27:46.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:46.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:46.000 -07 000000474 INF: FPGA: Recv ZSGSRD 35396
17-03-18 01:27:46.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:46.010 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:46.010 -07 000000438 INF: FPGA: Recv ZPIEZORD 31069
17-03-18 01:27:46.020 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:46.020 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -9.5 V.
17-03-18 01:27:46.020 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35394 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35393 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35391 (-166.8 uncal um), Max = 35399 (-166.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:27:46.020 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35394, posNoise = 5, negNoise = 3
17-03-18 01:27:46.020 -07 000000610 INF: Z Motor: After move to -0.167695, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:46.020 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:27:46.020 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:46.020 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:46.020 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:27:46.020 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:46.020 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:46.020 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:27:46.020 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:27:46.020 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:46.020 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:27:46.020 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:46.020 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:27:46.020 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:27:46.030 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:46.030 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:27:46.030 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:27:46.030 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:27:46.040 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:27:46.040 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:27:46.040 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:27:46.040 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:27:46.040 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36810 150\n [Camera]
17-03-18 01:27:46.110 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.038479,
17-03-18 01:27:46.240 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:27:46.630 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:27:46.630 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:27:46.630 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:46.630 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:46.630 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:27:46.630 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:27:46.630 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:27:46.630 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:46.630 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:46.630 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:27:46.820 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36810 775
17-03-18 01:27:46.970 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 01:27:47.020 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:27:47.020 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:27:47.020 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:47.020 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:27:47.020 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:27:47.020 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:47.030 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:47.030 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:27:47.030 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:47.030 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:27:47.160 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:27:47.160 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:27:47.160 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:47.270 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:27:47.270 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:27:47.270 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:27:47.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:27:47.270 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:47.280 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:47.280 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:27:47.280 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:47.280 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:27:47.350 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:27:47.350 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:27:47.350 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36810 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-18 01:27:47.350 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:27:47.350 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.167701916556622. ------
17-03-18 01:27:47.360 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17371 mm
17-03-18 01:27:47.360 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:27:47.360 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:47.360 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:27:47.360 -07 000000455 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 01:27:47.360 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 37947, sync = True, waitForSettling = False)
17-03-18 01:27:47.360 -07 000000590 INF: Z Motor: Moving to -0.173710 mm, started at -0.167702 mm, distance = -6.01 um
17-03-18 01:27:47.360 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:47.370 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:27:47.370 -07 000000590 INF: FPGA: Xmit ZDACW 37947\n [Z Motor]
17-03-18 01:27:47.370 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:27:47.380 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:47.380 -07 000000590 INF: FPGA: 'ZDACW 37947' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:27:47.380 -07 000000438 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:27:47.390 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:27:47.390 -07 000000455 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:27:47.390 -07 000000455 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:47.390 -07 000000455 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:27:47.390 -07 000000455 INF: Y Motor: Moving 1343 steps-19
17-03-18 01:27:47.400 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:47.400 -07 000000591 INF: FPGA: Recv ZDACR 37947
17-03-18 01:27:47.410 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 01:27:47.410 -07 000000590 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 01:27:47.410 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:27:47.590 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:27:47.590 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:27:47.670 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:27:47.670 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:27:47.670 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:47.670 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:27:47.670 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:27:47.670 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:47.670 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:47.680 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:47.680 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-18 01:27:47.680 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:27:47.780 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 01:27:47.780 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:27:47.830 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:47.830 -07 000000447 INF: FPGA: Recv YRDPOS 144769
17-03-18 01:27:47.840 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:27:47.840 -07 000000455 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:47.840 -07 000000455 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:27:47.840 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.109 mm/sec
17-03-18 01:27:48.790 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:48.790 -07 000000467 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:27:48.800 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:48.800 -07 000000455 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:48.820 -07 000000455 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:27:48.820 -07 000000455 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:27:48.820 -07 000000455 INF: Y Motor: Moved to 70.6885 after 1462 ms (table move)
17-03-18 01:27:48.830 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173710 mm (DAC = 37947)
17-03-18 01:27:48.830 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:48.830 -07 000000438 INF: FPGA: Recv ZSGSRD 36332
17-03-18 01:27:48.840 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:48.840 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:48.840 -07 000000474 INF: FPGA: Recv ZSGSRD 36330
17-03-18 01:27:48.850 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:48.850 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:48.850 -07 000000625 INF: FPGA: Recv ZSGSRD 36330
17-03-18 01:27:48.860 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:48.860 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:48.860 -07 000000455 INF: FPGA: Recv ZSGSRD 36333
17-03-18 01:27:48.870 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:48.870 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:48.870 -07 000000608 INF: FPGA: Recv ZSGSRD 36331
17-03-18 01:27:48.880 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:48.880 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:48.880 -07 000000590 INF: FPGA: Recv ZSGSRD 36340
17-03-18 01:27:48.890 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:48.890 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:48.890 -07 000000474 INF: FPGA: Recv ZSGSRD 36326
17-03-18 01:27:48.900 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:48.900 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:48.900 -07 000000455 INF: FPGA: Recv ZSGSRD 36326
17-03-18 01:27:48.910 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:48.910 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:48.910 -07 000000467 INF: FPGA: Recv ZSGSRD 36337
17-03-18 01:27:48.920 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:48.920 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:48.920 -07 000000618 INF: FPGA: Recv ZSGSRD 36329
17-03-18 01:27:48.930 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:48.930 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:48.930 -07 000000629 INF: FPGA: Recv ZPIEZORD 32371
17-03-18 01:27:48.940 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:48.940 -07 000000461 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.790 V. Piezo Error = -8.8 V.
17-03-18 01:27:48.940 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36331 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36330 (-172.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36326 (-172.8 uncal um), Max = 36340 (-172.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:27:48.940 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36331, posNoise = 9, negNoise = 5
17-03-18 01:27:48.940 -07 000000461 INF: Z Motor: After move to -0.173710, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:48.940 -07 000000461 INF: Z Motor: Settle wait time = 1467 ms, measure time = 108 ms (allowed 150 ms), total time = 1575 ms
17-03-18 01:27:48.940 -07 000000461 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:27:48.990 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 01:27:48.990 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:27:48.990 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:48.990 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:48.990 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:48.990 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:48.990 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:27:48.990 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:48.990 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:48.990 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:27:49.000 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:27:49.000 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:27:49.000 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:27:49.000 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:27:49.010 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:27:49.050 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:27:49.350 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:27:49.350 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:27:49.350 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:27:49.350 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 01:27:49.390 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:27:49.390 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 01:27:49.390 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:27:49.470 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:27:49.470 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:49.470 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:27:49.470 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:27:49.490 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:49.490 -07 000000590 INF: Autofocus start
17-03-18 01:27:49.490 -07 000000590 INF: MeasureProfile start
17-03-18 01:27:49.490 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:49.500 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:27:49.500 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:27:49.500 -07 000000590 INF: MeasureProfile done
17-03-18 01:27:49.500 -07 000000590 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:27:49.500 -07 000000590 INF: Autofocus finished
17-03-18 01:27:49.700 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:27:49.700 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:27:49.710 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.173721403333452. ----------
17-03-18 01:27:49.710 -07 000000610 INF: Cycle	87	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:27:49.710 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36462, sync = True, waitForSettling = True)
17-03-18 01:27:49.710 -07 000000610 INF: Z Motor: Moving to -0.166912 mm, started at -0.173721 mm, distance = 6.81 um
17-03-18 01:27:49.710 -07 000000610 INF: FPGA: Xmit ZDACW 36462\n [Z Motor]
17-03-18 01:27:49.710 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 01:27:49.720 -07 000000610 INF: FPGA: 'ZDACW 36462' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:49.720 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:49.720 -07 000000424 INF: FPGA: Recv ZDACR 36462
17-03-18 01:27:49.730 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:49.730 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:27:49.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:49.880 -07 000000438 INF: FPGA: Recv ZSGSRD 35268
17-03-18 01:27:49.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:49.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:49.890 -07 000000461 INF: FPGA: Recv ZSGSRD 35282
17-03-18 01:27:49.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:49.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:49.900 -07 000000629 INF: FPGA: Recv ZSGSRD 35272
17-03-18 01:27:49.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:49.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:49.910 -07 000000467 INF: FPGA: Recv ZSGSRD 35268
17-03-18 01:27:49.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:49.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:49.920 -07 000000455 INF: FPGA: Recv ZSGSRD 35271
17-03-18 01:27:49.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:49.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:49.930 -07 000000590 INF: FPGA: Recv ZSGSRD 35269
17-03-18 01:27:49.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:49.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:49.940 -07 000000625 INF: FPGA: Recv ZSGSRD 35274
17-03-18 01:27:49.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:49.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:49.950 -07 000000467 INF: FPGA: Recv ZSGSRD 35268
17-03-18 01:27:49.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:49.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:49.960 -07 000000461 INF: FPGA: Recv ZSGSRD 35276
17-03-18 01:27:49.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:49.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:49.970 -07 000000618 INF: FPGA: Recv ZSGSRD 35274
17-03-18 01:27:49.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:49.980 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:49.980 -07 000000608 INF: FPGA: Recv ZPIEZORD 30948
17-03-18 01:27:49.990 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:49.990 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.564 V. Piezo Error = -9.5 V.
17-03-18 01:27:49.990 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35272 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35272 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35268 (-166.0 uncal um), Max = 35282 (-166.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:27:49.990 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35272, posNoise = 10, negNoise = 4
17-03-18 01:27:49.990 -07 000000610 INF: Z Motor: After move to -0.166912, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:49.990 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:27:49.990 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:49.990 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:49.990 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:49.990 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:49.990 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:27:49.990 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:27:49.990 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:27:49.990 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:49.990 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:27:49.990 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:27:49.990 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:49.990 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:27:50.000 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:27:50.000 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:27:50.000 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:27:50.000 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:27:50.010 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:27:50.010 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:27:50.010 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:27:50.010 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:27:50.020 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36638 150\n [Camera]
17-03-18 01:27:50.220 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:27:50.610 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:27:50.610 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:27:50.610 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:50.610 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:27:50.610 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:27:50.610 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:50.610 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:50.610 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:50.610 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2617245512, 0x0, 391868352) start.
17-03-18 01:27:50.610 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:27:50.800 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36638 775
17-03-18 01:27:50.950 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:27:51.000 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 01:27:51.000 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:27:51.000 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:51.000 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2617245512, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 01:27:51.000 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:27:51.000 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:51.000 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:51.000 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:51.000 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:27:51.010 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:27:51.140 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:27:51.140 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:27:51.140 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:51.250 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:27:51.250 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:27:51.250 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:51.260 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:51.260 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:27:51.260 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:51.260 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:27:51.330 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:27:51.330 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:27:51.330 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36638 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:27:51.330 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:27:51.330 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.166918162675327. ------
17-03-18 01:27:51.330 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:51.330 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17358 mm
17-03-18 01:27:51.330 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:27:51.340 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:51.340 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:27:51.340 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:27:51.340 -07 000000424 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 01:27:51.340 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:27:51.340 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 37918, sync = True, waitForSettling = False)
17-03-18 01:27:51.340 -07 000000474 INF: Z Motor: Moving to -0.173577 mm, started at -0.166918 mm, distance = -6.66 um
17-03-18 01:27:51.350 -07 000000474 INF: FPGA: Xmit ZDACW 37918\n [Z Motor]
17-03-18 01:27:51.350 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:27:51.360 -07 000000474 INF: FPGA: 'ZDACW 37918' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:27:51.360 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:51.360 -07 000000487 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:27:51.370 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 01:27:51.370 -07 000000424 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:51.370 -07 000000424 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:27:51.370 -07 000000424 INF: Y Motor: Moving 1351 steps-30
17-03-18 01:27:51.370 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:51.370 -07 000000591 INF: FPGA: Recv ZDACR 37918
17-03-18 01:27:51.380 -07 000000474 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:27:51.380 -07 000000474 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 01:27:51.380 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:27:51.540 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:27:51.540 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:27:51.570 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.012614,
17-03-18 01:27:51.660 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:27:51.660 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:27:51.660 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:51.660 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:27:51.660 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:27:51.660 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:51.660 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:51.660 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 01:27:51.660 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:51.670 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:27:51.750 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 01:27:51.750 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 01:27:51.800 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:51.800 -07 000000447 INF: FPGA: Recv YRDPOS 146470
17-03-18 01:27:51.810 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:51.810 -07 000000424 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:51.810 -07 000000424 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:27:51.810 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.187 mm/sec
17-03-18 01:27:52.260 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:27:52.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:27:52.760 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:52.760 -07 000000618 INF: FPGA: Recv YRDPOS 146470
17-03-18 01:27:52.770 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:52.770 -07 000000424 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:52.790 -07 000000424 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:27:52.790 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:27:52.790 -07 000000424 INF: Y Motor: Moved to 71.5186 after 1455 ms (table move)
17-03-18 01:27:52.800 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173577 mm (DAC = 37918)
17-03-18 01:27:52.800 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:52.800 -07 000000625 INF: FPGA: Recv ZSGSRD 36314
17-03-18 01:27:52.810 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:27:52.810 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:52.810 -07 000000629 INF: FPGA: Recv ZSGSRD 36308
17-03-18 01:27:52.820 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:52.820 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:52.820 -07 000000474 INF: FPGA: Recv ZSGSRD 36310
17-03-18 01:27:52.830 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:52.830 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:52.830 -07 000000461 INF: FPGA: Recv ZSGSRD 36314
17-03-18 01:27:52.840 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:52.840 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:52.840 -07 000000447 INF: FPGA: Recv ZSGSRD 36311
17-03-18 01:27:52.850 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:52.850 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:52.850 -07 000000438 INF: FPGA: Recv ZSGSRD 36313
17-03-18 01:27:52.860 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:52.860 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:52.860 -07 000000474 INF: FPGA: Recv ZSGSRD 36303
17-03-18 01:27:52.870 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:52.870 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:52.870 -07 000000461 INF: FPGA: Recv ZSGSRD 36305
17-03-18 01:27:52.880 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:52.880 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:52.880 -07 000000479 INF: FPGA: Recv ZSGSRD 36309
17-03-18 01:27:52.890 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:52.890 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:52.890 -07 000000479 INF: FPGA: Recv ZSGSRD 36310
17-03-18 01:27:52.900 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:52.900 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:52.900 -07 000000424 INF: FPGA: Recv ZPIEZORD 32337
17-03-18 01:27:52.910 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:52.910 -07 000000455 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.786 V. Piezo Error = -8.8 V.
17-03-18 01:27:52.910 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36310 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36310 (-172.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36303 (-172.7 uncal um), Max = 36314 (-172.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:27:52.910 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36310, posNoise = 4, negNoise = 7
17-03-18 01:27:52.910 -07 000000455 INF: Z Motor: After move to -0.173577, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:52.910 -07 000000455 INF: Z Motor: Settle wait time = 1458 ms, measure time = 109 ms (allowed 150 ms), total time = 1567 ms
17-03-18 01:27:52.910 -07 000000455 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:27:52.960 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 01:27:52.960 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:27:52.960 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:52.960 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:52.960 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:52.960 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:52.960 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:27:52.960 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:52.970 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:52.970 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:27:52.970 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:52.970 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:27:52.970 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:27:52.970 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:27:52.980 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:27:53.030 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:27:53.320 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:27:53.330 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:27:53.330 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:27:53.330 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) start.
17-03-18 01:27:53.360 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:27:53.370 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:27:53.370 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 387 ms overall
17-03-18 01:27:53.440 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:27:53.440 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:53.440 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:27:53.440 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:27:53.470 -07 000000618 INF: Autofocus start
17-03-18 01:27:53.470 -07 000000618 INF: MeasureProfile start
17-03-18 01:27:53.470 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:53.470 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:53.480 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:27:53.480 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:27:53.480 -07 000000618 INF: MeasureProfile done
17-03-18 01:27:53.480 -07 000000618 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:27:53.480 -07 000000618 INF: Autofocus finished
17-03-18 01:27:53.680 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:27:53.680 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:27:53.680 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173586494878475. ----------
17-03-18 01:27:53.690 -07 000000610 INF: Cycle	87	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:27:53.690 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36415, sync = True, waitForSettling = True)
17-03-18 01:27:53.690 -07 000000610 INF: Z Motor: Moving to -0.166697 mm, started at -0.173586 mm, distance = 6.89 um
17-03-18 01:27:53.690 -07 000000610 INF: FPGA: Xmit ZDACW 36415\n [Z Motor]
17-03-18 01:27:53.690 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:27:53.700 -07 000000610 INF: FPGA: 'ZDACW 36415' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:53.700 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:53.700 -07 000000479 INF: FPGA: Recv ZDACR 36415
17-03-18 01:27:53.710 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:53.710 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:27:53.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:53.860 -07 000000438 INF: FPGA: Recv ZSGSRD 35239
17-03-18 01:27:53.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:53.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:53.870 -07 000000625 INF: FPGA: Recv ZSGSRD 35233
17-03-18 01:27:53.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:53.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:53.880 -07 000000455 INF: FPGA: Recv ZSGSRD 35240
17-03-18 01:27:53.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:53.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:53.890 -07 000000479 INF: FPGA: Recv ZSGSRD 35237
17-03-18 01:27:53.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:53.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:53.900 -07 000000447 INF: FPGA: Recv ZSGSRD 35239
17-03-18 01:27:53.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:53.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:53.910 -07 000000625 INF: FPGA: Recv ZSGSRD 35245
17-03-18 01:27:53.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:53.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:53.920 -07 000000455 INF: FPGA: Recv ZSGSRD 35236
17-03-18 01:27:53.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:53.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:53.930 -07 000000618 INF: FPGA: Recv ZSGSRD 35250
17-03-18 01:27:53.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:53.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:53.940 -07 000000608 INF: FPGA: Recv ZSGSRD 35239
17-03-18 01:27:53.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:53.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:53.950 -07 000000590 INF: FPGA: Recv ZSGSRD 35240
17-03-18 01:27:53.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:53.960 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:53.960 -07 000000487 INF: FPGA: Recv ZPIEZORD 30931
17-03-18 01:27:53.970 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:53.970 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.5 V.
17-03-18 01:27:53.970 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35240 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35239 (-165.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35233 (-165.8 uncal um), Max = 35250 (-165.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:27:53.970 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35240, posNoise = 10, negNoise = 7
17-03-18 01:27:53.970 -07 000000610 INF: Z Motor: After move to -0.166697, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:53.970 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:27:53.970 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:53.970 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:53.970 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:53.970 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:53.970 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:27:53.970 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:53.970 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:27:53.970 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:27:53.970 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:27:53.970 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:27:53.970 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:27:53.970 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:27:53.970 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:27:53.970 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:27:53.970 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:53.970 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:27:53.990 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:27:53.990 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:27:53.990 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:27:53.990 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:27:53.990 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36592 150\n [Camera]
17-03-18 01:27:54.190 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:27:54.580 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:27:54.580 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:27:54.580 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:54.580 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:54.580 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:27:54.580 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:27:54.580 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:27:54.580 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:54.590 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:54.590 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:27:54.770 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36592 775
17-03-18 01:27:54.920 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:27:54.980 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:27:54.980 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:27:54.980 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:54.980 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:54.980 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:27:54.990 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:27:54.990 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:27:54.990 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:54.990 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:55.000 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:27:55.110 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:27:55.110 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:27:55.110 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:55.220 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:27:55.220 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:27:55.220 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:55.230 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:55.230 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:27:55.230 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:55.230 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:27:55.300 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:27:55.300 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:27:55.300 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36592 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-18 01:27:55.300 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:27:55.300 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.166712587886791. ------
17-03-18 01:27:55.310 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17311 mm
17-03-18 01:27:55.310 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:27:55.310 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:55.310 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:27:55.310 -07 000000591 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 01:27:55.310 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 37817, sync = True, waitForSettling = False)
17-03-18 01:27:55.310 -07 000000625 INF: Z Motor: Moving to -0.173115 mm, started at -0.166713 mm, distance = -6.40 um
17-03-18 01:27:55.310 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:55.320 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:27:55.320 -07 000000625 INF: FPGA: Xmit ZDACW 37817\n [Z Motor]
17-03-18 01:27:55.320 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:27:55.330 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:55.330 -07 000000625 INF: FPGA: 'ZDACW 37817' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:27:55.330 -07 000000487 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:27:55.340 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:27:55.340 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:27:55.340 -07 000000591 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:55.340 -07 000000591 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:27:55.340 -07 000000591 INF: Y Motor: Moving 1350 steps-29
17-03-18 01:27:55.350 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:55.350 -07 000000447 INF: FPGA: Recv ZDACR 37817
17-03-18 01:27:55.360 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:27:55.360 -07 000000625 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 01:27:55.360 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:27:55.540 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:27:55.540 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:27:55.630 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:27:55.630 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:27:55.630 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:55.630 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:27:55.630 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:27:55.630 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:55.630 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:55.630 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:55.630 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 01:27:55.640 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 01:27:55.730 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 01:27:55.730 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 01:27:55.780 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:55.780 -07 000000618 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:27:55.790 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:55.790 -07 000000591 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:55.790 -07 000000591 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 01:27:55.790 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-18 01:27:56.740 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:56.740 -07 000000467 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:27:56.750 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:56.750 -07 000000591 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:56.770 -07 000000591 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:27:56.770 -07 000000591 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:27:56.770 -07 000000591 INF: Y Motor: Moved to 72.3496 after 1462 ms (table move)
17-03-18 01:27:56.780 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173115 mm (DAC = 37817)
17-03-18 01:27:56.780 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:56.780 -07 000000447 INF: FPGA: Recv ZSGSRD 36237
17-03-18 01:27:56.790 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:56.790 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:56.790 -07 000000590 INF: FPGA: Recv ZSGSRD 36236
17-03-18 01:27:56.800 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:56.800 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:56.800 -07 000000438 INF: FPGA: Recv ZSGSRD 36241
17-03-18 01:27:56.810 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:56.810 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:56.810 -07 000000487 INF: FPGA: Recv ZSGSRD 36243
17-03-18 01:27:56.820 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:56.820 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:56.820 -07 000000447 INF: FPGA: Recv ZSGSRD 36236
17-03-18 01:27:56.830 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:56.830 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:56.830 -07 000000590 INF: FPGA: Recv ZSGSRD 36239
17-03-18 01:27:56.840 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:56.840 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:56.840 -07 000000502 INF: FPGA: Recv ZSGSRD 36242
17-03-18 01:27:56.850 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:56.850 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:56.850 -07 000000629 INF: FPGA: Recv ZSGSRD 36237
17-03-18 01:27:56.860 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:56.860 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:56.860 -07 000000467 INF: FPGA: Recv ZSGSRD 36233
17-03-18 01:27:56.870 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:56.870 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:56.870 -07 000000461 INF: FPGA: Recv ZSGSRD 36240
17-03-18 01:27:56.880 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:56.880 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:56.880 -07 000000502 INF: FPGA: Recv ZPIEZORD 32210
17-03-18 01:27:56.890 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:56.890 -07 000000479 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.771 V. Piezo Error = -8.9 V.
17-03-18 01:27:56.890 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36238 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36238 (-172.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36233 (-172.2 uncal um), Max = 36243 (-172.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:27:56.890 -07 000000479 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36238, posNoise = 5, negNoise = 5
17-03-18 01:27:56.890 -07 000000479 INF: Z Motor: After move to -0.173115, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:56.890 -07 000000479 INF: Z Motor: Settle wait time = 1465 ms, measure time = 110 ms (allowed 150 ms), total time = 1575 ms
17-03-18 01:27:56.890 -07 000000479 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:27:56.930 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 01:27:56.930 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:27:56.930 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.018051,
17-03-18 01:27:56.930 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:56.930 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:56.930 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:56.930 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:27:56.930 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:56.930 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:56.930 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:56.930 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:27:56.940 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:27:56.940 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:27:56.940 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:27:56.940 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:27:56.970 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:27:57.010 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:27:57.260 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:27:57.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:27:57.310 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:27:57.310 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:27:57.310 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:27:57.310 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 01:27:57.350 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:27:57.350 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:27:57.350 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 401 ms overall
17-03-18 01:27:57.430 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:27:57.430 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:57.430 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:27:57.430 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:27:57.450 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:57.450 -07 000000447 INF: Autofocus start
17-03-18 01:27:57.450 -07 000000447 INF: MeasureProfile start
17-03-18 01:27:57.450 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:57.460 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:27:57.460 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:27:57.460 -07 000000447 INF: MeasureProfile done
17-03-18 01:27:57.460 -07 000000447 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:27:57.460 -07 000000447 INF: Autofocus finished
17-03-18 01:27:57.660 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:27:57.660 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:27:57.660 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173123951604269. ----------
17-03-18 01:27:57.660 -07 000000610 INF: Cycle	87	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:27:57.670 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36314, sync = True, waitForSettling = True)
17-03-18 01:27:57.670 -07 000000610 INF: Z Motor: Moving to -0.166235 mm, started at -0.173124 mm, distance = 6.89 um
17-03-18 01:27:57.670 -07 000000610 INF: FPGA: Xmit ZDACW 36314\n [Z Motor]
17-03-18 01:27:57.670 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:27:57.680 -07 000000610 INF: FPGA: 'ZDACW 36314' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:57.680 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:57.680 -07 000000608 INF: FPGA: Recv ZDACR 36314
17-03-18 01:27:57.690 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:57.690 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:27:57.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:57.840 -07 000000629 INF: FPGA: Recv ZSGSRD 35172
17-03-18 01:27:57.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:27:57.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:57.850 -07 000000479 INF: FPGA: Recv ZSGSRD 35170
17-03-18 01:27:57.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:57.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:57.860 -07 000000467 INF: FPGA: Recv ZSGSRD 35166
17-03-18 01:27:57.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:57.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:57.870 -07 000000447 INF: FPGA: Recv ZSGSRD 35164
17-03-18 01:27:57.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:57.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:57.880 -07 000000591 INF: FPGA: Recv ZSGSRD 35170
17-03-18 01:27:57.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:57.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:57.890 -07 000000474 INF: FPGA: Recv ZSGSRD 35170
17-03-18 01:27:57.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:57.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:57.900 -07 000000618 INF: FPGA: Recv ZSGSRD 35168
17-03-18 01:27:57.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:57.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:57.910 -07 000000438 INF: FPGA: Recv ZSGSRD 35165
17-03-18 01:27:57.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:57.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:57.920 -07 000000590 INF: FPGA: Recv ZSGSRD 35170
17-03-18 01:27:57.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:57.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:27:57.930 -07 000000479 INF: FPGA: Recv ZSGSRD 35170
17-03-18 01:27:57.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:57.940 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:27:57.940 -07 000000455 INF: FPGA: Recv ZPIEZORD 30811
17-03-18 01:27:57.950 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:27:57.950 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.541 V. Piezo Error = -9.6 V.
17-03-18 01:27:57.950 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35168 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35170 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35164 (-165.4 uncal um), Max = 35172 (-165.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:27:57.950 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35168, posNoise = 4, negNoise = 4
17-03-18 01:27:57.950 -07 000000610 INF: Z Motor: After move to -0.166235, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:27:57.950 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:27:57.950 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:27:57.950 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:27:57.950 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:27:57.950 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:27:57.950 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:27:57.950 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:27:57.950 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:27:57.950 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:27:57.950 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:27:57.950 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:27:57.950 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:27:57.950 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:27:57.950 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:27:57.960 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:27:57.960 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:27:57.960 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:27:57.960 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:27:57.960 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:27:57.970 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:27:57.970 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:27:57.970 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36490 150\n [Camera]
17-03-18 01:27:58.170 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:27:58.560 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:27:58.560 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:27:58.560 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:58.560 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:27:58.560 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:27:58.560 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:58.560 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:58.560 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:27:58.560 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:58.560 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2617245512, 0x0, 391868352) start.
17-03-18 01:27:58.750 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36490 775
17-03-18 01:27:58.900 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:27:58.960 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2617245512, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:27:58.960 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:27:58.960 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:58.970 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:27:58.970 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:27:58.970 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:58.970 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:58.970 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:27:58.970 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:27:58.980 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:27:59.090 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:27:59.090 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:27:59.090 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:27:59.200 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:27:59.200 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:27:59.200 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:27:59.210 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:27:59.210 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:27:59.210 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:27:59.210 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:27:59.280 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:27:59.290 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:27:59.290 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36490 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 01:27:59.290 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:27:59.290 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.166250044612584. ------
17-03-18 01:27:59.290 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:27:59.290 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17276 mm
17-03-18 01:27:59.290 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:27:59.290 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:27:59.290 -07 000000487 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 01:27:59.290 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37739, sync = True, waitForSettling = False)
17-03-18 01:27:59.290 -07 000000467 INF: Z Motor: Moving to -0.172758 mm, started at -0.166250 mm, distance = -6.51 um
17-03-18 01:27:59.290 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:27:59.300 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:27:59.300 -07 000000467 INF: FPGA: Xmit ZDACW 37739\n [Z Motor]
17-03-18 01:27:59.300 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 01:27:59.310 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:59.310 -07 000000467 INF: FPGA: 'ZDACW 37739' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:27:59.310 -07 000000447 INF: FPGA: Recv YRDPOS 148173
17-03-18 01:27:59.320 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:27:59.320 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 01:27:59.320 -07 000000487 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:59.320 -07 000000487 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:27:59.320 -07 000000487 INF: Y Motor: Moving 1348 steps-27
17-03-18 01:27:59.330 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:27:59.330 -07 000000455 INF: FPGA: Recv ZDACR 37739
17-03-18 01:27:59.340 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:27:59.340 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:27:59.340 -07 000000467 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 01:27:59.520 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:27:59.520 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:27:59.610 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:27:59.610 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:27:59.610 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:59.610 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:27:59.610 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:27:59.610 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:27:59.610 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:59.610 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 01:27:59.610 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:27:59.620 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:27:59.710 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:27:59.710 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 01:27:59.760 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:27:59.760 -07 000000424 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:27:59.770 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:27:59.770 -07 000000487 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:27:59.770 -07 000000487 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 01:27:59.770 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.843 mm, average velocity = 2.162 mm/sec
17-03-18 01:28:00.720 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:00.720 -07 000000467 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:28:00.730 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:00.730 -07 000000487 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:00.750 -07 000000487 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:28:00.750 -07 000000487 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:28:00.750 -07 000000487 INF: Y Motor: Moved to 73.1758 after 1459 ms (table move)
17-03-18 01:28:00.760 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172758 mm (DAC = 37739)
17-03-18 01:28:00.760 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:00.760 -07 000000608 INF: FPGA: Recv ZSGSRD 36188
17-03-18 01:28:00.770 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:00.770 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:00.770 -07 000000590 INF: FPGA: Recv ZSGSRD 36182
17-03-18 01:28:00.780 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:00.780 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:00.780 -07 000000625 INF: FPGA: Recv ZSGSRD 36176
17-03-18 01:28:00.790 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:00.790 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:00.790 -07 000000487 INF: FPGA: Recv ZSGSRD 36187
17-03-18 01:28:00.800 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:00.800 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:00.800 -07 000000474 INF: FPGA: Recv ZSGSRD 36188
17-03-18 01:28:00.810 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:00.810 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:00.810 -07 000000590 INF: FPGA: Recv ZSGSRD 36182
17-03-18 01:28:00.820 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:00.820 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:00.820 -07 000000502 INF: FPGA: Recv ZSGSRD 36184
17-03-18 01:28:00.830 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:00.830 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:00.830 -07 000000467 INF: FPGA: Recv ZSGSRD 36179
17-03-18 01:28:00.840 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:00.840 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:00.840 -07 000000447 INF: FPGA: Recv ZSGSRD 36184
17-03-18 01:28:00.850 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:00.850 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:00.850 -07 000000618 INF: FPGA: Recv ZSGSRD 36181
17-03-18 01:28:00.860 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:00.860 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:00.860 -07 000000502 INF: FPGA: Recv ZPIEZORD 32213
17-03-18 01:28:00.870 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:00.870 -07 000000629 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.759 V. Piezo Error = -8.8 V.
17-03-18 01:28:00.870 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36183 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36183 (-171.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36176 (-171.8 uncal um), Max = 36188 (-171.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:28:00.870 -07 000000629 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36183, posNoise = 5, negNoise = 7
17-03-18 01:28:00.870 -07 000000629 INF: Z Motor: After move to -0.172758, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:00.870 -07 000000629 INF: Z Motor: Settle wait time = 1462 ms, measure time = 110 ms (allowed 150 ms), total time = 1572 ms
17-03-18 01:28:00.870 -07 000000629 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:28:00.910 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 01:28:00.910 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:28:00.910 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:00.910 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:00.910 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:00.910 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:00.910 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:28:00.910 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:00.910 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:28:00.910 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:28:00.920 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:00.920 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:28:00.920 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:28:00.920 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:28:00.930 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:28:00.970 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:28:01.270 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:28:01.270 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:28:01.270 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:28:01.280 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) start.
17-03-18 01:28:01.310 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:28:01.310 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:28:01.310 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:28:01.390 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:28:01.390 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:01.390 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:28:01.390 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:28:01.410 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:01.410 -07 000000447 INF: Autofocus start
17-03-18 01:28:01.410 -07 000000447 INF: MeasureProfile start
17-03-18 01:28:01.410 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:01.420 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:28:01.420 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:28:01.430 -07 000000447 INF: MeasureProfile done
17-03-18 01:28:01.430 -07 000000447 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:28:01.430 -07 000000447 INF: Autofocus finished
17-03-18 01:28:01.620 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:28:01.620 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:28:01.620 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.172770619936472. ----------
17-03-18 01:28:01.630 -07 000000610 INF: Cycle	87	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:28:01.630 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36236, sync = True, waitForSettling = True)
17-03-18 01:28:01.630 -07 000000610 INF: Z Motor: Moving to -0.165878 mm, started at -0.172771 mm, distance = 6.89 um
17-03-18 01:28:01.630 -07 000000610 INF: FPGA: Xmit ZDACW 36236\n [Z Motor]
17-03-18 01:28:01.630 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:28:01.640 -07 000000610 INF: FPGA: 'ZDACW 36236' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:28:01.640 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:01.640 -07 000000591 INF: FPGA: Recv ZDACR 36236
17-03-18 01:28:01.650 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:01.650 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:28:01.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:01.800 -07 000000424 INF: FPGA: Recv ZSGSRD 35111
17-03-18 01:28:01.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:01.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:01.810 -07 000000608 INF: FPGA: Recv ZSGSRD 35112
17-03-18 01:28:01.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:01.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:01.820 -07 000000625 INF: FPGA: Recv ZSGSRD 35110
17-03-18 01:28:01.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:01.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:01.830 -07 000000502 INF: FPGA: Recv ZSGSRD 35109
17-03-18 01:28:01.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:01.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:01.840 -07 000000487 INF: FPGA: Recv ZSGSRD 35115
17-03-18 01:28:01.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:01.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:01.850 -07 000000608 INF: FPGA: Recv ZSGSRD 35114
17-03-18 01:28:01.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:01.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:01.860 -07 000000455 INF: FPGA: Recv ZSGSRD 35115
17-03-18 01:28:01.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:01.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:01.870 -07 000000455 INF: FPGA: Recv ZSGSRD 35106
17-03-18 01:28:01.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:01.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:01.880 -07 000000625 INF: FPGA: Recv ZSGSRD 35109
17-03-18 01:28:01.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:01.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:01.890 -07 000000591 INF: FPGA: Recv ZSGSRD 35119
17-03-18 01:28:01.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:01.900 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:01.900 -07 000000461 INF: FPGA: Recv ZPIEZORD 30786
17-03-18 01:28:01.910 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:01.910 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.529 V. Piezo Error = -9.5 V.
17-03-18 01:28:01.910 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35112 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35112 (-165.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35106 (-165.0 uncal um), Max = 35119 (-165.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:28:01.910 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35112, posNoise = 7, negNoise = 6
17-03-18 01:28:01.910 -07 000000610 INF: Z Motor: After move to -0.165878, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:01.910 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:28:01.910 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:01.910 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:01.910 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:01.910 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:28:01.910 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:01.910 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:01.910 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:28:01.910 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:28:01.910 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:01.910 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:28:01.910 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:28:01.910 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:28:01.910 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:01.910 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:28:01.910 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:28:01.920 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:28:01.920 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:28:01.920 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:28:01.920 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:28:01.930 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:28:01.930 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36413 150\n [Camera]
17-03-18 01:28:02.130 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:28:02.260 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:28:02.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:28:02.290 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.985358,
17-03-18 01:28:02.520 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:28:02.520 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:28:02.520 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:02.520 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:02.520 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:28:02.520 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:28:02.520 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:28:02.520 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:02.520 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:02.520 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:28:02.710 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36413 775
17-03-18 01:28:02.860 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:28:02.920 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:28:02.920 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:28:02.920 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:02.930 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:28:02.930 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:28:02.930 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:02.930 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:02.930 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:28:02.930 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:02.940 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:28:03.050 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:28:03.050 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:28:03.050 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:03.160 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:28:03.160 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:28:03.160 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:03.170 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:03.170 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:28:03.170 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:03.170 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:28:03.240 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:28:03.240 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:28:03.240 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36413 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-18 01:28:03.240 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:28:03.250 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.165890288732646. ------
17-03-18 01:28:03.250 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:03.250 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17224 mm
17-03-18 01:28:03.250 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:28:03.250 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:28:03.250 -07 000000474 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 01:28:03.250 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:03.250 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37626, sync = True, waitForSettling = False)
17-03-18 01:28:03.250 -07 000000461 INF: Z Motor: Moving to -0.172241 mm, started at -0.165890 mm, distance = -6.35 um
17-03-18 01:28:03.260 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:28:03.260 -07 000000461 INF: FPGA: Xmit ZDACW 37626\n [Z Motor]
17-03-18 01:28:03.260 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:28:03.270 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:03.270 -07 000000461 INF: FPGA: 'ZDACW 37626' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:28:03.270 -07 000000479 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:28:03.280 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:28:03.280 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:28:03.280 -07 000000474 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:03.280 -07 000000474 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:28:03.280 -07 000000474 INF: Y Motor: Moving 1354 steps-34
17-03-18 01:28:03.290 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:03.290 -07 000000424 INF: FPGA: Recv ZDACR 37626
17-03-18 01:28:03.300 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:28:03.300 -07 000000461 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 01:28:03.300 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:28:03.480 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:28:03.480 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:28:03.570 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:28:03.570 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:28:03.570 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:03.570 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:28:03.570 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:28:03.570 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:03.570 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:03.580 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:03.580 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 01:28:03.580 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:28:03.680 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 01:28:03.680 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 395 ms overall
17-03-18 01:28:03.710 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:03.710 -07 000000455 INF: FPGA: Recv YRDPOS 151568
17-03-18 01:28:03.720 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:28:03.720 -07 000000474 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:03.720 -07 000000474 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:28:03.720 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.847 mm, average velocity = 2.144 mm/sec
17-03-18 01:28:04.670 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:04.670 -07 000000479 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:28:04.680 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:04.680 -07 000000474 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:04.690 -07 000000474 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:28:04.700 -07 000000474 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:28:04.700 -07 000000474 INF: Y Motor: Moved to 74.0083 after 1443 ms (table move)
17-03-18 01:28:04.700 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172241 mm (DAC = 37626)
17-03-18 01:28:04.700 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:04.700 -07 000000455 INF: FPGA: Recv ZSGSRD 36107
17-03-18 01:28:04.710 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:28:04.710 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:04.710 -07 000000438 INF: FPGA: Recv ZSGSRD 36102
17-03-18 01:28:04.720 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:04.720 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:04.720 -07 000000424 INF: FPGA: Recv ZSGSRD 36101
17-03-18 01:28:04.730 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:04.730 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:04.730 -07 000000474 INF: FPGA: Recv ZSGSRD 36103
17-03-18 01:28:04.740 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:04.740 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:04.740 -07 000000455 INF: FPGA: Recv ZSGSRD 36106
17-03-18 01:28:04.750 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:04.750 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:04.750 -07 000000438 INF: FPGA: Recv ZSGSRD 36108
17-03-18 01:28:04.760 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:04.760 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:04.760 -07 000000424 INF: FPGA: Recv ZSGSRD 36100
17-03-18 01:28:04.770 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:04.770 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:04.770 -07 000000461 INF: FPGA: Recv ZSGSRD 36103
17-03-18 01:28:04.780 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:04.780 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:04.780 -07 000000474 INF: FPGA: Recv ZSGSRD 36102
17-03-18 01:28:04.790 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:04.790 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:04.790 -07 000000438 INF: FPGA: Recv ZSGSRD 36102
17-03-18 01:28:04.800 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:04.800 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:04.800 -07 000000424 INF: FPGA: Recv ZPIEZORD 32082
17-03-18 01:28:04.810 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:04.810 -07 000000608 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.741 V. Piezo Error = -8.9 V.
17-03-18 01:28:04.810 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36103 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36102 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36100 (-171.4 uncal um), Max = 36108 (-171.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:28:04.810 -07 000000608 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36103, posNoise = 5, negNoise = 3
17-03-18 01:28:04.810 -07 000000608 INF: Z Motor: After move to -0.172241, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:04.810 -07 000000608 INF: Z Motor: Settle wait time = 1447 ms, measure time = 106 ms (allowed 150 ms), total time = 1553 ms
17-03-18 01:28:04.810 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 01:28:04.860 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 01:28:04.860 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:28:04.860 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:04.860 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:04.860 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:04.860 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:28:04.860 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:04.860 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:04.860 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:04.860 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:28:04.870 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:04.870 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:28:04.870 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:28:04.870 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:28:04.880 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:28:04.920 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:28:05.220 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:28:05.220 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:28:05.220 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:28:05.220 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 01:28:05.260 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:28:05.260 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 01:28:05.260 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:28:05.340 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:28:05.340 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:05.340 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:28:05.340 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 01:28:05.360 -07 000000474 INF: Autofocus start
17-03-18 01:28:05.360 -07 000000474 INF: MeasureProfile start
17-03-18 01:28:05.360 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:05.360 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:05.370 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:28:05.370 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:28:05.370 -07 000000474 INF: MeasureProfile done
17-03-18 01:28:05.370 -07 000000474 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:28:05.370 -07 000000474 INF: Autofocus finished
17-03-18 01:28:05.570 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:28:05.570 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:28:05.570 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.172256682965131. ----------
17-03-18 01:28:05.570 -07 000000610 INF: Cycle	87	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:28:05.580 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36159, sync = True, waitForSettling = True)
17-03-18 01:28:05.580 -07 000000610 INF: Z Motor: Moving to -0.165525 mm, started at -0.172257 mm, distance = 6.73 um
17-03-18 01:28:05.580 -07 000000610 INF: FPGA: Xmit ZDACW 36159\n [Z Motor]
17-03-18 01:28:05.580 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:28:05.590 -07 000000610 INF: FPGA: 'ZDACW 36159' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:28:05.590 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:05.590 -07 000000447 INF: FPGA: Recv ZDACR 36159
17-03-18 01:28:05.600 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:05.600 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:28:05.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:05.750 -07 000000467 INF: FPGA: Recv ZSGSRD 35058
17-03-18 01:28:05.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:05.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:05.760 -07 000000455 INF: FPGA: Recv ZSGSRD 35056
17-03-18 01:28:05.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:05.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:05.770 -07 000000608 INF: FPGA: Recv ZSGSRD 35055
17-03-18 01:28:05.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:05.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:05.780 -07 000000461 INF: FPGA: Recv ZSGSRD 35060
17-03-18 01:28:05.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:05.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:05.790 -07 000000424 INF: FPGA: Recv ZSGSRD 35054
17-03-18 01:28:05.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:05.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:05.800 -07 000000502 INF: FPGA: Recv ZSGSRD 35063
17-03-18 01:28:05.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:05.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:05.810 -07 000000591 INF: FPGA: Recv ZSGSRD 35058
17-03-18 01:28:05.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:05.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:05.820 -07 000000487 INF: FPGA: Recv ZSGSRD 35057
17-03-18 01:28:05.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:05.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:05.830 -07 000000590 INF: FPGA: Recv ZSGSRD 35062
17-03-18 01:28:05.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:05.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:05.840 -07 000000479 INF: FPGA: Recv ZSGSRD 35053
17-03-18 01:28:05.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:05.850 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:05.850 -07 000000618 INF: FPGA: Recv ZPIEZORD 30710
17-03-18 01:28:05.860 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:05.860 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.518 V. Piezo Error = -9.6 V.
17-03-18 01:28:05.860 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.5 um, Read 10 ADC samples: Avg = 35058 (-164.7 uncal um), Error = 0.8 uncal um, Median = 35058 (-164.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35053 (-164.6 uncal um), Max = 35063 (-164.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:28:05.860 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35058, posNoise = 5, negNoise = 5
17-03-18 01:28:05.860 -07 000000610 INF: Z Motor: After move to -0.165525, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:05.860 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:28:05.860 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:05.860 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:05.860 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:28:05.860 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:05.860 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:28:05.860 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:05.860 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:05.860 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:28:05.860 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:28:05.860 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:28:05.860 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:28:05.860 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:28:05.870 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:28:05.870 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:28:05.870 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:28:05.870 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:28:05.880 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:28:05.880 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:28:05.880 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:28:05.880 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:28:05.880 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36336 150\n [Camera]
17-03-18 01:28:06.080 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:28:06.470 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:28:06.470 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:28:06.470 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:06.480 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:28:06.480 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:28:06.480 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:06.480 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2617245512, 0x0, 391868352) start.
17-03-18 01:28:06.480 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:06.480 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:06.480 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:28:06.660 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36336 775
17-03-18 01:28:06.810 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:28:06.870 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:28:06.870 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:28:06.870 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:06.870 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2617245512, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:28:06.870 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:28:06.870 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:06.880 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:06.880 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:06.880 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:28:06.880 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:28:07.000 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:28:07.000 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:28:07.000 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:07.110 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:28:07.110 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:28:07.110 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:07.120 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:07.120 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:28:07.120 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:07.120 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:28:07.190 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:28:07.190 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:28:07.190 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36336 150' command took 2 ms to send, 1309 ms to get response, and 1314 ms overall
17-03-18 01:28:07.200 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:28:07.200 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.165543381276991. ------
17-03-18 01:28:07.200 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:07.200 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17149 mm
17-03-18 01:28:07.200 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:28:07.200 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:28:07.200 -07 000000591 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 01:28:07.200 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:07.200 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37461, sync = True, waitForSettling = False)
17-03-18 01:28:07.200 -07 000000502 INF: Z Motor: Moving to -0.171485 mm, started at -0.165543 mm, distance = -5.94 um
17-03-18 01:28:07.210 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:28:07.210 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:07.210 -07 000000590 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:28:07.220 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:28:07.220 -07 000000591 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:07.220 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:28:07.220 -07 000000591 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:28:07.220 -07 000000591 INF: Y Motor: Moving 1351 steps-30
17-03-18 01:28:07.230 -07 000000502 INF: FPGA: Xmit ZDACW 37461\n [Z Motor]
17-03-18 01:28:07.230 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:28:07.240 -07 000000502 INF: FPGA: 'ZDACW 37461' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 01:28:07.240 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:28:07.250 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:07.250 -07 000000625 INF: FPGA: Recv ZDACR 37461
17-03-18 01:28:07.260 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:28:07.260 -07 000000502 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 01:28:07.260 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:28:07.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:28:07.420 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:28:07.420 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 215 ms overall
17-03-18 01:28:07.520 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:28:07.520 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:28:07.520 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:07.520 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:28:07.520 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:28:07.520 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:07.520 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:07.520 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 01:28:07.520 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:07.530 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:28:07.610 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 01:28:07.610 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:28:07.650 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:07.650 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.997626,
17-03-18 01:28:07.650 -07 000000479 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:28:07.660 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:28:07.660 -07 000000591 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:07.660 -07 000000591 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 01:28:07.660 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.143 mm/sec
17-03-18 01:28:08.610 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:08.610 -07 000000467 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:28:08.620 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:08.620 -07 000000591 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:08.630 -07 000000591 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:28:08.630 -07 000000591 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:28:08.630 -07 000000591 INF: Y Motor: Moved to 74.8315 after 1431 ms (table move)
17-03-18 01:28:08.640 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171485 mm (DAC = 37461)
17-03-18 01:28:08.640 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:08.640 -07 000000479 INF: FPGA: Recv ZSGSRD 35996
17-03-18 01:28:08.650 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:28:08.650 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:08.650 -07 000000618 INF: FPGA: Recv ZSGSRD 35981
17-03-18 01:28:08.660 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:08.660 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:08.660 -07 000000424 INF: FPGA: Recv ZSGSRD 35974
17-03-18 01:28:08.670 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:08.670 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:08.670 -07 000000479 INF: FPGA: Recv ZSGSRD 35985
17-03-18 01:28:08.680 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:08.680 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:08.680 -07 000000625 INF: FPGA: Recv ZSGSRD 35983
17-03-18 01:28:08.690 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:08.690 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:08.690 -07 000000447 INF: FPGA: Recv ZSGSRD 35993
17-03-18 01:28:08.700 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:08.700 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:08.700 -07 000000625 INF: FPGA: Recv ZSGSRD 35983
17-03-18 01:28:08.710 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:08.710 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:08.710 -07 000000591 INF: FPGA: Recv ZSGSRD 35985
17-03-18 01:28:08.720 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:08.720 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:08.720 -07 000000625 INF: FPGA: Recv ZSGSRD 35984
17-03-18 01:28:08.730 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:08.730 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:08.730 -07 000000502 INF: FPGA: Recv ZSGSRD 35978
17-03-18 01:28:08.740 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:08.740 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:08.740 -07 000000467 INF: FPGA: Recv ZPIEZORD 31947
17-03-18 01:28:08.750 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:08.750 -07 000000455 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.716 V. Piezo Error = -8.9 V.
17-03-18 01:28:08.750 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35984 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35984 (-170.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 35974 (-170.5 uncal um), Max = 35996 (-170.7 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:28:08.750 -07 000000455 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35984, posNoise = 12, negNoise = 10
17-03-18 01:28:08.750 -07 000000455 INF: Z Motor: After move to -0.171485, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:08.750 -07 000000455 INF: Z Motor: Settle wait time = 1433 ms, measure time = 108 ms (allowed 150 ms), total time = 1541 ms
17-03-18 01:28:08.750 -07 000000455 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:28:08.800 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-18 01:28:08.800 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:28:08.800 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:08.800 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:08.800 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:08.800 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:08.800 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:28:08.800 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:08.800 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:08.800 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:28:08.810 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:08.810 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:28:08.820 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:28:08.820 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:28:08.820 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:28:08.870 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:28:09.170 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:28:09.170 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:28:09.170 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:28:09.170 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) start.
17-03-18 01:28:09.210 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:28:09.210 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 01:28:09.210 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 01:28:09.280 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:28:09.280 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:09.280 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:28:09.280 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:28:09.310 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:09.310 -07 000000591 INF: Autofocus start
17-03-18 01:28:09.310 -07 000000591 INF: MeasureProfile start
17-03-18 01:28:09.320 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:09.320 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:28:09.320 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:28:09.330 -07 000000591 INF: MeasureProfile done
17-03-18 01:28:09.330 -07 000000591 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:28:09.330 -07 000000591 INF: Autofocus finished
17-03-18 01:28:09.520 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:28:09.520 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 01:28:09.530 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.171492201720261. ----------
17-03-18 01:28:09.530 -07 000000610 INF: Cycle	87	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:28:09.530 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35941, sync = True, waitForSettling = True)
17-03-18 01:28:09.530 -07 000000610 INF: Z Motor: Moving to -0.164527 mm, started at -0.171492 mm, distance = 6.96 um
17-03-18 01:28:09.530 -07 000000610 INF: FPGA: Xmit ZDACW 35941\n [Z Motor]
17-03-18 01:28:09.530 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:28:09.540 -07 000000610 INF: FPGA: 'ZDACW 35941' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:28:09.540 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:09.540 -07 000000479 INF: FPGA: Recv ZDACR 35941
17-03-18 01:28:09.550 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:09.550 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:28:09.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:09.700 -07 000000474 INF: FPGA: Recv ZSGSRD 34900
17-03-18 01:28:09.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:09.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:09.710 -07 000000629 INF: FPGA: Recv ZSGSRD 34903
17-03-18 01:28:09.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:09.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:09.720 -07 000000618 INF: FPGA: Recv ZSGSRD 34907
17-03-18 01:28:09.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:09.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:09.730 -07 000000438 INF: FPGA: Recv ZSGSRD 34901
17-03-18 01:28:09.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:09.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:09.740 -07 000000591 INF: FPGA: Recv ZSGSRD 34905
17-03-18 01:28:09.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:09.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:09.750 -07 000000487 INF: FPGA: Recv ZSGSRD 34899
17-03-18 01:28:09.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:09.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:09.760 -07 000000479 INF: FPGA: Recv ZSGSRD 34903
17-03-18 01:28:09.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:09.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:09.770 -07 000000447 INF: FPGA: Recv ZSGSRD 34903
17-03-18 01:28:09.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:09.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:09.780 -07 000000591 INF: FPGA: Recv ZSGSRD 34898
17-03-18 01:28:09.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:09.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:09.790 -07 000000625 INF: FPGA: Recv ZSGSRD 34905
17-03-18 01:28:09.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:09.800 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:09.800 -07 000000502 INF: FPGA: Recv ZPIEZORD 30502
17-03-18 01:28:09.810 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:09.810 -07 000000610 INF: Z Motor: Piezo is near 45.2 V (nominally 0 to 100 V), expect near 54.8 V, since DAC is at 5.484 V. Piezo Error = -9.7 V.
17-03-18 01:28:09.810 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.5 um, Read 10 ADC samples: Avg = 34902 (-163.7 uncal um), Error = 0.8 uncal um, Median = 34903 (-163.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34898 (-163.7 uncal um), Max = 34907 (-163.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:28:09.810 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34902, posNoise = 5, negNoise = 4
17-03-18 01:28:09.810 -07 000000610 INF: Z Motor: After move to -0.164527, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:09.810 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:28:09.810 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:09.810 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:09.810 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:09.810 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:09.810 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:28:09.810 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:09.810 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:28:09.810 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:28:09.810 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:09.810 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:28:09.810 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:28:09.810 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:28:09.820 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:28:09.820 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:28:09.820 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:28:09.820 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:28:09.830 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:28:09.830 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:28:09.830 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:28:09.830 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:28:09.830 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36118 150\n [Camera]
17-03-18 01:28:10.030 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:28:10.420 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:28:10.420 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:28:10.420 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:10.420 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:10.420 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:28:10.420 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:28:10.420 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:28:10.420 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:10.420 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:10.420 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:28:10.610 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36118 775
17-03-18 01:28:10.760 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:28:10.820 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:28:10.820 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:28:10.820 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:10.820 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:28:10.820 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:28:10.820 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:10.820 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:10.820 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:28:10.830 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:10.830 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:28:10.950 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:28:10.950 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:28:10.950 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:11.060 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:28:11.060 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:28:11.060 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:11.070 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:11.070 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:28:11.070 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:11.070 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:28:11.140 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:28:11.140 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:28:11.140 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36118 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-18 01:28:11.470 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:28:11.470 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:28:11.470 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:11.470 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:28:11.470 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:28:11.470 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:11.470 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:11.480 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:11.480 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 01:28:11.480 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:28:11.480 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 01:28:11.520 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 01:28:11.520 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:28:11.560 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 01:28:11.560 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 01:28:11.560 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:28:11.570 -07 000000461 INF: FPGA: Recv EMCUR 
17-03-18 01:28:11.570 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:28:11.570 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 01:28:12.070 -07 000000438 INF: FPGA: Recv EMIN
17-03-18 01:28:12.070 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 01:28:12.070 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 01:28:12.070 -07 000000487 INF: FPGA: Recv EMCUR 
17-03-18 01:28:12.080 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:28:12.080 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:28:12.080 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.164541204182876. ------
17-03-18 01:28:12.080 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:12.080 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13928 mm
17-03-18 01:28:12.080 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:28:12.090 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:28:12.090 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 30425, sync = True, waitForSettling = False)
17-03-18 01:28:12.090 -07 000000625 INF: Z Motor: Moving to -0.139277 mm, started at -0.164541 mm, distance = 25.26 um
17-03-18 01:28:12.090 -07 000000625 INF: FPGA: Xmit ZDACW 30425\n [Z Motor]
17-03-18 01:28:12.090 -07 000000591 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-18 01:28:12.090 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:12.090 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 01:28:12.090 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:28:12.100 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:28:12.100 -07 000000625 INF: FPGA: 'ZDACW 30425' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:28:12.110 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:12.110 -07 000000502 INF: FPGA: Recv YRDPOS 153257
17-03-18 01:28:12.120 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:28:12.120 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:12.120 -07 000000591 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:12.120 -07 000000447 INF: FPGA: Recv ZDACR 30425
17-03-18 01:28:12.120 -07 000000591 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 01:28:12.120 -07 000000591 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:28:12.130 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:28:12.130 -07 000000625 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 01:28:12.130 -07 000000591 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:28:12.260 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:28:12.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:28:12.300 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:28:12.300 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-18 01:28:13.020 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.000345,
17-03-18 01:28:13.760 -07 000000467 INF: FPGA: Recv YMVTO 122702 23904
17-03-18 01:28:13.760 -07 000000591 INF: FPGA: 'YMVTO 122701' command took 1 ms to send, 1620 ms to get response, and 1634 ms overall
17-03-18 01:28:13.760 -07 000000591 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 01:28:13.760 -07 000000591 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23904 steps (14.940 mm). Slippage = 0.020 mm (0.00%).
17-03-18 01:28:13.760 -07 000000591 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1634 ms, distance = 14.919 mm, average velocity = 9.130 mm/sec
17-03-18 01:28:16.610 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:16.610 -07 000000625 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:28:16.620 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:16.620 -07 000000591 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:16.650 -07 000000591 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:28:16.650 -07 000000591 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 01:28:16.650 -07 000000591 INF: Y Motor: Moved to 59.9106 after 4564 ms
17-03-18 01:28:16.650 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139277 mm (DAC = 30425)
17-03-18 01:28:16.650 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:16.660 -07 000000618 INF: FPGA: Recv ZSGSRD 30972
17-03-18 01:28:16.660 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:28:16.660 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:16.660 -07 000000424 INF: FPGA: Recv ZSGSRD 30969
17-03-18 01:28:16.670 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:28:16.670 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:16.670 -07 000000591 INF: FPGA: Recv ZSGSRD 30972
17-03-18 01:28:16.680 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:16.680 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:16.680 -07 000000625 INF: FPGA: Recv ZSGSRD 30966
17-03-18 01:28:16.690 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:16.690 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:16.690 -07 000000474 INF: FPGA: Recv ZSGSRD 30969
17-03-18 01:28:16.700 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:16.700 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:16.700 -07 000000629 INF: FPGA: Recv ZSGSRD 30974
17-03-18 01:28:16.710 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:16.710 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:16.710 -07 000000591 INF: FPGA: Recv ZSGSRD 30969
17-03-18 01:28:16.720 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:16.720 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:16.720 -07 000000455 INF: FPGA: Recv ZSGSRD 30971
17-03-18 01:28:16.730 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:16.730 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:16.730 -07 000000487 INF: FPGA: Recv ZSGSRD 30972
17-03-18 01:28:16.740 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:16.740 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:16.740 -07 000000591 INF: FPGA: Recv ZSGSRD 30967
17-03-18 01:28:16.750 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:16.750 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:16.750 -07 000000474 INF: FPGA: Recv ZPIEZORD 26391
17-03-18 01:28:16.760 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:16.760 -07 000000479 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -10.0 V.
17-03-18 01:28:16.760 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30970 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30970 (-138.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30966 (-138.5 uncal um), Max = 30974 (-138.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:28:16.760 -07 000000479 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30970, posNoise = 4, negNoise = 4
17-03-18 01:28:16.760 -07 000000479 INF: Z Motor: After move to -0.139277, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:16.760 -07 000000479 INF: Z Motor: Settle wait time = 4567 ms, measure time = 102 ms (allowed 150 ms), total time = 4669 ms
17-03-18 01:28:16.760 -07 000000479 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:28:16.810 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4722 ms
17-03-18 01:28:16.810 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:28:16.810 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:16.810 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:16.810 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:16.810 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:28:16.810 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:16.810 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:16.810 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:16.810 -07 000000474 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:28:16.840 -07 000000474 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 01:28:16.840 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:28:16.840 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 01:28:16.840 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:28:16.850 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:28:16.850 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 01:28:16.860 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:28:16.900 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:28:17.200 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:28:17.200 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:28:17.200 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:28:17.210 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 01:28:17.240 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:28:17.240 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 01:28:17.240 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:28:17.260 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:28:17.320 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:28:17.320 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:17.320 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:28:17.320 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:28:17.330 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:28:17.340 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:17.340 -07 000000629 INF: Image SNR check: start
17-03-18 01:28:17.340 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:17.350 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:28:17.350 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:28:17.360 -07 000000629 INF: Image SNR check: pass  [peak (Max-Min)=133.68]
17-03-18 01:28:17.360 -07 000000629 INF: Autofocus start
17-03-18 01:28:17.360 -07 000000629 INF: MeasureProfile start
17-03-18 01:28:17.370 -07 000000629 INF: MeasureProfile done
17-03-18 01:28:17.370 -07 000000629 INF: X=48  Z correction [um]=0.2069503
17-03-18 01:28:17.370 -07 000000629 INF: Autofocus finished
17-03-18 01:28:17.550 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:28:17.550 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:28:17.550 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.139281202041472. ----------
17-03-18 01:28:17.550 -07 000000610 INF: Cycle	87	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:28:17.560 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28983, sync = True, waitForSettling = True)
17-03-18 01:28:17.560 -07 000000610 INF: Z Motor: Moving to -0.132676 mm, started at -0.139281 mm, distance = 6.61 um
17-03-18 01:28:17.560 -07 000000610 INF: FPGA: Xmit ZDACW 28983\n [Z Motor]
17-03-18 01:28:17.560 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:28:17.570 -07 000000610 INF: FPGA: 'ZDACW 28983' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:17.570 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:17.570 -07 000000479 INF: FPGA: Recv ZDACR 28983
17-03-18 01:28:17.580 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:17.580 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:28:17.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:17.730 -07 000000474 INF: FPGA: Recv ZSGSRD 29948
17-03-18 01:28:17.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:17.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:17.740 -07 000000625 INF: FPGA: Recv ZSGSRD 29945
17-03-18 01:28:17.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:17.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:17.750 -07 000000502 INF: FPGA: Recv ZSGSRD 29940
17-03-18 01:28:17.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:17.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:17.760 -07 000000502 INF: FPGA: Recv ZSGSRD 29937
17-03-18 01:28:17.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:17.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:17.770 -07 000000447 INF: FPGA: Recv ZSGSRD 29947
17-03-18 01:28:17.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:17.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:17.780 -07 000000618 INF: FPGA: Recv ZSGSRD 29939
17-03-18 01:28:17.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:17.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:17.790 -07 000000447 INF: FPGA: Recv ZSGSRD 29936
17-03-18 01:28:17.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:17.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:17.800 -07 000000618 INF: FPGA: Recv ZSGSRD 29941
17-03-18 01:28:17.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:17.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:17.810 -07 000000479 INF: FPGA: Recv ZSGSRD 29941
17-03-18 01:28:17.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:17.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:17.820 -07 000000618 INF: FPGA: Recv ZSGSRD 29944
17-03-18 01:28:17.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:17.830 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:17.830 -07 000000447 INF: FPGA: Recv ZPIEZORD 25310
17-03-18 01:28:17.840 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:17.840 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.423 V. Piezo Error = -10.2 V.
17-03-18 01:28:17.840 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29942 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29941 (-131.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29936 (-131.9 uncal um), Max = 29948 (-131.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:28:17.840 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29942, posNoise = 6, negNoise = 6
17-03-18 01:28:17.840 -07 000000610 INF: Z Motor: After move to -0.132676, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:17.840 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:28:17.840 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:17.840 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:17.840 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:17.840 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:17.840 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:28:17.840 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:17.840 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:28:17.840 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:28:17.840 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:28:17.840 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:28:17.840 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:28:17.840 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:28:17.850 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:17.850 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:28:17.850 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:28:17.850 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:28:17.860 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 01:28:17.860 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:28:17.870 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:28:17.870 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:28:17.870 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:28:17.870 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 01:28:17.880 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29160 150\n [Camera]
17-03-18 01:28:18.080 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:28:18.380 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.003063,
17-03-18 01:28:18.470 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:28:18.470 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:28:18.470 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:18.470 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:28:18.470 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:28:18.470 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:18.470 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:18.470 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:28:18.470 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:18.470 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2617245512, 0x0, 391868352) start.
17-03-18 01:28:18.660 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29160 775
17-03-18 01:28:18.810 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:28:18.870 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2617245512, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:28:18.870 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:28:18.980 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:18.980 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 507 ms.
17-03-18 01:28:18.980 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-18 01:28:18.980 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:18.980 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:18.980 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-18 01:28:18.980 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:18.990 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-18 01:28:19.000 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:28:19.000 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:28:19.000 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:19.000 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:28:19.000 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:28:19.000 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:19.000 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:19.010 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:28:19.010 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:19.010 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:28:19.190 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 01:28:19.190 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:28:19.190 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29160 150' command took 2 ms to send, 1307 ms to get response, and 1316 ms overall
17-03-18 01:28:19.190 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:28:19.190 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.132677111959742. ------
17-03-18 01:28:19.200 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:19.200 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13891 mm
17-03-18 01:28:19.200 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:28:19.200 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:19.200 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:28:19.200 -07 000000629 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 01:28:19.200 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 30346, sync = True, waitForSettling = False)
17-03-18 01:28:19.200 -07 000000467 INF: Z Motor: Moving to -0.138915 mm, started at -0.132677 mm, distance = -6.24 um
17-03-18 01:28:19.210 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:28:19.210 -07 000000467 INF: FPGA: Xmit ZDACW 30346\n [Z Motor]
17-03-18 01:28:19.210 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:28:19.220 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:19.220 -07 000000467 INF: FPGA: 'ZDACW 30346' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:19.220 -07 000000502 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:28:19.230 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:28:19.230 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 01:28:19.230 -07 000000629 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:19.230 -07 000000629 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:28:19.230 -07 000000629 INF: Y Motor: Moving 1331 steps1
17-03-18 01:28:19.240 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:19.240 -07 000000424 INF: FPGA: Recv ZDACR 30346
17-03-18 01:28:19.250 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:28:19.250 -07 000000467 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 01:28:19.250 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:28:19.400 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:28:19.400 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:28:19.400 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:19.400 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:28:19.400 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:28:19.400 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:19.400 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:19.410 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:19.410 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:28:19.410 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:28:19.430 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:28:19.430 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:28:19.620 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 01:28:19.620 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:28:19.660 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:19.660 -07 000000461 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:28:19.670 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:28:19.670 -07 000000629 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:19.670 -07 000000629 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:28:19.670 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.090 mm/sec
17-03-18 01:28:20.620 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:20.620 -07 000000461 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:28:20.630 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:20.630 -07 000000629 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:20.650 -07 000000629 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:28:20.650 -07 000000629 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:28:20.650 -07 000000629 INF: Y Motor: Moved to 60.7329 after 1450 ms (table move)
17-03-18 01:28:20.660 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138915 mm (DAC = 30346)
17-03-18 01:28:20.660 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:20.660 -07 000000629 INF: FPGA: Recv ZSGSRD 30913
17-03-18 01:28:20.670 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:28:20.670 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:20.670 -07 000000424 INF: FPGA: Recv ZSGSRD 30917
17-03-18 01:28:20.680 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:20.680 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:20.680 -07 000000618 INF: FPGA: Recv ZSGSRD 30917
17-03-18 01:28:20.690 -07 000000455 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:20.690 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:20.690 -07 000000424 INF: FPGA: Recv ZSGSRD 30906
17-03-18 01:28:20.700 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:20.700 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:20.700 -07 000000502 INF: FPGA: Recv ZSGSRD 30912
17-03-18 01:28:20.710 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:20.710 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:20.710 -07 000000502 INF: FPGA: Recv ZSGSRD 30917
17-03-18 01:28:20.720 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:20.720 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:20.720 -07 000000474 INF: FPGA: Recv ZSGSRD 30917
17-03-18 01:28:20.730 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:20.730 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:20.730 -07 000000438 INF: FPGA: Recv ZSGSRD 30911
17-03-18 01:28:20.740 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:20.740 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:20.740 -07 000000502 INF: FPGA: Recv ZSGSRD 30913
17-03-18 01:28:20.750 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:20.750 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:20.750 -07 000000502 INF: FPGA: Recv ZSGSRD 30915
17-03-18 01:28:20.760 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:20.760 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:20.760 -07 000000502 INF: FPGA: Recv ZPIEZORD 26598
17-03-18 01:28:20.770 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:20.770 -07 000000455 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.631 V. Piezo Error = -9.5 V.
17-03-18 01:28:20.770 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30914 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30914 (-138.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30906 (-138.1 uncal um), Max = 30917 (-138.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:28:20.770 -07 000000455 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30914, posNoise = 3, negNoise = 8
17-03-18 01:28:20.770 -07 000000455 INF: Z Motor: After move to -0.138915, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:20.770 -07 000000455 INF: Z Motor: Settle wait time = 1451 ms, measure time = 109 ms (allowed 150 ms), total time = 1560 ms
17-03-18 01:28:20.770 -07 000000455 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:28:20.820 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 01:28:20.820 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:28:20.820 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:20.820 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:20.820 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:20.820 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:20.820 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:28:20.820 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:20.820 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:28:20.820 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:28:20.830 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:28:20.830 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:28:20.840 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:28:20.840 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:28:20.840 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:28:20.890 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:28:21.190 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:28:21.190 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:28:21.190 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:28:21.190 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) start.
17-03-18 01:28:21.230 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:28:21.230 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 01:28:21.230 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:28:21.310 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:28:21.320 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:21.320 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:28:21.320 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:28:21.330 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:21.330 -07 000000474 INF: Autofocus start
17-03-18 01:28:21.330 -07 000000474 INF: MeasureProfile start
17-03-18 01:28:21.330 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:21.340 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:28:21.340 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:28:21.340 -07 000000474 INF: MeasureProfile done
17-03-18 01:28:21.340 -07 000000474 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:28:21.340 -07 000000474 INF: Autofocus finished
17-03-18 01:28:21.540 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:28:21.540 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:28:21.540 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.138921446161533. ----------
17-03-18 01:28:21.540 -07 000000610 INF: Cycle	87	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:28:21.550 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28870, sync = True, waitForSettling = True)
17-03-18 01:28:21.550 -07 000000610 INF: Z Motor: Moving to -0.132158 mm, started at -0.138921 mm, distance = 6.76 um
17-03-18 01:28:21.550 -07 000000610 INF: FPGA: Xmit ZDACW 28870\n [Z Motor]
17-03-18 01:28:21.550 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:28:21.560 -07 000000610 INF: FPGA: 'ZDACW 28870' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:28:21.560 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:21.560 -07 000000447 INF: FPGA: Recv ZDACR 28870
17-03-18 01:28:21.570 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:21.570 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:28:21.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:21.720 -07 000000625 INF: FPGA: Recv ZSGSRD 29864
17-03-18 01:28:21.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:21.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:21.730 -07 000000461 INF: FPGA: Recv ZSGSRD 29864
17-03-18 01:28:21.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:21.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:21.740 -07 000000438 INF: FPGA: Recv ZSGSRD 29859
17-03-18 01:28:21.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:21.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:21.750 -07 000000447 INF: FPGA: Recv ZSGSRD 29859
17-03-18 01:28:21.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:21.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:21.760 -07 000000625 INF: FPGA: Recv ZSGSRD 29861
17-03-18 01:28:21.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:21.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:21.770 -07 000000590 INF: FPGA: Recv ZSGSRD 29867
17-03-18 01:28:21.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:21.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:21.780 -07 000000502 INF: FPGA: Recv ZSGSRD 29859
17-03-18 01:28:21.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:21.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:21.790 -07 000000487 INF: FPGA: Recv ZSGSRD 29855
17-03-18 01:28:21.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:21.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:21.800 -07 000000608 INF: FPGA: Recv ZSGSRD 29859
17-03-18 01:28:21.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:21.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:21.810 -07 000000461 INF: FPGA: Recv ZSGSRD 29862
17-03-18 01:28:21.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:21.820 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:21.820 -07 000000438 INF: FPGA: Recv ZPIEZORD 25255
17-03-18 01:28:21.830 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:21.830 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.405 V. Piezo Error = -10.1 V.
17-03-18 01:28:21.830 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29861 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29860 (-131.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29855 (-131.3 uncal um), Max = 29867 (-131.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:28:21.830 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29861, posNoise = 6, negNoise = 6
17-03-18 01:28:21.830 -07 000000610 INF: Z Motor: After move to -0.132158, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:21.830 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:28:21.830 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:21.830 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:21.830 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:21.830 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:21.830 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:28:21.830 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:21.830 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:28:21.830 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:28:21.830 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:28:21.830 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:28:21.830 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:28:21.830 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:28:21.840 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:28:21.840 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:28:21.840 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:28:21.840 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:28:21.850 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:28:21.850 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:28:21.850 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:28:21.850 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:28:21.860 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29047 150\n [Camera]
17-03-18 01:28:22.060 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:28:22.260 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:28:22.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:28:22.450 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:28:22.450 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:28:22.450 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:22.450 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:22.450 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:28:22.450 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:28:22.450 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:28:22.450 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:22.450 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:22.450 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 01:28:22.640 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29047 775
17-03-18 01:28:22.790 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:28:22.830 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 01:28:22.830 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:28:22.840 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:22.840 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:22.840 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:28:22.840 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:28:22.840 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:22.840 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:22.840 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:28:22.850 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:28:22.980 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:28:22.980 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:28:22.980 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:22.980 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:22.980 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:28:22.980 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:28:22.980 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:28:22.980 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:22.980 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:22.980 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 01:28:23.170 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:28:23.170 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:28:23.170 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29047 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:28:23.170 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:28:23.170 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132156750776259. ------
17-03-18 01:28:23.170 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:23.170 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13887 mm
17-03-18 01:28:23.170 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:28:23.180 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:28:23.180 -07 000000487 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 01:28:23.180 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:23.180 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-18 01:28:23.180 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:23.180 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30335, sync = True, waitForSettling = False)
17-03-18 01:28:23.180 -07 000000502 INF: Z Motor: Moving to -0.138865 mm, started at -0.132157 mm, distance = -6.71 um
17-03-18 01:28:23.180 -07 000000629 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:28:23.190 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:28:23.190 -07 000000487 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:23.190 -07 000000487 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:28:23.190 -07 000000487 INF: Y Motor: Moving 1344 steps-20
17-03-18 01:28:23.190 -07 000000502 INF: FPGA: Xmit ZDACW 30335\n [Z Motor]
17-03-18 01:28:23.190 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:28:23.200 -07 000000502 INF: FPGA: 'ZDACW 30335' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:28:23.200 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:28:23.210 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:28:23.220 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:23.220 -07 000000591 INF: FPGA: Recv ZDACR 30335
17-03-18 01:28:23.230 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:28:23.230 -07 000000502 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 01:28:23.380 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 01:28:23.380 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:28:23.380 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:23.380 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:28:23.380 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:28:23.380 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:23.390 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:23.390 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:28:23.390 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:28:23.390 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:28:23.400 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:28:23.400 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 218 ms overall
17-03-18 01:28:23.580 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 01:28:23.580 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:28:23.630 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:23.630 -07 000000461 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:28:23.640 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:28:23.640 -07 000000487 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:23.640 -07 000000487 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:28:23.640 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 01:28:23.740 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.012614,
17-03-18 01:28:24.590 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:24.590 -07 000000625 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:28:24.600 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:24.600 -07 000000487 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:24.620 -07 000000487 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:28:24.620 -07 000000487 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:28:24.620 -07 000000487 INF: Y Motor: Moved to 61.5635 after 1446 ms (table move)
17-03-18 01:28:24.630 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138865 mm (DAC = 30335)
17-03-18 01:28:24.630 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:24.630 -07 000000438 INF: FPGA: Recv ZSGSRD 30903
17-03-18 01:28:24.640 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:28:24.640 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:24.640 -07 000000455 INF: FPGA: Recv ZSGSRD 30911
17-03-18 01:28:24.650 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:24.650 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:24.650 -07 000000590 INF: FPGA: Recv ZSGSRD 30912
17-03-18 01:28:24.660 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:24.660 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:24.660 -07 000000474 INF: FPGA: Recv ZSGSRD 30909
17-03-18 01:28:24.670 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:24.670 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:24.670 -07 000000455 INF: FPGA: Recv ZSGSRD 30911
17-03-18 01:28:24.680 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:24.680 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:24.680 -07 000000590 INF: FPGA: Recv ZSGSRD 30910
17-03-18 01:28:24.690 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:24.690 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:24.690 -07 000000438 INF: FPGA: Recv ZSGSRD 30904
17-03-18 01:28:24.700 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:24.700 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:24.700 -07 000000625 INF: FPGA: Recv ZSGSRD 30900
17-03-18 01:28:24.710 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:24.710 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:24.710 -07 000000487 INF: FPGA: Recv ZSGSRD 30903
17-03-18 01:28:24.720 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:24.720 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:24.720 -07 000000447 INF: FPGA: Recv ZSGSRD 30907
17-03-18 01:28:24.730 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:24.730 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:24.730 -07 000000447 INF: FPGA: Recv ZPIEZORD 26622
17-03-18 01:28:24.740 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:24.740 -07 000000424 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.4 V.
17-03-18 01:28:24.740 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30907 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30908 (-138.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30900 (-138.0 uncal um), Max = 30912 (-138.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:28:24.740 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30907, posNoise = 5, negNoise = 7
17-03-18 01:28:24.740 -07 000000424 INF: Z Motor: After move to -0.138865, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:24.740 -07 000000424 INF: Z Motor: Settle wait time = 1446 ms, measure time = 109 ms (allowed 150 ms), total time = 1555 ms
17-03-18 01:28:24.740 -07 000000424 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:28:24.790 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 01:28:24.790 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:28:24.790 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:24.790 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:24.790 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:24.790 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:24.790 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:28:24.790 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:24.790 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:24.790 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:28:24.800 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:28:24.800 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:28:24.810 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:28:24.810 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:28:24.810 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:28:24.860 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:28:25.160 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:28:25.160 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:28:25.160 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:28:25.160 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2672910128, 0x0, 559484976) start.
17-03-18 01:28:25.200 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:28:25.200 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 01:28:25.200 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:28:25.280 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2672910128, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 01:28:25.280 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:25.280 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:28:25.280 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 01:28:25.300 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:25.300 -07 000000590 INF: Autofocus start
17-03-18 01:28:25.300 -07 000000590 INF: MeasureProfile start
17-03-18 01:28:25.300 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:25.310 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:28:25.310 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:28:25.310 -07 000000590 INF: MeasureProfile done
17-03-18 01:28:25.310 -07 000000590 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:28:25.310 -07 000000590 INF: Autofocus finished
17-03-18 01:28:25.510 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:28:25.510 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:28:25.510 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.138876476676541. ----------
17-03-18 01:28:25.510 -07 000000610 INF: Cycle	87	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:28:25.520 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28843, sync = True, waitForSettling = True)
17-03-18 01:28:25.520 -07 000000610 INF: Z Motor: Moving to -0.132035 mm, started at -0.138876 mm, distance = 6.84 um
17-03-18 01:28:25.520 -07 000000610 INF: FPGA: Xmit ZDACW 28843\n [Z Motor]
17-03-18 01:28:25.520 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:28:25.530 -07 000000610 INF: FPGA: 'ZDACW 28843' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:28:25.530 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:25.530 -07 000000455 INF: FPGA: Recv ZDACR 28843
17-03-18 01:28:25.540 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:25.540 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:28:25.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:25.690 -07 000000591 INF: FPGA: Recv ZSGSRD 29843
17-03-18 01:28:25.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:25.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:25.700 -07 000000590 INF: FPGA: Recv ZSGSRD 29846
17-03-18 01:28:25.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:25.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:25.710 -07 000000591 INF: FPGA: Recv ZSGSRD 29835
17-03-18 01:28:25.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:25.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:25.720 -07 000000590 INF: FPGA: Recv ZSGSRD 29846
17-03-18 01:28:25.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:25.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:25.730 -07 000000591 INF: FPGA: Recv ZSGSRD 29847
17-03-18 01:28:25.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:25.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:25.740 -07 000000590 INF: FPGA: Recv ZSGSRD 29840
17-03-18 01:28:25.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:25.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:25.750 -07 000000591 INF: FPGA: Recv ZSGSRD 29852
17-03-18 01:28:25.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:25.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:25.760 -07 000000591 INF: FPGA: Recv ZSGSRD 29843
17-03-18 01:28:25.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:25.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:25.770 -07 000000625 INF: FPGA: Recv ZSGSRD 29844
17-03-18 01:28:25.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:25.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:25.780 -07 000000455 INF: FPGA: Recv ZSGSRD 29844
17-03-18 01:28:25.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:25.790 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:25.790 -07 000000474 INF: FPGA: Recv ZPIEZORD 25247
17-03-18 01:28:25.800 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:25.800 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -10.1 V.
17-03-18 01:28:25.800 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29844 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29844 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29835 (-131.2 uncal um), Max = 29852 (-131.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:28:25.800 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29844, posNoise = 8, negNoise = 9
17-03-18 01:28:25.800 -07 000000610 INF: Z Motor: After move to -0.132035, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:25.800 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:28:25.800 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:25.800 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:25.800 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:25.800 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:25.800 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:28:25.800 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:25.800 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:28:25.800 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:28:25.800 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:28:25.800 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:28:25.800 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:28:25.800 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:28:25.800 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:25.800 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:28:25.810 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:28:25.810 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:28:25.810 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:28:25.810 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:28:25.810 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:28:25.810 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:28:25.820 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29019 150\n [Camera]
17-03-18 01:28:26.020 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:28:26.410 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:28:26.410 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:28:26.410 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:26.410 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:26.410 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 01:28:26.410 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:28:26.410 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:28:26.410 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:26.410 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:26.410 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:28:26.600 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29019 775
17-03-18 01:28:26.750 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:28:26.810 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:28:26.810 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:28:26.810 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:26.810 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:28:26.810 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:26.810 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:28:26.810 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:28:26.810 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:26.820 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:26.820 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:28:26.940 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:28:26.940 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:28:26.940 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:26.940 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:26.940 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:28:26.940 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:28:26.940 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:28:26.940 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:26.940 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:26.940 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:28:27.130 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:28:27.130 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:28:27.130 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29019 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-18 01:28:27.130 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:28:27.130 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.132047539169849. ------
17-03-18 01:28:27.140 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13843 mm
17-03-18 01:28:27.140 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:28:27.140 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:27.140 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:28:27.140 -07 000000447 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-18 01:28:27.140 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:27.140 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 30239, sync = True, waitForSettling = False)
17-03-18 01:28:27.140 -07 000000625 INF: Z Motor: Moving to -0.138425 mm, started at -0.132048 mm, distance = -6.38 um
17-03-18 01:28:27.150 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:28:27.150 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:28:27.160 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:27.160 -07 000000474 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:28:27.170 -07 000000625 INF: FPGA: Xmit ZDACW 30239\n [Z Motor]
17-03-18 01:28:27.170 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:28:27.170 -07 000000447 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:27.170 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:28:27.170 -07 000000447 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:28:27.170 -07 000000447 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:28:27.180 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:28:27.180 -07 000000625 INF: FPGA: 'ZDACW 30239' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 01:28:27.190 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:27.190 -07 000000474 INF: FPGA: Recv ZDACR 30239
17-03-18 01:28:27.200 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:28:27.200 -07 000000625 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 01:28:27.260 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:28:27.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:28:27.340 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:28:27.340 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:28:27.340 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:27.340 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:28:27.340 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:28:27.340 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:27.350 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:27.350 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:28:27.350 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:28:27.350 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:28:27.350 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:28:27.350 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:28:27.550 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:28:27.550 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 01:28:27.600 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:27.600 -07 000000590 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:28:27.610 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:28:27.610 -07 000000447 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:27.610 -07 000000447 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:28:27.610 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.839 mm, average velocity = 2.191 mm/sec
17-03-18 01:28:28.560 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:28.560 -07 000000591 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:28:28.570 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:28.570 -07 000000447 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:28.590 -07 000000447 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:28:28.590 -07 000000447 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:28:28.590 -07 000000447 INF: Y Motor: Moved to 62.3955 after 1450 ms (table move)
17-03-18 01:28:28.590 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138425 mm (DAC = 30239)
17-03-18 01:28:28.600 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:28.600 -07 000000447 INF: FPGA: Recv ZSGSRD 30847
17-03-18 01:28:28.610 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:28.610 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:28.610 -07 000000625 INF: FPGA: Recv ZSGSRD 30843
17-03-18 01:28:28.620 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:28.620 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:28.620 -07 000000625 INF: FPGA: Recv ZSGSRD 30841
17-03-18 01:28:28.630 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:28.630 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:28.630 -07 000000625 INF: FPGA: Recv ZSGSRD 30842
17-03-18 01:28:28.640 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:28.640 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:28.640 -07 000000625 INF: FPGA: Recv ZSGSRD 30836
17-03-18 01:28:28.650 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:28.650 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:28.650 -07 000000625 INF: FPGA: Recv ZSGSRD 30835
17-03-18 01:28:28.660 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:28.660 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:28.660 -07 000000625 INF: FPGA: Recv ZSGSRD 30832
17-03-18 01:28:28.670 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:28.670 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:28.670 -07 000000591 INF: FPGA: Recv ZSGSRD 30835
17-03-18 01:28:28.680 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:28.680 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:28.680 -07 000000591 INF: FPGA: Recv ZSGSRD 30839
17-03-18 01:28:28.690 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:28.690 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:28.690 -07 000000591 INF: FPGA: Recv ZSGSRD 30843
17-03-18 01:28:28.700 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:28.700 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:28.700 -07 000000424 INF: FPGA: Recv ZPIEZORD 26578
17-03-18 01:28:28.710 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:28.710 -07 000000438 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.614 V. Piezo Error = -9.4 V.
17-03-18 01:28:28.710 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30839 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30840 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30832 (-137.6 uncal um), Max = 30847 (-137.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:28:28.710 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30839, posNoise = 8, negNoise = 7
17-03-18 01:28:28.710 -07 000000438 INF: Z Motor: After move to -0.138425, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:28.710 -07 000000438 INF: Z Motor: Settle wait time = 1452 ms, measure time = 111 ms (allowed 150 ms), total time = 1563 ms
17-03-18 01:28:28.710 -07 000000438 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:28:28.750 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 01:28:28.750 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:28:28.750 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:28.750 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:28.750 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:28.750 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:28.750 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:28:28.750 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:28.750 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:28.750 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:28:28.760 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:28.760 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:28:28.770 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:28:28.770 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:28:28.770 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:28:28.810 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:28:29.100 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.986717,
17-03-18 01:28:29.110 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:28:29.110 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:28:29.110 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:28:29.110 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 01:28:29.150 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:28:29.150 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:28:29.150 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 01:28:29.240 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 01:28:29.240 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:29.240 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:28:29.240 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 01:28:29.250 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:29.250 -07 000000625 INF: Autofocus start
17-03-18 01:28:29.250 -07 000000625 INF: MeasureProfile start
17-03-18 01:28:29.250 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:29.260 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:28:29.260 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:28:29.260 -07 000000625 INF: MeasureProfile done
17-03-18 01:28:29.260 -07 000000625 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:28:29.260 -07 000000625 INF: Autofocus finished
17-03-18 01:28:29.460 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:28:29.460 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:28:29.460 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138439630250901. ----------
17-03-18 01:28:29.460 -07 000000610 INF: Cycle	87	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:28:29.470 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28746, sync = True, waitForSettling = True)
17-03-18 01:28:29.470 -07 000000610 INF: Z Motor: Moving to -0.131591 mm, started at -0.138440 mm, distance = 6.85 um
17-03-18 01:28:29.470 -07 000000610 INF: FPGA: Xmit ZDACW 28746\n [Z Motor]
17-03-18 01:28:29.470 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:28:29.480 -07 000000610 INF: FPGA: 'ZDACW 28746' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:28:29.480 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:29.480 -07 000000487 INF: FPGA: Recv ZDACR 28746
17-03-18 01:28:29.490 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:29.490 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:28:29.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:29.640 -07 000000438 INF: FPGA: Recv ZSGSRD 29772
17-03-18 01:28:29.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:29.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:29.650 -07 000000438 INF: FPGA: Recv ZSGSRD 29777
17-03-18 01:28:29.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:29.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:29.660 -07 000000502 INF: FPGA: Recv ZSGSRD 29769
17-03-18 01:28:29.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:29.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:29.670 -07 000000474 INF: FPGA: Recv ZSGSRD 29767
17-03-18 01:28:29.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:29.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:29.680 -07 000000590 INF: FPGA: Recv ZSGSRD 29776
17-03-18 01:28:29.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:29.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:29.690 -07 000000474 INF: FPGA: Recv ZSGSRD 29777
17-03-18 01:28:29.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:29.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:29.700 -07 000000625 INF: FPGA: Recv ZSGSRD 29773
17-03-18 01:28:29.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:29.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:29.710 -07 000000502 INF: FPGA: Recv ZSGSRD 29772
17-03-18 01:28:29.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:29.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:29.720 -07 000000455 INF: FPGA: Recv ZSGSRD 29772
17-03-18 01:28:29.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:29.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:29.730 -07 000000438 INF: FPGA: Recv ZSGSRD 29777
17-03-18 01:28:29.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:29.740 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:29.740 -07 000000455 INF: FPGA: Recv ZPIEZORD 25193
17-03-18 01:28:29.750 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:29.750 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.386 V. Piezo Error = -10.0 V.
17-03-18 01:28:29.750 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29773 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29772 (-130.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29767 (-130.8 uncal um), Max = 29777 (-130.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:28:29.750 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29773, posNoise = 4, negNoise = 6
17-03-18 01:28:29.750 -07 000000610 INF: Z Motor: After move to -0.131591, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:29.750 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:28:29.750 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:29.750 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:29.750 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:29.750 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:28:29.750 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:29.750 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:28:29.750 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:29.750 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:28:29.750 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:29.750 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:28:29.750 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:28:29.750 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:28:29.760 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:28:29.760 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:28:29.760 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:28:29.760 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:28:29.770 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:28:29.770 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:28:29.770 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:28:29.770 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:28:29.770 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28923 150\n [Camera]
17-03-18 01:28:29.970 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:28:30.360 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:28:30.360 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:28:30.360 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:30.360 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:30.360 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:28:30.360 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:28:30.360 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:28:30.360 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:30.360 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:30.360 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 01:28:30.550 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28923 775
17-03-18 01:28:30.700 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:28:30.760 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:28:30.760 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:28:30.760 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:30.760 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:28:30.760 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:28:30.760 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:30.760 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:30.760 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:28:30.770 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:30.770 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:28:30.890 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:28:30.890 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:28:30.890 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:30.890 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:30.890 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 01:28:30.900 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:28:30.900 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:28:30.900 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:30.900 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:30.900 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:28:31.080 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:28:31.080 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:28:31.080 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28923 150' command took 2 ms to send, 1309 ms to get response, and 1315 ms overall
17-03-18 01:28:31.090 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:28:31.090 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131591420107784. ------
17-03-18 01:28:31.090 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:31.090 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13837 mm
17-03-18 01:28:31.090 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:28:31.100 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:31.100 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:28:31.100 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:28:31.100 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 30228, sync = True, waitForSettling = False)
17-03-18 01:28:31.100 -07 000000487 INF: Z Motor: Moving to -0.138375 mm, started at -0.131591 mm, distance = -6.78 um
17-03-18 01:28:31.100 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:28:31.100 -07 000000502 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 01:28:31.110 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:31.110 -07 000000438 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:28:31.120 -07 000000487 INF: FPGA: Xmit ZDACW 30228\n [Z Motor]
17-03-18 01:28:31.120 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:28:31.120 -07 000000502 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:31.120 -07 000000502 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:28:31.120 -07 000000502 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:28:31.120 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:28:31.130 -07 000000487 INF: FPGA: 'ZDACW 30228' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:28:31.130 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:28:31.140 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:31.140 -07 000000438 INF: FPGA: Recv ZDACR 30228
17-03-18 01:28:31.150 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:28:31.150 -07 000000487 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 01:28:31.290 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:28:31.290 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:28:31.290 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:31.300 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:28:31.300 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:28:31.300 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:31.300 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:28:31.300 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:28:31.300 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:28:31.300 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:31.300 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 01:28:31.310 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:28:31.500 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:28:31.500 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:28:31.550 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:31.550 -07 000000455 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:28:31.560 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:28:31.560 -07 000000502 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:31.560 -07 000000502 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 01:28:31.560 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec
17-03-18 01:28:32.260 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:28:32.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:28:32.510 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:32.510 -07 000000590 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:28:32.520 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:32.520 -07 000000502 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:32.540 -07 000000502 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:28:32.540 -07 000000502 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:28:32.540 -07 000000502 INF: Y Motor: Moved to 63.2241 after 1445 ms (table move)
17-03-18 01:28:32.550 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138375 mm (DAC = 30228)
17-03-18 01:28:32.550 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:32.550 -07 000000625 INF: FPGA: Recv ZSGSRD 30828
17-03-18 01:28:32.560 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:32.560 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:32.560 -07 000000487 INF: FPGA: Recv ZSGSRD 30826
17-03-18 01:28:32.570 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:32.570 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:32.570 -07 000000455 INF: FPGA: Recv ZSGSRD 30835
17-03-18 01:28:32.580 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:32.580 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:32.580 -07 000000438 INF: FPGA: Recv ZSGSRD 30831
17-03-18 01:28:32.590 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:32.590 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:32.590 -07 000000625 INF: FPGA: Recv ZSGSRD 30833
17-03-18 01:28:32.600 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:32.600 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:32.600 -07 000000502 INF: FPGA: Recv ZSGSRD 30828
17-03-18 01:28:32.610 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:32.610 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:32.610 -07 000000487 INF: FPGA: Recv ZSGSRD 30827
17-03-18 01:28:32.620 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:32.620 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:32.620 -07 000000455 INF: FPGA: Recv ZSGSRD 30830
17-03-18 01:28:32.630 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:32.630 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:32.630 -07 000000487 INF: FPGA: Recv ZSGSRD 30825
17-03-18 01:28:32.640 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:32.640 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:32.640 -07 000000502 INF: FPGA: Recv ZSGSRD 30830
17-03-18 01:28:32.650 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:32.650 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:32.650 -07 000000438 INF: FPGA: Recv ZPIEZORD 26588
17-03-18 01:28:32.660 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:32.660 -07 000000474 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -9.3 V.
17-03-18 01:28:32.660 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30829 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30829 (-137.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30825 (-137.6 uncal um), Max = 30835 (-137.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:28:32.660 -07 000000474 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30829, posNoise = 6, negNoise = 4
17-03-18 01:28:32.660 -07 000000474 INF: Z Motor: After move to -0.138375, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:32.660 -07 000000474 INF: Z Motor: Settle wait time = 1449 ms, measure time = 110 ms (allowed 150 ms), total time = 1559 ms
17-03-18 01:28:32.660 -07 000000474 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:28:32.700 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 01:28:32.700 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:28:32.700 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:32.700 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:32.700 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:32.700 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:32.700 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:28:32.700 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:32.710 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:32.710 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:28:32.710 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:32.710 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:28:32.720 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:28:32.720 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:28:32.720 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:28:32.770 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:28:33.070 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:28:33.070 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:28:33.070 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:28:33.070 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 01:28:33.110 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:28:33.110 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:28:33.110 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:28:33.200 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 01:28:33.200 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:33.200 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:28:33.200 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:28:33.210 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:33.210 -07 000000438 INF: Autofocus start
17-03-18 01:28:33.210 -07 000000438 INF: MeasureProfile start
17-03-18 01:28:33.210 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:33.220 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:28:33.220 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:28:33.220 -07 000000438 INF: MeasureProfile done
17-03-18 01:28:33.220 -07 000000438 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 01:28:33.220 -07 000000438 INF: Autofocus finished
17-03-18 01:28:33.420 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:28:33.420 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:28:33.420 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138375388129484. ----------
17-03-18 01:28:33.420 -07 000000610 INF: Cycle	87	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:28:33.430 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28722, sync = True, waitForSettling = True)
17-03-18 01:28:33.430 -07 000000610 INF: Z Motor: Moving to -0.131481 mm, started at -0.138375 mm, distance = 6.89 um
17-03-18 01:28:33.430 -07 000000610 INF: FPGA: Xmit ZDACW 28722\n [Z Motor]
17-03-18 01:28:33.430 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:28:33.440 -07 000000610 INF: FPGA: 'ZDACW 28722' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:33.440 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:33.440 -07 000000590 INF: FPGA: Recv ZDACR 28722
17-03-18 01:28:33.450 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:33.450 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:28:33.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:33.600 -07 000000502 INF: FPGA: Recv ZSGSRD 29760
17-03-18 01:28:33.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:33.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:33.610 -07 000000625 INF: FPGA: Recv ZSGSRD 29760
17-03-18 01:28:33.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:33.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:33.620 -07 000000487 INF: FPGA: Recv ZSGSRD 29752
17-03-18 01:28:33.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:33.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:33.630 -07 000000438 INF: FPGA: Recv ZSGSRD 29751
17-03-18 01:28:33.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:33.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:33.640 -07 000000474 INF: FPGA: Recv ZSGSRD 29766
17-03-18 01:28:33.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:33.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:33.650 -07 000000590 INF: FPGA: Recv ZSGSRD 29758
17-03-18 01:28:33.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:33.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:33.660 -07 000000502 INF: FPGA: Recv ZSGSRD 29754
17-03-18 01:28:33.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:33.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:33.670 -07 000000455 INF: FPGA: Recv ZSGSRD 29755
17-03-18 01:28:33.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:33.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:33.680 -07 000000474 INF: FPGA: Recv ZSGSRD 29754
17-03-18 01:28:33.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:33.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:33.700 -07 000000479 INF: FPGA: Recv ZSGSRD 29755
17-03-18 01:28:33.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:28:33.710 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:33.710 -07 000000625 INF: FPGA: Recv ZPIEZORD 25226
17-03-18 01:28:33.720 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:33.720 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.383 V. Piezo Error = -9.9 V.
17-03-18 01:28:33.720 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29756 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29755 (-130.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29751 (-130.7 uncal um), Max = 29766 (-130.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:28:33.720 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29756, posNoise = 10, negNoise = 5
17-03-18 01:28:33.720 -07 000000610 INF: Z Motor: After move to -0.131481, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:33.720 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 01:28:33.720 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:33.720 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:33.720 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:33.720 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:33.720 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:28:33.720 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:28:33.720 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:33.720 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:28:33.720 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:33.720 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:28:33.720 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:28:33.720 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:28:33.730 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:28:33.730 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:28:33.730 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:28:33.730 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:28:33.730 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:28:33.740 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:28:33.740 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:28:33.740 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:28:33.760 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28899 150\n [Camera]
17-03-18 01:28:33.950 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:28:34.350 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:28:34.350 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:28:34.350 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:34.350 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:34.350 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 01:28:34.350 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:28:34.350 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:28:34.350 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:34.350 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:34.350 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 01:28:34.460 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.973092,
17-03-18 01:28:34.540 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28899 775
17-03-18 01:28:34.690 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:28:34.730 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 01:28:34.730 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 01:28:34.730 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:34.730 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:34.730 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 01:28:34.730 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:28:34.730 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:34.740 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:28:34.740 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:34.740 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:28:34.880 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:28:34.880 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:28:34.880 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:34.880 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:28:34.880 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:34.880 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:28:34.880 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 01:28:34.880 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:35.020 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:35.020 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:28:35.070 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:28:35.070 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:28:35.070 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28899 150' command took 2 ms to send, 1302 ms to get response, and 1327 ms overall
17-03-18 01:28:35.070 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:28:35.070 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131482208501374. ------
17-03-18 01:28:35.070 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:35.070 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13791 mm
17-03-18 01:28:35.070 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:28:35.080 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:28:35.080 -07 000000455 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 01:28:35.080 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:35.080 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:35.080 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:28:35.080 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30126, sync = True, waitForSettling = False)
17-03-18 01:28:35.080 -07 000000502 INF: Z Motor: Moving to -0.137908 mm, started at -0.131482 mm, distance = -6.43 um
17-03-18 01:28:35.080 -07 000000487 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:28:35.090 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:28:35.090 -07 000000502 INF: FPGA: Xmit ZDACW 30126\n [Z Motor]
17-03-18 01:28:35.090 -07 000000455 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:35.090 -07 000000455 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:28:35.090 -07 000000455 INF: Y Motor: Moving 1342 steps-17
17-03-18 01:28:35.090 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:28:35.100 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:28:35.100 -07 000000502 INF: FPGA: 'ZDACW 30126' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:28:35.110 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:28:35.120 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:35.120 -07 000000487 INF: FPGA: Recv ZDACR 30126
17-03-18 01:28:35.130 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:28:35.130 -07 000000502 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:28:35.290 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 409 ms.
17-03-18 01:28:35.290 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:28:35.290 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:35.290 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:28:35.290 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 01:28:35.300 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:28:35.300 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 01:28:35.410 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:28:35.410 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:28:35.410 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:35.410 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:28:35.420 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 540 ms.
17-03-18 01:28:35.490 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 01:28:35.490 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 01:28:35.530 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:35.530 -07 000000467 INF: FPGA: Recv YRDPOS 131188
17-03-18 01:28:35.540 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:28:35.540 -07 000000455 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:35.540 -07 000000455 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 01:28:35.540 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.838 mm, average velocity = 2.101 mm/sec
17-03-18 01:28:36.490 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:36.490 -07 000000479 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:28:36.500 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:36.500 -07 000000455 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:36.520 -07 000000455 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:28:36.520 -07 000000455 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:28:36.520 -07 000000455 INF: Y Motor: Moved to 64.0571 after 1443 ms (table move)
17-03-18 01:28:36.520 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137908 mm (DAC = 30126)
17-03-18 01:28:36.520 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:36.530 -07 000000467 INF: FPGA: Recv ZSGSRD 30752
17-03-18 01:28:36.530 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:28:36.530 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:36.530 -07 000000479 INF: FPGA: Recv ZSGSRD 30758
17-03-18 01:28:36.540 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:28:36.540 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:36.540 -07 000000625 INF: FPGA: Recv ZSGSRD 30750
17-03-18 01:28:36.550 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:36.550 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:36.550 -07 000000487 INF: FPGA: Recv ZSGSRD 30754
17-03-18 01:28:36.560 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:36.560 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:36.560 -07 000000625 INF: FPGA: Recv ZSGSRD 30756
17-03-18 01:28:36.570 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:36.570 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:36.570 -07 000000487 INF: FPGA: Recv ZSGSRD 30756
17-03-18 01:28:36.580 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:36.580 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:36.580 -07 000000625 INF: FPGA: Recv ZSGSRD 30755
17-03-18 01:28:36.590 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:36.590 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:36.590 -07 000000629 INF: FPGA: Recv ZSGSRD 30762
17-03-18 01:28:36.600 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:36.600 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:36.600 -07 000000625 INF: FPGA: Recv ZSGSRD 30758
17-03-18 01:28:36.610 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:36.610 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:36.610 -07 000000487 INF: FPGA: Recv ZSGSRD 30761
17-03-18 01:28:36.620 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:36.620 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:36.620 -07 000000625 INF: FPGA: Recv ZPIEZORD 26549
17-03-18 01:28:36.630 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:36.630 -07 000000590 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.597 V. Piezo Error = -9.3 V.
17-03-18 01:28:36.630 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30756 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30756 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30750 (-137.1 uncal um), Max = 30762 (-137.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:28:36.630 -07 000000590 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30756, posNoise = 6, negNoise = 6
17-03-18 01:28:36.630 -07 000000590 INF: Z Motor: After move to -0.137908, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:36.630 -07 000000590 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms
17-03-18 01:28:36.630 -07 000000590 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 01:28:36.680 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 01:28:36.680 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:28:36.680 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:36.680 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:36.680 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:36.680 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:28:36.680 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:36.680 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:36.680 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:36.680 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:28:36.680 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:36.690 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:28:36.690 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:28:36.690 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 01:28:36.700 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:28:36.740 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:28:37.040 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:28:37.040 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:28:37.040 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:28:37.040 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617872936, 0x0, 559484976) start.
17-03-18 01:28:37.080 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:28:37.080 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 01:28:37.080 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:28:37.160 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617872936, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:28:37.160 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:37.160 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:28:37.160 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:28:37.180 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:37.180 -07 000000629 INF: Autofocus start
17-03-18 01:28:37.180 -07 000000629 INF: MeasureProfile start
17-03-18 01:28:37.180 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:37.190 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:28:37.190 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:28:37.190 -07 000000629 INF: MeasureProfile done
17-03-18 01:28:37.190 -07 000000629 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:28:37.190 -07 000000629 INF: Autofocus finished
17-03-18 01:28:37.260 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:28:37.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:28:37.390 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:28:37.390 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:28:37.390 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.137906420643135. ----------
17-03-18 01:28:37.390 -07 000000610 INF: Cycle	87	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:28:37.400 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28651, sync = True, waitForSettling = True)
17-03-18 01:28:37.400 -07 000000610 INF: Z Motor: Moving to -0.131156 mm, started at -0.137906 mm, distance = 6.75 um
17-03-18 01:28:37.400 -07 000000610 INF: FPGA: Xmit ZDACW 28651\n [Z Motor]
17-03-18 01:28:37.400 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:28:37.410 -07 000000610 INF: FPGA: 'ZDACW 28651' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:28:37.410 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:37.410 -07 000000625 INF: FPGA: Recv ZDACR 28651
17-03-18 01:28:37.420 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:37.420 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:28:37.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:37.570 -07 000000467 INF: FPGA: Recv ZSGSRD 29709
17-03-18 01:28:37.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:37.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:37.580 -07 000000479 INF: FPGA: Recv ZSGSRD 29706
17-03-18 01:28:37.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:37.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:37.590 -07 000000487 INF: FPGA: Recv ZSGSRD 29699
17-03-18 01:28:37.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:37.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:37.600 -07 000000629 INF: FPGA: Recv ZSGSRD 29706
17-03-18 01:28:37.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:37.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:37.610 -07 000000467 INF: FPGA: Recv ZSGSRD 29707
17-03-18 01:28:37.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:37.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:37.620 -07 000000629 INF: FPGA: Recv ZSGSRD 29708
17-03-18 01:28:37.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:37.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:37.630 -07 000000590 INF: FPGA: Recv ZSGSRD 29703
17-03-18 01:28:37.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:37.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:37.640 -07 000000455 INF: FPGA: Recv ZSGSRD 29708
17-03-18 01:28:37.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:37.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:37.650 -07 000000502 INF: FPGA: Recv ZSGSRD 29709
17-03-18 01:28:37.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:37.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:37.660 -07 000000479 INF: FPGA: Recv ZSGSRD 29703
17-03-18 01:28:37.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:37.670 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:37.670 -07 000000487 INF: FPGA: Recv ZPIEZORD 25146
17-03-18 01:28:37.680 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:37.680 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -10.0 V.
17-03-18 01:28:37.680 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29706 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29706 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29699 (-130.3 uncal um), Max = 29709 (-130.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:28:37.680 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29706, posNoise = 3, negNoise = 7
17-03-18 01:28:37.680 -07 000000610 INF: Z Motor: After move to -0.131156, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:37.680 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:28:37.680 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:37.680 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:37.680 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:37.680 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:37.680 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:28:37.680 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:37.680 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:28:37.680 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:28:37.680 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:28:37.680 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:28:37.680 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:28:37.680 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:28:37.690 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:28:37.690 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:28:37.690 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:28:37.690 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:28:37.700 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:28:37.700 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:28:37.700 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:28:37.700 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:28:37.700 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28827 150\n [Camera]
17-03-18 01:28:37.900 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:28:38.300 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 01:28:38.300 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 01:28:38.300 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:38.300 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 01:28:38.300 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 01:28:38.300 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:38.300 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:38.300 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:28:38.310 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:38.310 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:28:38.490 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28827 777
17-03-18 01:28:38.640 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:28:38.700 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:28:38.700 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:28:38.700 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:38.700 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:28:38.700 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:28:38.700 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:38.700 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:38.700 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:28:38.700 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:38.710 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:28:38.830 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:28:38.830 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:28:38.830 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:38.830 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:28:38.830 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:28:38.830 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:38.950 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:38.950 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:28:38.950 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:38.950 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:28:39.020 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:28:39.020 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:28:39.020 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28827 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:28:39.020 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:28:39.020 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131160997894286. ------
17-03-18 01:28:39.020 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:39.020 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13778 mm
17-03-18 01:28:39.020 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:28:39.020 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:28:39.030 -07 000000467 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 01:28:39.030 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:39.030 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:39.030 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:28:39.030 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30098, sync = True, waitForSettling = False)
17-03-18 01:28:39.030 -07 000000618 INF: Z Motor: Moving to -0.137780 mm, started at -0.131161 mm, distance = -6.62 um
17-03-18 01:28:39.030 -07 000000502 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:28:39.040 -07 000000618 INF: FPGA: Xmit ZDACW 30098\n [Z Motor]
17-03-18 01:28:39.040 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:39.040 -07 000000467 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:39.040 -07 000000467 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:28:39.040 -07 000000467 INF: Y Motor: Moving 1337 steps-12
17-03-18 01:28:39.040 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:28:39.050 -07 000000618 INF: FPGA: 'ZDACW 30098' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:28:39.050 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:28:39.060 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:28:39.070 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:39.070 -07 000000502 INF: FPGA: Recv ZDACR 30098
17-03-18 01:28:39.080 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:28:39.080 -07 000000618 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 01:28:39.250 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:28:39.250 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:28:39.340 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 01:28:39.340 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:28:39.340 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:39.340 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:39.340 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:28:39.340 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:28:39.340 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:39.350 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:39.350 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 01:28:39.350 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-18 01:28:39.430 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:28:39.430 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:28:39.470 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:39.480 -07 000000479 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:28:39.480 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:28:39.480 -07 000000467 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:39.480 -07 000000467 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:28:39.480 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-18 01:28:39.820 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.009895,
17-03-18 01:28:40.430 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:40.430 -07 000000455 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:28:40.440 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:40.440 -07 000000467 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:40.460 -07 000000467 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:28:40.460 -07 000000467 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:28:40.460 -07 000000467 INF: Y Motor: Moved to 64.8789 after 1437 ms (table move)
17-03-18 01:28:40.470 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137780 mm (DAC = 30098)
17-03-18 01:28:40.470 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:40.470 -07 000000590 INF: FPGA: Recv ZSGSRD 30743
17-03-18 01:28:40.480 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:28:40.480 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:40.480 -07 000000487 INF: FPGA: Recv ZSGSRD 30734
17-03-18 01:28:40.490 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:40.490 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:40.490 -07 000000487 INF: FPGA: Recv ZSGSRD 30738
17-03-18 01:28:40.500 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:40.500 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:40.500 -07 000000479 INF: FPGA: Recv ZSGSRD 30732
17-03-18 01:28:40.510 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:40.510 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:40.510 -07 000000590 INF: FPGA: Recv ZSGSRD 30741
17-03-18 01:28:40.520 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:40.520 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:40.520 -07 000000467 INF: FPGA: Recv ZSGSRD 30741
17-03-18 01:28:40.530 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:40.530 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:40.530 -07 000000590 INF: FPGA: Recv ZSGSRD 30735
17-03-18 01:28:40.540 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:40.540 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:40.540 -07 000000467 INF: FPGA: Recv ZSGSRD 30735
17-03-18 01:28:40.550 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:40.550 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:40.550 -07 000000487 INF: FPGA: Recv ZSGSRD 30731
17-03-18 01:28:40.560 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:40.560 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:40.560 -07 000000455 INF: FPGA: Recv ZSGSRD 30738
17-03-18 01:28:40.570 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:40.570 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:40.570 -07 000000487 INF: FPGA: Recv ZPIEZORD 26502
17-03-18 01:28:40.580 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:40.580 -07 000000625 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.593 V. Piezo Error = -9.3 V.
17-03-18 01:28:40.580 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30737 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30736 (-137.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30731 (-136.9 uncal um), Max = 30743 (-137.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:28:40.580 -07 000000625 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30737, posNoise = 6, negNoise = 6
17-03-18 01:28:40.580 -07 000000625 INF: Z Motor: After move to -0.137780, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:40.580 -07 000000625 INF: Z Motor: Settle wait time = 1440 ms, measure time = 109 ms (allowed 150 ms), total time = 1549 ms
17-03-18 01:28:40.580 -07 000000625 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:28:40.630 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 01:28:40.630 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:28:40.630 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:40.630 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:40.630 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:40.630 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:40.630 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:28:40.630 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:40.630 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:40.630 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:28:40.640 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:40.640 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:28:40.650 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:28:40.650 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:28:40.650 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:28:40.700 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 01:28:41.000 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 01:28:41.000 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 01:28:41.000 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:28:41.000 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 01:28:41.030 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:28:41.040 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:28:41.040 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:28:41.130 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:28:41.130 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:41.130 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:28:41.130 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:28:41.140 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:41.140 -07 000000467 INF: Autofocus start
17-03-18 01:28:41.140 -07 000000467 INF: MeasureProfile start
17-03-18 01:28:41.140 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:41.150 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:28:41.150 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:28:41.150 -07 000000467 INF: MeasureProfile done
17-03-18 01:28:41.150 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:28:41.150 -07 000000467 INF: Autofocus finished
17-03-18 01:28:41.350 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:28:41.350 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:28:41.350 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137784360612442. ----------
17-03-18 01:28:41.350 -07 000000610 INF: Cycle	87	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:28:41.360 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28622, sync = True, waitForSettling = True)
17-03-18 01:28:41.360 -07 000000610 INF: Z Motor: Moving to -0.131023 mm, started at -0.137784 mm, distance = 6.76 um
17-03-18 01:28:41.360 -07 000000610 INF: FPGA: Xmit ZDACW 28622\n [Z Motor]
17-03-18 01:28:41.360 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:28:41.370 -07 000000610 INF: FPGA: 'ZDACW 28622' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:28:41.370 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:41.370 -07 000000590 INF: FPGA: Recv ZDACR 28622
17-03-18 01:28:41.380 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:41.380 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:28:41.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:41.530 -07 000000608 INF: FPGA: Recv ZSGSRD 29691
17-03-18 01:28:41.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:41.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:41.540 -07 000000590 INF: FPGA: Recv ZSGSRD 29685
17-03-18 01:28:41.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:41.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:41.550 -07 000000467 INF: FPGA: Recv ZSGSRD 29685
17-03-18 01:28:41.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:41.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:41.560 -07 000000590 INF: FPGA: Recv ZSGSRD 29679
17-03-18 01:28:41.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:41.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:41.570 -07 000000467 INF: FPGA: Recv ZSGSRD 29687
17-03-18 01:28:41.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:41.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:41.580 -07 000000608 INF: FPGA: Recv ZSGSRD 29684
17-03-18 01:28:41.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:41.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:41.590 -07 000000591 INF: FPGA: Recv ZSGSRD 29685
17-03-18 01:28:41.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:41.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:41.600 -07 000000479 INF: FPGA: Recv ZSGSRD 29681
17-03-18 01:28:41.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:41.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:41.610 -07 000000591 INF: FPGA: Recv ZSGSRD 29693
17-03-18 01:28:41.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:41.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:41.620 -07 000000479 INF: FPGA: Recv ZSGSRD 29687
17-03-18 01:28:41.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:41.630 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:41.630 -07 000000591 INF: FPGA: Recv ZPIEZORD 25124
17-03-18 01:28:41.640 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:41.640 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -10.0 V.
17-03-18 01:28:41.640 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29686 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29685 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29679 (-130.2 uncal um), Max = 29693 (-130.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:28:41.640 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29686, posNoise = 7, negNoise = 7
17-03-18 01:28:41.640 -07 000000610 INF: Z Motor: After move to -0.131023, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:41.640 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:28:41.640 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:41.640 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:41.640 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:41.640 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:41.640 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:28:41.640 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:28:41.640 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:28:41.640 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:41.640 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:28:41.640 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:28:41.640 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:41.640 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:28:41.650 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:28:41.650 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:28:41.650 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:41.650 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:28:41.660 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:28:41.660 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:28:41.660 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:28:41.660 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:28:41.660 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28799 150\n [Camera]
17-03-18 01:28:41.860 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:28:42.250 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:28:42.250 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:28:42.250 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:42.250 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:28:42.250 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:28:42.250 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:42.260 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:42.260 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-18 01:28:42.260 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:42.260 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) start.
17-03-18 01:28:42.260 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:28:42.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:28:42.440 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28799 775
17-03-18 01:28:42.590 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:28:42.640 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 01:28:42.640 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 01:28:42.640 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:42.640 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 01:28:42.640 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 01:28:42.640 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:42.640 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:42.640 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:28:42.640 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:28:42.650 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:28:42.780 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:28:42.780 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:28:42.780 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:42.780 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:42.780 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:28:42.780 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:28:42.780 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:28:42.780 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:42.780 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:42.780 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 01:28:42.970 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:28:42.970 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:28:42.970 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28799 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-18 01:28:42.970 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:28:42.970 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131032513651451. ------
17-03-18 01:28:42.980 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13765 mm
17-03-18 01:28:42.980 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:28:42.980 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:42.980 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:28:42.980 -07 000000474 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 01:28:42.980 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30069, sync = True, waitForSettling = False)
17-03-18 01:28:42.980 -07 000000591 INF: Z Motor: Moving to -0.137647 mm, started at -0.131033 mm, distance = -6.61 um
17-03-18 01:28:42.980 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:42.990 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:28:42.990 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:42.990 -07 000000447 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:28:43.000 -07 000000591 INF: FPGA: Xmit ZDACW 30069\n [Z Motor]
17-03-18 01:28:43.000 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:28:43.000 -07 000000474 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:43.000 -07 000000474 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:28:43.000 -07 000000474 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:28:43.000 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:28:43.010 -07 000000591 INF: FPGA: 'ZDACW 30069' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:28:43.010 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:28:43.020 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:28:43.030 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:43.030 -07 000000461 INF: FPGA: Recv ZDACR 30069
17-03-18 01:28:43.040 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:28:43.040 -07 000000591 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 01:28:43.180 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:28:43.180 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:28:43.180 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:43.180 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:28:43.180 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:28:43.180 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:43.190 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:43.190 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:28:43.190 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:28:43.190 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:28:43.210 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:28:43.210 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:28:43.400 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 01:28:43.400 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 01:28:43.440 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:43.440 -07 000000608 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:28:43.450 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:28:43.450 -07 000000474 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:43.450 -07 000000474 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:28:43.450 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.844 mm, average velocity = 2.109 mm/sec
17-03-18 01:28:44.400 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:44.400 -07 000000487 INF: FPGA: Recv YRDPOS 134583
17-03-18 01:28:44.410 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:44.410 -07 000000474 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:44.430 -07 000000474 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:28:44.430 -07 000000474 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:28:44.430 -07 000000474 INF: Y Motor: Moved to 65.7144 after 1452 ms (table move)
17-03-18 01:28:44.440 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137647 mm (DAC = 30069)
17-03-18 01:28:44.460 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:44.460 -07 000000438 INF: FPGA: Recv ZSGSRD 30719
17-03-18 01:28:44.470 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 01:28:44.470 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:44.470 -07 000000487 INF: FPGA: Recv ZSGSRD 30722
17-03-18 01:28:44.480 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:44.500 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:44.500 -07 000000479 INF: FPGA: Recv ZSGSRD 30710
17-03-18 01:28:44.510 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:28:44.520 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:44.520 -07 000000438 INF: FPGA: Recv ZSGSRD 30712
17-03-18 01:28:44.530 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:28:44.530 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:44.530 -07 000000608 INF: FPGA: Recv ZSGSRD 30714
17-03-18 01:28:44.540 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:44.540 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:44.540 -07 000000438 INF: FPGA: Recv ZSGSRD 30721
17-03-18 01:28:44.550 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:44.550 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:44.550 -07 000000447 INF: FPGA: Recv ZSGSRD 30717
17-03-18 01:28:44.560 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:44.560 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:44.560 -07 000000438 INF: FPGA: Recv ZSGSRD 30719
17-03-18 01:28:44.570 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:44.570 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:44.570 -07 000000447 INF: FPGA: Recv ZSGSRD 30715
17-03-18 01:28:44.580 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:44.580 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:44.580 -07 000000479 INF: FPGA: Recv ZSGSRD 30717
17-03-18 01:28:44.590 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:44.590 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:44.590 -07 000000479 INF: FPGA: Recv ZPIEZORD 26498
17-03-18 01:28:44.600 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:44.600 -07 000000590 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.588 V. Piezo Error = -9.3 V.
17-03-18 01:28:44.600 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30717 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30717 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30710 (-136.8 uncal um), Max = 30722 (-136.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:28:44.600 -07 000000590 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30717, posNoise = 5, negNoise = 7
17-03-18 01:28:44.600 -07 000000590 INF: Z Motor: After move to -0.137647, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:44.600 -07 000000590 INF: Z Motor: Settle wait time = 1455 ms, measure time = 159 ms (allowed 150 ms), total time = 1614 ms
17-03-18 01:28:44.600 -07 000000590 INF: Z Motor: Warning: Actual position measuring time = 159 ms, longer than max expected time of 150 ms
17-03-18 01:28:44.600 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 01:28:44.600 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:28:44.600 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:44.600 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:44.600 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:44.600 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:28:44.600 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:44.600 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:44.600 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:44.600 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:28:44.610 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:44.610 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:28:44.610 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:28:44.610 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:28:44.620 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:28:44.660 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:28:44.960 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:28:44.960 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:28:44.960 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:28:45.080 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:28:45.080 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 01:28:45.080 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2640066888, 0x0, 559484976) start.
17-03-18 01:28:45.080 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 454 ms to get response, and 460 ms overall
17-03-18 01:28:45.180 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.99219,
17-03-18 01:28:45.190 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2640066888, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:28:45.190 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:45.190 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:28:45.190 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 230 ms.
17-03-18 01:28:45.280 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:45.280 -07 000000438 INF: Autofocus start
17-03-18 01:28:45.280 -07 000000438 INF: MeasureProfile start
17-03-18 01:28:45.280 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:45.290 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:28:45.290 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:28:45.290 -07 000000438 INF: MeasureProfile done
17-03-18 01:28:45.290 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:28:45.290 -07 000000438 INF: Autofocus finished
17-03-18 01:28:45.490 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:28:45.490 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 203 ms overall
17-03-18 01:28:45.490 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137655876369606. ----------
17-03-18 01:28:45.490 -07 000000610 INF: Cycle	87	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:28:45.500 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28577, sync = True, waitForSettling = True)
17-03-18 01:28:45.500 -07 000000610 INF: Z Motor: Moving to -0.130817 mm, started at -0.137656 mm, distance = 6.84 um
17-03-18 01:28:45.500 -07 000000610 INF: FPGA: Xmit ZDACW 28577\n [Z Motor]
17-03-18 01:28:45.500 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:28:45.510 -07 000000610 INF: FPGA: 'ZDACW 28577' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:45.510 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:45.510 -07 000000618 INF: FPGA: Recv ZDACR 28577
17-03-18 01:28:45.520 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:45.520 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:28:45.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:45.670 -07 000000447 INF: FPGA: Recv ZSGSRD 29647
17-03-18 01:28:45.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:45.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:45.680 -07 000000438 INF: FPGA: Recv ZSGSRD 29655
17-03-18 01:28:45.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:45.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:45.690 -07 000000479 INF: FPGA: Recv ZSGSRD 29648
17-03-18 01:28:45.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:45.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:45.700 -07 000000487 INF: FPGA: Recv ZSGSRD 29650
17-03-18 01:28:45.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:45.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:45.710 -07 000000590 INF: FPGA: Recv ZSGSRD 29653
17-03-18 01:28:45.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:45.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:45.720 -07 000000608 INF: FPGA: Recv ZSGSRD 29649
17-03-18 01:28:45.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:45.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:45.730 -07 000000447 INF: FPGA: Recv ZSGSRD 29654
17-03-18 01:28:45.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:45.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:45.740 -07 000000487 INF: FPGA: Recv ZSGSRD 29651
17-03-18 01:28:45.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:45.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:45.750 -07 000000447 INF: FPGA: Recv ZSGSRD 29652
17-03-18 01:28:45.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:45.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:45.760 -07 000000479 INF: FPGA: Recv ZSGSRD 29657
17-03-18 01:28:45.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:45.770 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:45.770 -07 000000608 INF: FPGA: Recv ZPIEZORD 25060
17-03-18 01:28:45.780 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:45.780 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -10.1 V.
17-03-18 01:28:45.780 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29652 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29652 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29647 (-130.0 uncal um), Max = 29657 (-130.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:28:45.780 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29652, posNoise = 5, negNoise = 5
17-03-18 01:28:45.780 -07 000000610 INF: Z Motor: After move to -0.130817, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:45.780 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:28:45.780 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:45.780 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:45.780 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:45.780 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:45.780 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:28:45.780 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:45.780 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:28:45.780 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:28:45.780 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:45.780 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:28:45.780 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:28:45.780 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:28:45.780 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:28:45.780 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:28:45.790 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:28:45.790 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:28:45.800 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:28:45.800 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:28:45.800 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:28:45.800 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:28:45.800 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28753 150\n [Camera]
17-03-18 01:28:46.000 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:28:46.390 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:28:46.390 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:28:46.390 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:46.400 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:46.400 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:28:46.400 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:28:46.400 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:28:46.400 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:46.400 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:46.400 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:28:46.590 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28753 775
17-03-18 01:28:46.740 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:28:46.780 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:28:46.780 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 01:28:46.780 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:46.780 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:46.790 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:28:46.790 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:28:46.790 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:46.790 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:46.790 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:28:46.790 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:28:46.920 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:28:46.920 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:28:46.920 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:46.930 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:28:46.930 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:28:46.930 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:46.930 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:46.930 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:28:47.040 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:47.040 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 01:28:47.120 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:28:47.120 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:28:47.120 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28753 150' command took 2 ms to send, 1301 ms to get response, and 1313 ms overall
17-03-18 01:28:47.120 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:28:47.120 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130814090438631. ------
17-03-18 01:28:47.120 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:47.120 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13722 mm
17-03-18 01:28:47.120 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:28:47.120 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:47.120 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 29976, sync = True, waitForSettling = False)
17-03-18 01:28:47.130 -07 000000487 INF: Z Motor: Moving to -0.137221 mm, started at -0.130814 mm, distance = -6.41 um
17-03-18 01:28:47.130 -07 000000487 INF: FPGA: Xmit ZDACW 29976\n [Z Motor]
17-03-18 01:28:47.130 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:28:47.130 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:28:47.130 -07 000000625 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 01:28:47.130 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:28:47.140 -07 000000487 INF: FPGA: 'ZDACW 29976' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:47.140 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:28:47.150 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:47.150 -07 000000608 INF: FPGA: Recv YRDPOS 134583
17-03-18 01:28:47.160 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:28:47.160 -07 000000625 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:47.160 -07 000000625 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:28:47.160 -07 000000625 INF: Y Motor: Moving 1341 steps-18
17-03-18 01:28:47.160 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:47.160 -07 000000618 INF: FPGA: Recv ZDACR 29976
17-03-18 01:28:47.170 -07 000000487 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:28:47.170 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:28:47.170 -07 000000487 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 01:28:47.260 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:28:47.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:28:47.320 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:28:47.320 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:28:47.320 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:47.320 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:47.330 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:28:47.340 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:28:47.340 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 01:28:47.440 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:28:47.440 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:28:47.440 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:47.440 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:28:47.440 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 01:28:47.550 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 01:28:47.550 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 371 ms to get response, and 390 ms overall
17-03-18 01:28:47.590 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:47.590 -07 000000479 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:28:47.600 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:28:47.600 -07 000000625 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:47.600 -07 000000625 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:28:47.600 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.838 mm, average velocity = 2.149 mm/sec
17-03-18 01:28:48.550 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:48.550 -07 000000487 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:28:48.560 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:48.560 -07 000000625 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:48.580 -07 000000625 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:28:48.580 -07 000000625 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:28:48.580 -07 000000625 INF: Y Motor: Moved to 66.5391 after 1457 ms (table move)
17-03-18 01:28:48.590 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137221 mm (DAC = 29976)
17-03-18 01:28:48.590 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:48.590 -07 000000447 INF: FPGA: Recv ZSGSRD 30653
17-03-18 01:28:48.600 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:28:48.600 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:48.600 -07 000000447 INF: FPGA: Recv ZSGSRD 30654
17-03-18 01:28:48.610 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:48.610 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:48.610 -07 000000629 INF: FPGA: Recv ZSGSRD 30640
17-03-18 01:28:48.620 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:48.620 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:48.620 -07 000000629 INF: FPGA: Recv ZSGSRD 30646
17-03-18 01:28:48.630 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:48.630 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:48.630 -07 000000474 INF: FPGA: Recv ZSGSRD 30649
17-03-18 01:28:48.640 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:48.640 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:48.640 -07 000000424 INF: FPGA: Recv ZSGSRD 30652
17-03-18 01:28:48.650 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:48.650 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:48.650 -07 000000424 INF: FPGA: Recv ZSGSRD 30659
17-03-18 01:28:48.660 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:48.660 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:48.660 -07 000000424 INF: FPGA: Recv ZSGSRD 30649
17-03-18 01:28:48.670 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:48.670 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:48.670 -07 000000424 INF: FPGA: Recv ZSGSRD 30652
17-03-18 01:28:48.680 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:48.680 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:48.680 -07 000000424 INF: FPGA: Recv ZSGSRD 30648
17-03-18 01:28:48.690 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:48.690 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:48.690 -07 000000474 INF: FPGA: Recv ZPIEZORD 26426
17-03-18 01:28:48.700 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:48.700 -07 000000438 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.574 V. Piezo Error = -9.3 V.
17-03-18 01:28:48.700 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30650 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30650 (-136.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30640 (-136.4 uncal um), Max = 30659 (-136.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:28:48.700 -07 000000438 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30650, posNoise = 9, negNoise = 10
17-03-18 01:28:48.700 -07 000000438 INF: Z Motor: After move to -0.137221, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:48.700 -07 000000438 INF: Z Motor: Settle wait time = 1463 ms, measure time = 107 ms (allowed 150 ms), total time = 1570 ms
17-03-18 01:28:48.700 -07 000000438 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:28:48.750 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 01:28:48.750 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:28:48.750 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:48.750 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:48.750 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:48.750 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:48.750 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:28:48.750 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:48.760 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:48.760 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:28:48.760 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:48.760 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:28:48.770 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:28:48.770 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:28:48.770 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:28:48.810 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:28:49.110 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:28:49.110 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:28:49.110 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:28:49.120 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 01:28:49.150 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:28:49.150 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 01:28:49.150 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:28:49.230 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:28:49.230 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:49.230 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:28:49.230 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:28:49.250 -07 000000438 INF: Autofocus start
17-03-18 01:28:49.250 -07 000000438 INF: MeasureProfile start
17-03-18 01:28:49.250 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:49.250 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:49.260 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:28:49.260 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:28:49.260 -07 000000438 INF: MeasureProfile done
17-03-18 01:28:49.260 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:28:49.260 -07 000000438 INF: Autofocus finished
17-03-18 01:28:49.460 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:28:49.460 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:28:49.470 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137225454156108. ----------
17-03-18 01:28:49.470 -07 000000610 INF: Cycle	87	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:28:49.470 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28483, sync = True, waitForSettling = True)
17-03-18 01:28:49.470 -07 000000610 INF: Z Motor: Moving to -0.130387 mm, started at -0.137225 mm, distance = 6.84 um
17-03-18 01:28:49.470 -07 000000610 INF: FPGA: Xmit ZDACW 28483\n [Z Motor]
17-03-18 01:28:49.470 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:28:49.480 -07 000000610 INF: FPGA: 'ZDACW 28483' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:28:49.480 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:49.480 -07 000000474 INF: FPGA: Recv ZDACR 28483
17-03-18 01:28:49.490 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:49.490 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:28:49.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:49.640 -07 000000438 INF: FPGA: Recv ZSGSRD 29583
17-03-18 01:28:49.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:49.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:49.650 -07 000000474 INF: FPGA: Recv ZSGSRD 29591
17-03-18 01:28:49.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:49.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:49.660 -07 000000424 INF: FPGA: Recv ZSGSRD 29589
17-03-18 01:28:49.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:49.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:49.670 -07 000000424 INF: FPGA: Recv ZSGSRD 29582
17-03-18 01:28:49.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:49.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:49.680 -07 000000438 INF: FPGA: Recv ZSGSRD 29588
17-03-18 01:28:49.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:49.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:49.690 -07 000000424 INF: FPGA: Recv ZSGSRD 29585
17-03-18 01:28:49.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:49.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:49.700 -07 000000474 INF: FPGA: Recv ZSGSRD 29591
17-03-18 01:28:49.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:49.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:49.710 -07 000000438 INF: FPGA: Recv ZSGSRD 29585
17-03-18 01:28:49.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:49.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:49.720 -07 000000474 INF: FPGA: Recv ZSGSRD 29587
17-03-18 01:28:49.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:49.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:49.730 -07 000000424 INF: FPGA: Recv ZSGSRD 29585
17-03-18 01:28:49.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:49.740 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:49.740 -07 000000474 INF: FPGA: Recv ZPIEZORD 24962
17-03-18 01:28:49.750 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:49.750 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.346 V. Piezo Error = -10.1 V.
17-03-18 01:28:49.750 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29587 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29586 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29582 (-129.6 uncal um), Max = 29591 (-129.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:28:49.750 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29587, posNoise = 4, negNoise = 5
17-03-18 01:28:49.750 -07 000000610 INF: Z Motor: After move to -0.130387, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:49.750 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:28:49.750 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:49.750 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:49.750 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:49.750 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:49.750 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:28:49.750 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:28:49.750 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:28:49.750 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:49.750 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:28:49.750 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:28:49.750 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:49.750 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:28:49.760 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:28:49.760 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:28:49.760 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:49.760 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:28:49.770 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:28:49.770 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:28:49.770 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:28:49.770 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:28:49.770 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28660 150\n [Camera]
17-03-18 01:28:49.970 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:28:50.360 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:28:50.360 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:28:50.370 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:28:50.370 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:28:50.370 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:50.370 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:50.370 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:50.370 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:28:50.370 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:50.370 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:28:50.540 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.997626,
17-03-18 01:28:50.560 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28660 775
17-03-18 01:28:50.710 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:28:50.760 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:28:50.760 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:28:50.760 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:50.760 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:50.770 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:28:50.770 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:28:50.770 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:50.770 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:50.770 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:28:50.770 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:28:50.890 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:28:50.900 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:28:50.900 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:50.900 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:50.900 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:28:50.900 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:28:50.900 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:28:50.900 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:50.900 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:50.900 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:28:51.090 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:28:51.090 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:28:51.090 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28660 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-18 01:28:51.090 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:28:51.090 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130396516649416. ------
17-03-18 01:28:51.100 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13729 mm
17-03-18 01:28:51.100 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:28:51.100 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:51.100 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:51.100 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29991, sync = True, waitForSettling = False)
17-03-18 01:28:51.100 -07 000000455 INF: Z Motor: Moving to -0.137290 mm, started at -0.130397 mm, distance = -6.89 um
17-03-18 01:28:51.100 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:28:51.100 -07 000000461 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 01:28:51.110 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:28:51.110 -07 000000455 INF: FPGA: Xmit ZDACW 29991\n [Z Motor]
17-03-18 01:28:51.110 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:28:51.120 -07 000000455 INF: FPGA: 'ZDACW 29991' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:28:51.120 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:51.120 -07 000000467 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:28:51.130 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:28:51.130 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:28:51.130 -07 000000461 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:51.130 -07 000000461 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:28:51.130 -07 000000461 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:28:51.140 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:51.140 -07 000000502 INF: FPGA: Recv ZDACR 29991
17-03-18 01:28:51.150 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:28:51.150 -07 000000455 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 01:28:51.150 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:28:51.300 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:28:51.300 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:28:51.300 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:51.300 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:28:51.300 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:28:51.300 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:51.300 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:51.300 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:28:51.300 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:51.310 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:28:51.330 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:28:51.330 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:28:51.520 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:28:51.520 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 01:28:51.570 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:51.570 -07 000000424 INF: FPGA: Recv YRDPOS 137977
17-03-18 01:28:51.580 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:28:51.580 -07 000000461 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:51.580 -07 000000461 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 01:28:51.580 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.119 mm/sec
17-03-18 01:28:52.260 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:28:52.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:28:52.530 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:52.530 -07 000000424 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:28:52.540 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:52.540 -07 000000461 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:52.560 -07 000000461 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:28:52.560 -07 000000461 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:28:52.560 -07 000000461 INF: Y Motor: Moved to 67.3721 after 1461 ms (table move)
17-03-18 01:28:52.570 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137290 mm (DAC = 29991)
17-03-18 01:28:52.570 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:52.570 -07 000000424 INF: FPGA: Recv ZSGSRD 30660
17-03-18 01:28:52.580 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:52.580 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:52.580 -07 000000424 INF: FPGA: Recv ZSGSRD 30666
17-03-18 01:28:52.590 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:52.590 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:52.590 -07 000000424 INF: FPGA: Recv ZSGSRD 30665
17-03-18 01:28:52.600 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:52.600 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:52.600 -07 000000424 INF: FPGA: Recv ZSGSRD 30670
17-03-18 01:28:52.610 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:52.610 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:52.610 -07 000000461 INF: FPGA: Recv ZSGSRD 30657
17-03-18 01:28:52.620 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:52.620 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:52.620 -07 000000461 INF: FPGA: Recv ZSGSRD 30657
17-03-18 01:28:52.630 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:52.630 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:52.630 -07 000000461 INF: FPGA: Recv ZSGSRD 30669
17-03-18 01:28:52.640 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:52.640 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:52.640 -07 000000461 INF: FPGA: Recv ZSGSRD 30651
17-03-18 01:28:52.650 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:52.650 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:52.650 -07 000000424 INF: FPGA: Recv ZSGSRD 30660
17-03-18 01:28:52.660 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:52.660 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:52.660 -07 000000461 INF: FPGA: Recv ZSGSRD 30660
17-03-18 01:28:52.670 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:52.670 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:52.670 -07 000000461 INF: FPGA: Recv ZPIEZORD 26463
17-03-18 01:28:52.680 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:52.680 -07 000000591 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -9.2 V.
17-03-18 01:28:52.680 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30662 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30660 (-136.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30651 (-136.4 uncal um), Max = 30670 (-136.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 01:28:52.680 -07 000000591 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30662, posNoise = 8, negNoise = 11
17-03-18 01:28:52.680 -07 000000591 INF: Z Motor: After move to -0.137290, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:52.680 -07 000000591 INF: Z Motor: Settle wait time = 1465 ms, measure time = 111 ms (allowed 150 ms), total time = 1576 ms
17-03-18 01:28:52.680 -07 000000591 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:28:52.720 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 01:28:52.720 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:28:52.720 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:52.720 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:52.720 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:52.720 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:28:52.720 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:52.720 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:52.720 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:52.720 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:28:52.720 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:52.720 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:28:52.730 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 01:28:52.730 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:28:52.740 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:28:52.780 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:28:53.080 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:28:53.080 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:28:53.090 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:28:53.090 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) start.
17-03-18 01:28:53.120 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:28:53.120 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:28:53.120 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:28:53.200 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:28:53.200 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:53.200 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:28:53.200 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 01:28:53.220 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:53.220 -07 000000424 INF: Autofocus start
17-03-18 01:28:53.220 -07 000000424 INF: MeasureProfile start
17-03-18 01:28:53.220 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:53.230 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:28:53.230 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:28:53.230 -07 000000424 INF: MeasureProfile done
17-03-18 01:28:53.230 -07 000000424 INF: X=-7  Z correction [um]=-0.03747771
17-03-18 01:28:53.230 -07 000000424 INF: Autofocus finished
17-03-18 01:28:53.430 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:28:53.430 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:28:53.430 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137302544701809. ----------
17-03-18 01:28:53.430 -07 000000610 INF: Cycle	87	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:28:53.440 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28495, sync = True, waitForSettling = True)
17-03-18 01:28:53.440 -07 000000610 INF: Z Motor: Moving to -0.130442 mm, started at -0.137303 mm, distance = 6.86 um
17-03-18 01:28:53.440 -07 000000610 INF: FPGA: Xmit ZDACW 28495\n [Z Motor]
17-03-18 01:28:53.440 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:28:53.450 -07 000000610 INF: FPGA: 'ZDACW 28495' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:53.450 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:53.450 -07 000000479 INF: FPGA: Recv ZDACR 28495
17-03-18 01:28:53.460 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:53.460 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:28:53.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:53.610 -07 000000625 INF: FPGA: Recv ZSGSRD 29602
17-03-18 01:28:53.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:53.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:53.620 -07 000000591 INF: FPGA: Recv ZSGSRD 29596
17-03-18 01:28:53.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:28:53.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:53.630 -07 000000461 INF: FPGA: Recv ZSGSRD 29595
17-03-18 01:28:53.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:53.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:53.640 -07 000000424 INF: FPGA: Recv ZSGSRD 29592
17-03-18 01:28:53.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:53.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:53.650 -07 000000487 INF: FPGA: Recv ZSGSRD 29594
17-03-18 01:28:53.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:53.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:53.660 -07 000000625 INF: FPGA: Recv ZSGSRD 29596
17-03-18 01:28:53.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:53.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:53.670 -07 000000461 INF: FPGA: Recv ZSGSRD 29588
17-03-18 01:28:53.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:53.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:53.680 -07 000000625 INF: FPGA: Recv ZSGSRD 29593
17-03-18 01:28:53.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:53.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:53.690 -07 000000591 INF: FPGA: Recv ZSGSRD 29591
17-03-18 01:28:53.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:53.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:53.700 -07 000000625 INF: FPGA: Recv ZSGSRD 29598
17-03-18 01:28:53.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:53.710 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:53.710 -07 000000424 INF: FPGA: Recv ZPIEZORD 25046
17-03-18 01:28:53.720 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:53.720 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -10.0 V.
17-03-18 01:28:53.720 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29594 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29594 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29588 (-129.6 uncal um), Max = 29602 (-129.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:28:53.720 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29594, posNoise = 8, negNoise = 6
17-03-18 01:28:53.720 -07 000000610 INF: Z Motor: After move to -0.130442, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:53.720 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:28:53.720 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:53.720 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:53.720 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:53.720 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:28:53.720 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:53.720 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:53.720 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:28:53.720 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:28:53.720 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:28:53.720 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:28:53.720 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:28:53.720 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:28:53.720 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:28:53.720 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:28:53.720 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:28:53.730 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:28:53.740 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 01:28:53.740 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:28:53.740 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 01:28:53.740 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:28:53.740 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28672 150\n [Camera]
17-03-18 01:28:53.940 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:28:54.330 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:28:54.330 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:28:54.330 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:54.330 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:54.330 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:28:54.340 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:28:54.340 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:28:54.340 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:54.340 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:54.340 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:28:54.530 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28672 775
17-03-18 01:28:54.670 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:28:54.730 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:28:54.730 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:28:54.730 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:54.740 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:28:54.740 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:28:54.740 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:54.740 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:54.740 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:28:54.740 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:54.750 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:28:54.860 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:28:54.860 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:28:54.860 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:54.860 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:54.860 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:28:54.870 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:28:54.870 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:28:54.870 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:54.870 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:54.870 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:28:55.050 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:28:55.060 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:28:55.060 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28672 150' command took 2 ms to send, 1310 ms to get response, and 1313 ms overall
17-03-18 01:28:55.060 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:28:55.060 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130441486134409. ------
17-03-18 01:28:55.060 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:55.060 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13681 mm
17-03-18 01:28:55.060 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:28:55.060 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:55.060 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 29887, sync = True, waitForSettling = False)
17-03-18 01:28:55.070 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:28:55.070 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:28:55.070 -07 000000487 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 01:28:55.070 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:28:55.070 -07 000000479 INF: Z Motor: Moving to -0.136814 mm, started at -0.130441 mm, distance = -6.37 um
17-03-18 01:28:55.080 -07 000000479 INF: FPGA: Xmit ZDACW 29887\n [Z Motor]
17-03-18 01:28:55.080 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:28:55.090 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:55.090 -07 000000479 INF: FPGA: 'ZDACW 29887' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:28:55.090 -07 000000629 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:28:55.100 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:28:55.100 -07 000000487 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:55.100 -07 000000487 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:28:55.100 -07 000000487 INF: Y Motor: Moving 1345 steps-23
17-03-18 01:28:55.100 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:55.100 -07 000000629 INF: FPGA: Recv ZDACR 29887
17-03-18 01:28:55.110 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:28:55.110 -07 000000479 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 01:28:55.110 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:28:55.260 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:28:55.260 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:28:55.260 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:55.270 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:28:55.270 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:28:55.270 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:55.270 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:28:55.270 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:28:55.270 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:28:55.280 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:28:55.950 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:28:55.950 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:28:55.950 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 870 ms to get response, and 880 ms overall
17-03-18 01:28:55.950 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 830 ms to get response, and 850 ms overall
17-03-18 01:28:55.990 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:55.990 -07 000000590 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:28:56.000 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:28:56.000 -07 000000487 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:56.000 -07 000000487 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 01:28:56.000 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 851 ms, distance = 0.841 mm, average velocity = 0.988 mm/sec
17-03-18 01:28:56.260 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.983999,
17-03-18 01:28:56.950 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:56.950 -07 000000474 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:28:56.960 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:56.960 -07 000000487 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:56.980 -07 000000487 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:28:56.980 -07 000000487 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:28:56.980 -07 000000487 INF: Y Motor: Moved to 68.2056 after 1916 ms (table move)
17-03-18 01:28:56.990 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136814 mm (DAC = 29887)
17-03-18 01:28:56.990 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:56.990 -07 000000625 INF: FPGA: Recv ZSGSRD 30591
17-03-18 01:28:57.000 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:57.000 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:57.000 -07 000000590 INF: FPGA: Recv ZSGSRD 30584
17-03-18 01:28:57.010 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:57.010 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:57.010 -07 000000474 INF: FPGA: Recv ZSGSRD 30585
17-03-18 01:28:57.020 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:57.020 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:57.020 -07 000000625 INF: FPGA: Recv ZSGSRD 30590
17-03-18 01:28:57.030 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:57.030 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:57.030 -07 000000591 INF: FPGA: Recv ZSGSRD 30589
17-03-18 01:28:57.040 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:57.040 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:57.040 -07 000000590 INF: FPGA: Recv ZSGSRD 30587
17-03-18 01:28:57.050 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:57.050 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:57.050 -07 000000591 INF: FPGA: Recv ZSGSRD 30589
17-03-18 01:28:57.060 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:57.060 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:57.060 -07 000000590 INF: FPGA: Recv ZSGSRD 30580
17-03-18 01:28:57.070 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:57.070 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:57.070 -07 000000591 INF: FPGA: Recv ZSGSRD 30587
17-03-18 01:28:57.080 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:57.080 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:57.080 -07 000000590 INF: FPGA: Recv ZSGSRD 30589
17-03-18 01:28:57.090 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:57.090 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:57.090 -07 000000474 INF: FPGA: Recv ZPIEZORD 26354
17-03-18 01:28:57.100 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:57.100 -07 000000461 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -9.3 V.
17-03-18 01:28:57.100 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30587 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30588 (-136.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30580 (-136.0 uncal um), Max = 30591 (-136.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:28:57.100 -07 000000461 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30587, posNoise = 4, negNoise = 7
17-03-18 01:28:57.100 -07 000000461 INF: Z Motor: After move to -0.136814, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:57.100 -07 000000461 INF: Z Motor: Settle wait time = 1919 ms, measure time = 110 ms (allowed 150 ms), total time = 2029 ms
17-03-18 01:28:57.100 -07 000000461 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:28:57.140 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2073 ms
17-03-18 01:28:57.140 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:28:57.140 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:57.140 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:57.140 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:57.140 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:28:57.140 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:57.140 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:57.140 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:28:57.140 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:28:57.150 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:28:57.150 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:28:57.150 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:28:57.150 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:28:57.160 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:28:57.200 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 01:28:57.260 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:28:57.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:28:57.500 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 01:28:57.500 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 01:28:57.500 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:28:57.500 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 663285856, 0x0, 559484976) start.
17-03-18 01:28:57.540 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:28:57.540 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:28:57.540 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 01:28:57.620 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 663285856, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:28:57.620 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:57.620 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:28:57.620 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:28:57.640 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:57.640 -07 000000461 INF: Autofocus start
17-03-18 01:28:57.640 -07 000000461 INF: MeasureProfile start
17-03-18 01:28:57.640 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:57.650 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:28:57.650 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:28:57.650 -07 000000461 INF: MeasureProfile done
17-03-18 01:28:57.650 -07 000000461 INF: X=-1  Z correction [um]=-0.008270801
17-03-18 01:28:57.650 -07 000000461 INF: Autofocus finished
17-03-18 01:28:57.850 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:28:57.850 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:28:57.850 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136820728791177. ----------
17-03-18 01:28:57.850 -07 000000610 INF: Cycle	87	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:28:57.860 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28397, sync = True, waitForSettling = True)
17-03-18 01:28:57.860 -07 000000610 INF: Z Motor: Moving to -0.129993 mm, started at -0.136821 mm, distance = 6.83 um
17-03-18 01:28:57.860 -07 000000610 INF: FPGA: Xmit ZDACW 28397\n [Z Motor]
17-03-18 01:28:57.860 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:28:57.870 -07 000000610 INF: FPGA: 'ZDACW 28397' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:28:57.870 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:57.870 -07 000000474 INF: FPGA: Recv ZDACR 28397
17-03-18 01:28:57.880 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:57.880 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:28:58.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:58.030 -07 000000455 INF: FPGA: Recv ZSGSRD 29526
17-03-18 01:28:58.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:28:58.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:58.040 -07 000000590 INF: FPGA: Recv ZSGSRD 29526
17-03-18 01:28:58.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:58.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:58.050 -07 000000474 INF: FPGA: Recv ZSGSRD 29527
17-03-18 01:28:58.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:58.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:58.060 -07 000000625 INF: FPGA: Recv ZSGSRD 29525
17-03-18 01:28:58.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:58.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:58.070 -07 000000455 INF: FPGA: Recv ZSGSRD 29524
17-03-18 01:28:58.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:58.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:58.080 -07 000000467 INF: FPGA: Recv ZSGSRD 29525
17-03-18 01:28:58.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:58.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:58.090 -07 000000590 INF: FPGA: Recv ZSGSRD 29525
17-03-18 01:28:58.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:58.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:58.100 -07 000000461 INF: FPGA: Recv ZSGSRD 29524
17-03-18 01:28:58.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:58.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:58.110 -07 000000625 INF: FPGA: Recv ZSGSRD 29524
17-03-18 01:28:58.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:58.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:28:58.120 -07 000000461 INF: FPGA: Recv ZSGSRD 29520
17-03-18 01:28:58.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:58.130 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:28:58.130 -07 000000591 INF: FPGA: Recv ZPIEZORD 24950
17-03-18 01:28:58.140 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:58.140 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -10.0 V.
17-03-18 01:28:58.140 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29525 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29525 (-129.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29520 (-129.2 uncal um), Max = 29527 (-129.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:28:58.140 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29525, posNoise = 2, negNoise = 5
17-03-18 01:28:58.140 -07 000000610 INF: Z Motor: After move to -0.129993, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:28:58.140 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:28:58.140 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:28:58.140 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:28:58.140 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:28:58.140 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:28:58.140 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:28:58.140 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:28:58.140 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:28:58.140 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:28:58.140 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:28:58.140 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:28:58.140 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:28:58.140 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:28:58.150 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:28:58.150 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:28:58.150 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:28:58.150 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:28:58.160 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:28:58.160 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:28:58.160 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:28:58.160 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:28:58.170 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28574 150\n [Camera]
17-03-18 01:28:58.370 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:28:58.760 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:28:58.760 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:28:58.760 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:58.760 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:58.760 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:28:58.760 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:28:58.760 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:28:58.760 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:58.760 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:58.760 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:28:58.950 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28574 775
17-03-18 01:28:59.100 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:28:59.150 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:28:59.150 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:28:59.150 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:59.150 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:28:59.160 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:28:59.160 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:59.160 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:28:59.160 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:59.160 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:28:59.170 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:28:59.290 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:28:59.290 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:28:59.290 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:28:59.290 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:28:59.290 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:28:59.290 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:28:59.290 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:28:59.290 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:28:59.290 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:28:59.290 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 01:28:59.480 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:28:59.480 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:28:59.480 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28574 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:28:59.480 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:28:59.480 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.129998215496627. ------
17-03-18 01:28:59.480 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:28:59.480 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13663 mm
17-03-18 01:28:59.480 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:28:59.490 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:28:59.490 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-18 01:28:59.490 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29847, sync = True, waitForSettling = False)
17-03-18 01:28:59.490 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:28:59.490 -07 000000591 INF: Z Motor: Moving to -0.136631 mm, started at -0.129998 mm, distance = -6.63 um
17-03-18 01:28:59.490 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:28:59.490 -07 000000455 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 01:28:59.500 -07 000000591 INF: FPGA: Xmit ZDACW 29847\n [Z Motor]
17-03-18 01:28:59.500 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 01:28:59.510 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:59.510 -07 000000591 INF: FPGA: 'ZDACW 29847' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:28:59.510 -07 000000461 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:28:59.520 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:28:59.520 -07 000000455 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:59.520 -07 000000455 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:28:59.520 -07 000000455 INF: Y Motor: Moving 1339 steps-14
17-03-18 01:28:59.520 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:28:59.520 -07 000000618 INF: FPGA: Recv ZDACR 29847
17-03-18 01:28:59.530 -07 000000591 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:28:59.530 -07 000000591 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 01:28:59.530 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:28:59.690 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:28:59.690 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:28:59.690 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:59.690 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:28:59.690 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 203 ms overall
17-03-18 01:28:59.700 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:28:59.700 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:28:59.700 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:28:59.700 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:28:59.700 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:28:59.700 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:28:59.710 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:28:59.900 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 01:28:59.900 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:28:59.950 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:28:59.950 -07 000000629 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:28:59.960 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:28:59.960 -07 000000455 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:28:59.960 -07 000000455 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:28:59.960 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec
17-03-18 01:29:00.910 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:00.910 -07 000000438 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:29:00.920 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:00.920 -07 000000455 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:00.940 -07 000000455 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:29:00.940 -07 000000455 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:29:00.940 -07 000000455 INF: Y Motor: Moved to 69.0273 after 1453 ms (table move)
17-03-18 01:29:00.950 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136631 mm (DAC = 29847)
17-03-18 01:29:00.960 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:00.960 -07 000000447 INF: FPGA: Recv ZSGSRD 30564
17-03-18 01:29:00.970 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:29:00.970 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:00.970 -07 000000618 INF: FPGA: Recv ZSGSRD 30561
17-03-18 01:29:00.980 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:00.980 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:00.980 -07 000000502 INF: FPGA: Recv ZSGSRD 30555
17-03-18 01:29:00.990 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:00.990 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:00.990 -07 000000629 INF: FPGA: Recv ZSGSRD 30564
17-03-18 01:29:01.000 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:01.000 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:01.000 -07 000000590 INF: FPGA: Recv ZSGSRD 30556
17-03-18 01:29:01.010 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:01.010 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:01.010 -07 000000625 INF: FPGA: Recv ZSGSRD 30555
17-03-18 01:29:01.020 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:01.020 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:01.020 -07 000000590 INF: FPGA: Recv ZSGSRD 30556
17-03-18 01:29:01.030 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:01.030 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:01.030 -07 000000625 INF: FPGA: Recv ZSGSRD 30559
17-03-18 01:29:01.040 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:01.040 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:01.040 -07 000000590 INF: FPGA: Recv ZSGSRD 30555
17-03-18 01:29:01.050 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:01.050 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:01.050 -07 000000625 INF: FPGA: Recv ZSGSRD 30561
17-03-18 01:29:01.060 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:01.060 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:01.060 -07 000000618 INF: FPGA: Recv ZPIEZORD 26336
17-03-18 01:29:01.070 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:01.070 -07 000000467 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.554 V. Piezo Error = -9.3 V.
17-03-18 01:29:01.070 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30559 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30558 (-135.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30555 (-135.8 uncal um), Max = 30564 (-135.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:29:01.070 -07 000000467 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30559, posNoise = 5, negNoise = 4
17-03-18 01:29:01.070 -07 000000467 INF: Z Motor: After move to -0.136631, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:01.070 -07 000000467 INF: Z Motor: Settle wait time = 1457 ms, measure time = 119 ms (allowed 150 ms), total time = 1576 ms
17-03-18 01:29:01.070 -07 000000467 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-18 01:29:01.110 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 01:29:01.110 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:29:01.110 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:01.110 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:01.110 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:01.110 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:01.110 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:29:01.110 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:01.110 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:29:01.110 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:29:01.120 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:29:01.120 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:29:01.120 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:29:01.120 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:29:01.130 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:29:01.170 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:29:01.470 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:29:01.470 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:29:01.470 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:29:01.470 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 01:29:01.510 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:29:01.510 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:29:01.510 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 01:29:01.590 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:29:01.590 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:01.590 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:29:01.590 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:29:01.610 -07 000000467 INF: Autofocus start
17-03-18 01:29:01.610 -07 000000467 INF: MeasureProfile start
17-03-18 01:29:01.620 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:29:01.620 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.986717,
17-03-18 01:29:01.620 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:29:01.620 -07 000000467 INF: MeasureProfile done
17-03-18 01:29:01.620 -07 000000467 INF: X=2  Z correction [um]=-0.01432754
17-03-18 01:29:01.620 -07 000000467 INF: Autofocus finished
17-03-18 01:29:01.630 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:29:01.650 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:29:01.850 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:29:01.850 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 01:29:01.850 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136640850851208. ----------
17-03-18 01:29:01.850 -07 000000610 INF: Cycle	87	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:29:01.850 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28356, sync = True, waitForSettling = True)
17-03-18 01:29:01.850 -07 000000610 INF: Z Motor: Moving to -0.129805 mm, started at -0.136641 mm, distance = 6.84 um
17-03-18 01:29:01.860 -07 000000610 INF: FPGA: Xmit ZDACW 28356\n [Z Motor]
17-03-18 01:29:01.860 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 01:29:01.870 -07 000000610 INF: FPGA: 'ZDACW 28356' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:01.870 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:29:01.870 -07 000000625 INF: FPGA: Recv ZDACR 28356
17-03-18 01:29:01.880 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:01.880 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:29:02.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:02.030 -07 000000474 INF: FPGA: Recv ZSGSRD 29498
17-03-18 01:29:02.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:02.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:02.040 -07 000000461 INF: FPGA: Recv ZSGSRD 29490
17-03-18 01:29:02.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:02.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:02.050 -07 000000474 INF: FPGA: Recv ZSGSRD 29496
17-03-18 01:29:02.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:02.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:02.060 -07 000000461 INF: FPGA: Recv ZSGSRD 29493
17-03-18 01:29:02.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:02.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:02.070 -07 000000625 INF: FPGA: Recv ZSGSRD 29495
17-03-18 01:29:02.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:02.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:02.080 -07 000000461 INF: FPGA: Recv ZSGSRD 29498
17-03-18 01:29:02.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:02.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:02.090 -07 000000467 INF: FPGA: Recv ZSGSRD 29491
17-03-18 01:29:02.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:29:02.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:02.100 -07 000000590 INF: FPGA: Recv ZSGSRD 29501
17-03-18 01:29:02.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:02.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:02.110 -07 000000625 INF: FPGA: Recv ZSGSRD 29490
17-03-18 01:29:02.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:02.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:02.120 -07 000000618 INF: FPGA: Recv ZSGSRD 29493
17-03-18 01:29:02.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:02.130 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:02.130 -07 000000625 INF: FPGA: Recv ZPIEZORD 24943
17-03-18 01:29:02.140 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:02.140 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -10.0 V.
17-03-18 01:29:02.140 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29494 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29494 (-129.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29490 (-129.0 uncal um), Max = 29501 (-129.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:29:02.140 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29494, posNoise = 7, negNoise = 4
17-03-18 01:29:02.140 -07 000000610 INF: Z Motor: After move to -0.129805, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:02.140 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:29:02.140 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:02.140 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:02.140 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:02.140 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:02.140 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:29:02.140 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:29:02.140 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:29:02.140 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:02.140 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:29:02.140 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:29:02.140 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:29:02.140 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:29:02.140 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:29:02.140 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:29:02.150 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:29:02.150 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:29:02.160 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:29:02.160 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:29:02.160 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:29:02.160 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:29:02.170 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28533 150\n [Camera]
17-03-18 01:29:02.260 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:29:02.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:29:02.370 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:29:02.750 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:29:02.760 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:29:02.760 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:02.760 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:02.760 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:29:02.760 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:29:02.760 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:29:02.760 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:02.760 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:02.760 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 01:29:02.950 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28533 775
17-03-18 01:29:03.100 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:29:03.160 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:29:03.160 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:29:03.160 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:03.160 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:29:03.160 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:29:03.160 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:03.160 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:29:03.160 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:29:03.160 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:29:03.170 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:29:03.290 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:29:03.290 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:29:03.290 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:03.290 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:03.290 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 01:29:03.290 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:29:03.290 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:29:03.290 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:03.290 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:03.290 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 01:29:03.480 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:29:03.480 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:29:03.480 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28533 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:29:03.480 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:29:03.480 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129799064920233. ------
17-03-18 01:29:03.480 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:29:03.480 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13626 mm
17-03-18 01:29:03.480 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:29:03.490 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:29:03.490 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29765, sync = True, waitForSettling = False)
17-03-18 01:29:03.490 -07 000000502 INF: Z Motor: Moving to -0.136255 mm, started at -0.129799 mm, distance = -6.46 um
17-03-18 01:29:03.490 -07 000000502 INF: FPGA: Xmit ZDACW 29765\n [Z Motor]
17-03-18 01:29:03.490 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:29:03.490 -07 000000461 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 01:29:03.490 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:29:03.490 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:29:03.500 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:29:03.500 -07 000000502 INF: FPGA: 'ZDACW 29765' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:29:03.510 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:03.510 -07 000000487 INF: FPGA: Recv YRDPOS 141369
17-03-18 01:29:03.520 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:29:03.520 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:29:03.520 -07 000000461 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:03.520 -07 000000608 INF: FPGA: Recv ZDACR 29765
17-03-18 01:29:03.520 -07 000000461 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:29:03.520 -07 000000461 INF: Y Motor: Moving 1352 steps-31
17-03-18 01:29:03.530 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:29:03.530 -07 000000502 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 01:29:03.530 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:29:03.680 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 01:29:03.680 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:29:03.680 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:03.680 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:29:03.680 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:29:03.680 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:03.680 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:29:03.690 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:29:03.690 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:29:03.690 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:29:03.700 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:29:03.700 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-18 01:29:03.900 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 01:29:03.900 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 01:29:03.950 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:03.950 -07 000000591 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:29:03.960 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:29:03.960 -07 000000461 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:03.960 -07 000000461 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:29:03.960 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-18 01:29:04.910 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:04.910 -07 000000474 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:29:04.920 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:04.920 -07 000000461 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:04.940 -07 000000461 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:29:04.940 -07 000000461 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:29:04.940 -07 000000461 INF: Y Motor: Moved to 69.8633 after 1454 ms (table move)
17-03-18 01:29:04.950 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136255 mm (DAC = 29765)
17-03-18 01:29:04.950 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:04.950 -07 000000608 INF: FPGA: Recv ZSGSRD 30510
17-03-18 01:29:04.960 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:29:04.960 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:04.960 -07 000000608 INF: FPGA: Recv ZSGSRD 30507
17-03-18 01:29:04.970 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:04.970 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:04.970 -07 000000608 INF: FPGA: Recv ZSGSRD 30496
17-03-18 01:29:04.980 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:04.980 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:04.980 -07 000000474 INF: FPGA: Recv ZSGSRD 30501
17-03-18 01:29:04.990 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:04.990 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:04.990 -07 000000474 INF: FPGA: Recv ZSGSRD 30500
17-03-18 01:29:05.000 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:05.000 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:05.000 -07 000000608 INF: FPGA: Recv ZSGSRD 30500
17-03-18 01:29:05.010 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:05.010 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:05.010 -07 000000502 INF: FPGA: Recv ZSGSRD 30500
17-03-18 01:29:05.020 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:05.020 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:05.020 -07 000000502 INF: FPGA: Recv ZSGSRD 30491
17-03-18 01:29:05.030 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:05.030 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:05.030 -07 000000608 INF: FPGA: Recv ZSGSRD 30503
17-03-18 01:29:05.040 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:05.040 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:05.040 -07 000000608 INF: FPGA: Recv ZSGSRD 30509
17-03-18 01:29:05.050 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:05.050 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:05.050 -07 000000502 INF: FPGA: Recv ZPIEZORD 26284
17-03-18 01:29:05.060 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:05.060 -07 000000625 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.542 V. Piezo Error = -9.3 V.
17-03-18 01:29:05.060 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30502 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30500 (-135.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30491 (-135.4 uncal um), Max = 30510 (-135.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 01:29:05.060 -07 000000625 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30502, posNoise = 8, negNoise = 11
17-03-18 01:29:05.060 -07 000000625 INF: Z Motor: After move to -0.136255, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:05.060 -07 000000625 INF: Z Motor: Settle wait time = 1460 ms, measure time = 107 ms (allowed 150 ms), total time = 1567 ms
17-03-18 01:29:05.060 -07 000000625 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:29:05.110 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 01:29:05.110 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:29:05.110 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:05.110 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:05.110 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:05.110 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:05.110 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:29:05.110 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:05.110 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:29:05.110 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:29:05.120 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:29:05.120 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:29:05.130 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:29:05.130 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:29:05.130 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:29:05.180 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:29:05.480 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:29:05.480 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:29:05.480 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:29:05.480 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 01:29:05.520 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:29:05.520 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 01:29:05.520 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:29:05.600 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:29:05.600 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:05.610 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:29:05.610 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:29:05.620 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:29:05.620 -07 000000502 INF: Autofocus start
17-03-18 01:29:05.620 -07 000000502 INF: MeasureProfile start
17-03-18 01:29:05.620 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:29:05.630 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:29:05.630 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:29:05.630 -07 000000502 INF: MeasureProfile done
17-03-18 01:29:05.630 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:29:05.630 -07 000000502 INF: Autofocus finished
17-03-18 01:29:05.830 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:29:05.830 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:29:05.830 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136274670759128. ----------
17-03-18 01:29:05.830 -07 000000610 INF: Cycle	87	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:29:05.840 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28273, sync = True, waitForSettling = True)
17-03-18 01:29:05.840 -07 000000610 INF: Z Motor: Moving to -0.129425 mm, started at -0.136275 mm, distance = 6.85 um
17-03-18 01:29:05.840 -07 000000610 INF: FPGA: Xmit ZDACW 28273\n [Z Motor]
17-03-18 01:29:05.840 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:29:05.850 -07 000000610 INF: FPGA: 'ZDACW 28273' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:29:05.850 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:29:05.850 -07 000000424 INF: FPGA: Recv ZDACR 28273
17-03-18 01:29:05.860 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:05.860 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:29:06.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:06.010 -07 000000608 INF: FPGA: Recv ZSGSRD 29442
17-03-18 01:29:06.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:06.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:06.020 -07 000000608 INF: FPGA: Recv ZSGSRD 29439
17-03-18 01:29:06.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:06.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:06.030 -07 000000608 INF: FPGA: Recv ZSGSRD 29430
17-03-18 01:29:06.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:06.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:06.040 -07 000000487 INF: FPGA: Recv ZSGSRD 29437
17-03-18 01:29:06.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:06.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:06.050 -07 000000487 INF: FPGA: Recv ZSGSRD 29435
17-03-18 01:29:06.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:06.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:06.060 -07 000000474 INF: FPGA: Recv ZSGSRD 29438
17-03-18 01:29:06.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:06.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:06.070 -07 000000608 INF: FPGA: Recv ZSGSRD 29435
17-03-18 01:29:06.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:06.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:06.080 -07 000000461 INF: FPGA: Recv ZSGSRD 29433
17-03-18 01:29:06.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:06.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:06.090 -07 000000487 INF: FPGA: Recv ZSGSRD 29442
17-03-18 01:29:06.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:06.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:06.100 -07 000000461 INF: FPGA: Recv ZSGSRD 29437
17-03-18 01:29:06.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:06.110 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:06.110 -07 000000424 INF: FPGA: Recv ZPIEZORD 24903
17-03-18 01:29:06.120 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:06.120 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -9.9 V.
17-03-18 01:29:06.120 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29437 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29437 (-128.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29430 (-128.6 uncal um), Max = 29442 (-128.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:29:06.120 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29437, posNoise = 5, negNoise = 7
17-03-18 01:29:06.120 -07 000000610 INF: Z Motor: After move to -0.129425, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:06.120 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:29:06.120 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:06.120 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:06.120 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:06.120 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:06.120 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:29:06.120 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:29:06.120 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:29:06.120 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:06.120 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:29:06.120 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:29:06.120 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:29:06.120 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:29:06.130 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:29:06.130 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:29:06.130 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:29:06.130 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:29:06.140 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 01:29:06.140 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:29:06.140 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 01:29:06.140 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:29:06.140 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28449 150\n [Camera]
17-03-18 01:29:06.340 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:29:06.730 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:29:06.730 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:29:06.730 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:06.730 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:06.730 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 01:29:06.730 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:29:06.730 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:29:06.730 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:06.730 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:06.730 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 01:29:06.920 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28449 775
17-03-18 01:29:07.000 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.960826,
17-03-18 01:29:07.070 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:29:07.120 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 01:29:07.120 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 01:29:07.120 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:07.120 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:29:07.120 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:29:07.120 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:29:07.120 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:07.120 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:29:07.120 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:29:07.130 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:29:07.260 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:29:07.260 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:29:07.260 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:07.400 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:29:07.400 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:29:07.400 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:29:07.400 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:29:07.400 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:07.400 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 01:29:07.400 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:07.410 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:07.410 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:29:07.450 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:29:07.450 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:29:07.450 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28449 150' command took 2 ms to send, 1309 ms to get response, and 1312 ms overall
17-03-18 01:29:07.460 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:29:07.460 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129432884828152. ------
17-03-18 01:29:07.460 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:29:07.460 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13537 mm
17-03-18 01:29:07.460 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:29:07.460 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:29:07.460 -07 000000461 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 01:29:07.460 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29571, sync = True, waitForSettling = False)
17-03-18 01:29:07.460 -07 000000455 INF: Z Motor: Moving to -0.135367 mm, started at -0.129433 mm, distance = -5.93 um
17-03-18 01:29:07.460 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:29:07.470 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:29:07.470 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:07.470 -07 000000447 INF: FPGA: Recv YRDPOS 143081
17-03-18 01:29:07.480 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:29:07.480 -07 000000461 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:07.480 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:29:07.480 -07 000000461 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:29:07.480 -07 000000461 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:29:07.490 -07 000000455 INF: FPGA: Xmit ZDACW 29571\n [Z Motor]
17-03-18 01:29:07.490 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:29:07.500 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:29:07.500 -07 000000455 INF: FPGA: 'ZDACW 29571' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 01:29:07.510 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:29:07.510 -07 000000591 INF: FPGA: Recv ZDACR 29571
17-03-18 01:29:07.520 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:29:07.520 -07 000000455 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 01:29:07.680 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:29:07.680 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 214 ms overall
17-03-18 01:29:07.800 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:29:07.800 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:29:07.800 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:07.800 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:29:07.800 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:29:07.800 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:07.800 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:29:07.810 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:29:07.810 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 542 ms.
17-03-18 01:29:07.810 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:29:07.870 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 01:29:07.870 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 01:29:07.920 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:07.920 -07 000000479 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:29:07.930 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:29:07.930 -07 000000461 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:07.930 -07 000000461 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:29:07.930 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.141 mm/sec
17-03-18 01:29:08.880 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:08.880 -07 000000438 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:29:08.890 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:08.890 -07 000000461 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:08.910 -07 000000461 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:29:08.910 -07 000000461 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:29:08.910 -07 000000461 INF: Y Motor: Moved to 70.6885 after 1448 ms (table move)
17-03-18 01:29:08.920 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135367 mm (DAC = 29571)
17-03-18 01:29:08.920 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:08.920 -07 000000447 INF: FPGA: Recv ZSGSRD 30359
17-03-18 01:29:08.930 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:29:08.930 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:08.930 -07 000000467 INF: FPGA: Recv ZSGSRD 30358
17-03-18 01:29:08.940 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:08.940 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:08.940 -07 000000447 INF: FPGA: Recv ZSGSRD 30361
17-03-18 01:29:08.950 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:08.950 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:08.950 -07 000000467 INF: FPGA: Recv ZSGSRD 30362
17-03-18 01:29:08.960 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:08.960 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:08.960 -07 000000461 INF: FPGA: Recv ZSGSRD 30368
17-03-18 01:29:08.970 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:08.970 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:08.970 -07 000000447 INF: FPGA: Recv ZSGSRD 30364
17-03-18 01:29:08.980 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:08.980 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:08.980 -07 000000447 INF: FPGA: Recv ZSGSRD 30360
17-03-18 01:29:08.990 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:08.990 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:08.990 -07 000000461 INF: FPGA: Recv ZSGSRD 30361
17-03-18 01:29:09.000 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:09.000 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:09.000 -07 000000625 INF: FPGA: Recv ZSGSRD 30356
17-03-18 01:29:09.010 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:09.010 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:09.010 -07 000000625 INF: FPGA: Recv ZSGSRD 30358
17-03-18 01:29:09.020 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:09.020 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:09.020 -07 000000625 INF: FPGA: Recv ZPIEZORD 26149
17-03-18 01:29:09.030 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:09.030 -07 000000487 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.512 V. Piezo Error = -9.3 V.
17-03-18 01:29:09.030 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30361 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30360 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30356 (-134.5 uncal um), Max = 30368 (-134.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:29:09.030 -07 000000487 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30361, posNoise = 7, negNoise = 5
17-03-18 01:29:09.030 -07 000000487 INF: Z Motor: After move to -0.135367, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:09.030 -07 000000487 INF: Z Motor: Settle wait time = 1453 ms, measure time = 109 ms (allowed 150 ms), total time = 1562 ms
17-03-18 01:29:09.030 -07 000000487 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:29:09.080 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 01:29:09.080 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:29:09.080 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:09.080 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:09.080 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:09.080 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:09.080 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:29:09.080 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:09.080 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:29:09.080 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:29:09.090 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:29:09.090 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:29:09.090 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:29:09.090 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:29:09.100 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:29:09.140 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:29:09.440 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:29:09.440 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:29:09.440 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:29:09.440 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 01:29:09.480 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:29:09.480 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:29:09.480 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 01:29:09.560 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:29:09.560 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:09.560 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:29:09.560 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:29:09.580 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:29:09.580 -07 000000424 INF: Autofocus start
17-03-18 01:29:09.580 -07 000000424 INF: MeasureProfile start
17-03-18 01:29:09.590 -07 000000424 INF: MeasureProfile done
17-03-18 01:29:09.590 -07 000000424 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 01:29:09.590 -07 000000424 INF: Autofocus finished
17-03-18 01:29:09.590 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:29:09.590 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 8 ms to get response, and 14 ms overall
17-03-18 01:29:09.590 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:29:09.800 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:29:09.800 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 201 ms to get response, and 202 ms overall
17-03-18 01:29:09.800 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135368856847139. ----------
17-03-18 01:29:09.800 -07 000000610 INF: Cycle	87	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:29:09.810 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28066, sync = True, waitForSettling = True)
17-03-18 01:29:09.810 -07 000000610 INF: Z Motor: Moving to -0.128478 mm, started at -0.135369 mm, distance = 6.89 um
17-03-18 01:29:09.810 -07 000000610 INF: FPGA: Xmit ZDACW 28066\n [Z Motor]
17-03-18 01:29:09.810 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:29:09.820 -07 000000610 INF: FPGA: 'ZDACW 28066' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:29:09.820 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:29:09.820 -07 000000424 INF: FPGA: Recv ZDACR 28066
17-03-18 01:29:09.830 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:09.830 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:29:09.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:09.980 -07 000000424 INF: FPGA: Recv ZSGSRD 29286
17-03-18 01:29:09.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:09.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:09.990 -07 000000474 INF: FPGA: Recv ZSGSRD 29293
17-03-18 01:29:10.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:10.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:10.000 -07 000000474 INF: FPGA: Recv ZSGSRD 29285
17-03-18 01:29:10.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:10.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:10.010 -07 000000474 INF: FPGA: Recv ZSGSRD 29290
17-03-18 01:29:10.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:10.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:10.020 -07 000000474 INF: FPGA: Recv ZSGSRD 29292
17-03-18 01:29:10.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:10.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:10.030 -07 000000474 INF: FPGA: Recv ZSGSRD 29288
17-03-18 01:29:10.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:10.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:10.040 -07 000000474 INF: FPGA: Recv ZSGSRD 29290
17-03-18 01:29:10.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:10.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:10.050 -07 000000474 INF: FPGA: Recv ZSGSRD 29289
17-03-18 01:29:10.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:10.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:10.060 -07 000000474 INF: FPGA: Recv ZSGSRD 29288
17-03-18 01:29:10.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:10.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:10.070 -07 000000474 INF: FPGA: Recv ZSGSRD 29286
17-03-18 01:29:10.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:10.080 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:10.080 -07 000000474 INF: FPGA: Recv ZPIEZORD 24719
17-03-18 01:29:10.090 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:10.090 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.283 V. Piezo Error = -10.0 V.
17-03-18 01:29:10.090 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29289 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29288 (-127.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29285 (-127.7 uncal um), Max = 29293 (-127.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:29:10.090 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29289, posNoise = 4, negNoise = 4
17-03-18 01:29:10.090 -07 000000610 INF: Z Motor: After move to -0.128478, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:10.090 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:29:10.090 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:10.090 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:10.090 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:10.090 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:10.100 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:29:10.100 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:10.100 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:29:10.100 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:29:10.100 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:29:10.100 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:29:10.120 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:29:10.120 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:29:10.120 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:29:10.120 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:29:10.120 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:29:10.120 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:29:10.120 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:29:10.120 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:29:10.140 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:29:10.140 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:29:10.140 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28243 150\n [Camera]
17-03-18 01:29:10.340 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:29:10.730 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:29:10.730 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:29:10.730 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:10.730 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:29:10.730 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:29:10.730 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:10.730 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:10.730 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-18 01:29:10.740 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:10.740 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) start.
17-03-18 01:29:10.920 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28243 775
17-03-18 01:29:11.070 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:29:11.130 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:29:11.130 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:29:11.130 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:11.130 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:29:11.130 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:29:11.130 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:11.130 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:29:11.130 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:29:11.130 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:29:11.140 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:29:11.260 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:29:11.260 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:29:11.260 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:11.370 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:29:11.370 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:29:11.380 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:11.380 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:11.380 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:29:11.380 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:11.380 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) start.
17-03-18 01:29:11.450 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:29:11.450 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:29:11.450 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28243 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-18 01:29:11.450 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:29:11.450 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128482101431172. ------
17-03-18 01:29:11.460 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:29:11.460 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13513 mm
17-03-18 01:29:11.460 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:29:11.460 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:29:11.460 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:29:11.460 -07 000000474 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 01:29:11.460 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29519, sync = True, waitForSettling = False)
17-03-18 01:29:11.460 -07 000000618 INF: Z Motor: Moving to -0.135129 mm, started at -0.128482 mm, distance = -6.65 um
17-03-18 01:29:11.470 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:29:11.470 -07 000000618 INF: FPGA: Xmit ZDACW 29519\n [Z Motor]
17-03-18 01:29:11.470 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:29:11.480 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:11.480 -07 000000618 INF: FPGA: 'ZDACW 29519' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:29:11.480 -07 000000502 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:29:11.490 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:29:11.490 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:29:11.490 -07 000000474 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:11.490 -07 000000474 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:29:11.490 -07 000000474 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:29:11.500 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:29:11.510 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:29:11.790 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) end. Duration was 407 ms.
17-03-18 01:29:11.790 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:29:11.790 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:11.790 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 01:29:11.790 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:29:11.790 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:11.790 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:29:11.800 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:29:11.800 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 535 ms.
17-03-18 01:29:11.800 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 426 ms.
17-03-18 01:29:11.810 -07 000000590 INF: FPGA: Recv ZDACR 29519
17-03-18 01:29:11.810 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:29:11.810 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 301 ms to get response, and 331 ms overall
17-03-18 01:29:11.810 -07 000000618 INF: Z Motor: MoveAbsStepped took 345 ms (did NOT wait for settling yet))
17-03-18 01:29:11.810 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 312 ms to get response, and 341 ms overall
17-03-18 01:29:11.880 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 01:29:11.880 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:29:11.930 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:11.930 -07 000000629 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:29:11.940 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:11.940 -07 000000474 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:11.940 -07 000000474 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:29:11.940 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.137 mm/sec
17-03-18 01:29:12.710 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:29:12.710 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:29:12.710 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.959467,
17-03-18 01:29:12.890 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:12.890 -07 000000629 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:29:12.900 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:12.900 -07 000000474 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:12.920 -07 000000474 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:29:12.920 -07 000000474 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:29:12.920 -07 000000474 INF: Y Motor: Moved to 71.5190 after 1460 ms (table move)
17-03-18 01:29:12.930 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135129 mm (DAC = 29519)
17-03-18 01:29:12.930 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:12.930 -07 000000474 INF: FPGA: Recv ZSGSRD 30321
17-03-18 01:29:12.940 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:12.940 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:12.940 -07 000000608 INF: FPGA: Recv ZSGSRD 30323
17-03-18 01:29:12.950 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:12.950 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:12.950 -07 000000474 INF: FPGA: Recv ZSGSRD 30323
17-03-18 01:29:12.960 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:12.960 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:12.960 -07 000000608 INF: FPGA: Recv ZSGSRD 30330
17-03-18 01:29:12.970 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:12.970 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:12.970 -07 000000608 INF: FPGA: Recv ZSGSRD 30333
17-03-18 01:29:12.980 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:12.980 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:12.980 -07 000000608 INF: FPGA: Recv ZSGSRD 30328
17-03-18 01:29:12.990 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:12.990 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:12.990 -07 000000629 INF: FPGA: Recv ZSGSRD 30320
17-03-18 01:29:13.000 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:13.000 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:13.000 -07 000000608 INF: FPGA: Recv ZSGSRD 30322
17-03-18 01:29:13.010 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:13.010 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:13.010 -07 000000608 INF: FPGA: Recv ZSGSRD 30323
17-03-18 01:29:13.020 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:13.020 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:13.020 -07 000000608 INF: FPGA: Recv ZSGSRD 30326
17-03-18 01:29:13.030 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:13.030 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:13.030 -07 000000618 INF: FPGA: Recv ZPIEZORD 26106
17-03-18 01:29:13.040 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:13.040 -07 000000438 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.504 V. Piezo Error = -9.3 V.
17-03-18 01:29:13.040 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30325 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30323 (-134.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30320 (-134.3 uncal um), Max = 30333 (-134.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:29:13.040 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30325, posNoise = 8, negNoise = 5
17-03-18 01:29:13.040 -07 000000438 INF: Z Motor: After move to -0.135129, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:13.040 -07 000000438 INF: Z Motor: Settle wait time = 1463 ms, measure time = 111 ms (allowed 150 ms), total time = 1574 ms
17-03-18 01:29:13.040 -07 000000438 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:29:13.080 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 01:29:13.080 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:29:13.080 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:13.080 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:13.080 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:13.080 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:13.080 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:29:13.080 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:13.080 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:29:13.080 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:29:13.090 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:29:13.090 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:29:13.100 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:29:13.100 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:29:13.100 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:29:13.150 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:29:13.450 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:29:13.450 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:29:13.450 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:29:13.450 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2617114384, 0x0, 559484976) start.
17-03-18 01:29:13.490 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:29:13.490 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:29:13.490 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:29:13.580 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2617114384, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:29:13.580 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:13.580 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:29:13.580 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:29:13.590 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:29:13.590 -07 000000629 INF: Autofocus start
17-03-18 01:29:13.590 -07 000000629 INF: MeasureProfile start
17-03-18 01:29:13.590 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:29:13.600 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:29:13.600 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:29:13.600 -07 000000629 INF: MeasureProfile done
17-03-18 01:29:13.600 -07 000000629 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:29:13.600 -07 000000629 INF: Autofocus finished
17-03-18 01:29:13.800 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:29:13.800 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:29:13.810 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135137585210036. ----------
17-03-18 01:29:13.810 -07 000000610 INF: Cycle	87	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:29:13.810 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28043, sync = True, waitForSettling = True)
17-03-18 01:29:13.810 -07 000000610 INF: Z Motor: Moving to -0.128373 mm, started at -0.135138 mm, distance = 6.76 um
17-03-18 01:29:13.810 -07 000000610 INF: FPGA: Xmit ZDACW 28043\n [Z Motor]
17-03-18 01:29:13.810 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:29:13.820 -07 000000610 INF: FPGA: 'ZDACW 28043' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:29:13.820 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:29:13.820 -07 000000625 INF: FPGA: Recv ZDACR 28043
17-03-18 01:29:13.830 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:13.830 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:29:13.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:13.980 -07 000000629 INF: FPGA: Recv ZSGSRD 29272
17-03-18 01:29:13.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:13.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:13.990 -07 000000474 INF: FPGA: Recv ZSGSRD 29272
17-03-18 01:29:14.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:14.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:14.000 -07 000000438 INF: FPGA: Recv ZSGSRD 29275
17-03-18 01:29:14.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:14.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:14.010 -07 000000618 INF: FPGA: Recv ZSGSRD 29272
17-03-18 01:29:14.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:14.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:14.020 -07 000000438 INF: FPGA: Recv ZSGSRD 29276
17-03-18 01:29:14.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:14.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:14.030 -07 000000474 INF: FPGA: Recv ZSGSRD 29275
17-03-18 01:29:14.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:14.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:14.040 -07 000000438 INF: FPGA: Recv ZSGSRD 29273
17-03-18 01:29:14.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:14.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:14.050 -07 000000629 INF: FPGA: Recv ZSGSRD 29274
17-03-18 01:29:14.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:14.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:14.060 -07 000000618 INF: FPGA: Recv ZSGSRD 29270
17-03-18 01:29:14.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:14.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:14.070 -07 000000438 INF: FPGA: Recv ZSGSRD 29276
17-03-18 01:29:14.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:14.080 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:14.080 -07 000000625 INF: FPGA: Recv ZPIEZORD 24736
17-03-18 01:29:14.090 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:14.090 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.279 V. Piezo Error = -9.9 V.
17-03-18 01:29:14.090 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29274 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29274 (-127.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29270 (-127.6 uncal um), Max = 29276 (-127.6 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:29:14.090 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29274, posNoise = 2, negNoise = 4
17-03-18 01:29:14.090 -07 000000610 INF: Z Motor: After move to -0.128373, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:14.090 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:29:14.090 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:14.090 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:14.090 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:14.090 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:14.090 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:29:14.090 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:29:14.090 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:29:14.090 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:14.100 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:29:14.100 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:29:14.100 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:29:14.100 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:29:14.100 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:29:14.100 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:29:14.100 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:29:14.100 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:29:14.110 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:29:14.110 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:29:14.110 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:29:14.110 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:29:14.110 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28220 150\n [Camera]
17-03-18 01:29:14.310 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:29:14.700 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:29:14.710 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:29:14.710 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:14.710 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:14.710 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:29:14.710 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:29:14.710 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:29:14.710 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:14.710 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:14.710 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:29:14.900 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28220 778
17-03-18 01:29:15.040 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:29:15.090 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 01:29:15.100 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:29:15.100 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:15.100 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:29:15.100 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:29:15.100 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:15.100 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:29:15.100 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:29:15.100 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:29:15.110 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:29:15.230 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:29:15.230 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:29:15.230 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:15.340 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:29:15.340 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:29:15.340 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:15.350 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:15.350 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:15.350 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:29:15.350 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:29:15.420 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:29:15.430 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:29:15.430 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28220 150' command took 2 ms to send, 1300 ms to get response, and 1313 ms overall
17-03-18 01:29:15.430 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:29:15.430 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128385738249045. ------
17-03-18 01:29:15.430 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:29:15.430 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13476 mm
17-03-18 01:29:15.430 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:29:15.430 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:29:15.430 -07 000000625 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 01:29:15.440 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:15.740 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 01:29:15.740 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:29:15.740 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:15.740 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:29:15.740 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:29:15.740 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:15.740 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:29:15.750 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:29:15.750 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-18 01:29:15.750 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:29:15.760 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29439, sync = True, waitForSettling = False)
17-03-18 01:29:15.760 -07 000000438 INF: Z Motor: Moving to -0.134763 mm, started at -0.128386 mm, distance = -6.38 um
17-03-18 01:29:15.760 -07 000000438 INF: FPGA: Xmit ZDACW 29439\n [Z Motor]
17-03-18 01:29:15.760 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:29:15.760 -07 000000474 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:29:15.760 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 315 ms to get response, and 326 ms overall
17-03-18 01:29:15.760 -07 000000625 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:15.760 -07 000000625 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:29:15.760 -07 000000625 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:29:15.760 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 325 ms to get response, and 328 ms overall
17-03-18 01:29:15.760 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:29:15.770 -07 000000438 INF: FPGA: 'ZDACW 29439' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:29:15.770 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:29:15.770 -07 000000474 INF: FPGA: Recv ZDACR 29439
17-03-18 01:29:15.780 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:29:15.780 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:15.780 -07 000000438 INF: Z Motor: MoveAbsStepped took 16 ms (did NOT wait for settling yet))
17-03-18 01:29:15.790 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:29:15.990 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:29:15.990 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 226 ms overall
17-03-18 01:29:16.150 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 01:29:16.150 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 01:29:16.200 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:16.200 -07 000000455 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:29:16.210 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:16.210 -07 000000625 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:16.210 -07 000000625 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 01:29:16.210 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.152 mm/sec
17-03-18 01:29:17.160 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:17.160 -07 000000487 INF: FPGA: Recv YRDPOS 148173
17-03-18 01:29:17.170 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:17.170 -07 000000625 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:17.190 -07 000000625 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:29:17.190 -07 000000625 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:29:17.190 -07 000000625 INF: Y Motor: Moved to 72.3501 after 1759 ms (table move)
17-03-18 01:29:17.200 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134763 mm (DAC = 29439)
17-03-18 01:29:17.200 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:17.200 -07 000000479 INF: FPGA: Recv ZSGSRD 30275
17-03-18 01:29:17.210 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:29:17.210 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:17.210 -07 000000487 INF: FPGA: Recv ZSGSRD 30263
17-03-18 01:29:17.220 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:17.220 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:17.220 -07 000000618 INF: FPGA: Recv ZSGSRD 30261
17-03-18 01:29:17.230 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:17.230 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:17.230 -07 000000455 INF: FPGA: Recv ZSGSRD 30275
17-03-18 01:29:17.240 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:17.240 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:17.240 -07 000000474 INF: FPGA: Recv ZSGSRD 30272
17-03-18 01:29:17.250 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:17.250 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:17.250 -07 000000438 INF: FPGA: Recv ZSGSRD 30265
17-03-18 01:29:17.260 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:17.260 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:17.260 -07 000000474 INF: FPGA: Recv ZSGSRD 30271
17-03-18 01:29:17.260 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:29:17.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:29:17.270 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:17.270 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:17.270 -07 000000625 INF: FPGA: Recv ZSGSRD 30259
17-03-18 01:29:17.280 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:17.280 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:17.280 -07 000000479 INF: FPGA: Recv ZSGSRD 30267
17-03-18 01:29:17.290 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:17.290 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:17.290 -07 000000487 INF: FPGA: Recv ZSGSRD 30266
17-03-18 01:29:17.300 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:17.300 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:17.300 -07 000000618 INF: FPGA: Recv ZPIEZORD 26043
17-03-18 01:29:17.310 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:17.310 -07 000000629 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.492 V. Piezo Error = -9.3 V.
17-03-18 01:29:17.310 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30267 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30266 (-134.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30259 (-133.9 uncal um), Max = 30275 (-134.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:29:17.310 -07 000000629 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30267, posNoise = 8, negNoise = 8
17-03-18 01:29:17.310 -07 000000629 INF: Z Motor: After move to -0.134763, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:17.310 -07 000000629 INF: Z Motor: Settle wait time = 1439 ms, measure time = 107 ms (allowed 150 ms), total time = 1546 ms
17-03-18 01:29:17.310 -07 000000629 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:29:17.360 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1923 ms
17-03-18 01:29:17.360 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:29:17.360 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:17.360 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:17.370 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:17.370 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:17.370 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:29:17.370 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:17.370 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:29:17.370 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:29:17.380 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:29:17.380 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:29:17.380 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:29:17.380 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:29:17.390 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:29:17.430 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:29:17.730 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:29:17.730 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:29:17.730 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:29:17.740 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:29:17.770 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:29:17.770 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 01:29:17.770 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 01:29:17.850 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:29:17.850 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:17.850 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:29:17.850 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 01:29:17.870 -07 000000455 INF: Autofocus start
17-03-18 01:29:17.870 -07 000000455 INF: MeasureProfile start
17-03-18 01:29:17.870 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:29:17.870 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:29:17.880 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:29:17.880 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:29:17.880 -07 000000455 INF: MeasureProfile done
17-03-18 01:29:17.880 -07 000000455 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:29:17.880 -07 000000455 INF: Autofocus finished
17-03-18 01:29:18.070 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.989471,
17-03-18 01:29:18.080 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:29:18.080 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 01:29:18.080 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.134764980905814. ----------
17-03-18 01:29:18.080 -07 000000610 INF: Cycle	87	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:29:18.090 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27946, sync = True, waitForSettling = True)
17-03-18 01:29:18.090 -07 000000610 INF: Z Motor: Moving to -0.127929 mm, started at -0.134765 mm, distance = 6.84 um
17-03-18 01:29:18.110 -07 000000610 INF: FPGA: Xmit ZDACW 27946\n [Z Motor]
17-03-18 01:29:18.110 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:29:18.120 -07 000000610 INF: FPGA: 'ZDACW 27946' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 01:29:18.120 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:29:18.120 -07 000000455 INF: FPGA: Recv ZDACR 27946
17-03-18 01:29:18.130 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:18.130 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:29:18.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:18.280 -07 000000625 INF: FPGA: Recv ZSGSRD 29200
17-03-18 01:29:18.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:18.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:18.290 -07 000000487 INF: FPGA: Recv ZSGSRD 29208
17-03-18 01:29:18.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:18.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:18.300 -07 000000625 INF: FPGA: Recv ZSGSRD 29204
17-03-18 01:29:18.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:18.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:18.310 -07 000000625 INF: FPGA: Recv ZSGSRD 29203
17-03-18 01:29:18.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:18.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:18.320 -07 000000455 INF: FPGA: Recv ZSGSRD 29203
17-03-18 01:29:18.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:18.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:18.330 -07 000000625 INF: FPGA: Recv ZSGSRD 29208
17-03-18 01:29:18.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:18.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:18.340 -07 000000625 INF: FPGA: Recv ZSGSRD 29208
17-03-18 01:29:18.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:18.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:18.350 -07 000000455 INF: FPGA: Recv ZSGSRD 29199
17-03-18 01:29:18.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:18.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:18.360 -07 000000487 INF: FPGA: Recv ZSGSRD 29201
17-03-18 01:29:18.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:18.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:18.370 -07 000000455 INF: FPGA: Recv ZSGSRD 29207
17-03-18 01:29:18.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:18.380 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:18.380 -07 000000487 INF: FPGA: Recv ZPIEZORD 24624
17-03-18 01:29:18.390 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:18.390 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.264 V. Piezo Error = -10.0 V.
17-03-18 01:29:18.390 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29204 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29204 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29199 (-127.1 uncal um), Max = 29208 (-127.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:29:18.390 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29204, posNoise = 4, negNoise = 5
17-03-18 01:29:18.390 -07 000000610 INF: Z Motor: After move to -0.127929, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:18.390 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-18 01:29:18.390 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:18.390 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:18.390 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:18.390 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:18.390 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:29:18.390 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:18.390 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:29:18.390 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:29:18.390 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:29:18.390 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:29:18.390 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:29:18.390 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:29:18.390 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:29:18.390 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:29:18.400 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:29:18.400 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:29:18.410 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:29:18.410 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:29:18.410 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:29:18.410 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:29:18.420 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28123 150\n [Camera]
17-03-18 01:29:18.610 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:29:19.010 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 01:29:19.010 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 01:29:19.010 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:19.010 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:19.010 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:29:19.010 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 01:29:19.010 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 01:29:19.010 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:19.010 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:19.010 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:29:19.200 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28123 776
17-03-18 01:29:19.350 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:29:19.410 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:29:19.410 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:29:19.410 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:19.410 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:29:19.410 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:29:19.410 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:19.410 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:29:19.410 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:29:19.410 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:29:19.420 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:29:19.540 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:29:19.540 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:29:19.540 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:19.650 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:29:19.650 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:29:19.650 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:19.660 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:19.660 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:29:19.660 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:19.660 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:29:19.730 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:29:19.730 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:29:19.730 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28123 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:29:19.730 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:29:19.730 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.127936043399122. ------
17-03-18 01:29:19.730 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:29:19.730 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13447 mm
17-03-18 01:29:19.730 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:29:19.740 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:29:19.740 -07 000000455 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-18 01:29:19.740 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29376, sync = True, waitForSettling = False)
17-03-18 01:29:19.740 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:29:19.740 -07 000000424 INF: Z Motor: Moving to -0.134475 mm, started at -0.127936 mm, distance = -6.54 um
17-03-18 01:29:19.740 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:29:19.740 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:19.740 -07 000000461 INF: FPGA: Recv YRDPOS 148173
17-03-18 01:29:19.750 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:19.750 -07 000000455 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:19.750 -07 000000455 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:29:19.750 -07 000000455 INF: Y Motor: Moving 1348 steps-27
17-03-18 01:29:19.750 -07 000000424 INF: FPGA: Xmit ZDACW 29376\n [Z Motor]
17-03-18 01:29:19.750 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:29:19.760 -07 000000424 INF: FPGA: 'ZDACW 29376' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:29:19.760 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:29:19.770 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:29:19.780 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:29:19.780 -07 000000591 INF: FPGA: Recv ZDACR 29376
17-03-18 01:29:19.790 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:29:19.790 -07 000000424 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 01:29:19.960 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:29:19.960 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 01:29:20.050 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:29:20.050 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:29:20.050 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:20.050 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:29:20.060 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:29:20.060 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:20.060 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:29:20.060 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 01:29:20.060 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:29:20.070 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 01:29:20.140 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:29:20.140 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:29:20.190 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:20.190 -07 000000590 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:29:20.200 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:20.200 -07 000000455 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:20.200 -07 000000455 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 01:29:20.200 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-18 01:29:21.150 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:21.150 -07 000000591 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:29:21.160 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:21.160 -07 000000455 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:21.190 -07 000000455 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:29:21.190 -07 000000455 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:29:21.190 -07 000000455 INF: Y Motor: Moved to 73.1763 after 1457 ms (table move)
17-03-18 01:29:21.200 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134475 mm (DAC = 29376)
17-03-18 01:29:21.200 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:21.200 -07 000000461 INF: FPGA: Recv ZSGSRD 30231
17-03-18 01:29:21.210 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:29:21.210 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:21.210 -07 000000461 INF: FPGA: Recv ZSGSRD 30222
17-03-18 01:29:21.220 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:21.220 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:21.220 -07 000000502 INF: FPGA: Recv ZSGSRD 30216
17-03-18 01:29:21.230 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:21.230 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:21.230 -07 000000502 INF: FPGA: Recv ZSGSRD 30222
17-03-18 01:29:21.240 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:21.240 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:21.240 -07 000000487 INF: FPGA: Recv ZSGSRD 30226
17-03-18 01:29:21.250 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:21.250 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:21.250 -07 000000424 INF: FPGA: Recv ZSGSRD 30221
17-03-18 01:29:21.260 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:21.260 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:21.260 -07 000000625 INF: FPGA: Recv ZSGSRD 30219
17-03-18 01:29:21.270 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:21.270 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:21.270 -07 000000424 INF: FPGA: Recv ZSGSRD 30216
17-03-18 01:29:21.280 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:21.280 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:21.280 -07 000000625 INF: FPGA: Recv ZSGSRD 30224
17-03-18 01:29:21.290 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:21.290 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:21.290 -07 000000461 INF: FPGA: Recv ZSGSRD 30226
17-03-18 01:29:21.300 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:21.300 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:21.300 -07 000000625 INF: FPGA: Recv ZPIEZORD 25989
17-03-18 01:29:21.310 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:21.310 -07 000000447 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.482 V. Piezo Error = -9.3 V.
17-03-18 01:29:21.310 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30222 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30222 (-133.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30216 (-133.6 uncal um), Max = 30231 (-133.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:29:21.310 -07 000000447 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30222, posNoise = 9, negNoise = 6
17-03-18 01:29:21.310 -07 000000447 INF: Z Motor: After move to -0.134475, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:21.310 -07 000000447 INF: Z Motor: Settle wait time = 1461 ms, measure time = 108 ms (allowed 150 ms), total time = 1569 ms
17-03-18 01:29:21.310 -07 000000447 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:29:21.360 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 01:29:21.360 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:29:21.360 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:21.360 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:21.360 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:21.360 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:21.360 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:29:21.360 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:21.360 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:29:21.370 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:29:21.370 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:29:21.370 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:29:21.370 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:29:21.370 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:29:21.380 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:29:21.420 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:29:21.720 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:29:21.720 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:29:21.720 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:29:21.720 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:29:21.760 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:29:21.760 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 01:29:21.760 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:29:21.840 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:29:21.840 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:21.840 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:29:21.840 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 01:29:21.860 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:29:21.860 -07 000000487 INF: Autofocus start
17-03-18 01:29:21.860 -07 000000487 INF: MeasureProfile start
17-03-18 01:29:21.860 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:29:21.870 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:29:21.870 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:29:21.870 -07 000000487 INF: MeasureProfile done
17-03-18 01:29:21.870 -07 000000487 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:29:21.870 -07 000000487 INF: Autofocus finished
17-03-18 01:29:22.070 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:29:22.070 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:29:22.070 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134475891359435. ----------
17-03-18 01:29:22.070 -07 000000610 INF: Cycle	87	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:29:22.080 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27900, sync = True, waitForSettling = True)
17-03-18 01:29:22.080 -07 000000610 INF: Z Motor: Moving to -0.127718 mm, started at -0.134476 mm, distance = 6.76 um
17-03-18 01:29:22.080 -07 000000610 INF: FPGA: Xmit ZDACW 27900\n [Z Motor]
17-03-18 01:29:22.080 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:29:22.090 -07 000000610 INF: FPGA: 'ZDACW 27900' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:29:22.090 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:29:22.090 -07 000000625 INF: FPGA: Recv ZDACR 27900
17-03-18 01:29:22.100 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:22.100 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:29:22.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:22.250 -07 000000424 INF: FPGA: Recv ZSGSRD 29171
17-03-18 01:29:22.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:22.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:22.260 -07 000000424 INF: FPGA: Recv ZSGSRD 29178
17-03-18 01:29:22.260 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:29:22.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:29:22.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:22.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:22.270 -07 000000424 INF: FPGA: Recv ZSGSRD 29167
17-03-18 01:29:22.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:22.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:22.280 -07 000000424 INF: FPGA: Recv ZSGSRD 29167
17-03-18 01:29:22.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:22.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:22.290 -07 000000424 INF: FPGA: Recv ZSGSRD 29169
17-03-18 01:29:22.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:22.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:22.300 -07 000000424 INF: FPGA: Recv ZSGSRD 29170
17-03-18 01:29:22.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:22.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:22.310 -07 000000424 INF: FPGA: Recv ZSGSRD 29174
17-03-18 01:29:22.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:22.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:22.320 -07 000000424 INF: FPGA: Recv ZSGSRD 29168
17-03-18 01:29:22.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:22.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:22.330 -07 000000424 INF: FPGA: Recv ZSGSRD 29173
17-03-18 01:29:22.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:22.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:22.340 -07 000000424 INF: FPGA: Recv ZSGSRD 29170
17-03-18 01:29:22.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:22.350 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:22.350 -07 000000424 INF: FPGA: Recv ZPIEZORD 24589
17-03-18 01:29:22.360 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:22.360 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.257 V. Piezo Error = -10.0 V.
17-03-18 01:29:22.360 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29171 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29170 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29167 (-126.9 uncal um), Max = 29178 (-127.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:29:22.360 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29171, posNoise = 7, negNoise = 4
17-03-18 01:29:22.360 -07 000000610 INF: Z Motor: After move to -0.127718, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:22.360 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:29:22.360 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:22.360 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:22.360 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:22.360 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:22.360 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:29:22.360 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:22.370 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:29:22.370 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:29:22.370 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:29:22.370 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:29:22.380 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:29:22.380 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:29:22.390 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:29:22.390 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:29:22.390 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:29:22.390 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:29:22.390 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:29:22.390 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:29:22.410 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:29:22.410 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:29:22.410 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28076 150\n [Camera]
17-03-18 01:29:22.610 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 01:29:23.000 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:29:23.000 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:29:23.000 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:23.000 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:29:23.000 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:29:23.000 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:23.000 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:23.000 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:29:23.000 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:23.000 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2617114384, 0x0, 391868352) start.
17-03-18 01:29:23.230 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28076 775
17-03-18 01:29:23.340 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:29:23.390 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2617114384, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:29:23.390 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:29:23.390 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:23.400 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:29:23.400 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:29:23.400 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:29:23.400 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:29:23.400 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:23.400 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:29:23.410 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:29:23.430 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 4.003063,
17-03-18 01:29:23.530 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:29:23.530 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:29:23.530 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:23.530 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:29:23.530 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:29:23.530 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:23.540 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:23.540 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:29:23.540 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:23.540 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:29:23.720 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:29:23.720 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:29:23.720 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28076 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-18 01:29:23.720 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:29:23.720 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127724044398444. ------
17-03-18 01:29:23.730 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:29:23.730 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13408 mm
17-03-18 01:29:23.730 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:29:23.730 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:29:23.730 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:29:23.730 -07 000000629 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 01:29:23.730 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29290, sync = True, waitForSettling = False)
17-03-18 01:29:23.730 -07 000000455 INF: Z Motor: Moving to -0.134081 mm, started at -0.127724 mm, distance = -6.36 um
17-03-18 01:29:23.740 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:29:23.740 -07 000000455 INF: FPGA: Xmit ZDACW 29290\n [Z Motor]
17-03-18 01:29:23.740 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 01:29:23.750 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:23.750 -07 000000455 INF: FPGA: 'ZDACW 29290' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:29:23.750 -07 000000479 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:29:23.760 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:29:23.760 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:29:23.760 -07 000000629 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:23.760 -07 000000629 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:29:23.760 -07 000000629 INF: Y Motor: Moving 1354 steps-34
17-03-18 01:29:23.770 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:29:23.770 -07 000000479 INF: FPGA: Recv ZDACR 29290
17-03-18 01:29:23.780 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:29:23.780 -07 000000455 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 01:29:23.780 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:29:23.940 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:29:23.940 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:29:23.940 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:23.940 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:29:23.940 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:29:23.940 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:23.940 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:29:23.940 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:29:23.940 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:29:23.950 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:29:23.960 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:29:23.960 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:29:24.150 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 01:29:24.150 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:29:24.190 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:24.190 -07 000000455 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:29:24.200 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:29:24.200 -07 000000629 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:24.200 -07 000000629 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:29:24.200 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-18 01:29:25.150 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:25.150 -07 000000479 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:29:25.160 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:25.160 -07 000000629 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:25.180 -07 000000629 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:29:25.180 -07 000000629 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:29:25.180 -07 000000629 INF: Y Motor: Moved to 74.0083 after 1443 ms (table move)
17-03-18 01:29:25.180 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134081 mm (DAC = 29290)
17-03-18 01:29:25.180 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:25.180 -07 000000455 INF: FPGA: Recv ZSGSRD 30156
17-03-18 01:29:25.190 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:29:25.190 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:25.190 -07 000000608 INF: FPGA: Recv ZSGSRD 30160
17-03-18 01:29:25.200 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:25.200 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:25.200 -07 000000479 INF: FPGA: Recv ZSGSRD 30163
17-03-18 01:29:25.210 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:25.210 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:26.210 -07 000000479 INF: FPGA: Recv ZSGSRD 30166
17-03-18 01:29:26.210 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 990 ms to get response, and 1000 ms overall
17-03-18 01:29:26.210 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:26.210 -07 000000424 INF: FPGA: Recv ZSGSRD 30170
17-03-18 01:29:26.220 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:26.220 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:26.220 -07 000000455 INF: FPGA: Recv ZSGSRD 30165
17-03-18 01:29:26.230 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:26.230 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:26.230 -07 000000479 INF: FPGA: Recv ZSGSRD 30156
17-03-18 01:29:26.240 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:26.240 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:26.240 -07 000000629 INF: FPGA: Recv ZSGSRD 30160
17-03-18 01:29:26.250 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:26.250 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:26.250 -07 000000455 INF: FPGA: Recv ZSGSRD 30161
17-03-18 01:29:26.260 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:26.260 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:26.260 -07 000000455 INF: FPGA: Recv ZSGSRD 30164
17-03-18 01:29:26.270 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:26.270 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:26.270 -07 000000591 INF: FPGA: Recv ZPIEZORD 25895
17-03-18 01:29:26.280 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:26.280 -07 000000618 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.469 V. Piezo Error = -9.4 V.
17-03-18 01:29:26.280 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.1 um, Read 10 ADC samples: Avg = 30162 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30162 (-133.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30156 (-133.3 uncal um), Max = 30170 (-133.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:29:26.280 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30162, posNoise = 8, negNoise = 6
17-03-18 01:29:26.280 -07 000000618 INF: Z Motor: After move to -0.134081, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:26.280 -07 000000618 INF: Z Motor: Settle wait time = 1446 ms, measure time = 1096 ms (allowed 150 ms), total time = 2542 ms
17-03-18 01:29:26.280 -07 000000618 INF: Z Motor: Warning: Actual position measuring time = 1096 ms, longer than max expected time of 150 ms
17-03-18 01:29:26.280 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2546 ms
17-03-18 01:29:26.280 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:29:26.280 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:26.280 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:26.280 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:26.280 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:26.280 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:29:26.280 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:26.280 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:29:26.280 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:29:26.290 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:29:26.290 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:29:26.300 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:29:26.300 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:29:26.300 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:29:26.340 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:29:26.640 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:29:26.640 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:29:26.650 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:29:26.650 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 01:29:26.680 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:29:26.680 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 01:29:26.680 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 01:29:26.780 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 129 ms.
17-03-18 01:29:26.780 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:26.780 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:29:26.780 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 01:29:26.880 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:29:26.880 -07 000000479 INF: Autofocus start
17-03-18 01:29:26.880 -07 000000479 INF: MeasureProfile start
17-03-18 01:29:26.880 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:29:26.890 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:29:26.890 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:29:26.890 -07 000000479 INF: MeasureProfile done
17-03-18 01:29:26.890 -07 000000479 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:29:26.890 -07 000000479 INF: Autofocus finished
17-03-18 01:29:27.090 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:29:27.090 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:29:27.090 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134090438630929. ----------
17-03-18 01:29:27.090 -07 000000610 INF: Cycle	87	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:29:27.100 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27797, sync = True, waitForSettling = True)
17-03-18 01:29:27.100 -07 000000610 INF: Z Motor: Moving to -0.127247 mm, started at -0.134090 mm, distance = 6.84 um
17-03-18 01:29:27.100 -07 000000610 INF: FPGA: Xmit ZDACW 27797\n [Z Motor]
17-03-18 01:29:27.100 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:29:27.110 -07 000000610 INF: FPGA: 'ZDACW 27797' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:29:27.110 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:29:27.110 -07 000000424 INF: FPGA: Recv ZDACR 27797
17-03-18 01:29:27.120 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:27.120 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:29:27.260 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:29:27.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:29:27.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:27.270 -07 000000424 INF: FPGA: Recv ZSGSRD 29099
17-03-18 01:29:27.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:27.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:27.280 -07 000000455 INF: FPGA: Recv ZSGSRD 29096
17-03-18 01:29:27.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:27.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:27.290 -07 000000479 INF: FPGA: Recv ZSGSRD 29095
17-03-18 01:29:27.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:27.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:27.300 -07 000000479 INF: FPGA: Recv ZSGSRD 29095
17-03-18 01:29:27.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:27.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:27.310 -07 000000479 INF: FPGA: Recv ZSGSRD 29101
17-03-18 01:29:27.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:27.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:27.320 -07 000000629 INF: FPGA: Recv ZSGSRD 29104
17-03-18 01:29:27.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:27.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:27.330 -07 000000479 INF: FPGA: Recv ZSGSRD 29094
17-03-18 01:29:27.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:27.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:27.340 -07 000000618 INF: FPGA: Recv ZSGSRD 29097
17-03-18 01:29:27.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:27.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:27.350 -07 000000479 INF: FPGA: Recv ZSGSRD 29100
17-03-18 01:29:27.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:27.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:27.360 -07 000000455 INF: FPGA: Recv ZSGSRD 29097
17-03-18 01:29:27.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:27.370 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:27.370 -07 000000424 INF: FPGA: Recv ZPIEZORD 24518
17-03-18 01:29:27.380 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:27.380 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.242 V. Piezo Error = -10.0 V.
17-03-18 01:29:27.380 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.2 um, Read 10 ADC samples: Avg = 29098 (-126.5 uncal um), Error = 0.8 uncal um, Median = 29097 (-126.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29094 (-126.5 uncal um), Max = 29104 (-126.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:29:27.380 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29098, posNoise = 6, negNoise = 4
17-03-18 01:29:27.380 -07 000000610 INF: Z Motor: After move to -0.127247, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:27.380 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:29:27.380 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:27.380 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:27.380 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:27.380 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:27.380 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:29:27.380 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:29:27.380 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:29:27.380 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:27.380 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:29:27.380 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:29:27.380 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:29:27.380 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:29:27.390 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:29:27.390 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:29:27.390 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:29:27.390 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:29:27.400 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:29:27.400 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:29:27.400 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:29:27.400 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:29:27.400 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27974 150\n [Camera]
17-03-18 01:29:27.600 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:29:27.990 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:29:27.990 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:29:28.000 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:28.000 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:28.000 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:29:28.000 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:29:28.000 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:29:28.000 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:28.000 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:28.000 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 01:29:28.190 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27974 775
17-03-18 01:29:28.340 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:29:28.400 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:29:28.400 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:29:28.400 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:28.400 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:29:28.400 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:29:28.400 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:29:28.400 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:29:28.400 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:28.400 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:29:28.410 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:29:28.520 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:29:28.530 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:29:28.530 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:28.530 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:28.530 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:29:28.530 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:29:28.530 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:29:28.530 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:28.530 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:28.530 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 01:29:28.720 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:29:28.720 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:29:28.720 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27974 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:29:28.720 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:29:28.720 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127255076912095. ------
17-03-18 01:29:28.730 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:29:28.730 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13315 mm
17-03-18 01:29:28.730 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:29:28.730 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:29:28.730 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:29:28.730 -07 000000502 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 01:29:28.730 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 29086, sync = True, waitForSettling = False)
17-03-18 01:29:28.730 -07 000000479 INF: Z Motor: Moving to -0.133147 mm, started at -0.127255 mm, distance = -5.89 um
17-03-18 01:29:28.740 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:28.740 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:28.740 -07 000000625 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:29:28.750 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:29:28.750 -07 000000479 INF: FPGA: Xmit ZDACW 29086\n [Z Motor]
17-03-18 01:29:28.750 -07 000000502 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:28.750 -07 000000502 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:29:28.750 -07 000000502 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:29:28.750 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:29:28.760 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:29:28.760 -07 000000479 INF: FPGA: 'ZDACW 29086' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:29:28.770 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:29:28.780 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:29:28.780 -07 000000455 INF: FPGA: Recv ZDACR 29086
17-03-18 01:29:28.790 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:29:28.790 -07 000000479 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 01:29:28.800 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.98264,
17-03-18 01:29:28.920 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 01:29:28.920 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:29:28.920 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:28.920 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:29:28.920 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:29:28.920 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:28.920 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:29:28.930 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:29:28.930 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:29:28.930 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:29:28.960 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:29:28.960 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:29:29.140 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:29:29.140 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:29:29.170 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:29.170 -07 000000455 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:29:29.180 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:29:29.180 -07 000000502 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:29.180 -07 000000502 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 01:29:29.180 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-18 01:29:30.130 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:30.130 -07 000000424 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:29:30.140 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:30.140 -07 000000502 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:30.150 -07 000000502 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:29:30.150 -07 000000502 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:29:30.150 -07 000000502 INF: Y Motor: Moved to 74.8320 after 1424 ms (table move)
17-03-18 01:29:30.160 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133147 mm (DAC = 29086)
17-03-18 01:29:30.160 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:30.160 -07 000000502 INF: FPGA: Recv ZSGSRD 30015
17-03-18 01:29:30.170 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:29:30.170 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:30.170 -07 000000625 INF: FPGA: Recv ZSGSRD 30014
17-03-18 01:29:30.180 -07 000000487 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:30.180 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:30.180 -07 000000455 INF: FPGA: Recv ZSGSRD 30011
17-03-18 01:29:30.190 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:30.190 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:30.190 -07 000000455 INF: FPGA: Recv ZSGSRD 30013
17-03-18 01:29:30.200 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:30.200 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:30.200 -07 000000455 INF: FPGA: Recv ZSGSRD 30014
17-03-18 01:29:30.210 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:30.210 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:30.210 -07 000000455 INF: FPGA: Recv ZSGSRD 30012
17-03-18 01:29:30.220 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:30.220 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:30.220 -07 000000455 INF: FPGA: Recv ZSGSRD 30017
17-03-18 01:29:30.230 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:30.230 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:30.230 -07 000000455 INF: FPGA: Recv ZSGSRD 30020
17-03-18 01:29:30.240 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:30.240 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:30.240 -07 000000455 INF: FPGA: Recv ZSGSRD 30015
17-03-18 01:29:30.250 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:30.250 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:30.250 -07 000000455 INF: FPGA: Recv ZSGSRD 30016
17-03-18 01:29:30.260 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:30.260 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:30.260 -07 000000455 INF: FPGA: Recv ZPIEZORD 25772
17-03-18 01:29:30.270 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:30.270 -07 000000487 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.438 V. Piezo Error = -9.3 V.
17-03-18 01:29:30.270 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30015 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30014 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30011 (-132.3 uncal um), Max = 30020 (-132.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:29:30.270 -07 000000487 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30015, posNoise = 5, negNoise = 4
17-03-18 01:29:30.270 -07 000000487 INF: Z Motor: After move to -0.133147, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:30.270 -07 000000487 INF: Z Motor: Settle wait time = 1428 ms, measure time = 108 ms (allowed 150 ms), total time = 1536 ms
17-03-18 01:29:30.270 -07 000000487 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:29:30.320 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-18 01:29:30.320 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:29:30.320 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:30.320 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:30.320 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:30.320 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:30.330 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:29:30.330 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:30.330 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:29:30.330 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:29:30.330 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:29:30.330 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:29:30.340 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:29:30.340 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:29:30.340 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:29:30.390 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:29:30.690 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:29:30.690 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:29:30.690 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:29:30.690 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) start.
17-03-18 01:29:30.720 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:29:30.730 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:29:30.730 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:29:30.800 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:29:30.800 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:30.800 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:29:30.810 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:29:30.830 -07 000000487 INF: Autofocus start
17-03-18 01:29:30.830 -07 000000487 INF: MeasureProfile start
17-03-18 01:29:30.830 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:29:30.840 -07 000000487 INF: MeasureProfile done
17-03-18 01:29:30.840 -07 000000487 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:29:30.840 -07 000000487 INF: Autofocus finished
17-03-18 01:29:30.850 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:29:30.850 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 10 ms to get response, and 14 ms overall
17-03-18 01:29:30.850 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:29:31.050 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:29:31.050 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:29:31.050 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.13314607944609. ----------
17-03-18 01:29:31.050 -07 000000610 INF: Cycle	87	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:29:31.060 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27610, sync = True, waitForSettling = True)
17-03-18 01:29:31.060 -07 000000610 INF: Z Motor: Moving to -0.126390 mm, started at -0.133146 mm, distance = 6.76 um
17-03-18 01:29:31.060 -07 000000610 INF: FPGA: Xmit ZDACW 27610\n [Z Motor]
17-03-18 01:29:31.060 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:29:31.070 -07 000000610 INF: FPGA: 'ZDACW 27610' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:29:31.070 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:29:31.070 -07 000000487 INF: FPGA: Recv ZDACR 27610
17-03-18 01:29:31.080 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:31.080 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:29:31.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:31.230 -07 000000487 INF: FPGA: Recv ZSGSRD 28966
17-03-18 01:29:31.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:31.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:31.240 -07 000000487 INF: FPGA: Recv ZSGSRD 28968
17-03-18 01:29:31.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:31.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:31.250 -07 000000487 INF: FPGA: Recv ZSGSRD 28964
17-03-18 01:29:31.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:31.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:31.260 -07 000000455 INF: FPGA: Recv ZSGSRD 28967
17-03-18 01:29:31.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:31.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:31.270 -07 000000474 INF: FPGA: Recv ZSGSRD 28964
17-03-18 01:29:31.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:31.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:31.280 -07 000000474 INF: FPGA: Recv ZSGSRD 28965
17-03-18 01:29:31.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:31.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:31.290 -07 000000455 INF: FPGA: Recv ZSGSRD 28965
17-03-18 01:29:31.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:31.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:31.300 -07 000000447 INF: FPGA: Recv ZSGSRD 28961
17-03-18 01:29:31.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:31.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:31.310 -07 000000487 INF: FPGA: Recv ZSGSRD 28966
17-03-18 01:29:31.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:31.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:29:31.320 -07 000000447 INF: FPGA: Recv ZSGSRD 28961
17-03-18 01:29:31.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:31.330 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:29:31.330 -07 000000487 INF: FPGA: Recv ZPIEZORD 24363
17-03-18 01:29:31.340 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:31.340 -07 000000610 INF: Z Motor: Piezo is near 32.0 V (nominally 0 to 100 V), expect near 42.1 V, since DAC is at 4.213 V. Piezo Error = -10.1 V.
17-03-18 01:29:31.340 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.4 um, Read 10 ADC samples: Avg = 28965 (-125.6 uncal um), Error = 0.8 uncal um, Median = 28965 (-125.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 28961 (-125.6 uncal um), Max = 28968 (-125.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:29:31.340 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28965, posNoise = 3, negNoise = 4
17-03-18 01:29:31.340 -07 000000610 INF: Z Motor: After move to -0.126390, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:29:31.340 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:29:31.340 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:29:31.340 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:29:31.340 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:29:31.340 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:29:31.340 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:29:31.340 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:29:31.340 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:29:31.340 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:29:31.340 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 01:29:31.340 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:29:31.340 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:29:31.340 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:29:31.350 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:29:31.350 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:29:31.350 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:29:31.350 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:29:31.360 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:29:31.360 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 01:29:31.360 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:29:31.360 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:29:31.370 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27787 150\n [Camera]
17-03-18 01:29:31.570 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:29:31.950 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:29:31.960 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:29:31.960 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:31.960 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:31.960 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 01:29:31.960 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:29:31.960 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:29:31.960 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:31.960 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:31.960 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:29:32.150 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27787 775
17-03-18 01:29:32.260 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:29:32.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 86. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:29:32.300 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:29:32.360 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:29:32.360 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:29:32.360 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:32.360 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:29:32.360 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:29:32.360 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:32.360 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:29:32.360 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:29:32.360 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:29:32.370 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:29:32.490 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:29:32.490 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:29:32.490 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:29:32.490 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:29:32.490 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:29:32.490 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:29:32.490 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:29:32.490 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:29:32.490 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:29:32.490 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:29:32.680 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:29:32.680 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:29:32.680 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27787 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:29:32.890 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 01:29:32.890 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:29:32.890 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:32.900 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 01:29:32.900 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:29:32.900 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:29:32.900 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:29:32.900 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:29:32.900 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 01:29:32.900 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:29:32.910 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:29:32.950 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-18 01:29:32.950 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:29:32.990 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 01:29:33.000 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 01:29:33.000 -07 000000610 INF: Imaging Cycle 87: ScanTilesCommand Cycle 87 time end. Duration was 161643 ms.
17-03-18 01:29:33.000 -07 000000610 INF: =================== Cycle #87 ===================
17-03-18 01:29:33.000 -07 000000610 INF: ===================  ===================
17-03-18 01:29:33.000 -07 000000591 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:29:33.000 -07 000000447 INF: FPGA: Recv EXLED1ADCR 25
17-03-18 01:29:33.010 -07 000000591 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:29:33.010 -07 000000591 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-18 01:29:33.010 -07 000000591 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 87, FrontChillerTemperature: 3.98264, FrontChillerHeatSinkTemperature: 0.560124, AmbientTemperature: 18.71059, FlowCellCompartmentTemperature: 21.98965, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.50684, GreenLEDSensorTemperature: 27.06766, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-18 01:29:33.080 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.